AlfalfaGEDB | MsG0280011288.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011288.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011288.01.T01	XP_003597726.1	81.707	164	29	1	1	163	475	638	3.28E-83	267

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011288.01.T01	Q9M817	50	110	53	2	2	110	476	584	4.73E-32	123

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011288.01.T01	A0A396JI28	81.707	164	29	1	1	163	538	701	2.74e-83	268

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048177.01	MsG0280011288.01	0.836221	1.062498e-56	1.330493e-53
MsG0180000019.01	MsG0280011288.01	0.841145	5.674429e-58	8.261729e-55
MsG0180000089.01	MsG0280011288.01	0.808045	3.756358e-50	2.125604e-47
MsG0180000222.01	MsG0280011288.01	0.816398	5.644285e-52	3.995119e-49
MsG0180001053.01	MsG0280011288.01	0.835636	1.495180e-56	1.839165e-53
MsG0180001294.01	MsG0280011288.01	0.816615	5.046390e-52	3.593165e-49
MsG0180001922.01	MsG0280011288.01	0.800726	1.258758e-48	5.904110e-46
MsG0180003190.01	MsG0280011288.01	0.812613	3.882497e-51	2.479957e-48
MsG0180003241.01	MsG0280011288.01	0.865180	7.120652e-65	2.295639e-61
MsG0180004110.01	MsG0280011288.01	0.802558	5.298782e-49	2.603455e-46
MsG0180004562.01	MsG0280011288.01	0.819253	1.279922e-52	9.798742e-50
MsG0180004752.01	MsG0280011288.01	0.826774	2.255714e-54	2.135756e-51
MsG0180004809.01	MsG0280011288.01	0.854573	1.124732e-61	2.523136e-58
MsG0180005125.01	MsG0280011288.01	0.847497	1.114100e-59	1.984030e-56
MsG0180005419.01	MsG0280011288.01	0.820547	6.475636e-53	5.139302e-50
MsG0180005813.01	MsG0280011288.01	0.804185	2.439204e-49	1.249470e-46
MsG0180005949.01	MsG0280011288.01	0.845899	3.044315e-59	5.150024e-56
MsG0180006012.01	MsG0280011288.01	0.827149	1.834816e-54	1.756417e-51
MsG0180006047.01	MsG0280011288.01	0.832326	1.007362e-55	1.122113e-52
MsG0180006226.01	MsG0280011288.01	-0.811662	6.257837e-51	3.896407e-48
MsG0280010735.01	MsG0280011288.01	0.832393	9.696324e-56	1.082369e-52
MsG0280011152.01	MsG0280011288.01	0.843317	1.509069e-58	2.352398e-55
MsG0280011288.01	MsG0280011473.01	0.854201	1.440851e-61	3.193553e-58
MsG0280011288.01	MsG0380011674.01	0.825351	4.914946e-54	4.468732e-51
MsG0280011288.01	MsG0380014163.01	0.816072	6.676835e-52	4.684116e-49
MsG0280011288.01	MsG0380014680.01	0.819856	9.323207e-53	7.258732e-50
MsG0280011288.01	MsG0380014913.01	0.822028	2.949147e-53	2.439585e-50
MsG0280011288.01	MsG0380015686.01	0.849144	3.903313e-60	7.331323e-57
MsG0280011288.01	MsG0380015986.01	0.801148	1.032490e-48	4.894935e-46
MsG0280011288.01	MsG0380016227.01	0.815493	8.989690e-52	6.207601e-49
MsG0280011288.01	MsG0380016273.01	0.812791	3.548239e-51	2.276953e-48
MsG0280011288.01	MsG0380017158.01	0.880125	7.102785e-70	3.955104e-66
MsG0280011288.01	MsG0380017228.01	0.803085	4.125260e-49	2.054205e-46
MsG0280011288.01	MsG0380017410.01	0.812874	3.403247e-51	2.188738e-48
MsG0280011288.01	MsG0380017643.01	0.801021	1.096076e-48	5.180007e-46
MsG0280011288.01	MsG0480018389.01	0.816180	6.314638e-52	4.443090e-49
MsG0280011288.01	MsG0480018460.01	0.809338	1.987875e-50	1.164050e-47
MsG0280011288.01	MsG0480018904.01	0.819026	1.441461e-52	1.096746e-49
MsG0280011288.01	MsG0480018998.01	0.806264	8.951738e-50	4.837403e-47
MsG0280011288.01	MsG0480019038.01	0.807559	4.763716e-50	2.661609e-47
MsG0280011288.01	MsG0480019170.01	0.816697	4.838605e-52	3.452821e-49
MsG0280011288.01	MsG0480019395.01	0.828097	1.086376e-54	1.069179e-51
MsG0280011288.01	MsG0480019880.01	0.810093	1.368229e-50	8.172961e-48
MsG0280011288.01	MsG0480020371.01	0.806866	6.679765e-50	3.665780e-47
MsG0280011288.01	MsG0480020445.01	0.820605	6.280815e-53	4.992342e-50
MsG0280011288.01	MsG0480021135.01	0.821157	4.686502e-53	3.783190e-50
MsG0280011288.01	MsG0480021298.01	0.837376	5.392360e-57	6.990501e-54
MsG0280011288.01	MsG0480022479.01	0.815272	1.006714e-51	6.909120e-49
MsG0280011288.01	MsG0480022486.01	0.803363	3.612211e-49	1.811635e-46
MsG0280011288.01	MsG0480022760.01	0.802334	5.893063e-49	2.879167e-46
MsG0280011288.01	MsG0480022797.01	0.812313	4.515224e-51	2.861238e-48
MsG0280011288.01	MsG0480023245.01	0.831669	1.464230e-55	1.599915e-52
MsG0280011288.01	MsG0480023280.01	0.802763	4.808752e-49	2.375199e-46
MsG0280011288.01	MsG0480023417.01	0.815502	8.944028e-52	6.177695e-49
MsG0280011288.01	MsG0480023490.01	0.823454	1.373364e-53	1.182992e-50
MsG0280011288.01	MsG0480023517.01	0.847711	9.725614e-60	1.743883e-56
MsG0280011288.01	MsG0580024154.01	0.852882	3.447483e-61	7.309790e-58
MsG0280011288.01	MsG0580024205.01	0.846980	1.544608e-59	2.705263e-56
MsG0280011288.01	MsG0580024871.01	0.814265	1.682556e-51	1.123695e-48
MsG0280011288.01	MsG0580025236.01	0.853599	2.148337e-61	4.667248e-58
MsG0280011288.01	MsG0580025414.01	0.801158	1.027282e-48	4.871608e-46
MsG0280011288.01	MsG0580027073.01	0.809399	1.928865e-50	1.131360e-47
MsG0280011288.01	MsG0580027129.01	0.813973	1.951951e-51	1.293289e-48
MsG0280011288.01	MsG0580027227.01	0.805819	1.110273e-49	5.931938e-47
MsG0280011288.01	MsG0580027408.01	0.826562	2.534110e-54	2.384879e-51
MsG0280011288.01	MsG0580028416.01	0.809145	2.186693e-50	1.273904e-47
MsG0280011288.01	MsG0580028605.01	0.822930	1.819621e-53	1.544517e-50
MsG0280011288.01	MsG0580029133.01	0.801571	8.454823e-49	4.051291e-46
MsG0280011288.01	MsG0580029412.01	0.832848	7.478334e-56	8.461350e-53
MsG0280011288.01	MsG0580029658.01	0.801242	9.874255e-49	4.692500e-46
MsG0280011288.01	MsG0580029798.01	0.814648	1.384579e-51	9.343238e-49
MsG0280011288.01	MsG0580029901.01	0.820931	5.285531e-53	4.240007e-50
MsG0280011288.01	MsG0580029906.01	0.847415	1.173029e-59	2.083423e-56
MsG0280011288.01	MsG0580029930.01	0.839045	2.003315e-57	2.733281e-54
MsG0280011288.01	MsG0680030436.01	0.826874	2.135246e-54	2.027590e-51
MsG0280011288.01	MsG0680030841.01	0.822579	2.196705e-53	1.846221e-50
MsG0280011288.01	MsG0680031695.01	0.827957	1.174291e-54	1.150980e-51
MsG0280011288.01	MsG0680033971.01	0.818156	2.270800e-52	1.686580e-49
MsG0280011288.01	MsG0680034672.01	0.810874	9.277442e-51	5.658089e-48
MsG0280011288.01	MsG0780036906.01	0.819960	8.828372e-53	6.893642e-50
MsG0280011288.01	MsG0780037094.01	0.802960	4.378725e-49	2.173578e-46
MsG0280011288.01	MsG0780037258.01	0.812463	4.186185e-51	2.663615e-48
MsG0280011288.01	MsG0780037415.01	0.831069	2.056945e-55	2.207860e-52
MsG0280011288.01	MsG0780037599.01	0.829569	4.784997e-55	4.915786e-52
MsG0280011288.01	MsG0780038123.01	0.807418	5.104685e-50	2.841787e-47
MsG0280011288.01	MsG0780038135.01	0.815309	9.877966e-52	6.786174e-49
MsG0280011288.01	MsG0780038444.01	0.827671	1.375175e-54	1.336584e-51
MsG0280011288.01	MsG0780039247.01	0.801634	8.208050e-49	3.939267e-46
MsG0280011288.01	MsG0780039248.01	0.854019	1.626080e-61	3.582204e-58
MsG0280011288.01	MsG0780039877.01	0.810673	1.025516e-50	6.220723e-48
MsG0280011288.01	MsG0780039950.01	0.807562	4.758372e-50	2.658779e-47
MsG0280011288.01	MsG0780040144.01	0.805801	1.120227e-49	5.982246e-47
MsG0280011288.01	MsG0780040505.01	0.850743	1.393812e-60	2.757598e-57
MsG0280011288.01	MsG0780040516.01	0.819910	9.063410e-53	7.067284e-50
MsG0280011288.01	MsG0780040679.01	0.827399	1.598372e-54	1.541515e-51
MsG0280011288.01	MsG0780040741.01	0.847690	9.859171e-60	1.766694e-56
MsG0280011288.01	MsG0780041310.01	0.850387	1.755097e-60	3.432268e-57
MsG0280011288.01	MsG0780041370.01	0.802854	4.604122e-49	2.279390e-46
MsG0280011288.01	MsG0780041469.01	0.822301	2.549310e-53	2.125494e-50
MsG0280011288.01	MsG0880041985.01	0.829633	4.614459e-55	4.749810e-52
MsG0280011288.01	MsG0880042329.01	0.812322	4.495199e-51	2.849255e-48
MsG0280011288.01	MsG0880042811.01	0.834088	3.668839e-56	4.308239e-53
MsG0280011288.01	MsG0880042843.01	0.852772	3.706969e-61	7.830287e-58
MsG0280011288.01	MsG0880042967.01	0.848144	7.389168e-60	1.342990e-56
MsG0280011288.01	MsG0880043001.01	0.836346	9.874100e-57	1.241065e-53
MsG0280011288.01	MsG0880043285.01	0.826604	2.475999e-54	2.332951e-51
MsG0280011288.01	MsG0880043286.01	0.840312	9.378841e-58	1.330650e-54
MsG0280011288.01	MsG0880043715.01	0.811709	6.113065e-51	3.811062e-48
MsG0280011288.01	MsG0880044305.01	0.804229	2.388062e-49	1.224641e-46
MsG0280011288.01	MsG0880044546.01	0.804433	2.165457e-49	1.116352e-46
MsG0280011288.01	MsG0880044792.01	0.845768	3.304237e-59	5.566349e-56
MsG0280011288.01	MsG0880045099.01	0.822002	2.990170e-53	2.471768e-50
MsG0280011288.01	MsG0880045106.01	0.819733	9.945248e-53	7.716556e-50
MsG0280011288.01	MsG0880045275.01	0.854833	9.458518e-62	2.140255e-58
MsG0280011288.01	MsG0880045277.01	0.825381	4.834495e-54	4.399342e-51
MsG0280011288.01	MsG0880045914.01	0.825616	4.253085e-54	3.896407e-51
MsG0280011288.01	MsG0880046113.01	0.829551	4.830895e-55	4.960451e-52
MsG0280011288.01	MsG0880046226.01	0.803402	3.546040e-49	1.780363e-46
MsG0280011288.01	MsG0880046317.01	0.813529	2.444231e-51	1.600209e-48
MsG0280011288.01	MsG0880046329.01	0.840294	9.481876e-58	1.344569e-54
MsG0280011288.01	MsG0880046467.01	0.824838	6.497073e-54	5.821799e-51
MsG0280011288.01	MsG0880046586.01	0.857277	1.821187e-62	4.470167e-59
MsG0280011288.01	MsG0880046642.01	0.858677	6.992685e-63	1.799027e-59
MsG0280011288.01	MsG0880046888.01	0.828213	1.018926e-54	1.006160e-51
MsG0280011288.01	MsG0880047016.01	0.805130	1.548859e-49	8.129820e-47
MsG0280011288.01	MsG0880047081.01	0.815837	7.535000e-52	5.251816e-49
MsG0280011288.01	MsG0880047353.01	0.806991	6.285158e-50	3.460252e-47
MsG0280011288.01	MsG0880047491.01	0.806311	8.747785e-50	4.732701e-47
MsG0280011288.01	MsG0880047531.01	0.834048	3.754459e-56	4.403569e-53
MsG0280011288.01	MsG0880047590.01	0.841808	3.795900e-58	5.641783e-55
MsG0280006586.01	MsG0280011288.01	0.812392	4.339756e-51	2.755980e-48
MsG0280006728.01	MsG0280011288.01	0.802158	6.406359e-49	3.115856e-46
MsG0280007191.01	MsG0280011288.01	0.822831	1.919672e-53	1.624903e-50
MsG0280007272.01	MsG0280011288.01	0.839682	1.369000e-57	1.904703e-54
MsG0280007391.01	MsG0280011288.01	0.800532	1.378739e-48	6.435091e-46
MsG0280007549.01	MsG0280011288.01	0.810045	1.400715e-50	8.357264e-48
MsG0280008286.01	MsG0280011288.01	0.812387	4.350541e-51	2.762391e-48
MsG0280009838.01	MsG0280011288.01	0.847788	9.264511e-60	1.665072e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011288.01.T01	MTR_2g101610	81.707	164	29	1	1	163	475	638	3.97e-87	267
MsG0280011288.01.T01	MTR_2g101590	81.707	164	29	1	1	163	474	637	4.51e-87	267
MsG0280011288.01.T01	MTR_2g101560	78.395	162	33	2	2	161	476	637	7.88e-79	246
MsG0280011288.01.T01	MTR_2g101640	66.258	163	49	2	2	163	472	629	6.38e-69	220
MsG0280011288.01.T01	MTR_0236s0050	67.708	96	30	1	5	99	406	501	1.84e-41	145
MsG0280011288.01.T01	MTR_1g057460	64.286	98	34	1	3	99	404	501	8.19e-41	143
MsG0280011288.01.T01	MTR_4g011280	60.577	104	40	1	2	104	479	582	1.79e-40	143
MsG0280011288.01.T01	MTR_1g057460	64.286	98	34	1	3	99	475	572	3.23e-40	142
MsG0280011288.01.T01	MTR_2g101650	48.305	118	56	2	2	114	473	590	2.55e-35	129
MsG0280011288.01.T01	MTR_8g103233	43.750	112	61	2	2	112	463	573	5.67e-27	105
MsG0280011288.01.T01	MTR_1g026740	49.462	93	46	1	2	93	463	555	4.42e-25	100
MsG0280011288.01.T01	MTR_1g026750	50.538	93	45	1	2	93	464	556	2.12e-23	95.9
MsG0280011288.01.T01	MTR_1g026770	50.538	93	45	1	2	93	460	552	1.72e-22	93.2
MsG0280011288.01.T01	MTR_1g009200	43.299	97	54	1	2	97	474	570	1.12e-20	88.2
MsG0280011288.01.T01	MTR_6g008690	36.559	93	57	2	1	91	442	534	2.07e-17	78.6
MsG0280011288.01.T01	MTR_4g015080	35.870	92	58	1	1	91	477	568	7.59e-17	77.0
MsG0280011288.01.T01	MTR_3g462710	34.783	92	59	1	1	91	360	451	4.30e-16	74.7
MsG0280011288.01.T01	MTR_3g462710	34.694	98	61	2	1	95	469	566	4.72e-16	74.7
MsG0280011288.01.T01	MTR_4g107510	36.264	91	57	1	2	91	491	581	6.01e-16	74.7
MsG0280011288.01.T01	MTR_5g055000	31.034	116	76	3	2	115	466	579	5.37e-15	71.6
MsG0280011288.01.T01	MTR_4g033325	34.043	94	59	2	1	91	455	548	5.74e-15	71.6
MsG0280011288.01.T01	MTR_7g067010	36.047	86	54	1	1	85	467	552	6.85e-15	71.6
MsG0280011288.01.T01	MTR_4g033315	32.979	94	60	2	1	91	457	550	1.07e-14	70.9
MsG0280011288.01.T01	MTR_4g033310	32.979	94	60	2	1	91	457	550	1.07e-14	70.9
MsG0280011288.01.T01	MTR_4g033310	32.979	94	60	2	1	91	393	486	1.50e-14	70.5
MsG0280011288.01.T01	MTR_3g069500	32.432	111	70	4	2	110	468	575	2.55e-14	69.7
MsG0280011288.01.T01	MTR_4g033325	34.043	94	59	2	1	91	357	450	3.22e-14	69.3
MsG0280011288.01.T01	MTR_4g033325	34.043	94	59	2	1	91	331	424	3.58e-14	69.3
MsG0280011288.01.T01	MTR_0294s0020	30.851	94	62	2	1	91	455	548	5.72e-14	68.9
MsG0280011288.01.T01	MTR_4g107580	29.921	127	81	2	2	127	480	599	8.70e-14	68.2
MsG0280011288.01.T01	MTR_8g469470	32.609	92	61	1	1	91	487	578	1.25e-13	67.8
MsG0280011288.01.T01	MTR_3g069440	32.692	104	66	3	2	104	476	576	1.32e-13	67.8
MsG0280011288.01.T01	MTR_7g088790	36.607	112	63	5	1	110	479	584	1.37e-13	67.8
MsG0280011288.01.T01	MTR_4g033330	35.065	77	49	1	1	76	457	533	1.49e-13	67.8
MsG0280011288.01.T01	MTR_5g038060	33.628	113	71	3	2	110	484	596	1.61e-13	67.4
MsG0280011288.01.T01	MTR_8g038880	36.471	85	52	2	2	85	458	541	1.88e-13	67.4
MsG0280011288.01.T01	MTR_7g098160	32.000	125	82	2	2	123	478	602	3.19e-13	66.6
MsG0280011288.01.T01	MTR_1g041815	29.839	124	81	3	2	121	471	592	5.13e-13	66.2
MsG0280011288.01.T01	MTR_7g098040	28.906	128	87	2	2	125	479	606	5.81e-13	65.9
MsG0280011288.01.T01	MTR_3g069420	30.702	114	74	4	2	113	477	587	5.87e-13	65.9
MsG0280011288.01.T01	MTR_7g098090	30.400	125	84	2	2	123	483	607	7.88e-13	65.5
MsG0280011288.01.T01	MTR_3g005010	30.435	92	63	1	1	91	449	540	1.61e-12	64.7
MsG0280011288.01.T01	MTR_7g098200	30.469	128	85	3	2	125	464	591	1.93e-12	64.3
MsG0280011288.01.T01	MTR_7g098200	30.469	128	85	3	2	125	474	601	1.94e-12	64.3
MsG0280011288.01.T01	MTR_7g088825	27.481	131	85	6	1	125	472	598	2.87e-12	63.9
MsG0280011288.01.T01	MTR_3g072300	32.609	92	61	1	1	91	467	558	4.49e-12	63.5
MsG0280011288.01.T01	MTR_4g033390	32.941	85	54	2	10	91	30	114	5.38e-12	60.1
MsG0280011288.01.T01	MTR_4g033385	29.787	94	63	2	1	91	358	451	5.75e-12	63.2
MsG0280011288.01.T01	MTR_1g042310	32.143	84	56	1	9	91	434	517	6.55e-12	62.8
MsG0280011288.01.T01	MTR_1g042310	32.143	84	56	1	9	91	441	524	6.57e-12	62.8
MsG0280011288.01.T01	MTR_1g042310	32.143	84	56	1	9	91	478	561	7.62e-12	62.8
MsG0280011288.01.T01	MTR_7g098230	29.752	121	82	2	2	119	471	591	8.55e-12	62.4
MsG0280011288.01.T01	MTR_8g469480	31.250	112	72	2	2	108	491	602	8.82e-12	62.4
MsG0280011288.01.T01	MTR_1g075440	30.088	113	75	2	2	110	473	585	9.32e-12	62.4
MsG0280011288.01.T01	MTR_7g098200	30.400	125	83	3	5	125	363	487	1.11e-11	62.0
MsG0280011288.01.T01	MTR_7g098180	29.323	133	75	3	2	127	477	597	1.22e-11	62.0
MsG0280011288.01.T01	MTR_5g014150	28.440	109	76	2	1	107	494	602	2.07e-11	61.6
MsG0280011288.01.T01	MTR_4g024930	28.571	91	64	1	2	91	462	552	2.78e-11	61.2
MsG0280011288.01.T01	MTR_4g019580	29.213	89	61	2	4	91	479	566	3.81e-11	60.8
MsG0280011288.01.T01	MTR_5g085850	31.200	125	79	3	2	125	467	585	4.07e-11	60.5
MsG0280011288.01.T01	MTR_5g012270	30.769	91	60	2	2	91	481	569	5.58e-11	60.1
MsG0280011288.01.T01	MTR_7g005930	29.565	115	72	4	1	111	475	584	5.80e-11	60.1
MsG0280011288.01.T01	MTR_4g098800	29.213	89	62	1	1	88	481	569	6.46e-11	60.1
MsG0280011288.01.T01	MTR_4g098800	29.213	89	62	1	1	88	546	634	7.25e-11	60.1
MsG0280011288.01.T01	MTR_4g107530	30.769	91	62	1	2	91	488	578	7.78e-11	59.7
MsG0280011288.01.T01	MTR_4g114340	28.182	110	78	1	2	110	466	575	7.93e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011288.01.T01	AT1G52190	50.000	110	53	2	2	110	476	584	4.82e-33	123
MsG0280011288.01.T01	AT3G16180	46.903	113	57	3	5	116	479	589	9.10e-32	119
MsG0280011288.01.T01	AT2G02040	38.043	92	56	1	1	91	487	578	9.09e-19	82.8
MsG0280011288.01.T01	AT5G62680	36.283	113	68	3	2	110	499	611	1.71e-17	79.0
MsG0280011288.01.T01	AT5G11570	39.130	92	51	2	2	92	390	477	1.70e-16	76.3
MsG0280011288.01.T01	AT5G14940	39.773	88	51	2	1	86	446	533	6.24e-16	74.7
MsG0280011288.01.T01	AT1G62200	38.202	89	53	2	1	87	522	610	9.68e-16	73.9
MsG0280011288.01.T01	AT1G62200	38.202	89	53	2	1	87	493	581	9.87e-16	73.9
MsG0280011288.01.T01	AT5G01180	35.165	91	57	2	1	89	469	559	1.07e-15	73.9
MsG0280011288.01.T01	AT5G01180	35.165	91	57	2	1	89	469	559	1.07e-15	73.9
MsG0280011288.01.T01	AT5G01180	35.165	91	57	2	1	89	469	559	1.07e-15	73.9
MsG0280011288.01.T01	AT1G62200	38.202	89	53	2	1	87	536	624	1.10e-15	73.9
MsG0280011288.01.T01	AT3G54450	31.776	107	69	3	1	104	449	554	2.62e-15	72.8
MsG0280011288.01.T01	AT1G22540	33.696	92	60	1	1	91	458	549	3.25e-15	72.4
MsG0280011288.01.T01	AT3G54140	34.783	92	59	1	1	91	469	560	4.70e-15	72.0
MsG0280011288.01.T01	AT3G54140	34.783	92	59	1	1	91	469	560	4.70e-15	72.0
MsG0280011288.01.T01	AT1G18880	31.034	116	74	2	5	119	476	586	1.38e-14	70.9
MsG0280011288.01.T01	AT1G72140	32.979	94	60	2	1	91	458	551	1.87e-14	70.1
MsG0280011288.01.T01	AT1G68570	31.532	111	74	2	2	110	444	554	2.23e-14	70.1
MsG0280011288.01.T01	AT1G68570	31.532	111	74	2	2	110	474	584	2.26e-14	70.1
MsG0280011288.01.T01	AT2G26690	32.075	106	70	2	2	106	420	524	3.39e-14	69.7
MsG0280011288.01.T01	AT2G26690	32.075	106	70	2	2	106	432	536	3.41e-14	69.7
MsG0280011288.01.T01	AT2G26690	32.075	106	70	2	2	106	465	569	3.45e-14	69.7
MsG0280011288.01.T01	AT3G47960	31.868	91	61	1	2	91	515	605	6.03e-14	68.9
MsG0280011288.01.T01	AT4G21680	31.000	100	68	1	1	99	479	578	1.01e-13	68.2
MsG0280011288.01.T01	AT3G01350	33.333	87	56	2	1	85	456	542	4.35e-13	66.2
MsG0280011288.01.T01	AT1G32450	27.350	117	74	3	1	109	490	603	1.13e-12	65.1
MsG0280011288.01.T01	AT1G72130	29.348	92	64	1	1	91	439	530	2.72e-12	63.9
MsG0280011288.01.T01	AT5G19640	31.452	124	76	4	1	118	489	609	2.90e-12	63.9
MsG0280011288.01.T01	AT1G72130	30.233	86	59	1	1	85	321	406	1.41e-11	62.0
MsG0280011288.01.T01	AT1G72130	30.233	86	59	1	1	85	321	406	1.41e-11	62.0
MsG0280011288.01.T01	AT1G69870	26.050	119	86	2	2	118	501	619	3.92e-11	60.8
MsG0280011288.01.T01	AT1G22550	26.087	92	67	1	1	91	465	556	7.88e-11	59.7

Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTAGTGTGTGCTTCCCTTTC+TGG	0.005670	2:+82026823	MsG0280011288.01.T01:CDS
CTTTGTAATAAAACTCATTT+TGG	0.123205	2:-82026782	None:intergenic
GCTGAAATGTTCAATGTTAT+TGG	0.153417	2:+82026759	None:intergenic
GTCATTTCGACAAGTATTAT+TGG	0.245462	2:+82026955	MsG0280011288.01.T01:CDS
CAAAGAGTTTCCAAAGAGTA+TGG	0.305218	2:+82026800	MsG0280011288.01.T01:CDS
TTAGTATGCAGTTGGGCTTA+TGG	0.310648	2:+82027017	MsG0280011288.01.T01:CDS
TGGGAATGGGTGTGGGAACT+TGG	0.335719	2:+82026848	MsG0280011288.01.T01:CDS
TGTGCTTCCCTTTCTGGATT+GGG	0.336081	2:+82026829	MsG0280011288.01.T01:CDS
TCCCTTTCTGGATTGGGAAT+GGG	0.346075	2:+82026835	MsG0280011288.01.T01:CDS
TTCTGGATTGGGAATGGGTG+TGG	0.356070	2:+82026840	MsG0280011288.01.T01:CDS
TTCCCTTTCTGGATTGGGAA+TGG	0.360202	2:+82026834	MsG0280011288.01.T01:CDS
TCATTTCGACAAGTATTATT+GGG	0.368455	2:+82026956	MsG0280011288.01.T01:CDS
CTAACCTTGTCATCAATTTG+TGG	0.379224	2:-82027122	None:intergenic
CACACACTAGCCATACTCTT+TGG	0.386562	2:-82026810	None:intergenic
TCCAATGTGAGTGAAGAAAA+TGG	0.388185	2:+82027059	MsG0280011288.01.T01:CDS
GTGTGCTTCCCTTTCTGGAT+TGG	0.412665	2:+82026828	MsG0280011288.01.T01:CDS
TAGTGAAGAAAGTGACTTGA+AGG	0.415566	2:+82027220	MsG0280011288.01.T01:CDS
TTCAGTTGAATGTTCCTCCT+TGG	0.424820	2:-82027084	None:intergenic
TCTTGAATGCTTTCTCAACC+TGG	0.450725	2:-82027196	None:intergenic
TGTATTATTTAGTATGCAGT+TGG	0.452225	2:+82027009	MsG0280011288.01.T01:CDS
TCTGGATTGGGAATGGGTGT+GGG	0.460518	2:+82026841	MsG0280011288.01.T01:CDS
GGTTTCTGATAATATTATCA+AGG	0.466034	2:+82026932	MsG0280011288.01.T01:CDS
AAGTATTATTGGGTTATAGC+TGG	0.466660	2:+82026966	MsG0280011288.01.T01:CDS
AGTTAACTGAATTCAAGAAT+GGG	0.482214	2:+82027171	MsG0280011288.01.T01:CDS
TATAATGCTCAATACTAAAG+AGG	0.493221	2:-82026874	None:intergenic
GAGTTAACTGAATTCAAGAA+TGG	0.495721	2:+82027170	MsG0280011288.01.T01:CDS
GTATTATTTAGTATGCAGTT+GGG	0.508088	2:+82027010	MsG0280011288.01.T01:CDS
CACCCATTCCCAATCCAGAA+AGG	0.526547	2:-82026837	None:intergenic
CAAGTGAAGGAAAGGAAGGA+TGG	0.528298	2:+82026910	MsG0280011288.01.T01:CDS
ACCCATTCCCAATCCAGAAA+GGG	0.532709	2:-82026836	None:intergenic
TACTACTTCAAGTGAAGGAA+AGG	0.538500	2:+82026902	MsG0280011288.01.T01:CDS
TAGTGATGAAACTTGTTCAA+AGG	0.554939	2:+82027142	MsG0280011288.01.T01:CDS
TGAAGAAAGTGACTTGAAGG+AGG	0.557542	2:+82027223	MsG0280011288.01.T01:CDS
GAAAATACTACTTCAAGTGA+AGG	0.575290	2:+82026897	MsG0280011288.01.T01:CDS
ACTTCAAGTGAAGGAAAGGA+AGG	0.577450	2:+82026906	MsG0280011288.01.T01:CDS
GTTTCTGATAATATTATCAA+GGG	0.579970	2:+82026933	MsG0280011288.01.T01:CDS
AAGTGAAGGAAAGGAAGGAT+GGG	0.607366	2:+82026911	MsG0280011288.01.T01:CDS
GTTAACTGAATTCAAGAATG+GGG	0.610141	2:+82027172	MsG0280011288.01.T01:CDS
GAGTGAAGAAAATGGTTCCA+AGG	0.614654	2:+82027067	MsG0280011288.01.T01:CDS
TTGGATACTTCATCAACTGT+AGG	0.630013	2:-82027041	None:intergenic
AAATCCACAAATTGATGACA+AGG	0.634426	2:+82027118	MsG0280011288.01.T01:CDS
TTAACTGAATTCAAGAATGG+GGG	0.686853	2:+82027173	MsG0280011288.01.T01:CDS
TGAAGAAAATGGTTCCAAGG+AGG	0.722573	2:+82027070	MsG0280011288.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTTTCTGATAATATTATCAA+GGG	+	Chr2:82026933-82026952	MsG0280011288.01.T01:CDS	20.0%
!!!	CTTTGTAATAAAACTCATTT+TGG	-	Chr2:82026785-82026804	None:intergenic	20.0%
!	AGTTAACTGAATTCAAGAAT+GGG	+	Chr2:82027171-82027190	MsG0280011288.01.T01:CDS	25.0%
!	GGTTTCTGATAATATTATCA+AGG	+	Chr2:82026932-82026951	MsG0280011288.01.T01:CDS	25.0%
!	GTATTATTTAGTATGCAGTT+GGG	+	Chr2:82027010-82027029	MsG0280011288.01.T01:CDS	25.0%
!	TATAATGCTCAATACTAAAG+AGG	-	Chr2:82026877-82026896	None:intergenic	25.0%
!	TCATTTCGACAAGTATTATT+GGG	+	Chr2:82026956-82026975	MsG0280011288.01.T01:CDS	25.0%
!	TGTATTATTTAGTATGCAGT+TGG	+	Chr2:82027009-82027028	MsG0280011288.01.T01:CDS	25.0%
	AAGTATTATTGGGTTATAGC+TGG	+	Chr2:82026966-82026985	MsG0280011288.01.T01:CDS	30.0%
	GAAAATACTACTTCAAGTGA+AGG	+	Chr2:82026897-82026916	MsG0280011288.01.T01:CDS	30.0%
	GAGTTAACTGAATTCAAGAA+TGG	+	Chr2:82027170-82027189	MsG0280011288.01.T01:CDS	30.0%
	GTCATTTCGACAAGTATTAT+TGG	+	Chr2:82026955-82026974	MsG0280011288.01.T01:CDS	30.0%
	GTTAACTGAATTCAAGAATG+GGG	+	Chr2:82027172-82027191	MsG0280011288.01.T01:CDS	30.0%
	TTAACTGAATTCAAGAATGG+GGG	+	Chr2:82027173-82027192	MsG0280011288.01.T01:CDS	30.0%
!	AAATCCACAAATTGATGACA+AGG	+	Chr2:82027118-82027137	MsG0280011288.01.T01:CDS	30.0%
!	TAGTGATGAAACTTGTTCAA+AGG	+	Chr2:82027142-82027161	MsG0280011288.01.T01:CDS	30.0%
	CAAAGAGTTTCCAAAGAGTA+TGG	+	Chr2:82026800-82026819	MsG0280011288.01.T01:CDS	35.0%
	CTAACCTTGTCATCAATTTG+TGG	-	Chr2:82027125-82027144	None:intergenic	35.0%
	TACTACTTCAAGTGAAGGAA+AGG	+	Chr2:82026902-82026921	MsG0280011288.01.T01:CDS	35.0%
	TAGTGAAGAAAGTGACTTGA+AGG	+	Chr2:82027220-82027239	MsG0280011288.01.T01:CDS	35.0%
	TCCAATGTGAGTGAAGAAAA+TGG	+	Chr2:82027059-82027078	MsG0280011288.01.T01:CDS	35.0%
	TTGGATACTTCATCAACTGT+AGG	-	Chr2:82027044-82027063	None:intergenic	35.0%
!	ACCATTTTCTTCACTCACAT+TGG	-	Chr2:82027063-82027082	None:intergenic	35.0%
	AAGTGAAGGAAAGGAAGGAT+GGG	+	Chr2:82026911-82026930	MsG0280011288.01.T01:CDS	40.0%
	ACTTCAAGTGAAGGAAAGGA+AGG	+	Chr2:82026906-82026925	MsG0280011288.01.T01:CDS	40.0%
	GAGTGAAGAAAATGGTTCCA+AGG	+	Chr2:82027067-82027086	MsG0280011288.01.T01:CDS	40.0%
	TCTTGAATGCTTTCTCAACC+TGG	-	Chr2:82027199-82027218	None:intergenic	40.0%
	TGAAGAAAATGGTTCCAAGG+AGG	+	Chr2:82027070-82027089	MsG0280011288.01.T01:CDS	40.0%
	TGAAGAAAGTGACTTGAAGG+AGG	+	Chr2:82027223-82027242	MsG0280011288.01.T01:CDS	40.0%
	TTAGTATGCAGTTGGGCTTA+TGG	+	Chr2:82027017-82027036	MsG0280011288.01.T01:CDS	40.0%
	TTCAGTTGAATGTTCCTCCT+TGG	-	Chr2:82027087-82027106	None:intergenic	40.0%
	ACCCATTCCCAATCCAGAAA+GGG	-	Chr2:82026839-82026858	None:intergenic	45.0%
	CAAGTGAAGGAAAGGAAGGA+TGG	+	Chr2:82026910-82026929	MsG0280011288.01.T01:CDS	45.0%
	CACACACTAGCCATACTCTT+TGG	-	Chr2:82026813-82026832	None:intergenic	45.0%
	TGTGCTTCCCTTTCTGGATT+GGG	+	Chr2:82026829-82026848	MsG0280011288.01.T01:CDS	45.0%
!	TCCCTTTCTGGATTGGGAAT+GGG	+	Chr2:82026835-82026854	MsG0280011288.01.T01:CDS	45.0%
!	TTCCCTTTCTGGATTGGGAA+TGG	+	Chr2:82026834-82026853	MsG0280011288.01.T01:CDS	45.0%
	CACCCATTCCCAATCCAGAA+AGG	-	Chr2:82026840-82026859	None:intergenic	50.0%
	CTAGTGTGTGCTTCCCTTTC+TGG	+	Chr2:82026823-82026842	MsG0280011288.01.T01:CDS	50.0%
	GTGTGCTTCCCTTTCTGGAT+TGG	+	Chr2:82026828-82026847	MsG0280011288.01.T01:CDS	50.0%
	TGAATTCAAGAATGGGGGCC+AGG	+	Chr2:82027178-82027197	MsG0280011288.01.T01:CDS	50.0%
!	TCTGGATTGGGAATGGGTGT+GGG	+	Chr2:82026841-82026860	MsG0280011288.01.T01:CDS	50.0%
!	TTCTGGATTGGGAATGGGTG+TGG	+	Chr2:82026840-82026859	MsG0280011288.01.T01:CDS	50.0%
	TGGGAATGGGTGTGGGAACT+TGG	+	Chr2:82026848-82026867	MsG0280011288.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	82026765	82027256	82026765	ID=MsG0280011288.01;Name=MsG0280011288.01
Chr2	mRNA	82026765	82027256	82026765	ID=MsG0280011288.01.T01;Parent=MsG0280011288.01;Name=MsG0280011288.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|163
Chr2	exon	82026765	82027256	82026765	ID=MsG0280011288.01.T01:exon:12197;Parent=MsG0280011288.01.T01
Chr2	CDS	82026765	82027256	82026765	ID=MsG0280011288.01.T01:cds;Parent=MsG0280011288.01.T01

Gene Sequence

>MsG0280011288.01.T01

ATGTTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGAGTATGGCTAGTGTGTGCTTCCCTTTCTGGATTGGGAATGGGTGTGGGAACTTGGTATCCTCTTTAGTATTGAGCATTATAGAAAATACTACTTCAAGTGAAGGAAAGGAAGGATGGGTTTCTGATAATATTATCAAGGGTCATTTCGACAAGTATTATTGGGTTATAGCTGGAATTAATGCTCTAAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGTTGATGAAGTATCCAATGTGAGTGAAGAAAATGGTTCCAAGGAGGAACATTCAACTGAATTCAAGCAAGTAAATCCACAAATTGATGACAAGGTTAGTGATGAAACTTGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGGGGCCAGGTTGAGAAAGCATTCAAGAATAGTGAAGAAAGTGACTTGAAGGAGGAAGATTTGTGA

Protein sequence

>MsG0280011288.01.T01

MFNVIGQNEFYYKEFPKSMASVCFPFWIGNGCGNLVSSLVLSIIENTTSSEGKEGWVSDNIIKGHFDKYYWVIAGINALNLLYYLVCSWAYGPTVDEVSNVSEENGSKEEHSTEFKQVNPQIDDKVSDETCSKEKELTEFKNGGQVEKAFKNSEESDLKEEDL*