Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027408.01.T01 | XP_003614631.1 | 92.453 | 318 | 20 | 1 | 1 | 318 | 1 | 314 | 0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027408.01.T01 | G7K1J5 | 92.453 | 318 | 20 | 1 | 1 | 318 | 1 | 314 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002074.01 | MsG0580027408.01 | 0.804091 | 2.550912e-49 | 1.303619e-46 |
| MsG0180003241.01 | MsG0580027408.01 | 0.823376 | 1.432054e-53 | 1.230768e-50 |
| MsG0180004809.01 | MsG0580027408.01 | 0.830885 | 2.282145e-55 | 2.436353e-52 |
| MsG0280011105.01 | MsG0580027408.01 | 0.825232 | 5.242817e-54 | 4.751065e-51 |
| MsG0280011288.01 | MsG0580027408.01 | 0.826562 | 2.534110e-54 | 2.384879e-51 |
| MsG0280011473.01 | MsG0580027408.01 | 0.812972 | 3.238534e-51 | 2.088266e-48 |
| MsG0380011674.01 | MsG0580027408.01 | 0.858899 | 5.999707e-63 | 1.555365e-59 |
| MsG0380014163.01 | MsG0580027408.01 | 0.829717 | 4.402956e-55 | 4.543572e-52 |
| MsG0380014913.01 | MsG0580027408.01 | 0.819705 | 1.009515e-52 | 7.826594e-50 |
| MsG0480019170.01 | MsG0580027408.01 | 0.811993 | 5.301519e-51 | 3.330427e-48 |
| MsG0480019395.01 | MsG0580027408.01 | 0.801036 | 1.088289e-48 | 5.145109e-46 |
| MsG0480020371.01 | MsG0580027408.01 | 0.817177 | 3.775119e-52 | 2.729606e-49 |
| MsG0480021914.01 | MsG0580027408.01 | 0.805644 | 1.208368e-49 | 6.426914e-47 |
| MsG0480021987.01 | MsG0580027408.01 | 0.833032 | 6.730048e-56 | 7.657320e-53 |
| MsG0580024205.01 | MsG0580027408.01 | 0.823090 | 1.669979e-53 | 1.423939e-50 |
| MsG0580025045.01 | MsG0580027408.01 | 0.839457 | 1.566800e-57 | 2.164987e-54 |
| MsG0580025236.01 | MsG0580027408.01 | 0.852439 | 4.612325e-61 | 9.638258e-58 |
| MsG0380017116.01 | MsG0580027408.01 | 0.802629 | 5.123091e-49 | 2.521799e-46 |
| MsG0480018188.01 | MsG0580027408.01 | 0.800172 | 1.632734e-48 | 7.551015e-46 |
| MsG0580027408.01 | MsG0580028980.01 | 0.817723 | 2.844110e-52 | 2.087541e-49 |
| MsG0580027408.01 | MsG0580029133.01 | 0.834090 | 3.663773e-56 | 4.302655e-53 |
| MsG0580027408.01 | MsG0680030621.01 | 0.824568 | 7.523416e-54 | 6.689396e-51 |
| MsG0580027408.01 | MsG0780039248.01 | 0.865763 | 4.664648e-65 | 1.535304e-61 |
| MsG0580027408.01 | MsG0780040505.01 | 0.806336 | 8.645122e-50 | 4.680042e-47 |
| MsG0580027408.01 | MsG0780040516.01 | 0.837592 | 4.747439e-57 | 6.196236e-54 |
| MsG0580027408.01 | MsG0780040741.01 | 0.801611 | 8.298708e-49 | 3.980348e-46 |
| MsG0580027408.01 | MsG0780041310.01 | 0.815154 | 1.068926e-51 | 7.312280e-49 |
| MsG0580027408.01 | MsG0880042329.01 | 0.810736 | 9.937458e-51 | 6.038153e-48 |
| MsG0580027408.01 | MsG0880043489.01 | 0.811057 | 8.467342e-51 | 5.189140e-48 |
| MsG0580027408.01 | MsG0880045914.01 | 0.813470 | 2.517920e-51 | 1.645837e-48 |
| MsG0280006781.01 | MsG0580027408.01 | 0.800838 | 1.194339e-48 | 5.617988e-46 |
| MsG0280006953.01 | MsG0580027408.01 | 0.823319 | 1.476392e-53 | 1.266909e-50 |
| MsG0280007048.01 | MsG0580027408.01 | 0.802439 | 5.607920e-49 | 2.747131e-46 |
| MsG0280008436.01 | MsG0580027408.01 | 0.810052 | 1.396008e-50 | 8.330347e-48 |
| MsG0280009386.01 | MsG0580027408.01 | 0.807910 | 4.012840e-50 | 2.262592e-47 |
| MsG0280009509.01 | MsG0580027408.01 | 0.826047 | 3.361323e-54 | 3.117421e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027408.01.T01 | MTR_5g056480 | 92.453 | 318 | 20 | 1 | 1 | 318 | 1 | 314 | 0.0 | 541 |
| MsG0580027408.01.T01 | MTR_1g110550 | 40.484 | 289 | 112 | 9 | 1 | 280 | 4 | 241 | 6.74e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027408.01.T01 | AT1G68440 | 33.129 | 326 | 179 | 9 | 1 | 309 | 1 | 304 | 1.66e-36 | 133 |
| MsG0580027408.01.T01 | AT1G25400 | 36.486 | 148 | 78 | 5 | 155 | 299 | 144 | 278 | 2.58e-14 | 72.4 |
| MsG0580027408.01.T01 | AT1G25400 | 36.486 | 148 | 78 | 5 | 155 | 299 | 144 | 278 | 2.58e-14 | 72.4 |
Find 75 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTACGGGAAACATTAA+TGG | 0.287710 | 5:+59990092 | MsG0580027408.01.T01:CDS |
| TCGTTGAGTCTATCGATTAA+TGG | 0.309567 | 5:-59989164 | None:intergenic |
| GTAATCTCGCAGTCGAGATA+TGG | 0.314723 | 5:+59989837 | MsG0580027408.01.T01:CDS |
| ACGAAGGTGGACGATGAAAA+TGG | 0.314900 | 5:-59989357 | None:intergenic |
| CTTAACAACGTTATCACTAT+TGG | 0.316917 | 5:-59989657 | None:intergenic |
| GTGATAACGTTGTTAAGCTT+TGG | 0.325270 | 5:+59989663 | MsG0580027408.01.T01:CDS |
| CTTTGGGACAGTATAGGATT+TGG | 0.332824 | 5:+59989680 | MsG0580027408.01.T01:CDS |
| TTGCTTTCAATTTCTGCAAA+TGG | 0.333771 | 5:+59989279 | MsG0580027408.01.T01:CDS |
| AACACGCTGCGCGTGGAATC+TGG | 0.336904 | 5:+59989920 | MsG0580027408.01.T01:CDS |
| TGCTTTCAATTTCTGCAAAT+GGG | 0.348348 | 5:+59989280 | MsG0580027408.01.T01:CDS |
| TGATAACGTTGTTAAGCTTT+GGG | 0.361870 | 5:+59989664 | MsG0580027408.01.T01:CDS |
| GACAGTATAGGATTTGGTTT+AGG | 0.399313 | 5:+59989686 | MsG0580027408.01.T01:CDS |
| TTGTTACGGATGAATCTTAC+GGG | 0.415731 | 5:+59990080 | MsG0580027408.01.T01:CDS |
| CCTGCGGAGACGATCACATC+TGG | 0.432622 | 5:-59989800 | None:intergenic |
| CGAGTTACAGGAAACAGTTA+TGG | 0.432779 | 5:+59989545 | MsG0580027408.01.T01:CDS |
| ATCACAACCACTTCCTTCAA+TGG | 0.443517 | 5:+59989239 | MsG0580027408.01.T01:CDS |
| TGCTGATGCTGTTATTGTTA+CGG | 0.444662 | 5:+59990066 | MsG0580027408.01.T01:CDS |
| GTTAAGCTTTGGGACAGTAT+AGG | 0.445462 | 5:+59989674 | MsG0580027408.01.T01:CDS |
| AACGGATTGGATTCCATTGA+AGG | 0.457478 | 5:-59989252 | None:intergenic |
| CTTGATGAAGATGACATAGA+TGG | 0.461410 | 5:-59989506 | None:intergenic |
| TGAAAGCAATGGAAACGGAT+TGG | 0.472954 | 5:-59989265 | None:intergenic |
| TCGTTGTCGAAGGTGATTGA+TGG | 0.476471 | 5:-59989398 | None:intergenic |
| GTGATTTGTGAAGGGAAAGA+TGG | 0.477961 | 5:-59989221 | None:intergenic |
| TGATTTGTGAAGGGAAAGAT+GGG | 0.488143 | 5:-59989220 | None:intergenic |
| AATCTGACGCGGATAATACT+TGG | 0.488206 | 5:+59990038 | MsG0580027408.01.T01:CDS |
| AGACTCAACGATTTCCAAGC+AGG | 0.489396 | 5:+59989176 | MsG0580027408.01.T01:CDS |
| GATTTCGATGATTACGAGGA+TGG | 0.489828 | 5:+59989713 | MsG0580027408.01.T01:CDS |
| TTGGATTCCATTGAAGGAAG+TGG | 0.497956 | 5:-59989246 | None:intergenic |
| TTTGCAGAAATTGAAAGCAA+TGG | 0.502375 | 5:-59989276 | None:intergenic |
| ATTGTTACGGATGAATCTTA+CGG | 0.506144 | 5:+59990079 | MsG0580027408.01.T01:CDS |
| AAAGTTTATGTTAGAGATGA+CGG | 0.508455 | 5:+59989953 | MsG0580027408.01.T01:CDS |
| GCCGTCGGTCGTAGCCGAGT+GGG | 0.511064 | 5:+59989883 | MsG0580027408.01.T01:CDS |
| TAATCTCGCAGTCGAGATAT+GGG | 0.515982 | 5:+59989838 | MsG0580027408.01.T01:CDS |
| CGTTAGTTTATCTTCGTCAT+CGG | 0.519809 | 5:+59989466 | MsG0580027408.01.T01:CDS |
| TTCGTTATCTTCGTCATCGG+AGG | 0.521784 | 5:-59989432 | None:intergenic |
| CATAGACGACAACGTAGTAT+TGG | 0.523774 | 5:+59989608 | MsG0580027408.01.T01:CDS |
| GGACGTCAACGTTTGACAGT+TGG | 0.524989 | 5:+59989974 | MsG0580027408.01.T01:CDS |
| GATGCGGCCGCAGAAGTTGA+AGG | 0.525538 | 5:-59989776 | None:intergenic |
| GAAATCATCGTCGTTGTCGA+AGG | 0.525729 | 5:-59989408 | None:intergenic |
| GAAATTGAAAGCAATGGAAA+CGG | 0.527809 | 5:-59989270 | None:intergenic |
| AGAAAAGTCAGTGTTCCGTT+AGG | 0.537364 | 5:+59990004 | MsG0580027408.01.T01:CDS |
| CGACCGACGGCTTCCGTCGT+CGG | 0.539535 | 5:-59989871 | None:intergenic |
| CCGTCGGTCGTAGCCGAGTG+GGG | 0.540475 | 5:+59989884 | MsG0580027408.01.T01:CDS |
| GGTGACTTTGTTGATGATGC+TGG | 0.548195 | 5:-59989336 | None:intergenic |
| CCAGATGTGATCGTCTCCGC+AGG | 0.548921 | 5:+59989800 | MsG0580027408.01.T01:CDS |
| GTGATCGTCTCCGCAGGAGA+AGG | 0.560004 | 5:+59989806 | MsG0580027408.01.T01:CDS |
| GCTTTCAATTTCTGCAAATG+GGG | 0.560368 | 5:+59989281 | MsG0580027408.01.T01:CDS |
| GGTGGGGAACACGCTGCGCG+TGG | 0.563432 | 5:+59989913 | MsG0580027408.01.T01:CDS |
| GTCGAAGGTGATTGATGGAA+GGG | 0.564506 | 5:-59989393 | None:intergenic |
| GGGACACTCGTCTCCGACGA+CGG | 0.568741 | 5:+59989858 | MsG0580027408.01.T01:CDS |
| GCAATGAATTGAAACCTGCT+TGG | 0.577118 | 5:-59989190 | None:intergenic |
| CCCCACTCGGCTACGACCGA+CGG | 0.583274 | 5:-59989884 | None:intergenic |
| CGCAGCGTGTTCCCCACCGT+GGG | 0.586011 | 5:-59989908 | None:intergenic |
| GAAGTGGTTGTGATTTGTGA+AGG | 0.591968 | 5:-59989230 | None:intergenic |
| TGTCGAAGGTGATTGATGGA+AGG | 0.594870 | 5:-59989394 | None:intergenic |
| GCAGAAGTTGAAGGCGCATG+TGG | 0.595970 | 5:-59989767 | None:intergenic |
| CTGACGCGGATAATACTTGG+TGG | 0.603373 | 5:+59990041 | MsG0580027408.01.T01:CDS |
| AACGTGTTCGAAACTCAAAA+CGG | 0.603538 | 5:+59989581 | MsG0580027408.01.T01:CDS |
| ACCACGTGCGCCTTCTCCTG+CGG | 0.604226 | 5:-59989816 | None:intergenic |
| TCTCCGACGACGGAAGCCGT+CGG | 0.605600 | 5:+59989868 | MsG0580027408.01.T01:CDS |
| CGTCGGTCGTAGCCGAGTGG+GGG | 0.611250 | 5:+59989885 | MsG0580027408.01.T01:CDS |
| GACGATCACATCTGGTGATG+CGG | 0.617092 | 5:-59989792 | None:intergenic |
| AGCCGTCGGTCGTAGCCGAG+TGG | 0.624990 | 5:+59989882 | MsG0580027408.01.T01:CDS |
| TCCGCAGGAGAAGGCGCACG+TGG | 0.637444 | 5:+59989815 | MsG0580027408.01.T01:CDS |
| TGACGCGGATAATACTTGGT+GGG | 0.643095 | 5:+59990042 | MsG0580027408.01.T01:CDS |
| TTTGTTTATCATGTCATACG+TGG | 0.648765 | 5:-59989744 | None:intergenic |
| ACGCTGCGCGTGGAATCTGG+CGG | 0.651618 | 5:+59989923 | MsG0580027408.01.T01:CDS |
| AAGTGGTTGTGATTTGTGAA+GGG | 0.653510 | 5:-59989229 | None:intergenic |
| GCGCAGCGTGTTCCCCACCG+TGG | 0.659108 | 5:-59989909 | None:intergenic |
| GATTCCGTTACGTTACCTAA+CGG | 0.659410 | 5:-59990019 | None:intergenic |
| TTTAGATTTCGATGATTACG+AGG | 0.676604 | 5:+59989709 | MsG0580027408.01.T01:CDS |
| GTGTTCGAAACTCAAAACGG+TGG | 0.697096 | 5:+59989584 | MsG0580027408.01.T01:CDS |
| TAACGTAACGGAATCTGACG+CGG | 0.701362 | 5:+59990027 | MsG0580027408.01.T01:CDS |
| TGTTCCGTTAGGTAACGTAA+CGG | 0.710318 | 5:+59990015 | MsG0580027408.01.T01:CDS |
| ACATGCGCCTTCAACTTCTG+CGG | 0.735945 | 5:+59989769 | MsG0580027408.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGTTTATGTTAGAGATGA+CGG | + | Chr5:59989953-59989972 | MsG0580027408.01.T01:CDS | 25.0% |
| !!! | AAAGATTTTTTTCGAGTTAC+AGG | + | Chr5:59989533-59989552 | MsG0580027408.01.T01:CDS | 25.0% |
| ATTGTTACGGATGAATCTTA+CGG | + | Chr5:59990079-59990098 | MsG0580027408.01.T01:CDS | 30.0% | |
| CTTAACAACGTTATCACTAT+TGG | - | Chr5:59989660-59989679 | None:intergenic | 30.0% | |
| GAAATTGAAAGCAATGGAAA+CGG | - | Chr5:59989273-59989292 | None:intergenic | 30.0% | |
| TGCTTTCAATTTCTGCAAAT+GGG | + | Chr5:59989280-59989299 | MsG0580027408.01.T01:CDS | 30.0% | |
| TTGCTTTCAATTTCTGCAAA+TGG | + | Chr5:59989279-59989298 | MsG0580027408.01.T01:CDS | 30.0% | |
| TTTAGATTTCGATGATTACG+AGG | + | Chr5:59989709-59989728 | MsG0580027408.01.T01:CDS | 30.0% | |
| TTTGCAGAAATTGAAAGCAA+TGG | - | Chr5:59989279-59989298 | None:intergenic | 30.0% | |
| TTTGTTTATCATGTCATACG+TGG | - | Chr5:59989747-59989766 | None:intergenic | 30.0% | |
| ! | TGATAACGTTGTTAAGCTTT+GGG | + | Chr5:59989664-59989683 | MsG0580027408.01.T01:CDS | 30.0% |
| AACGTGTTCGAAACTCAAAA+CGG | + | Chr5:59989581-59989600 | MsG0580027408.01.T01:CDS | 35.0% | |
| CTTGATGAAGATGACATAGA+TGG | - | Chr5:59989509-59989528 | None:intergenic | 35.0% | |
| GCTTTCAATTTCTGCAAATG+GGG | + | Chr5:59989281-59989300 | MsG0580027408.01.T01:CDS | 35.0% | |
| TGCTGATGCTGTTATTGTTA+CGG | + | Chr5:59990066-59990085 | MsG0580027408.01.T01:CDS | 35.0% | |
| TTGTTACGGATGAATCTTAC+GGG | + | Chr5:59990080-59990099 | MsG0580027408.01.T01:CDS | 35.0% | |
| ! | AAGTGGTTGTGATTTGTGAA+GGG | - | Chr5:59989232-59989251 | None:intergenic | 35.0% |
| ! | CGTTAGTTTATCTTCGTCAT+CGG | + | Chr5:59989466-59989485 | MsG0580027408.01.T01:CDS | 35.0% |
| ! | GACAGTATAGGATTTGGTTT+AGG | + | Chr5:59989686-59989705 | MsG0580027408.01.T01:CDS | 35.0% |
| ! | GTGATAACGTTGTTAAGCTT+TGG | + | Chr5:59989663-59989682 | MsG0580027408.01.T01:CDS | 35.0% |
| ! | GTTTTCGTTATCTTCGTCAT+CGG | - | Chr5:59989438-59989457 | None:intergenic | 35.0% |
| ! | TCGTTGAGTCTATCGATTAA+TGG | - | Chr5:59989167-59989186 | None:intergenic | 35.0% |
| ! | TGATTTGTGAAGGGAAAGAT+GGG | - | Chr5:59989223-59989242 | None:intergenic | 35.0% |
| !!! | AAGAAGCTTTTTTACGAAGG+TGG | - | Chr5:59989373-59989392 | None:intergenic | 35.0% |
| AATCTGACGCGGATAATACT+TGG | + | Chr5:59990038-59990057 | MsG0580027408.01.T01:CDS | 40.0% | |
| AGAAAAGTCAGTGTTCCGTT+AGG | + | Chr5:59990004-59990023 | MsG0580027408.01.T01:CDS | 40.0% | |
| ATCACAACCACTTCCTTCAA+TGG | + | Chr5:59989239-59989258 | MsG0580027408.01.T01:CDS | 40.0% | |
| CATAGACGACAACGTAGTAT+TGG | + | Chr5:59989608-59989627 | MsG0580027408.01.T01:CDS | 40.0% | |
| CGAGTTACAGGAAACAGTTA+TGG | + | Chr5:59989545-59989564 | MsG0580027408.01.T01:CDS | 40.0% | |
| GATTCCGTTACGTTACCTAA+CGG | - | Chr5:59990022-59990041 | None:intergenic | 40.0% | |
| GATTTCGATGATTACGAGGA+TGG | + | Chr5:59989713-59989732 | MsG0580027408.01.T01:CDS | 40.0% | |
| GCAATGAATTGAAACCTGCT+TGG | - | Chr5:59989193-59989212 | None:intergenic | 40.0% | |
| TAATCTCGCAGTCGAGATAT+GGG | + | Chr5:59989838-59989857 | MsG0580027408.01.T01:CDS | 40.0% | |
| TGAAAGCAATGGAAACGGAT+TGG | - | Chr5:59989268-59989287 | None:intergenic | 40.0% | |
| TGTTCCGTTAGGTAACGTAA+CGG | + | Chr5:59990015-59990034 | MsG0580027408.01.T01:CDS | 40.0% | |
| TTGGATTCCATTGAAGGAAG+TGG | - | Chr5:59989249-59989268 | None:intergenic | 40.0% | |
| ! | GAAGTGGTTGTGATTTGTGA+AGG | - | Chr5:59989233-59989252 | None:intergenic | 40.0% |
| ! | GTGATTTGTGAAGGGAAAGA+TGG | - | Chr5:59989224-59989243 | None:intergenic | 40.0% |
| !! | AACGGATTGGATTCCATTGA+AGG | - | Chr5:59989255-59989274 | None:intergenic | 40.0% |
| !! | CTTTGGGACAGTATAGGATT+TGG | + | Chr5:59989680-59989699 | MsG0580027408.01.T01:CDS | 40.0% |
| !! | GTTAAGCTTTGGGACAGTAT+AGG | + | Chr5:59989674-59989693 | MsG0580027408.01.T01:CDS | 40.0% |
| !!! | GGGAAGAAGCTTTTTTACGA+AGG | - | Chr5:59989376-59989395 | None:intergenic | 40.0% |
| ACGAAGGTGGACGATGAAAA+TGG | - | Chr5:59989360-59989379 | None:intergenic | 45.0% | |
| AGACTCAACGATTTCCAAGC+AGG | + | Chr5:59989176-59989195 | MsG0580027408.01.T01:CDS | 45.0% | |
| GAAATCATCGTCGTTGTCGA+AGG | - | Chr5:59989411-59989430 | None:intergenic | 45.0% | |
| GTAATCTCGCAGTCGAGATA+TGG | + | Chr5:59989837-59989856 | MsG0580027408.01.T01:CDS | 45.0% | |
| GTCGAAGGTGATTGATGGAA+GGG | - | Chr5:59989396-59989415 | None:intergenic | 45.0% | |
| GTGTTCGAAACTCAAAACGG+TGG | + | Chr5:59989584-59989603 | MsG0580027408.01.T01:CDS | 45.0% | |
| TCGTTGTCGAAGGTGATTGA+TGG | - | Chr5:59989401-59989420 | None:intergenic | 45.0% | |
| TGACGCGGATAATACTTGGT+GGG | + | Chr5:59990042-59990061 | MsG0580027408.01.T01:CDS | 45.0% | |
| TGTCGAAGGTGATTGATGGA+AGG | - | Chr5:59989397-59989416 | None:intergenic | 45.0% | |
| TTCGTTATCTTCGTCATCGG+AGG | - | Chr5:59989435-59989454 | None:intergenic | 45.0% | |
| ! | TAACGTAACGGAATCTGACG+CGG | + | Chr5:59990027-59990046 | MsG0580027408.01.T01:CDS | 45.0% |
| !! | GGTGACTTTGTTGATGATGC+TGG | - | Chr5:59989339-59989358 | None:intergenic | 45.0% |
| ACATGCGCCTTCAACTTCTG+CGG | + | Chr5:59989769-59989788 | MsG0580027408.01.T01:CDS | 50.0% | |
| CTGACGCGGATAATACTTGG+TGG | + | Chr5:59990041-59990060 | MsG0580027408.01.T01:CDS | 50.0% | |
| GGACGTCAACGTTTGACAGT+TGG | + | Chr5:59989974-59989993 | MsG0580027408.01.T01:CDS | 50.0% | |
| ! | GACGATCACATCTGGTGATG+CGG | - | Chr5:59989795-59989814 | None:intergenic | 50.0% |
| ! | GCAGAAGTTGAAGGCGCATG+TGG | - | Chr5:59989770-59989789 | None:intergenic | 55.0% |
| AACACGCTGCGCGTGGAATC+TGG | + | Chr5:59989920-59989939 | MsG0580027408.01.T01:CDS | 60.0% | |
| CCAGATGTGATCGTCTCCGC+AGG | + | Chr5:59989800-59989819 | MsG0580027408.01.T01:CDS | 60.0% | |
| CCTGCGGAGACGATCACATC+TGG | - | Chr5:59989803-59989822 | None:intergenic | 60.0% | |
| GATGCGGCCGCAGAAGTTGA+AGG | - | Chr5:59989779-59989798 | None:intergenic | 60.0% | |
| GTGATCGTCTCCGCAGGAGA+AGG | + | Chr5:59989806-59989825 | MsG0580027408.01.T01:CDS | 60.0% | |
| ACCACGTGCGCCTTCTCCTG+CGG | - | Chr5:59989819-59989838 | None:intergenic | 65.0% | |
| ACGCTGCGCGTGGAATCTGG+CGG | + | Chr5:59989923-59989942 | MsG0580027408.01.T01:CDS | 65.0% | |
| GGGACACTCGTCTCCGACGA+CGG | + | Chr5:59989858-59989877 | MsG0580027408.01.T01:CDS | 65.0% | |
| TCTCCGACGACGGAAGCCGT+CGG | + | Chr5:59989868-59989887 | MsG0580027408.01.T01:CDS | 65.0% | |
| AGCCGTCGGTCGTAGCCGAG+TGG | + | Chr5:59989882-59989901 | MsG0580027408.01.T01:CDS | 70.0% | |
| CCCCACTCGGCTACGACCGA+CGG | - | Chr5:59989887-59989906 | None:intergenic | 70.0% | |
| CCGTCGGTCGTAGCCGAGTG+GGG | + | Chr5:59989884-59989903 | MsG0580027408.01.T01:CDS | 70.0% | |
| CGACCGACGGCTTCCGTCGT+CGG | - | Chr5:59989874-59989893 | None:intergenic | 70.0% | |
| CGCAGCGTGTTCCCCACCGT+GGG | - | Chr5:59989911-59989930 | None:intergenic | 70.0% | |
| CGTCGGTCGTAGCCGAGTGG+GGG | + | Chr5:59989885-59989904 | MsG0580027408.01.T01:CDS | 70.0% | |
| GCCGTCGGTCGTAGCCGAGT+GGG | + | Chr5:59989883-59989902 | MsG0580027408.01.T01:CDS | 70.0% | |
| ! | TCCGCAGGAGAAGGCGCACG+TGG | + | Chr5:59989815-59989834 | MsG0580027408.01.T01:CDS | 70.0% |
| CGTAGCCGAGTGGGGGCCCA+CGG | + | Chr5:59989892-59989911 | MsG0580027408.01.T01:CDS | 75.0% | |
| GCGCAGCGTGTTCCCCACCG+TGG | - | Chr5:59989912-59989931 | None:intergenic | 75.0% | |
| GGTGGGGAACACGCTGCGCG+TGG | + | Chr5:59989913-59989932 | MsG0580027408.01.T01:CDS | 75.0% | |
| ! | AGCCGAGTGGGGGCCCACGG+TGG | + | Chr5:59989895-59989914 | MsG0580027408.01.T01:CDS | 80.0% |
| ! | CCCCACCGTGGGCCCCCACT+CGG | - | Chr5:59989900-59989919 | None:intergenic | 80.0% |
| ! | CCGAGTGGGGGCCCACGGTG+GGG | + | Chr5:59989897-59989916 | MsG0580027408.01.T01:CDS | 80.0% |
| ! | GCCGAGTGGGGGCCCACGGT+GGG | + | Chr5:59989896-59989915 | MsG0580027408.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 59989155 | 59990111 | 59989155 | ID=MsG0580027408.01;Name=MsG0580027408.01 |
| Chr5 | mRNA | 59989155 | 59990111 | 59989155 | ID=MsG0580027408.01.T01;Parent=MsG0580027408.01;Name=MsG0580027408.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|318 |
| Chr5 | exon | 59989155 | 59990111 | 59989155 | ID=MsG0580027408.01.T01:exon:22220;Parent=MsG0580027408.01.T01 |
| Chr5 | CDS | 59989155 | 59990111 | 59989155 | ID=MsG0580027408.01.T01:cds;Parent=MsG0580027408.01.T01 |
| Gene Sequence |
| Protein sequence |
