AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005960.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005960.01.T01 MTR_1g110690 85.583 326 21 2 1 300 1 326 0.0 512
MsG0180005960.01.T01 MTR_6g038150 49.573 234 93 1 1 209 1 234 2.28e-68 223
MsG0180005960.01.T01 MTR_8g074540 43.434 198 87 1 7 179 21 218 1.30e-54 183
MsG0180005960.01.T01 MTR_6g091690 42.132 197 89 1 7 178 1 197 9.49e-49 174
MsG0180005960.01.T01 MTR_8g074540 41.259 143 59 1 62 179 2 144 8.66e-33 124
MsG0180005960.01.T01 MTR_4g081350 28.659 328 190 8 7 299 1 319 1.30e-29 116
MsG0180005960.01.T01 MTR_4g081350 35.028 177 89 2 7 158 1 176 8.93e-29 114
MsG0180005960.01.T01 MTR_6g091690 41.221 131 52 1 73 178 2 132 3.66e-25 105
MsG0180005960.01.T01 MTR_1g111210 31.492 181 98 2 4 158 5 185 2.12e-20 90.5
MsG0180005960.01.T01 MTR_2g090230 31.875 160 84 1 17 151 3 162 5.09e-19 87.4
MsG0180005960.01.T01 MTR_7g407010 30.488 164 89 1 13 151 8 171 1.81e-17 82.4
MsG0180005960.01.T01 MTR_4g038310 27.230 213 120 3 11 193 3 210 1.21e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005960.01.T01 AT1G25420 51.515 297 105 5 1 270 1 285 3.68e-97 289
MsG0180005960.01.T01 AT1G25420 49.259 270 98 5 28 270 1 258 4.95e-80 244
MsG0180005960.01.T01 AT1G34220 48.133 241 97 2 1 213 1 241 1.25e-68 224
MsG0180005960.01.T01 AT1G34220 42.804 271 97 3 1 213 1 271 2.99e-62 208
MsG0180005960.01.T01 AT4G35730 43.689 206 91 1 7 187 21 226 1.25e-54 184
MsG0180005960.01.T01 AT1G25420 43.421 228 90 5 70 270 2 217 2.81e-52 172
MsG0180005960.01.T01 AT1G25420 43.421 228 90 5 70 270 2 217 2.81e-52 172
MsG0180005960.01.T01 AT4G29440 41.209 182 82 2 4 160 1 182 1.57e-45 165
MsG0180005960.01.T01 AT2G19710 31.014 345 149 7 4 278 1 326 1.00e-43 159
MsG0180005960.01.T01 AT4G29440 43.137 153 62 2 33 160 2 154 7.21e-38 143
MsG0180005960.01.T01 AT1G13340 27.320 194 114 2 4 170 5 198 1.42e-16 79.7
MsG0180005960.01.T01 AT1G79910 27.273 176 107 4 3 160 1 173 1.32e-13 70.9
MsG0180005960.01.T01 AT2G14830 27.976 168 96 1 14 156 11 178 1.90e-13 70.5

Find 61 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATATCGTTTGAACAATT+TGG 0.136117 1:+98095879 MsG0180005960.01.T01:three_prime_UTR
AACTTGTTTACTACTAAATA+TGG 0.198039 1:+98093835 MsG0180005960.01.T01:CDS
ATGGGCTGCATATGAAATTT+TGG 0.213582 1:+98091790 MsG0180005960.01.T01:CDS
CTAAAACTGCAGCAGAATTT+AGG 0.215309 1:+98094133 MsG0180005960.01.T01:CDS
TACTTCTGACTCTCAATTAT+AGG 0.241660 1:-98091845 None:intergenic
TTCTTTCTAACAATAATTCT+TGG 0.251948 1:+98095478 MsG0180005960.01.T01:CDS
ATTTCAATCCTCTGATATAT+TGG 0.254871 1:+98095575 MsG0180005960.01.T01:CDS
TCATTCGAGAACAAAATATA+TGG 0.266370 1:+98091771 MsG0180005960.01.T01:CDS
AGAGTTGATCTTAACTTTGT+AGG 0.321245 1:-98096020 None:intergenic
TCTGAACTTCGTCCTGATTC+AGG 0.335446 1:+98093880 MsG0180005960.01.T01:CDS
TTATATCGTTTGAACAATTT+GGG 0.336633 1:+98095880 MsG0180005960.01.T01:three_prime_UTR
AAGAACCAATTGCTAGAATT+CGG 0.357696 1:+98091650 MsG0180005960.01.T01:CDS
CAACGGAACTTTGATGTGCT+TGG 0.386027 1:+98095937 MsG0180005960.01.T01:three_prime_UTR
GTGCGATTCACGCCTGAATC+AGG 0.402265 1:-98093892 None:intergenic
ATTACCCGAATTCTAGCAAT+TGG 0.402690 1:-98091655 None:intergenic
CTAAATCGATGAACTTTGCT+TGG 0.419542 1:+98095715 MsG0180005960.01.T01:three_prime_UTR
CTTTCAGTTAGTGCTCCATC+TGG 0.420640 1:+98094048 MsG0180005960.01.T01:CDS
TCACTTGCACATAGTGACTT+TGG 0.422099 1:+98095657 MsG0180005960.01.T01:CDS
AGAACCAATTGCTAGAATTC+GGG 0.432063 1:+98091651 MsG0180005960.01.T01:CDS
TAGAAAGAATAGAAGCTTCA+AGG 0.433370 1:-98095464 None:intergenic
CCGTTGTGTTCACCCATGTC+AGG 0.434397 1:-98095920 None:intergenic
ACTTGTTTACTACTAAATAT+GGG 0.437025 1:+98093836 MsG0180005960.01.T01:CDS
TGCTACCAACAGAGAGAACT+TGG 0.442231 1:-98095990 None:intergenic
TTTGCTTGGTATCTCAAGGT+TGG 0.477044 1:+98095729 MsG0180005960.01.T01:three_prime_UTR
CATTCGAGAACAAAATATAT+GGG 0.494027 1:+98091772 MsG0180005960.01.T01:CDS
AGCGTGGTGATTTAGTTTCG+TGG 0.500125 1:+98091270 MsG0180005960.01.T01:five_prime_UTR
GTTCTCTCTGTTGGTAGCAA+TGG 0.504169 1:+98095994 MsG0180005960.01.T01:three_prime_UTR
TAAAGCCAAGTTCTCTCTGT+TGG 0.506407 1:+98095985 MsG0180005960.01.T01:three_prime_UTR
GATAAAACTCAAGGTCTTGA+CGG 0.511590 1:+98094074 MsG0180005960.01.T01:CDS
CACCCATGTCAGGATTTACA+AGG 0.517157 1:-98095910 None:intergenic
TGCACGATTTGCAGAAGCTA+TGG 0.518629 1:-98095613 None:intergenic
TGACTTTGGATCATTGAAGC+TGG 0.520410 1:+98095671 MsG0180005960.01.T01:CDS
GAACTTTGCTTGGTATCTCA+AGG 0.520612 1:+98095725 MsG0180005960.01.T01:three_prime_UTR
CAGAAGAATACAATCTAGCA+TGG 0.533676 1:+98094103 MsG0180005960.01.T01:CDS
TGCGTGAAATTGCGAGGTTG+AGG 0.541893 1:-98091549 None:intergenic
CTTAATCAACTCTTTAGCAG+AGG 0.562495 1:+98091331 MsG0180005960.01.T01:CDS
GTTGATCTTAACTTTGTAGG+TGG 0.564479 1:-98096017 None:intergenic
ATCCTCTGATATATTGGAGA+AGG 0.565767 1:+98095581 MsG0180005960.01.T01:CDS
AAGTTAAATAATATGACTGA+TGG 0.570771 1:-98096162 None:intergenic
ATCTGGAGAGATAAAACTCA+AGG 0.587410 1:+98094065 MsG0180005960.01.T01:CDS
ACAAAGTTAAGATCAACTCT+AGG 0.588749 1:+98096023 MsG0180005960.01.T01:three_prime_UTR
TTTGGATCATTGAAGCTGGA+AGG 0.592273 1:+98095675 MsG0180005960.01.T01:CDS
GTACAGTAAATACCGCAGTA+AGG 0.599724 1:-98095765 None:intergenic
GGAGCAAAGCAAGTTGGTGT+CGG 0.600016 1:+98095336 MsG0180005960.01.T01:CDS
GCACCTTGTAAATCCTGACA+TGG 0.600463 1:+98095907 MsG0180005960.01.T01:three_prime_UTR
CAGGGTGGAGCAAAGCAAGT+TGG 0.607429 1:+98095330 MsG0180005960.01.T01:intron
CAATTATAGGTACACGTGCA+AGG 0.612342 1:-98091832 None:intergenic
CATACTGAATCGATTTAGCA+AGG 0.613662 1:-98096077 None:intergenic
ACGATTTGCAGAAGCTATGG+CGG 0.619875 1:-98095610 None:intergenic
ATATGACTGATGGTAAAACA+TGG 0.625788 1:-98096152 None:intergenic
TCTTGCATTGAGCCCATCGT+AGG 0.629156 1:-98096114 None:intergenic
AGCCTTCTCCAATATATCAG+AGG 0.634844 1:-98095583 None:intergenic
ACTTCATGCGTGAAATTGCG+AGG 0.641498 1:-98091555 None:intergenic
AGAAGAATACAATCTAGCAT+GGG 0.650670 1:+98094104 MsG0180005960.01.T01:CDS
TCAACTCAAACAAATGCGGA+AGG 0.653130 1:+98091600 MsG0180005960.01.T01:CDS
TAATCAATGATCATCCGTTG+AGG 0.674122 1:+98096264 MsG0180005960.01.T01:three_prime_UTR
CCTGACATGGGTGAACACAA+CGG 0.674454 1:+98095920 MsG0180005960.01.T01:three_prime_UTR
CACCTTGTAAATCCTGACAT+GGG 0.680728 1:+98095908 MsG0180005960.01.T01:three_prime_UTR
TGATCTGAGGAAGCAAAGCG+TGG 0.683836 1:+98091254 MsG0180005960.01.T01:five_prime_UTR
ATGTTCAACTCAAACAAATG+CGG 0.693836 1:+98091596 MsG0180005960.01.T01:CDS
ACATTGTTAAGACCTTACTG+CGG 0.792534 1:+98095753 MsG0180005960.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAATAATAAATGAAA+TGG - Chr1:98095080-98095099 None:intergenic 10.0%
!! TAATATCAAAAAATATATAC+TGG - Chr1:98094007-98094026 None:intergenic 10.0%
!!! AATAAGTTTTTTATCTAAAT+AGG - Chr1:98092351-98092370 None:intergenic 10.0%
!!! ATGTGTATTTATTTTTATAA+TGG + Chr1:98095857-98095876 MsG0180005960.01.T01:three_prime_UTR 10.0%
!!! TAATTTTAACAATAGTTTAA+TGG + Chr1:98091178-98091197 MsG0180005960.01.T01:five_prime_UTR 10.0%
!! ATTAAAACAAAATCTAATGA+TGG - Chr1:98091492-98091511 None:intergenic 15.0%
!! TTAATTAAGAAACATGTAAT+GGG - Chr1:98091465-98091484 None:intergenic 15.0%
!! TTTAAATGTGTAAAACATTA+AGG + Chr1:98092154-98092173 MsG0180005960.01.T01:intron 15.0%
!!! ACAAATAAAATTTTAAGGTT+TGG - Chr1:98093301-98093320 None:intergenic 15.0%
!!! AGTACACAAATAAAATTTTA+AGG - Chr1:98093306-98093325 None:intergenic 15.0%
!!! TTTATTTTATATGTATGTGT+AGG - Chr1:98092755-98092774 None:intergenic 15.0%
!! AAATTTATGTTTCTTGAGTA+TGG + Chr1:98092218-98092237 MsG0180005960.01.T01:intron 20.0%
!! AAGTTAAATAATATGACTGA+TGG - Chr1:98096165-98096184 None:intergenic 20.0%
!! ACTTGTTTACTACTAAATAT+GGG + Chr1:98093836-98093855 MsG0180005960.01.T01:CDS 20.0%
!! ATAAAACACAAACTACTTTA+TGG - Chr1:98093402-98093421 None:intergenic 20.0%
!! ATAAGTTTCATGAAATTGTT+TGG - Chr1:98092560-98092579 None:intergenic 20.0%
!! ATGAAATTTGCAATAATATC+CGG - Chr1:98094360-98094379 None:intergenic 20.0%
!! CTTAATTAAGAAACATGTAA+TGG - Chr1:98091466-98091485 None:intergenic 20.0%
!! TAAAACACAAACTACTTTAT+GGG - Chr1:98093401-98093420 None:intergenic 20.0%
!! TAAGTTTCATGAAATTGTTT+GGG - Chr1:98092559-98092578 None:intergenic 20.0%
!! TGTTAAAAGCTTCAAATTAT+TGG + Chr1:98091420-98091439 MsG0180005960.01.T01:intron 20.0%
!! TTATATCGTTTGAACAATTT+GGG + Chr1:98095880-98095899 MsG0180005960.01.T01:three_prime_UTR 20.0%
!! TTCTTTCTAACAATAATTCT+TGG + Chr1:98095478-98095497 MsG0180005960.01.T01:CDS 20.0%
!! TTGATTTAGATAAATCTTGA+GGG + Chr1:98092185-98092204 MsG0180005960.01.T01:intron 20.0%
!!! AAAAAAAAGTATGAAACAGA+AGG + Chr1:98092273-98092292 MsG0180005960.01.T01:intron 20.0%
!!! AACTTGTTTACTACTAAATA+TGG + Chr1:98093835-98093854 MsG0180005960.01.T01:CDS 20.0%
!!! AAGTTTGAAATAAGTGAAAA+AGG - Chr1:98093556-98093575 None:intergenic 20.0%
!!! GGACGTATTTATAATTTTAT+AGG + Chr1:98093577-98093596 MsG0180005960.01.T01:intron 20.0%
!!! TAACTTATTTTAATGTTGTG+AGG - Chr1:98092802-98092821 None:intergenic 20.0%
!!! TACAAGTTTGATCTTTTAAA+TGG + Chr1:98092302-98092321 MsG0180005960.01.T01:intron 20.0%
!!! TACTTATTGAGTTTTTAAAC+AGG + Chr1:98093644-98093663 MsG0180005960.01.T01:intron 20.0%
!!! TATAATTTTATAGGATGCTA+CGG + Chr1:98093586-98093605 MsG0180005960.01.T01:intron 20.0%
!!! TGTTTGAAATGATTTTCAAA+AGG + Chr1:98093492-98093511 MsG0180005960.01.T01:intron 20.0%
!!! TTGTTGTTATGACAAAAATA+TGG + Chr1:98091205-98091224 MsG0180005960.01.T01:five_prime_UTR 20.0%
!!! TTTTACTTAGAATTTGAGTT+GGG + Chr1:98094685-98094704 MsG0180005960.01.T01:intron 20.0%
!!! TTTTCACTTATTTCAAACTT+GGG + Chr1:98093556-98093575 MsG0180005960.01.T01:intron 20.0%
!!! TTTTTACTTAGAATTTGAGT+TGG + Chr1:98094684-98094703 MsG0180005960.01.T01:intron 20.0%
!!! TTTTTCACTTATTTCAAACT+TGG + Chr1:98093555-98093574 MsG0180005960.01.T01:intron 20.0%
! AAAAACCAATGAGTTAAGTT+AGG - Chr1:98094916-98094935 None:intergenic 25.0%
! ACAAGGAACATGATATTAAA+TGG - Chr1:98094984-98095003 None:intergenic 25.0%
! AGCAAAAATTATACTTGCAA+TGG - Chr1:98093774-98093793 None:intergenic 25.0%
! AGTTTGAACTGAAAATAAAG+AGG - Chr1:98092065-98092084 None:intergenic 25.0%
! ATTACAAGCTGAAAAACTAT+TGG - Chr1:98095397-98095416 None:intergenic 25.0%
! ATTTCAATCCTCTGATATAT+TGG + Chr1:98095575-98095594 MsG0180005960.01.T01:CDS 25.0%
! CATAATCATGTTGTATGAAA+AGG - Chr1:98095045-98095064 None:intergenic 25.0%
! CATTCGAGAACAAAATATAT+GGG + Chr1:98091772-98091791 MsG0180005960.01.T01:CDS 25.0%
! CTTGATTTAGATAAATCTTG+AGG + Chr1:98092184-98092203 MsG0180005960.01.T01:intron 25.0%
! GCTGAAAAAATTTCAATGAA+TGG - Chr1:98093532-98093551 None:intergenic 25.0%
! GTTATATCGTTTGAACAATT+TGG + Chr1:98095879-98095898 MsG0180005960.01.T01:three_prime_UTR 25.0%
! TCATTCGAGAACAAAATATA+TGG + Chr1:98091771-98091790 MsG0180005960.01.T01:CDS 25.0%
! TCTTAAATGTCTGTTCTTAT+TGG + Chr1:98091878-98091897 MsG0180005960.01.T01:intron 25.0%
! TTGTGTCTAAGAAAAAAAGA+AGG + Chr1:98091231-98091250 MsG0180005960.01.T01:five_prime_UTR 25.0%
!! CTTTTAACAAAGAAGAAATC+GGG - Chr1:98091409-98091428 None:intergenic 25.0%
!! GCTTTTAACAAAGAAGAAAT+CGG - Chr1:98091410-98091429 None:intergenic 25.0%
!! TTGATCTTTTAAATGGACAT+AGG + Chr1:98092309-98092328 MsG0180005960.01.T01:intron 25.0%
!!! AATTTACAAGCCAGTTTTAT+AGG - Chr1:98094531-98094550 None:intergenic 25.0%
!!! ATAAGCTATTTCTATAGCAA+AGG + Chr1:98092408-98092427 MsG0180005960.01.T01:intron 25.0%
!!! ATTATTTCTGAATCTTCATG+AGG + Chr1:98092102-98092121 MsG0180005960.01.T01:intron 25.0%
!!! ATTTACAAGCCAGTTTTATA+GGG - Chr1:98094530-98094549 None:intergenic 25.0%
!!! CAGTTTTAGTATCATTGAAT+TGG - Chr1:98095548-98095567 None:intergenic 25.0%
!!! GAATTGCGTTGTTTTTAATT+AGG + Chr1:98091739-98091758 MsG0180005960.01.T01:intron 25.0%
!!! TAGTTTTTCAGCTTGTAATA+CGG + Chr1:98095398-98095417 MsG0180005960.01.T01:CDS 25.0%
!!! TATAAAACTGGCTTGTAAAT+TGG + Chr1:98094530-98094549 MsG0180005960.01.T01:intron 25.0%
!!! TTATTTCTGAATCTTCATGA+GGG + Chr1:98092103-98092122 MsG0180005960.01.T01:intron 25.0%
!!! TTTTCTTAGAATTTGGGTTT+GGG + Chr1:98094492-98094511 MsG0180005960.01.T01:intron 25.0%
!!! TTTTTCTTAGAATTTGGGTT+TGG + Chr1:98094491-98094510 MsG0180005960.01.T01:intron 25.0%
AAAGAAACACATAAGATGCA+TGG - Chr1:98094949-98094968 None:intergenic 30.0%
AAATATCCTTGTATATCTGC+AGG + Chr1:98094659-98094678 MsG0180005960.01.T01:intron 30.0%
AAATTTCCTCTTATATCTGC+AGG + Chr1:98094466-98094485 MsG0180005960.01.T01:intron 30.0%
AAGAACCAATTGCTAGAATT+CGG + Chr1:98091650-98091669 MsG0180005960.01.T01:CDS 30.0%
AATTTCCTCTTATATCTGCA+GGG + Chr1:98094467-98094486 MsG0180005960.01.T01:intron 30.0%
ACAAAGTTAAGATCAACTCT+AGG + Chr1:98096023-98096042 MsG0180005960.01.T01:three_prime_UTR 30.0%
ACATAGGCAGAATAGATTTA+GGG + Chr1:98092325-98092344 MsG0180005960.01.T01:intron 30.0%
ACTCATAAGATTCTACCATT+GGG + Chr1:98092705-98092724 MsG0180005960.01.T01:intron 30.0%
AGAAGAATACAATCTAGCAT+GGG + Chr1:98094104-98094123 MsG0180005960.01.T01:CDS 30.0%
ATAATTACAAGTTTGCCCAA+TGG - Chr1:98092723-98092742 None:intergenic 30.0%
ATATGACTGATGGTAAAACA+TGG - Chr1:98096155-98096174 None:intergenic 30.0%
ATGTTCAACTCAAACAAATG+CGG + Chr1:98091596-98091615 MsG0180005960.01.T01:CDS 30.0%
ATTTGATGTGCTAAAAAGTG+AGG + Chr1:98092244-98092263 MsG0180005960.01.T01:intron 30.0%
CAAACTACAGTGAAGTATAT+TGG - Chr1:98095231-98095250 None:intergenic 30.0%
CAATTCACCAAAAGATTTGA+AGG - Chr1:98091681-98091700 None:intergenic 30.0%
CAGCAGGATAATATATTGTT+CGG - Chr1:98093341-98093360 None:intergenic 30.0%
CATCTATCATCAATTGTAGT+TGG + Chr1:98094270-98094289 MsG0180005960.01.T01:intron 30.0%
CCTTCATTCTCTACATAATA+GGG + Chr1:98093724-98093743 MsG0180005960.01.T01:intron 30.0%
CTATACAAATCAGTACAGAA+TGG + Chr1:98092032-98092051 MsG0180005960.01.T01:intron 30.0%
CTGTGAGTTATCTTTAGTTA+TGG + Chr1:98093914-98093933 MsG0180005960.01.T01:intron 30.0%
GAAAAATCATGAAGATCTAC+TGG + Chr1:98094155-98094174 MsG0180005960.01.T01:CDS 30.0%
GAAATCGGGTAATTAAGATT+AGG - Chr1:98091395-98091414 None:intergenic 30.0%
GTTATGAACATCTTGAATGA+TGG - Chr1:98092840-98092859 None:intergenic 30.0%
TACTTCTCAACTGTAGTATA+AGG + Chr1:98095256-98095275 MsG0180005960.01.T01:intron 30.0%
TACTTCTGACTCTCAATTAT+AGG - Chr1:98091848-98091867 None:intergenic 30.0%
TAGAAAGAATAGAAGCTTCA+AGG - Chr1:98095467-98095486 None:intergenic 30.0%
TATGAAAACGTGGTTATAAG+TGG - Chr1:98094566-98094585 None:intergenic 30.0%
! AAGCTACATTCTAGAAAACA+AGG - Chr1:98095001-98095020 None:intergenic 30.0%
! AATTTTATGTCCAACAGTGA+AGG - Chr1:98094213-98094232 None:intergenic 30.0%
! AGAGTTGATCTTAACTTTGT+AGG - Chr1:98096023-98096042 None:intergenic 30.0%
! AGATCAGATTATGTCTTTTG+AGG - Chr1:98092888-98092907 None:intergenic 30.0%
!! AGGGCTTTTTCTTAGAATTT+GGG + Chr1:98094486-98094505 MsG0180005960.01.T01:intron 30.0%
!! GTTATTTTGTTCATCTGTGA+TGG - Chr1:98092780-98092799 None:intergenic 30.0%
!! TTTACAAGCCAGTTTTATAG+GGG - Chr1:98094529-98094548 None:intergenic 30.0%
!!! AATTTTAAGGTTTGGTCCTA+CGG - Chr1:98093293-98093312 None:intergenic 30.0%
!!! ACCATACAAGCTAGTTTTAT+AGG - Chr1:98094724-98094743 None:intergenic 30.0%
!!! ACTATTGGAATTGTTTTTGC+TGG - Chr1:98095382-98095401 None:intergenic 30.0%
!!! CATACAAGCTAGTTTTATAG+GGG - Chr1:98094722-98094741 None:intergenic 30.0%
!!! CCATACAAGCTAGTTTTATA+GGG - Chr1:98094723-98094742 None:intergenic 30.0%
!!! CTATTGGAATTGTTTTTGCT+GGG - Chr1:98095381-98095400 None:intergenic 30.0%
!!! TCACTTTTTAGCACATCAAA+TGG - Chr1:98092245-98092264 None:intergenic 30.0%
!!! TTGCGTTGTTTTTAATTAGG+TGG + Chr1:98091742-98091761 MsG0180005960.01.T01:intron 30.0%
AAAAGTCCTGCAGATATACA+AGG - Chr1:98094668-98094687 None:intergenic 35.0%
AAACACCAAACAATTTGCAC+TGG + Chr1:98093949-98093968 MsG0180005960.01.T01:intron 35.0%
ACATTGTTAAGACCTTACTG+CGG + Chr1:98095753-98095772 MsG0180005960.01.T01:three_prime_UTR 35.0%
ACTAATTCTTCCTTCACTGT+TGG + Chr1:98094200-98094219 MsG0180005960.01.T01:intron 35.0%
ACTGGATGAGATTCAAAACT+TGG - Chr1:98094769-98094788 None:intergenic 35.0%
AGAACCAATTGCTAGAATTC+GGG + Chr1:98091651-98091670 MsG0180005960.01.T01:CDS 35.0%
AGTTACTACGAACTTAGTCT+TGG - Chr1:98092865-98092884 None:intergenic 35.0%
ATACTCCAGTGCAAATTGTT+TGG - Chr1:98093957-98093976 None:intergenic 35.0%
ATCCTCTGATATATTGGAGA+AGG + Chr1:98095581-98095600 MsG0180005960.01.T01:CDS 35.0%
ATCTGGAGAGATAAAACTCA+AGG + Chr1:98094065-98094084 MsG0180005960.01.T01:CDS 35.0%
ATGGTAGGATTGTTTCATGT+TGG - Chr1:98093142-98093161 None:intergenic 35.0%
ATTACCCGAATTCTAGCAAT+TGG - Chr1:98091658-98091677 None:intergenic 35.0%
CAGAAGAATACAATCTAGCA+TGG + Chr1:98094103-98094122 MsG0180005960.01.T01:CDS 35.0%
CATATATTCAATGTTGCAGC+TGG - Chr1:98093471-98093490 None:intergenic 35.0%
CATGATATTAAATGGCATCG+TGG - Chr1:98094976-98094995 None:intergenic 35.0%
CCCTATTATGTAGAGAATGA+AGG - Chr1:98093727-98093746 None:intergenic 35.0%
CTAAAACTGCAGCAGAATTT+AGG + Chr1:98094133-98094152 MsG0180005960.01.T01:CDS 35.0%
CTAAATCGATGAACTTTGCT+TGG + Chr1:98095715-98095734 MsG0180005960.01.T01:three_prime_UTR 35.0%
CTTAATCAACTCTTTAGCAG+AGG + Chr1:98091331-98091350 MsG0180005960.01.T01:CDS 35.0%
GAAAAAAAGAAGGTGATCTG+AGG + Chr1:98091241-98091260 MsG0180005960.01.T01:five_prime_UTR 35.0%
GAACAGACATTTAAGAGCTA+TGG - Chr1:98091874-98091893 None:intergenic 35.0%
GACATAGGCAGAATAGATTT+AGG + Chr1:98092324-98092343 MsG0180005960.01.T01:intron 35.0%
GACTCATAAGATTCTACCAT+TGG + Chr1:98092704-98092723 MsG0180005960.01.T01:intron 35.0%
GATAAAACTCAAGGTCTTGA+CGG + Chr1:98094074-98094093 MsG0180005960.01.T01:CDS 35.0%
GATAGATGCAAGATAGCATA+AGG - Chr1:98094258-98094277 None:intergenic 35.0%
GCCTTCATTCTCTACATAAT+AGG + Chr1:98093723-98093742 MsG0180005960.01.T01:intron 35.0%
GTTGATCTTAACTTTGTAGG+TGG - Chr1:98096020-98096039 None:intergenic 35.0%
TGAAGGCTTAGAGTTTGATT+AGG - Chr1:98093710-98093729 None:intergenic 35.0%
TGCCATCTTAGAATTGAGTT+AGG + Chr1:98094890-98094909 MsG0180005960.01.T01:intron 35.0%
TGGACACGTAAATGTATCAA+AGG - Chr1:98095211-98095230 None:intergenic 35.0%
TTAGGCCTAACTTAACTCAT+TGG + Chr1:98094908-98094927 MsG0180005960.01.T01:intron 35.0%
TTCTTGTCATATTACCTGCA+GGG + Chr1:98095312-98095331 MsG0180005960.01.T01:intron 35.0%
TTGACCAGTCTGCAAAAATT+GGG - Chr1:98091632-98091651 None:intergenic 35.0%
TTTCTTGTCATATTACCTGC+AGG + Chr1:98095311-98095330 MsG0180005960.01.T01:intron 35.0%
! AGAAAACAGGTTGAAGAGAA+CGG + Chr1:98092972-98092991 MsG0180005960.01.T01:intron 35.0%
! ATTTCCCAATTTTTGCAGAC+TGG + Chr1:98091625-98091644 MsG0180005960.01.T01:CDS 35.0%
! CATACTGAATCGATTTAGCA+AGG - Chr1:98096080-98096099 None:intergenic 35.0%
! CCCTATAAAACTAGCTTGTA+TGG + Chr1:98094720-98094739 MsG0180005960.01.T01:intron 35.0%
! GAGAAATATTTTCTGAGCGA+AGG + Chr1:98096045-98096064 MsG0180005960.01.T01:three_prime_UTR 35.0%
! GGCTTATTTGAGTTATCTAG+TGG - Chr1:98092584-98092603 None:intergenic 35.0%
! GGGTAATCCTTCAAATCTTT+TGG + Chr1:98091671-98091690 MsG0180005960.01.T01:intron 35.0%
! GTATAATTTTTGCTGCTCCT+AGG + Chr1:98093780-98093799 MsG0180005960.01.T01:intron 35.0%
! TAAAACTAGCTTGTATGGTG+AGG + Chr1:98094725-98094744 MsG0180005960.01.T01:intron 35.0%
! TCAACCTGTTTTCTATCACA+AGG - Chr1:98092966-98092985 None:intergenic 35.0%
!! ATGGGCTGCATATGAAATTT+TGG + Chr1:98091790-98091809 MsG0180005960.01.T01:CDS 35.0%
!! CAGGGCTTTTTCTTAGAATT+TGG + Chr1:98094485-98094504 MsG0180005960.01.T01:intron 35.0%
!! TTACAAGCCAGTTTTATAGG+GGG - Chr1:98094528-98094547 None:intergenic 35.0%
!! TTGAGTTTTATCTCTCCAGA+TGG - Chr1:98094066-98094085 None:intergenic 35.0%
AAAAGCCCTGCAGATATAAG+AGG - Chr1:98094475-98094494 None:intergenic 40.0%
AACACAGGCAAAAAAACAGC+AGG - Chr1:98093357-98093376 None:intergenic 40.0%
AGCCTTCTCCAATATATCAG+AGG - Chr1:98095586-98095605 None:intergenic 40.0%
AGGACTGAGATATGAAAACG+TGG - Chr1:98094576-98094595 None:intergenic 40.0%
ATAAGTGACTCTAGCTGTGT+GGG + Chr1:98094626-98094645 MsG0180005960.01.T01:intron 40.0%
ATCATTGGAGATCGTTGTTG+TGG - Chr1:98093180-98093199 None:intergenic 40.0%
ATCCACACCACAATGAAAAC+AGG + Chr1:98092927-98092946 MsG0180005960.01.T01:intron 40.0%
CAATTATAGGTACACGTGCA+AGG - Chr1:98091835-98091854 None:intergenic 40.0%
CACCTTGTAAATCCTGACAT+GGG + Chr1:98095908-98095927 MsG0180005960.01.T01:three_prime_UTR 40.0%
CAGAATCAAGTAGTGAGAAC+GGG - Chr1:98095130-98095149 None:intergenic 40.0%
CCAGAATCAAGTAGTGAGAA+CGG - Chr1:98095131-98095150 None:intergenic 40.0%
CTTGACCAGTCTGCAAAAAT+TGG - Chr1:98091633-98091652 None:intergenic 40.0%
GAACTTTGCTTGGTATCTCA+AGG + Chr1:98095725-98095744 MsG0180005960.01.T01:three_prime_UTR 40.0%
GGAAAAACTGACACATCATG+AGG - Chr1:98094402-98094421 None:intergenic 40.0%
GTACAGTAAATACCGCAGTA+AGG - Chr1:98095768-98095787 None:intergenic 40.0%
GTTCTGATGTGCAATAAGTC+TGG - Chr1:98093818-98093837 None:intergenic 40.0%
TAAAGCCAAGTTCTCTCTGT+TGG + Chr1:98095985-98096004 MsG0180005960.01.T01:three_prime_UTR 40.0%
TACAGAAAGTGATCACTCTG+TGG - Chr1:98091982-98092001 None:intergenic 40.0%
TACGCCTTGTGATAGAAAAC+AGG + Chr1:98092959-98092978 MsG0180005960.01.T01:intron 40.0%
TCAACTCAAACAAATGCGGA+AGG + Chr1:98091600-98091619 MsG0180005960.01.T01:CDS 40.0%
TCACTTGCACATAGTGACTT+TGG + Chr1:98095657-98095676 MsG0180005960.01.T01:CDS 40.0%
TCATGCGTTTAAAAAGCCCA+GGG + Chr1:98093066-98093085 MsG0180005960.01.T01:intron 40.0%
TCCACACCACAATGAAAACA+GGG + Chr1:98092928-98092947 MsG0180005960.01.T01:intron 40.0%
TCTGGTATATCAGAACACCT+AGG - Chr1:98093800-98093819 None:intergenic 40.0%
TGACTTTGGATCATTGAAGC+TGG + Chr1:98095671-98095690 MsG0180005960.01.T01:CDS 40.0%
TGTGCTAAAAAGTGAGGAAC+TGG + Chr1:98092250-98092269 MsG0180005960.01.T01:intron 40.0%
TTCATGCGTTTAAAAAGCCC+AGG + Chr1:98093065-98093084 MsG0180005960.01.T01:intron 40.0%
TTCTCACTACTTGATTCTGG+TGG + Chr1:98095131-98095150 MsG0180005960.01.T01:intron 40.0%
TTGCAATAATATCCGGTGAC+AGG - Chr1:98094353-98094372 None:intergenic 40.0%
TTGTCTGTGTATGTTGACGT+TGG + Chr1:98093423-98093442 MsG0180005960.01.T01:intron 40.0%
TTGTGCAAGATTGTGAAGCA+TGG - Chr1:98092008-98092027 None:intergenic 40.0%
TTTGCTTGGTATCTCAAGGT+TGG + Chr1:98095729-98095748 MsG0180005960.01.T01:three_prime_UTR 40.0%
TTTGGATCATTGAAGCTGGA+AGG + Chr1:98095675-98095694 MsG0180005960.01.T01:CDS 40.0%
! AACTTCCCCTGTTTTCATTG+TGG - Chr1:98092937-98092956 None:intergenic 40.0%
! ATCATGAGGCAAGGAGTATA+AGG - Chr1:98094388-98094407 None:intergenic 40.0%
! GGCCTAACTCAATTCTAAGA+TGG - Chr1:98094895-98094914 None:intergenic 40.0%
! TTGGCCATCCATTTTGCAAT+GGG - Chr1:98093123-98093142 None:intergenic 40.0%
! TTTTTGCCTGTGTTGTACCT+CGG + Chr1:98093363-98093382 MsG0180005960.01.T01:intron 40.0%
!! CTTAGAATTTGAGTTGGGTC+TGG + Chr1:98094690-98094709 MsG0180005960.01.T01:intron 40.0%
!! TACAAGCCAGTTTTATAGGG+GGG - Chr1:98094527-98094546 None:intergenic 40.0%
!!! CGTTTTTTCTACTCGTTGGT+GGG + Chr1:98091354-98091373 MsG0180005960.01.T01:intron 40.0%
!!! TGTTTTTTCGTGCCTACGAT+GGG + Chr1:98096102-98096121 MsG0180005960.01.T01:three_prime_UTR 40.0%
AAAGCAGACCCTTAGAGATG+AGG + Chr1:98092608-98092627 MsG0180005960.01.T01:intron 45.0%
AACTGACACATCATGAGGCA+AGG - Chr1:98094397-98094416 None:intergenic 45.0%
AAGGCCCATTGCAAAATGGA+TGG + Chr1:98093116-98093135 MsG0180005960.01.T01:intron 45.0%
AATATCCGGTGACAGGATCA+AGG - Chr1:98094346-98094365 None:intergenic 45.0%
ACAGCATGTTACCATGGTCA+TGG + Chr1:98093212-98093231 MsG0180005960.01.T01:intron 45.0%
ACATAATAGGGAATGCCCGT+CGG + Chr1:98093736-98093755 MsG0180005960.01.T01:intron 45.0%
ACCAGTGATTGACATGCTAC+AGG - Chr1:98095170-98095189 None:intergenic 45.0%
ACGATTTGCAGAAGCTATGG+CGG - Chr1:98095613-98095632 None:intergenic 45.0%
ACTTCATGCGTGAAATTGCG+AGG - Chr1:98091558-98091577 None:intergenic 45.0%
AGGTCCTACATAGGATTGGA+AGG + Chr1:98092649-98092668 MsG0180005960.01.T01:intron 45.0%
ATGGTAACATGCTGTGATGC+AGG - Chr1:98093207-98093226 None:intergenic 45.0%
ATTCAATGTTGCAGCTGGAG+TGG - Chr1:98093466-98093485 None:intergenic 45.0%
CAACGGAACTTTGATGTGCT+TGG + Chr1:98095937-98095956 MsG0180005960.01.T01:three_prime_UTR 45.0%
CACCCATGTCAGGATTTACA+AGG - Chr1:98095913-98095932 None:intergenic 45.0%
CCAAGGTAGTCAAAATCACG+AGG - Chr1:98093265-98093284 None:intergenic 45.0%
CCACACCACAATGAAAACAG+GGG + Chr1:98092929-98092948 MsG0180005960.01.T01:intron 45.0%
CCGTTCTCACTACTTGATTC+TGG + Chr1:98095128-98095147 MsG0180005960.01.T01:intron 45.0%
CTTTCAGTTAGTGCTCCATC+TGG + Chr1:98094048-98094067 MsG0180005960.01.T01:CDS 45.0%
GAACAGGGCATAAAGGACAA+CGG + Chr1:98093014-98093033 MsG0180005960.01.T01:intron 45.0%
GAGTCACTTATCAATGCTCG+TGG - Chr1:98094617-98094636 None:intergenic 45.0%
GATAAGTGACTCTAGCTGTG+TGG + Chr1:98094625-98094644 MsG0180005960.01.T01:intron 45.0%
GCACCTTGTAAATCCTGACA+TGG + Chr1:98095907-98095926 MsG0180005960.01.T01:three_prime_UTR 45.0%
GGTCCTACATAGGATTGGAA+GGG + Chr1:98092650-98092669 MsG0180005960.01.T01:intron 45.0%
GTCCTACATAGGATTGGAAG+GGG + Chr1:98092651-98092670 MsG0180005960.01.T01:intron 45.0%
GTGTGTTAAGAGTCTCACAC+TGG - Chr1:98094787-98094806 None:intergenic 45.0%
TCAAAATCACGAGGTCACGT+AGG - Chr1:98093256-98093275 None:intergenic 45.0%
TCAAACACGAGGTCCTACAT+AGG + Chr1:98092640-98092659 MsG0180005960.01.T01:intron 45.0%
TCTGAACTTCGTCCTGATTC+AGG + Chr1:98093880-98093899 MsG0180005960.01.T01:CDS 45.0%
TGCACGATTTGCAGAAGCTA+TGG - Chr1:98095616-98095635 None:intergenic 45.0%
TGCATCACAGCATGTTACCA+TGG + Chr1:98093206-98093225 MsG0180005960.01.T01:intron 45.0%
TGCTACCAACAGAGAGAACT+TGG - Chr1:98095993-98096012 None:intergenic 45.0%
TGTGATGCAGGCAAGATCAT+TGG - Chr1:98093195-98093214 None:intergenic 45.0%
TTCATCCTTGATCCTGTCAC+CGG + Chr1:98094338-98094357 MsG0180005960.01.T01:intron 45.0%
TTGTCATATTACCTGCAGGG+TGG + Chr1:98095315-98095334 MsG0180005960.01.T01:intron 45.0%
! AAGGGTTTTGCGAAAACCCT+GGG - Chr1:98093085-98093104 None:intergenic 45.0%
! AGCGTGGTGATTTAGTTTCG+TGG + Chr1:98091270-98091289 MsG0180005960.01.T01:five_prime_UTR 45.0%
! CTCTAAGGGTCTGCTTTGAT+TGG - Chr1:98092605-98092624 None:intergenic 45.0%
! GTTGGCCATCCATTTTGCAA+TGG - Chr1:98093124-98093143 None:intergenic 45.0%
! TACACTGGCCTCATCTCTAA+GGG - Chr1:98092619-98092638 None:intergenic 45.0%
!! GTTCTCTCTGTTGGTAGCAA+TGG + Chr1:98095994-98096013 MsG0180005960.01.T01:three_prime_UTR 45.0%
!!! CCTCGTGATTTTGACTACCT+TGG + Chr1:98093262-98093281 MsG0180005960.01.T01:intron 45.0%
!!! GAGGCGTTTTTTCTACTCGT+TGG + Chr1:98091350-98091369 MsG0180005960.01.T01:CDS 45.0%
!!! GCGTTTTTTCTACTCGTTGG+TGG + Chr1:98091353-98091372 MsG0180005960.01.T01:intron 45.0%
!!! GTGTTTTTTCGTGCCTACGA+TGG + Chr1:98096101-98096120 MsG0180005960.01.T01:three_prime_UTR 45.0%
AAACCCTTCCCGTTTCAGCA+AGG + Chr1:98093097-98093116 MsG0180005960.01.T01:intron 50.0%
AGCTCACCCCCCTATAAAAC+TGG + Chr1:98094518-98094537 MsG0180005960.01.T01:intron 50.0%
ATCAAGGATGAAGGTGGTCG+CGG - Chr1:98094330-98094349 None:intergenic 50.0%
ATGGCTTCTCGCAATTCCGA+CGG - Chr1:98093755-98093774 None:intergenic 50.0%
CAACGGAGAATGACGCAGTT+AGG + Chr1:98093031-98093050 MsG0180005960.01.T01:intron 50.0%
CACCCCTTCCAATCCTATGT+AGG - Chr1:98092656-98092675 None:intergenic 50.0%
CACGAGGTCCTACATAGGAT+TGG + Chr1:98092645-98092664 MsG0180005960.01.T01:intron 50.0%
CAGCAAGGCCCATTGCAAAA+TGG + Chr1:98093112-98093131 MsG0180005960.01.T01:intron 50.0%
CCACAACTAGAGTCGCTTCT+CGG - Chr1:98094432-98094451 None:intergenic 50.0%
CCTGACATGGGTGAACACAA+CGG + Chr1:98095920-98095939 MsG0180005960.01.T01:three_prime_UTR 50.0%
GACAGGATCAAGGATGAAGG+TGG - Chr1:98094336-98094355 None:intergenic 50.0%
GACCTCGTGTTTGACTACAC+TGG - Chr1:98092634-98092653 None:intergenic 50.0%
GAGGAGAGAACAGGGCATAA+AGG + Chr1:98093007-98093026 MsG0180005960.01.T01:intron 50.0%
GGTAGAGCTGTCACATCAAG+AGG - Chr1:98094596-98094615 None:intergenic 50.0%
GGTGACAGGATCAAGGATGA+AGG - Chr1:98094339-98094358 None:intergenic 50.0%
GTTGAAGAGAACGGCGTAGA+GGG + Chr1:98092981-98093000 MsG0180005960.01.T01:intron 50.0%
TCGAGATCGCGAGTTATGGT+AGG - Chr1:98093157-98093176 None:intergenic 50.0%
TCTTGCATTGAGCCCATCGT+AGG - Chr1:98096117-98096136 None:intergenic 50.0%
TGATCTGAGGAAGCAAAGCG+TGG + Chr1:98091254-98091273 MsG0180005960.01.T01:five_prime_UTR 50.0%
TGCAATGGGCCTTGCTGAAA+CGG - Chr1:98093109-98093128 None:intergenic 50.0%
TGCGTGAAATTGCGAGGTTG+AGG - Chr1:98091552-98091571 None:intergenic 50.0%
TTACCATGGTCATGGATCGC+AGG + Chr1:98093220-98093239 MsG0180005960.01.T01:intron 50.0%
TTGAAGAGAACGGCGTAGAG+GGG + Chr1:98092982-98093001 MsG0180005960.01.T01:intron 50.0%
TTTGCACCGAGGTACAACAC+AGG - Chr1:98093372-98093391 None:intergenic 50.0%
! AGATGTCCAGTTGGTGTGAG+GGG - Chr1:98094811-98094830 None:intergenic 50.0%
! CAGATGTCCAGTTGGTGTGA+GGG - Chr1:98094812-98094831 None:intergenic 50.0%
! CCCCTGTTTTCATTGTGGTG+TGG - Chr1:98092932-98092951 None:intergenic 50.0%
! CTACACTGGCCTCATCTCTA+AGG - Chr1:98092620-98092639 None:intergenic 50.0%
! GAAGGGTTTTGCGAAAACCC+TGG - Chr1:98093086-98093105 None:intergenic 50.0%
! GTTGTACCTCGGTGCAAACA+TGG + Chr1:98093374-98093393 MsG0180005960.01.T01:intron 50.0%
!! GGAGCAAAGCAAGTTGGTGT+CGG + Chr1:98095336-98095355 MsG0180005960.01.T01:CDS 50.0%
ATGGGTCCATGTTTGCACCG+AGG - Chr1:98093383-98093402 None:intergenic 55.0%
CAGGGTGGAGCAAAGCAAGT+TGG + Chr1:98095330-98095349 MsG0180005960.01.T01:intron 55.0%
CCGAGAAGCGACTCTAGTTG+TGG + Chr1:98094429-98094448 MsG0180005960.01.T01:intron 55.0%
CCGTTGTGTTCACCCATGTC+AGG - Chr1:98095923-98095942 None:intergenic 55.0%
CCTCACACCAACTGGACATC+TGG + Chr1:98094810-98094829 MsG0180005960.01.T01:intron 55.0%
CTCGATAGCAGGTGGTCTGA+TGG + Chr1:98094849-98094868 MsG0180005960.01.T01:intron 55.0%
GACTACCTTGGATGAGCCGT+AGG + Chr1:98093274-98093293 MsG0180005960.01.T01:intron 55.0%
GATCCTGCGATCCATGACCA+TGG - Chr1:98093226-98093245 None:intergenic 55.0%
GATGCAAGTGGCTCGATAGC+AGG + Chr1:98094838-98094857 MsG0180005960.01.T01:intron 55.0%
GCAATGGGCCTTGCTGAAAC+GGG - Chr1:98093108-98093127 None:intergenic 55.0%
GCTATCGAGCCACTTGCATC+AGG - Chr1:98094838-98094857 None:intergenic 55.0%
GGCCAGTGTAGTCAAACACG+AGG + Chr1:98092629-98092648 MsG0180005960.01.T01:intron 55.0%
GGTTGAAGAGAACGGCGTAG+AGG + Chr1:98092980-98092999 MsG0180005960.01.T01:intron 55.0%
GTGCGATTCACGCCTGAATC+AGG - Chr1:98093895-98093914 None:intergenic 55.0%
GTGGTCGAGATCGCGAGTTA+TGG - Chr1:98093161-98093180 None:intergenic 55.0%
TCAAGGATGAAGGTGGTCGC+GGG - Chr1:98094329-98094348 None:intergenic 55.0%
TCAGGCTCCAGATGTCCAGT+TGG - Chr1:98094820-98094839 None:intergenic 55.0%
TGGCTTCTCGCAATTCCGAC+GGG - Chr1:98093754-98093773 None:intergenic 55.0%
TTGGTCCTACGGCTCATCCA+AGG - Chr1:98093282-98093301 None:intergenic 55.0%
! CATCTGGAGCCTGATGCAAG+TGG + Chr1:98094826-98094845 MsG0180005960.01.T01:intron 55.0%
! CCAGATGTCCAGTTGGTGTG+AGG - Chr1:98094813-98094832 None:intergenic 55.0%
AAGAGAACGGCGTAGAGGGG+AGG + Chr1:98092985-98093004 MsG0180005960.01.T01:intron 60.0%
AGAGGGGAGGAGGAGAGAAC+AGG + Chr1:98092998-98093017 MsG0180005960.01.T01:intron 60.0%
CACACACCCCTCACACCAAC+TGG + Chr1:98094802-98094821 MsG0180005960.01.T01:intron 60.0%
CTTGCTTTGCTCCACCCTGC+AGG - Chr1:98095329-98095348 None:intergenic 60.0%
GAGGGGAGGAGGAGAGAACA+GGG + Chr1:98092999-98093018 MsG0180005960.01.T01:intron 60.0%
GCAAGTGGCTCGATAGCAGG+TGG + Chr1:98094841-98094860 MsG0180005960.01.T01:intron 60.0%
GGGCCTTGCTGAAACGGGAA+GGG - Chr1:98093103-98093122 None:intergenic 60.0%
TGGGCCTTGCTGAAACGGGA+AGG - Chr1:98093104-98093123 None:intergenic 60.0%
AGAACGGCGTAGAGGGGAGG+AGG + Chr1:98092988-98093007 MsG0180005960.01.T01:intron 65.0%
!! GAGTCGCTTCTCGGTGCTCG+TGG - Chr1:98094423-98094442 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98091167 98096283 98091167 ID=MsG0180005960.01;Name=MsG0180005960.01
Chr1 mRNA 98091167 98096283 98091167 ID=MsG0180005960.01.T01;Parent=MsG0180005960.01;Name=MsG0180005960.01.T01;_AED=0.42;_eAED=0.42;_QI=155|0.8|0.83|1|0.8|0.66|6|573|300
Chr1 exon 98091167 98091371 98091167 ID=MsG0180005960.01.T01:exon:16403;Parent=MsG0180005960.01.T01
Chr1 exon 98091540 98091672 98091540 ID=MsG0180005960.01.T01:exon:16404;Parent=MsG0180005960.01.T01
Chr1 exon 98091761 98091864 98091761 ID=MsG0180005960.01.T01:exon:16405;Parent=MsG0180005960.01.T01
Chr1 exon 98093819 98093915 98093819 ID=MsG0180005960.01.T01:exon:16406;Parent=MsG0180005960.01.T01
Chr1 exon 98094036 98094176 98094036 ID=MsG0180005960.01.T01:exon:16407;Parent=MsG0180005960.01.T01
Chr1 exon 98095333 98096283 98095333 ID=MsG0180005960.01.T01:exon:16408;Parent=MsG0180005960.01.T01
Chr1 five_prime_UTR 98091167 98091321 98091167 ID=MsG0180005960.01.T01:five_prime_utr;Parent=MsG0180005960.01.T01
Chr1 CDS 98091322 98091371 98091322 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 CDS 98091540 98091672 98091540 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 CDS 98091761 98091864 98091761 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 CDS 98093819 98093915 98093819 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 CDS 98094036 98094176 98094036 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 CDS 98095333 98095710 98095333 ID=MsG0180005960.01.T01:cds;Parent=MsG0180005960.01.T01
Chr1 three_prime_UTR 98095711 98096283 98095711 ID=MsG0180005960.01.T01:three_prime_utr;Parent=MsG0180005960.01.T01
Gene Sequence

>MsG0180005960.01.T01

ATGTCACTTCTTAATCAACTCTTTAGCAGAGGCGTTTTTTCTACTCGTTGTAAAACATGCCTCAACCTCGCAATTTCACGCATGAAGTTGCTACAAAACAAGCGAGATGTTCAACTCAAACAAATGCGGAAGGAGATTTCCCAATTTTTGCAGACTGGTCAAGAACCAATTGCTAGAATTCGGGTGGAGCATATCATTCGAGAACAAAATATATGGGCTGCATATGAAATTTTGGAGTTATTCTGCGAGTTCGTCCTTGCACGTGTACCTATAATTGAGAGTCAGAAACTTATTGCACATCAGAACTTGTTTACTACTAAATATGGGAAAGAATTTGTCACTGCAATATCTGAACTTCGTCCTGATTCAGGCGTGAATCGCACTATAATTGAAAAACTTTCAGTTAGTGCTCCATCTGGAGAGATAAAACTCAAGGTCTTGACGGATATTGCAGAAGAATACAATCTAGCATGGGATTCTTCTAAAACTGCAGCAGAATTTAGGAAAAATCATGAAGATCTACTGGGTGGAGCAAAGCAAGTTGGTGTCGGAGCTGCACTTTCTCATGCTCCCAGCAAAAACAATTCCAATAGTTTTTCAGCTTGTAATACGGAACAGTCTATCAAATCTACACACGATAAACAACAATATGAACACCTTGAAGCTTCTATTCTTTCTAACAATAATTCTTGGTTGAACACTAATGAAATTGAGCAGTCACACAAAAATAACGACGTCCAATTCAATGATACTAAAACTGAGACTATATTTCAATCCTCTGATATATTGGAGAAGGCTCGAGCCGCCATAGCTTCTGCAAATCGTGCAACTGCAGCTGCTCGTGCTGCTTCACTTGCACATAGTGACTTTGGATCATTGAAGCTGGAAGGCGAATCTTCATAG

Protein sequence

>MsG0180005960.01.T01

MSLLNQLFSRGVFSTRCKTCLNLAISRMKLLQNKRDVQLKQMRKEISQFLQTGQEPIARIRVEHIIREQNIWAAYEILELFCEFVLARVPIIESQKLIAHQNLFTTKYGKEFVTAISELRPDSGVNRTIIEKLSVSAPSGEIKLKVLTDIAEEYNLAWDSSKTAAEFRKNHEDLLGGAKQVGVGAALSHAPSKNNSNSFSACNTEQSIKSTHDKQQYEHLEASILSNNNSWLNTNEIEQSHKNNDVQFNDTKTETIFQSSDILEKARAAIASANRATAAARAASLAHSDFGSLKLEGESS*