AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033099.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033099.01.T01 MTR_0025s0060 97.003 367 11 0 32 398 969 1335 0.0 723
MsG0680033099.01.T01 MTR_0025s0060 94.005 367 11 1 32 398 969 1324 0.0 691
MsG0680033099.01.T01 MTR_1g101030 73.297 367 92 2 32 398 1009 1369 6.29e-171 513
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033099.01.T01 AT4G20850 61.264 364 122 2 35 398 1036 1380 6.37e-139 429

Find 94 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATAAATGTTTAAATTAA+TGG 0.108900 6:-56683538 None:intergenic
AGTAAAAGCTCTAACCTTTA+AGG 0.136973 6:-56688659 None:intergenic
AGACAGACACTGACCTTATT+TGG 0.162336 6:-56684012 None:intergenic
GCAAGCAATGAAGTGTATTT+TGG 0.165230 6:-56685886 None:intergenic
TTCATTGCTTGCGAAGATTT+TGG 0.203798 6:+56685897 MsG0680033099.01.T01:CDS
CTGCCAGCGCGAGCCCCTTT+TGG 0.236238 6:-56688627 None:intergenic
AATCAATAATGAGGACTTAA+AGG 0.259787 6:-56683643 None:intergenic
GGCAGAGATTGAATCCTTAA+AGG 0.284906 6:+56688645 MsG0680033099.01.T01:CDS
CTGCCTATTGGAATAAAGTT+TGG 0.314552 6:+56690667 MsG0680033099.01.T01:three_prime_UTR
GGTACAGTGCCTCTGCTAAC+TGG 0.321623 6:-56688606 None:intergenic
GTGTATATTGTCAAAGGATT+TGG 0.324329 6:+56689436 MsG0680033099.01.T01:CDS
TAGCTCATAGAGTTTCTTCT+TGG 0.331975 6:-56690538 None:intergenic
TTATGTAGTTCCTCCAAATA+AGG 0.338062 6:+56683999 MsG0680033099.01.T01:CDS
TCTAGAGTATTGCTGCCTAT+TGG 0.348271 6:+56690655 MsG0680033099.01.T01:exon
AAGTCCTCATTATTGATTCC+AGG 0.355431 6:+56683648 MsG0680033099.01.T01:CDS
ACCTCTGCATCGTCGTCTTC+TGG 0.362448 6:-56686739 None:intergenic
CTCTCATTACTTGATGAGAT+TGG 0.362502 6:+56690564 MsG0680033099.01.T01:CDS
TAATCTCACTGCAGAATAAC+AGG 0.371747 6:+56688560 MsG0680033099.01.T01:intron
AGCAAGGATCTGTATTGGTT+GGG 0.383823 6:+56683893 MsG0680033099.01.T01:CDS
GATGTAGCAATGTTGGAATA+TGG 0.389107 6:+56690689 MsG0680033099.01.T01:three_prime_UTR
TTGGTTGGGGCAATTTCATA+TGG 0.392760 6:+56683907 MsG0680033099.01.T01:CDS
ATTAATGGATGAATTCAAAC+TGG 0.399773 6:-56683523 None:intergenic
CATCCAAACTTTATTCCAAT+AGG 0.404162 6:-56690670 None:intergenic
GATGTAAAGTCATCTAAATA+TGG 0.404685 6:+56689557 MsG0680033099.01.T01:CDS
TCATAGAGTTTCTTCTTGGC+AGG 0.408256 6:-56690534 None:intergenic
CAGCAAGGATCTGTATTGGT+TGG 0.418992 6:+56683892 MsG0680033099.01.T01:CDS
GGCAGCAATACTCTAGAAAA+GGG 0.433854 6:-56690649 None:intergenic
AGGCAGCAATACTCTAGAAA+AGG 0.438600 6:-56690650 None:intergenic
TTTATATGTGCTATTCCTCA+TGG 0.440492 6:+56690773 MsG0680033099.01.T01:three_prime_UTR
AAATTCTCTTCGAACAAGTC+TGG 0.445054 6:-56689512 None:intergenic
TAGAAAAGGGGCAAGGTTGG+AGG 0.451262 6:-56690636 None:intergenic
TTCTCAGCAAGGATCTGTAT+TGG 0.454238 6:+56683888 MsG0680033099.01.T01:CDS
TTTATTGATAGTATGAAAGA+AGG 0.459024 6:+56683749 MsG0680033099.01.T01:intron
CACGTGAGAGGCGTTCTAAA+AGG 0.459804 6:+56689594 MsG0680033099.01.T01:CDS
TTTCCCATCAGTGGGCCATC+AGG 0.459856 6:-56683615 None:intergenic
CTCTAGAAAAGGGGCAAGGT+TGG 0.464145 6:-56690639 None:intergenic
AAGGCTTGGGACTGCATTGA+AGG 0.464607 6:+56689613 MsG0680033099.01.T01:CDS
AGCAGAGGCACTGTACCAAA+AGG 0.468975 6:+56688612 MsG0680033099.01.T01:CDS
ATGAAAGAAGGATTATATCT+TGG 0.474922 6:+56683761 MsG0680033099.01.T01:CDS
AAGTTTGGATGTAGCAATGT+TGG 0.476058 6:+56690682 MsG0680033099.01.T01:three_prime_UTR
AGTTCTGGGAACCCTAAAAC+AGG 0.477989 6:+56685280 MsG0680033099.01.T01:CDS
GAGAGGCGTTCTAAAAGGCT+TGG 0.483097 6:+56689599 MsG0680033099.01.T01:CDS
TAAGAAATTCGACATGAAGC+AGG 0.485720 6:-56683979 None:intergenic
AAAAGTTGGCAGACTTGACT+TGG 0.487209 6:+56689414 MsG0680033099.01.T01:intron
AGAGGCGTTCTAAAAGGCTT+GGG 0.492874 6:+56689600 MsG0680033099.01.T01:CDS
CATTACTTGATGAGATTGGA+TGG 0.500191 6:+56690568 MsG0680033099.01.T01:CDS
GGAAAATGATGAAGATCGCT+TGG 0.500822 6:+56685301 MsG0680033099.01.T01:CDS
TGGTTGGGGCAATTTCATAT+GGG 0.510926 6:+56683908 MsG0680033099.01.T01:CDS
TCAACCTGATGGCCCACTGA+TGG 0.513823 6:+56683611 MsG0680033099.01.T01:CDS
AATTTAATCGAATAACATCC+TGG 0.514157 6:-56683581 None:intergenic
GACTTGGTGTATATTGTCAA+AGG 0.514525 6:+56689430 MsG0680033099.01.T01:CDS
GCAGAGGCACTGTACCAAAA+GGG 0.515685 6:+56688613 MsG0680033099.01.T01:CDS
AGTCCTCATTATTGATTCCA+GGG 0.517050 6:+56683649 MsG0680033099.01.T01:CDS
TCTGTACCTCTTCATCATGA+TGG 0.517198 6:-56685957 None:intergenic
GATGGCCCACTGATGGGAAA+TGG 0.522971 6:+56683618 MsG0680033099.01.T01:CDS
CAACCTGATGGCCCACTGAT+GGG 0.532848 6:+56683612 MsG0680033099.01.T01:CDS
GTACCAAAAGGGGCTCGCGC+TGG 0.533765 6:+56688624 MsG0680033099.01.T01:CDS
AGATTATTCAAGAGCACGCA+TGG 0.535912 6:-56690714 None:intergenic
GTGCCTCTGCTAACTGGTCT+CGG 0.536496 6:-56688600 None:intergenic
GTTGATGAGGACAAGGGAAA+AGG 0.539660 6:+56684168 MsG0680033099.01.T01:CDS
CCGAAAGGTTGATGAGGACA+AGG 0.545522 6:+56684161 MsG0680033099.01.T01:intron
TAAAATCCATCATGATGAAG+AGG 0.546731 6:+56685951 MsG0680033099.01.T01:CDS
AGAAAAGGGGCAAGGTTGGA+GGG 0.550629 6:-56690635 None:intergenic
AAGGAACCATTTCCCATCAG+TGG 0.552113 6:-56683624 None:intergenic
GAGTATTGACAGGGAAGAGT+TGG 0.556628 6:+56686690 MsG0680033099.01.T01:CDS
GCAAGGATCTGTATTGGTTG+GGG 0.559601 6:+56683894 MsG0680033099.01.T01:CDS
TCCTCATGGTGTTTAGCAAG+AGG 0.561219 6:+56690787 MsG0680033099.01.T01:three_prime_UTR
AGGAACCATTTCCCATCAGT+GGG 0.569917 6:-56683623 None:intergenic
TTCTGAACGTATAAAAGAAG+AGG 0.570178 6:+56684218 MsG0680033099.01.T01:CDS
CAGACACTGACCTTATTTGG+AGG 0.571246 6:-56684009 None:intergenic
ATGTGATTGAGAGTATTGAC+AGG 0.580901 6:+56686680 MsG0680033099.01.T01:CDS
ATGATGAAGATCGCTTGGAG+TGG 0.598056 6:+56685306 MsG0680033099.01.T01:CDS
AAGAAATTCGACATGAAGCA+GGG 0.599900 6:-56683978 None:intergenic
TTTGGATGCAAAAGAAGATG+TGG 0.601302 6:+56689454 MsG0680033099.01.T01:CDS
CTTCTGCCGAAAGGTTGATG+AGG 0.601353 6:+56684155 MsG0680033099.01.T01:intron
TTCTTTACTGACTTTGAGTG+AGG 0.602209 6:-56685342 None:intergenic
CAGAGGCACTGTACCAAAAG+GGG 0.613079 6:+56688614 MsG0680033099.01.T01:CDS
ATACCCTGGAATCAATAATG+AGG 0.618990 6:-56683652 None:intergenic
GAGAAATCTACAGATGGCGG+CGG 0.620431 6:+56689482 MsG0680033099.01.T01:CDS
TCCAGAAGACGACGATGCAG+AGG 0.623045 6:+56686738 MsG0680033099.01.T01:CDS
GACAGTGAGAAATCTACAGA+TGG 0.628611 6:+56689476 MsG0680033099.01.T01:CDS
ATCTAAATATGGAATCCTCA+CGG 0.628784 6:+56689568 MsG0680033099.01.T01:CDS
ATGAGATTAACGATCTCTTG+AGG 0.641370 6:-56690821 None:intergenic
TCCTCACGGTAACACGTGAG+AGG 0.644464 6:+56689582 MsG0680033099.01.T01:CDS
TATCCGAGACCAGTTAGCAG+AGG 0.657582 6:+56688597 MsG0680033099.01.T01:CDS
ACCTCTTGCTAAACACCATG+AGG 0.664514 6:-56690788 None:intergenic
AGTGAGAAATCTACAGATGG+CGG 0.665608 6:+56689479 MsG0680033099.01.T01:CDS
AATACTCTAGAAAAGGGGCA+AGG 0.672462 6:-56690643 None:intergenic
GCAGCAATACTCTAGAAAAG+GGG 0.672956 6:-56690648 None:intergenic
CGAAAGGTTGATGAGGACAA+GGG 0.682211 6:+56684162 MsG0680033099.01.T01:intron
GCCTCTCACGTGTTACCGTG+AGG 0.682732 6:-56689583 None:intergenic
TAACTACATACGAGAGACAG+TGG 0.683359 6:+56690598 MsG0680033099.01.T01:CDS
AGATTAACGATCTCTTGAGG+TGG 0.690543 6:-56690818 None:intergenic
TGTGATTGAGAGTATTGACA+GGG 0.762987 6:+56686681 MsG0680033099.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATAAAAATAAAT+TGG - Chr6:56684720-56684739 None:intergenic 0.0%
!!! AAATTTTATTATTATTTTTT+CGG - Chr6:56690884-56690903 None:intergenic 0.0%
!! AAAAATAAAAAATAATGAAG+AGG - Chr6:56684848-56684867 None:intergenic 10.0%
!! ACATTTAATACTTAAAAATT+TGG - Chr6:56683696-56683715 None:intergenic 10.0%
!! AGTTAAAAAAAGATATAATA+TGG - Chr6:56686065-56686084 None:intergenic 10.0%
!! ATATATATATATATATAGTC+AGG - Chr6:56688220-56688239 None:intergenic 10.0%
!! CAAATAAAAAAAGAATAAAT+TGG - Chr6:56684756-56684775 None:intergenic 10.0%
!! CATTTAATACTTAAAAATTT+GGG - Chr6:56683695-56683714 None:intergenic 10.0%
!! CTTTATAATTAAAATAACAT+TGG - Chr6:56689860-56689879 None:intergenic 10.0%
!! GTAATAAATGTTTAAATTAA+TGG - Chr6:56683541-56683560 None:intergenic 10.0%
!! TTTAGATTAAATAGTTATAA+CGG + Chr6:56688147-56688166 MsG0680033099.01.T01:intron 10.0%
!! TTTCATATATATTAAAAGAA+AGG + Chr6:56687045-56687064 MsG0680033099.01.T01:intron 10.0%
!!! CAATTTATTCTTTTTTTATT+TGG + Chr6:56684754-56684773 MsG0680033099.01.T01:intron 10.0%
!!! TTTTTTTATCAAATAAAAGT+TGG + Chr6:56689400-56689419 MsG0680033099.01.T01:intron 10.0%
!! AACTTTCATTACTTATAATA+TGG + Chr6:56688721-56688740 MsG0680033099.01.T01:intron 15.0%
!! ACATTTACTTACTAAAAATA+AGG + Chr6:56690846-56690865 MsG0680033099.01.T01:three_prime_UTR 15.0%
!! ATAAGATTCATCTAATTAAA+CGG - Chr6:56687507-56687526 None:intergenic 15.0%
!! ATAGAAAATATCCTAATAAT+AGG + Chr6:56685583-56685602 MsG0680033099.01.T01:intron 15.0%
!! ATATATACATACATACATAT+AGG + Chr6:56684490-56684509 MsG0680033099.01.T01:intron 15.0%
!! CAAGAATTAATTAAAAATCA+TGG - Chr6:56687933-56687952 None:intergenic 15.0%
!! CACTTAAAACAAATAATATT+AGG - Chr6:56684984-56685003 None:intergenic 15.0%
!! CATAAAGAATTTATGTTATA+AGG - Chr6:56687229-56687248 None:intergenic 15.0%
!! GTTATAACTATTTAATCTAA+AGG - Chr6:56688148-56688167 None:intergenic 15.0%
!! TAAAAAAAGATATAATATGG+TGG - Chr6:56686062-56686081 None:intergenic 15.0%
!! TACAAGAATAAAATTGAATT+GGG + Chr6:56688356-56688375 MsG0680033099.01.T01:intron 15.0%
!! TATATACATACATACATATA+GGG + Chr6:56684491-56684510 MsG0680033099.01.T01:intron 15.0%
!! TGAAATTAGATTATGTAAAT+CGG - Chr6:56687005-56687024 None:intergenic 15.0%
!! TTACAAGAATAAAATTGAAT+TGG + Chr6:56688355-56688374 MsG0680033099.01.T01:intron 15.0%
!! TTATCAGTTATTTATCAATA+TGG - Chr6:56687086-56687105 None:intergenic 15.0%
!! TTTGAACTTATAATCATAAA+TGG - Chr6:56689948-56689967 None:intergenic 15.0%
!!! AGTTTAATTTACATACAATA+AGG - Chr6:56690144-56690163 None:intergenic 15.0%
!!! ATATTTCAAATATCTAAAGT+TGG - Chr6:56688520-56688539 None:intergenic 15.0%
!!! ATATTTTAAATTTTACTTCC+AGG + Chr6:56683563-56683582 MsG0680033099.01.T01:CDS 15.0%
!!! CTAATATTATTTGTTTTAAG+TGG + Chr6:56684982-56685001 MsG0680033099.01.T01:intron 15.0%
!! AAAAAAACCTCAATTTAAGA+TGG - Chr6:56684893-56684912 None:intergenic 20.0%
!! AAAAACAAAAAGAAATGATC+TGG - Chr6:56685679-56685698 None:intergenic 20.0%
!! AAAACAAATTTATGAAGCAT+AGG - Chr6:56688406-56688425 None:intergenic 20.0%
!! AAACAAATTTATGAAGCATA+GGG - Chr6:56688405-56688424 None:intergenic 20.0%
!! AAATATCCTAATAATAGGAA+TGG + Chr6:56685588-56685607 MsG0680033099.01.T01:intron 20.0%
!! AAATGTTACCATTATCATAA+TGG - Chr6:56689375-56689394 None:intergenic 20.0%
!! ACAAATACATTATGTACTAT+TGG - Chr6:56683854-56683873 None:intergenic 20.0%
!! ACATTATGATAACAAAGTAA+AGG - Chr6:56685126-56685145 None:intergenic 20.0%
!! AGATCTCAATGTTTATAATT+AGG + Chr6:56687828-56687847 MsG0680033099.01.T01:intron 20.0%
!! ATACACACATATATTTGTAT+TGG + Chr6:56688264-56688283 MsG0680033099.01.T01:intron 20.0%
!! ATGTATTATATACGTATGTA+TGG - Chr6:56684460-56684479 None:intergenic 20.0%
!! ATTTGAACAAAGCAAATTTA+AGG - Chr6:56685416-56685435 None:intergenic 20.0%
!! GATAAATAACTGATAATAGT+AGG + Chr6:56687090-56687109 MsG0680033099.01.T01:intron 20.0%
!! GATAATAGTAGGTTAATTTA+AGG + Chr6:56687101-56687120 MsG0680033099.01.T01:intron 20.0%
!! GTTAATATACACTTTCTAAT+TGG + Chr6:56686876-56686895 MsG0680033099.01.T01:intron 20.0%
!! GTTTAATTAGATGAATCTTA+TGG + Chr6:56687506-56687525 MsG0680033099.01.T01:intron 20.0%
!! TATATATCTATATATGAGTC+AGG + Chr6:56687434-56687453 MsG0680033099.01.T01:intron 20.0%
!! TTACAATTTCATATGAGAAA+GGG - Chr6:56687656-56687675 None:intergenic 20.0%
!! TTGAAATTAGACATTAATCA+AGG - Chr6:56684131-56684150 None:intergenic 20.0%
!! TTTACAATTTCATATGAGAA+AGG - Chr6:56687657-56687676 None:intergenic 20.0%
!! TTTGAACAAAGCAAATTTAA+GGG - Chr6:56685415-56685434 None:intergenic 20.0%
!!! AATAGATAACTTTTTTTTGG+TGG - Chr6:56685810-56685829 None:intergenic 20.0%
!!! ATTTTTGTAATCTCATCTTA+TGG + Chr6:56686198-56686217 MsG0680033099.01.T01:intron 20.0%
!!! CTTTTTCAAAAGAGTTATAT+TGG + Chr6:56689642-56689661 MsG0680033099.01.T01:intron 20.0%
!!! GAGAATAGATAACTTTTTTT+TGG - Chr6:56685813-56685832 None:intergenic 20.0%
!!! GATTTTGTATATCAATTACA+CGG - Chr6:56684622-56684641 None:intergenic 20.0%
!!! GTTAGATATTTGAAATAAGT+TGG + Chr6:56688468-56688487 MsG0680033099.01.T01:intron 20.0%
!!! TTTATTGATAGTATGAAAGA+AGG + Chr6:56683749-56683768 MsG0680033099.01.T01:intron 20.0%
! AAAAAAACAAAATAGTGCAC+GGG - Chr6:56686778-56686797 None:intergenic 25.0%
! AAATTGTCTCAACAAATGAT+TGG - Chr6:56689817-56689836 None:intergenic 25.0%
! AACAAATTGAGCTACAATTT+AGG + Chr6:56684649-56684668 MsG0680033099.01.T01:intron 25.0%
! AACAAGAATTGTGTTAAATG+AGG + Chr6:56688000-56688019 MsG0680033099.01.T01:intron 25.0%
! AATACATTATGTACTATTGG+TGG - Chr6:56683851-56683870 None:intergenic 25.0%
! AATCAATAATGAGGACTTAA+AGG - Chr6:56683646-56683665 None:intergenic 25.0%
! AATTATTGAATAAGGAAGTG+AGG - Chr6:56686443-56686462 None:intergenic 25.0%
! AATTTAATCGAATAACATCC+TGG - Chr6:56683584-56683603 None:intergenic 25.0%
! ACAAGAATTGTGTTAAATGA+GGG + Chr6:56688001-56688020 MsG0680033099.01.T01:intron 25.0%
! AGATGCAAAAATAAAAGTTC+TGG + Chr6:56685265-56685284 MsG0680033099.01.T01:CDS 25.0%
! AGCTAAATTGTAACCTTTAT+TGG + Chr6:56686238-56686257 MsG0680033099.01.T01:intron 25.0%
! ATAAGGATAAATTCATCGAT+GGG - Chr6:56687212-56687231 None:intergenic 25.0%
! ATATACAAAATAAGCAGCAA+AGG - Chr6:56686935-56686954 None:intergenic 25.0%
! ATATAGAAGTAAGTAGCTTA+GGG + Chr6:56689005-56689024 MsG0680033099.01.T01:intron 25.0%
! ATATTGCAAAAGCTATTGTA+TGG + Chr6:56685438-56685457 MsG0680033099.01.T01:intron 25.0%
! ATGAAAGAAGGATTATATCT+TGG + Chr6:56683761-56683780 MsG0680033099.01.T01:CDS 25.0%
! ATGAAATGTAAAGATTACTG+AGG - Chr6:56686606-56686625 None:intergenic 25.0%
! ATGTATGGAAAAAGCAAATT+CGG - Chr6:56684445-56684464 None:intergenic 25.0%
! ATGTGGAAATTCAAAATTGA+TGG - Chr6:56688813-56688832 None:intergenic 25.0%
! ATTGAAATAATGCAAAACTG+AGG + Chr6:56686390-56686409 MsG0680033099.01.T01:intron 25.0%
! CAAAAAAACAAAATAGTGCA+CGG - Chr6:56686779-56686798 None:intergenic 25.0%
! CAAACATCACTATCAATAAA+AGG - Chr6:56685030-56685049 None:intergenic 25.0%
! CAAGTAAAAATACACTAGAA+TGG - Chr6:56690393-56690412 None:intergenic 25.0%
! CATATCTACTATGTAGATTA+AGG + Chr6:56685500-56685519 MsG0680033099.01.T01:intron 25.0%
! CTGAATAAAAGTGATACTAA+GGG - Chr6:56684051-56684070 None:intergenic 25.0%
! CTGTAAATATATCATAGCTT+AGG - Chr6:56689031-56689050 None:intergenic 25.0%
! GAGATTAAACGATCATTAAA+CGG - Chr6:56688547-56688566 None:intergenic 25.0%
! GATGCAAAAATAAAAGTTCT+GGG + Chr6:56685266-56685285 MsG0680033099.01.T01:CDS 25.0%
! GATGTAAAGTCATCTAAATA+TGG + Chr6:56689557-56689576 MsG0680033099.01.T01:CDS 25.0%
! TAAAAAATAATGAAGAGGCA+TGG - Chr6:56684843-56684862 None:intergenic 25.0%
! TACAATTTCATATGAGAAAG+GGG - Chr6:56687655-56687674 None:intergenic 25.0%
! TACATTTCATGTATAAACCA+TGG + Chr6:56686616-56686635 MsG0680033099.01.T01:intron 25.0%
! TAGAAGTTTATTTGATGAAC+AGG + Chr6:56687326-56687345 MsG0680033099.01.T01:intron 25.0%
! TATAAGGATAAATTCATCGA+TGG - Chr6:56687213-56687232 None:intergenic 25.0%
! TATATAGAAGTAAGTAGCTT+AGG + Chr6:56689004-56689023 MsG0680033099.01.T01:intron 25.0%
! TATGATGAAAATCATACAGA+AGG - Chr6:56690270-56690289 None:intergenic 25.0%
! TGTGGAAATTCAAAATTGAT+GGG - Chr6:56688812-56688831 None:intergenic 25.0%
! TTATTTCAAATATCTAACGC+TGG - Chr6:56688466-56688485 None:intergenic 25.0%
! TTGTTAGTGACAATATGATT+AGG - Chr6:56684809-56684828 None:intergenic 25.0%
! TTTGCTTGTAAAGAAAATGT+CGG + Chr6:56689316-56689335 MsG0680033099.01.T01:intron 25.0%
!! AAAAAACAGCAATTTTGTGA+AGG - Chr6:56690199-56690218 None:intergenic 25.0%
!! AAAGATATAATATGGTGGAA+AGG - Chr6:56686057-56686076 None:intergenic 25.0%
!! ATTAATGGATGAATTCAAAC+TGG - Chr6:56683526-56683545 None:intergenic 25.0%
!! TAATGTTATGACTAGTTAAC+AGG - Chr6:56688885-56688904 None:intergenic 25.0%
!! TTCATCATTTTCCTGTTTTA+GGG - Chr6:56685294-56685313 None:intergenic 25.0%
!!! AAAGTTGGTAATGATAAAAG+TGG - Chr6:56688505-56688524 None:intergenic 25.0%
!!! CTTTTTTGTTTTCTTGAGTA+AGG - Chr6:56686370-56686389 None:intergenic 25.0%
!!! TATCCAACAATGGTTTTAAT+AGG + Chr6:56686284-56686303 MsG0680033099.01.T01:intron 25.0%
!!! TTTATATTGACTTGTTCATC+AGG + Chr6:56685238-56685257 MsG0680033099.01.T01:intron 25.0%
!!! TTTGCTGCTTATTTTGTATA+TGG + Chr6:56686934-56686953 MsG0680033099.01.T01:intron 25.0%
!!! TTTTAACTCATCAAATGATG+TGG - Chr6:56690052-56690071 None:intergenic 25.0%
AAAAAACAAAATAGTGCACG+GGG - Chr6:56686777-56686796 None:intergenic 30.0%
AAAGAATGATAACACTTCAG+TGG - Chr6:56687581-56687600 None:intergenic 30.0%
AAAGTGTACATGCATCAATT+GGG + Chr6:56684928-56684947 MsG0680033099.01.T01:intron 30.0%
AATAAAAGTGATACTAAGGG+AGG - Chr6:56684048-56684067 None:intergenic 30.0%
AATTGGAATCCTTCATGATT+AGG - Chr6:56687370-56687389 None:intergenic 30.0%
ACAATTTCATATGAGAAAGG+GGG - Chr6:56687654-56687673 None:intergenic 30.0%
AGAATAAAATTGAATTGGGC+TGG + Chr6:56688360-56688379 MsG0680033099.01.T01:intron 30.0%
AGTCACATCCATTATGATAA+TGG + Chr6:56689364-56689383 MsG0680033099.01.T01:intron 30.0%
ATAACATGATTACATTGTGC+AGG + Chr6:56686639-56686658 MsG0680033099.01.T01:intron 30.0%
ATCTAAATATGGAATCCTCA+CGG + Chr6:56689568-56689587 MsG0680033099.01.T01:CDS 30.0%
CAATGTAATCATGTTATCCA+TGG - Chr6:56686636-56686655 None:intergenic 30.0%
CACAGTATTATTTCCAAATG+AGG - Chr6:56688860-56688879 None:intergenic 30.0%
CATCCAAACTTTATTCCAAT+AGG - Chr6:56690673-56690692 None:intergenic 30.0%
CATGTAGACATAAAATTTCC+AGG + Chr6:56684409-56684428 MsG0680033099.01.T01:intron 30.0%
CCAACTTTATCTTATGATTC+TGG + Chr6:56689702-56689721 MsG0680033099.01.T01:intron 30.0%
CCAGAATCATAAGATAAAGT+TGG - Chr6:56689705-56689724 None:intergenic 30.0%
CTAATAATAGGAATGGAGAT+AGG + Chr6:56685595-56685614 MsG0680033099.01.T01:intron 30.0%
CTAATTAAACGGATGAGATT+TGG - Chr6:56687496-56687515 None:intergenic 30.0%
CTATCTCCATTCCTATTATT+AGG - Chr6:56685597-56685616 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + Chr6:56685762-56685781 MsG0680033099.01.T01:intron 30.0%
GCTGAATAAAAGTGATACTA+AGG - Chr6:56684052-56684071 None:intergenic 30.0%
GGTATATTAGTCATCATACT+TGG + Chr6:56684239-56684258 MsG0680033099.01.T01:intron 30.0%
GTGTATATTGTCAAAGGATT+TGG + Chr6:56689436-56689455 MsG0680033099.01.T01:CDS 30.0%
GTTCCTATTAAAACCATTGT+TGG - Chr6:56686290-56686309 None:intergenic 30.0%
TAAAATCCATCATGATGAAG+AGG + Chr6:56685951-56685970 MsG0680033099.01.T01:CDS 30.0%
TAGTGACAATATGATTAGGA+GGG - Chr6:56684805-56684824 None:intergenic 30.0%
TAGTTATAACGGTTCAGATT+TGG + Chr6:56688158-56688177 MsG0680033099.01.T01:intron 30.0%
TATGTAGATTAAGGAACGAT+TGG + Chr6:56685509-56685528 MsG0680033099.01.T01:intron 30.0%
TCCAACAAAAATATAGCATG+TGG - Chr6:56688115-56688134 None:intergenic 30.0%
TCGTTTCTCATACAAGATAT+TGG - Chr6:56684534-56684553 None:intergenic 30.0%
TGAGATCTTGCATCTAATAA+TGG - Chr6:56687816-56687835 None:intergenic 30.0%
TGATATGTCTTACTGAACAT+CGG - Chr6:56689899-56689918 None:intergenic 30.0%
TGTTTCTCCATCTTAAATTG+AGG + Chr6:56684883-56684902 MsG0680033099.01.T01:intron 30.0%
TTAGTGACAATATGATTAGG+AGG - Chr6:56684806-56684825 None:intergenic 30.0%
TTATGTAGTTCCTCCAAATA+AGG + Chr6:56683999-56684018 MsG0680033099.01.T01:CDS 30.0%
TTCTGAACGTATAAAAGAAG+AGG + Chr6:56684218-56684237 MsG0680033099.01.T01:CDS 30.0%
TTTACCAATACAGTACATGT+GGG - Chr6:56689240-56689259 None:intergenic 30.0%
! ACTATCATTTTATGATCAGC+AGG + Chr6:56683933-56683952 MsG0680033099.01.T01:CDS 30.0%
! AGTAAAAGCTCTAACCTTTA+AGG - Chr6:56688662-56688681 None:intergenic 30.0%
! ATATAATATGGTGGAAAGGA+AGG - Chr6:56686053-56686072 None:intergenic 30.0%
! ATGCATGATTTTCAACTTCT+TGG - Chr6:56686162-56686181 None:intergenic 30.0%
! CATTTTACTCCTAATCATGA+AGG + Chr6:56687358-56687377 MsG0680033099.01.T01:intron 30.0%
! CTCTCTGAAAAATTTCGATT+AGG - Chr6:56687175-56687194 None:intergenic 30.0%
! CTTCATCATTTTCCTGTTTT+AGG - Chr6:56685295-56685314 None:intergenic 30.0%
! GCTCTTGAATAATCTTTTTG+AGG + Chr6:56690722-56690741 MsG0680033099.01.T01:three_prime_UTR 30.0%
! GTGAACTTTTTATCCAACAA+TGG + Chr6:56686274-56686293 MsG0680033099.01.T01:intron 30.0%
! TATAATATGGTGGAAAGGAA+GGG - Chr6:56686052-56686071 None:intergenic 30.0%
! TGGTAATGATAAAAGTGGTT+GGG - Chr6:56688446-56688465 None:intergenic 30.0%
! TGTTTTATATTCACCCATCT+AGG - Chr6:56688775-56688794 None:intergenic 30.0%
! TTTATATGTGCTATTCCTCA+TGG + Chr6:56690773-56690792 MsG0680033099.01.T01:three_prime_UTR 30.0%
! TTTTACCAATACAGTACATG+TGG - Chr6:56689241-56689260 None:intergenic 30.0%
!! AACAGTCTTTTTGGTAGATA+TGG - Chr6:56684199-56684218 None:intergenic 30.0%
!! ACCACATGCTATATTTTTGT+TGG + Chr6:56688111-56688130 MsG0680033099.01.T01:intron 30.0%
!! TAGTATCACTTTTATTCAGC+TGG + Chr6:56684052-56684071 MsG0680033099.01.T01:intron 30.0%
!! TTGGTAATGATAAAAGTGGT+TGG - Chr6:56688501-56688520 None:intergenic 30.0%
!! TTTTGGAAGGTTTAGTTTCT+AGG + Chr6:56685914-56685933 MsG0680033099.01.T01:CDS 30.0%
!!! AATTTTTTCTCTCAACCTGA+TGG + Chr6:56683600-56683619 MsG0680033099.01.T01:CDS 30.0%
!!! AGATAACTTTTTTTTGGTGG+TGG - Chr6:56685807-56685826 None:intergenic 30.0%
!!! ATTTTCTAGAGCTGAAGAAA+TGG + Chr6:56689531-56689550 MsG0680033099.01.T01:CDS 30.0%
!!! CAATGGTTTTAATAGGAACT+AGG + Chr6:56686291-56686310 MsG0680033099.01.T01:intron 30.0%
!!! GTTTGGTTTTGCTTGATTAT+AGG - Chr6:56689795-56689814 None:intergenic 30.0%
!!! TTTTCTAGAGCTGAAGAAAT+GGG + Chr6:56689532-56689551 MsG0680033099.01.T01:CDS 30.0%
AAATTCGGTACAAGTATTCC+TGG - Chr6:56684430-56684449 None:intergenic 35.0%
AAATTCTCTTCGAACAAGTC+TGG - Chr6:56689515-56689534 None:intergenic 35.0%
AAGAAATTCGACATGAAGCA+GGG - Chr6:56683981-56684000 None:intergenic 35.0%
AAGACAGGTAATGTGACATT+GGG + Chr6:56690431-56690450 MsG0680033099.01.T01:intron 35.0%
AAGTTTGGATGTAGCAATGT+TGG + Chr6:56690682-56690701 MsG0680033099.01.T01:three_prime_UTR 35.0%
ACAAAAAGAAAAGCTTCCCA+AGG + Chr6:56683790-56683809 MsG0680033099.01.T01:CDS 35.0%
ACACACAAGCGAATCATAAT+TGG - Chr6:56687387-56687406 None:intergenic 35.0%
ACCTACAAATAAGCTTACCA+AGG - Chr6:56689767-56689786 None:intergenic 35.0%
ACTATAGATACATTGCCTAG+AGG + Chr6:56689141-56689160 MsG0680033099.01.T01:intron 35.0%
ACTTGTCATACCAATTGATG+TGG + Chr6:56690079-56690098 MsG0680033099.01.T01:intron 35.0%
AGAGAATGTACTCCTTGAAT+AGG + Chr6:56685468-56685487 MsG0680033099.01.T01:intron 35.0%
AGCAGAGGTTCATATAAGAT+TGG - Chr6:56690468-56690487 None:intergenic 35.0%
AGTAGATCATGCTCCAATAA+AGG - Chr6:56686254-56686273 None:intergenic 35.0%
ATAAAAGCAGATTCAACCAC+AGG - Chr6:56684103-56684122 None:intergenic 35.0%
ATACCCTGGAATCAATAATG+AGG - Chr6:56683655-56683674 None:intergenic 35.0%
ATCTATGAGCTTAGCTCAAT+TGG + Chr6:56685735-56685754 MsG0680033099.01.T01:intron 35.0%
ATGAGATTAACGATCTCTTG+AGG - Chr6:56690824-56690843 None:intergenic 35.0%
ATGTGTAACTCTCCTATTCA+AGG - Chr6:56685483-56685502 None:intergenic 35.0%
ATGTGTGAGATCTCTGTAAT+CGG - Chr6:56686346-56686365 None:intergenic 35.0%
ATTAAGATCCATGTCACTAC+AGG - Chr6:56690326-56690345 None:intergenic 35.0%
ATTGATTAACTGACTGAGCA+GGG + Chr6:56684371-56684390 MsG0680033099.01.T01:intron 35.0%
CAAAGTAACAGATAAACTGC+AGG - Chr6:56690245-56690264 None:intergenic 35.0%
CAAAGTGTACATGCATCAAT+TGG + Chr6:56684927-56684946 MsG0680033099.01.T01:intron 35.0%
CAATTGATGCATGTACACTT+TGG - Chr6:56684929-56684948 None:intergenic 35.0%
CACGCGTTAATTAAATCTGA+TGG - Chr6:56684573-56684592 None:intergenic 35.0%
CATAAAATATGCAAGGTCTG+GGG + Chr6:56685769-56685788 MsG0680033099.01.T01:intron 35.0%
CATTACTTGATGAGATTGGA+TGG + Chr6:56690568-56690587 MsG0680033099.01.T01:CDS 35.0%
CTATAGATACATTGCCTAGA+GGG + Chr6:56689142-56689161 MsG0680033099.01.T01:intron 35.0%
CTCTCATTACTTGATGAGAT+TGG + Chr6:56690564-56690583 MsG0680033099.01.T01:CDS 35.0%
CTGCCTATTGGAATAAAGTT+TGG + Chr6:56690667-56690686 MsG0680033099.01.T01:three_prime_UTR 35.0%
CTGTAAACATTTCACAGTGA+TGG + Chr6:56687271-56687290 MsG0680033099.01.T01:intron 35.0%
GACAGTGAACAAAATACCTT+GGG - Chr6:56683809-56683828 None:intergenic 35.0%
GATGTAGCAATGTTGGAATA+TGG + Chr6:56690689-56690708 MsG0680033099.01.T01:three_prime_UTR 35.0%
GCATAAAATATGCAAGGTCT+GGG + Chr6:56685768-56685787 MsG0680033099.01.T01:intron 35.0%
GTACAAACACTCAATGAATG+TGG - Chr6:56688830-56688849 None:intergenic 35.0%
GTTGTATACAGTAATCACAC+AGG - Chr6:56690304-56690323 None:intergenic 35.0%
TAAAGATTACTGAGGTAGCA+AGG - Chr6:56686598-56686617 None:intergenic 35.0%
TAAGAAATTCGACATGAAGC+AGG - Chr6:56683982-56684001 None:intergenic 35.0%
TAATACGTGAAAAATGCACG+AGG - Chr6:56686495-56686514 None:intergenic 35.0%
TAATCTCACTGCAGAATAAC+AGG + Chr6:56688560-56688579 MsG0680033099.01.T01:intron 35.0%
TAGCTCATAGAGTTTCTTCT+TGG - Chr6:56690541-56690560 None:intergenic 35.0%
TCCTTGGTAAGCTTATTTGT+AGG + Chr6:56689763-56689782 MsG0680033099.01.T01:intron 35.0%
TGAACACCTTGAATGCTATA+TGG + Chr6:56686085-56686104 MsG0680033099.01.T01:intron 35.0%
TGACATGGATCTTAATATCC+AGG + Chr6:56690330-56690349 MsG0680033099.01.T01:intron 35.0%
TGATGTATTGCCACATCAAT+TGG - Chr6:56690092-56690111 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + Chr6:56685767-56685786 MsG0680033099.01.T01:intron 35.0%
TGCTAACAACAAACACACTA+TGG + Chr6:56687623-56687642 MsG0680033099.01.T01:intron 35.0%
TTAAGATGGAGAAACATGCA+TGG - Chr6:56684879-56684898 None:intergenic 35.0%
TTGTACGATAAGTCCTCATT+TGG + Chr6:56688844-56688863 MsG0680033099.01.T01:intron 35.0%
TTTGGATGCAAAAGAAGATG+TGG + Chr6:56689454-56689473 MsG0680033099.01.T01:CDS 35.0%
! AACGCTGGTAATGATAAAAG+TGG - Chr6:56688451-56688470 None:intergenic 35.0%
! AAGCTTTTCACATATTCACG+TGG + Chr6:56689268-56689287 MsG0680033099.01.T01:intron 35.0%
! ACGTTCAGAAACAGTCTTTT+TGG - Chr6:56684208-56684227 None:intergenic 35.0%
! ATACATATAGGGAGCATATC+CGG + Chr6:56684502-56684521 MsG0680033099.01.T01:intron 35.0%
! ATTGGTGGTAATATCGAAAG+AGG - Chr6:56683836-56683855 None:intergenic 35.0%
! ATTTTGCAGAATTCTCAGCA+AGG + Chr6:56683877-56683896 MsG0680033099.01.T01:intron 35.0%
! CTGCAGTTTATCTGTTACTT+TGG + Chr6:56690243-56690262 MsG0680033099.01.T01:intron 35.0%
! CTTCTTGGTAATAGAAAAGC+AGG - Chr6:56686147-56686166 None:intergenic 35.0%
! GCAAGCAATGAAGTGTATTT+TGG - Chr6:56685889-56685908 None:intergenic 35.0%
! GTATAGCTTTTCTACACTGA+CGG - Chr6:56690007-56690026 None:intergenic 35.0%
! GTCTCAACAAATGATTGGTT+TGG - Chr6:56689812-56689831 None:intergenic 35.0%
! TAATGGATGTGACTCATTTG+AGG - Chr6:56689358-56689377 None:intergenic 35.0%
! TATTGATTAACTGACTGAGC+AGG + Chr6:56684370-56684389 MsG0680033099.01.T01:intron 35.0%
! TTCAATTTTCTTCTGCCGAA+AGG + Chr6:56684146-56684165 MsG0680033099.01.T01:intron 35.0%
! TTCATTGCTTGCGAAGATTT+TGG + Chr6:56685897-56685916 MsG0680033099.01.T01:CDS 35.0%
! TTGGGAAGCTTTTCTTTTTG+TGG - Chr6:56683791-56683810 None:intergenic 35.0%
!! AAGTCCTCATTATTGATTCC+AGG + Chr6:56683648-56683667 MsG0680033099.01.T01:CDS 35.0%
!! AGTCCTCATTATTGATTCCA+GGG + Chr6:56683649-56683668 MsG0680033099.01.T01:CDS 35.0%
!! ATGTGATTGAGAGTATTGAC+AGG + Chr6:56686680-56686699 MsG0680033099.01.T01:CDS 35.0%
!! GACTTGGTGTATATTGTCAA+AGG + Chr6:56689430-56689449 MsG0680033099.01.T01:CDS 35.0%
!! TACAAGATATTGGTTCTCAC+CGG - Chr6:56684524-56684543 None:intergenic 35.0%
!! TGTGATTGAGAGTATTGACA+GGG + Chr6:56686681-56686700 MsG0680033099.01.T01:CDS 35.0%
!! TTCTTTACTGACTTTGAGTG+AGG - Chr6:56685345-56685364 None:intergenic 35.0%
!!! AAAGTCTTTTGACTTACACC+TGG + Chr6:56688183-56688202 MsG0680033099.01.T01:intron 35.0%
!!! AGTGGTTGTGATAGCTTTTT+TGG - Chr6:56688433-56688452 None:intergenic 35.0%
!!! TCATGATTTTTAGCTTGTCC+TGG - Chr6:56690351-56690370 None:intergenic 35.0%
AAAAATGCACGAGGAAAGGA+TGG - Chr6:56686486-56686505 None:intergenic 40.0%
AAAAGTTGGCAGACTTGACT+TGG + Chr6:56689414-56689433 MsG0680033099.01.T01:intron 40.0%
AAATTCATCGATGGGTCCAT+GGG - Chr6:56687204-56687223 None:intergenic 40.0%
ACAAGTCTATGTTACTCAGG+TGG - Chr6:56689731-56689750 None:intergenic 40.0%
ACACTTTCTAATTGGCCCAT+CGG + Chr6:56686884-56686903 MsG0680033099.01.T01:intron 40.0%
ACAGAGAAGTGACAGAAGAA+AGG - Chr6:56686024-56686043 None:intergenic 40.0%
AGACAGACACTGACCTTATT+TGG - Chr6:56684015-56684034 None:intergenic 40.0%
AGATAGAAACCTAGCCTAGA+TGG + Chr6:56688758-56688777 MsG0680033099.01.T01:intron 40.0%
AGATTAACGATCTCTTGAGG+TGG - Chr6:56690821-56690840 None:intergenic 40.0%
AGTGAGAAATCTACAGATGG+CGG + Chr6:56689479-56689498 MsG0680033099.01.T01:CDS 40.0%
ATAATGGCAGCAGATGATAG+TGG - Chr6:56687800-56687819 None:intergenic 40.0%
ATGTTAGCAGCAACACTTAC+AGG - Chr6:56687604-56687623 None:intergenic 40.0%
ATGTTGCAGGTTTGCGTTAT+GGG - Chr6:56686521-56686540 None:intergenic 40.0%
CAATATGATTAGGAGGGAGT+AGG - Chr6:56684799-56684818 None:intergenic 40.0%
CACCTTGAATGCTATATGGT+TGG + Chr6:56686089-56686108 MsG0680033099.01.T01:intron 40.0%
CCTACAAGTCTATGTTACTC+AGG - Chr6:56689734-56689753 None:intergenic 40.0%
CCTGAGTAACATAGACTTGT+AGG + Chr6:56689731-56689750 MsG0680033099.01.T01:intron 40.0%
CGACAGTGAACAAAATACCT+TGG - Chr6:56683810-56683829 None:intergenic 40.0%
GAAACTGATTGCTACTAACG+AGG - Chr6:56684692-56684711 None:intergenic 40.0%
GAAGACAGGTAATGTGACAT+TGG + Chr6:56690430-56690449 MsG0680033099.01.T01:intron 40.0%
GACAGTGAGAAATCTACAGA+TGG + Chr6:56689476-56689495 MsG0680033099.01.T01:CDS 40.0%
GACCAACCATATAGCATTCA+AGG - Chr6:56686094-56686113 None:intergenic 40.0%
GATAGAAACCTAGCCTAGAT+GGG + Chr6:56688759-56688778 MsG0680033099.01.T01:intron 40.0%
GATATAAGAGAGAAGCCGAT+GGG - Chr6:56686902-56686921 None:intergenic 40.0%
GCAACTCACTCACAAAGAAT+TGG - Chr6:56687866-56687885 None:intergenic 40.0%
GCTTGTAAAGAAAATGTCGG+AGG + Chr6:56689319-56689338 MsG0680033099.01.T01:intron 40.0%
GGAAAATGATGAAGATCGCT+TGG + Chr6:56685301-56685320 MsG0680033099.01.T01:CDS 40.0%
GGAGAAACAGATGAAGACAA+AGG - Chr6:56685394-56685413 None:intergenic 40.0%
GGCAGAGATTGAATCCTTAA+AGG + Chr6:56688645-56688664 MsG0680033099.01.T01:CDS 40.0%
GGTCAACATTAAGAGAAAGC+AGG - Chr6:56688094-56688113 None:intergenic 40.0%
GTATACAACCTGTAGTGACA+TGG + Chr6:56690315-56690334 MsG0680033099.01.T01:intron 40.0%
TAAATTCATCGATGGGTCCA+TGG - Chr6:56687205-56687224 None:intergenic 40.0%
TAACAGATAAACTGCAGGCA+GGG - Chr6:56690240-56690259 None:intergenic 40.0%
TAACTACATACGAGAGACAG+TGG + Chr6:56690598-56690617 MsG0680033099.01.T01:CDS 40.0%
TAGGAAACTAAGCAAGTCAC+TGG + Chr6:56689175-56689194 MsG0680033099.01.T01:intron 40.0%
TAGGAGGGAGTAGGATAAAT+CGG - Chr6:56684790-56684809 None:intergenic 40.0%
TATATTCACCCATCTAGGCT+AGG - Chr6:56688770-56688789 None:intergenic 40.0%
TCAAACCTACTAACATACCC+TGG - Chr6:56683669-56683688 None:intergenic 40.0%
TCATAGAGTTTCTTCTTGGC+AGG - Chr6:56690537-56690556 None:intergenic 40.0%
TCCTATGCATTCTGCAATAC+CGG + Chr6:56687758-56687777 MsG0680033099.01.T01:intron 40.0%
TCTGTACCTCTTCATCATGA+TGG - Chr6:56685960-56685979 None:intergenic 40.0%
TGAGCTTAGCTCAATTGGTA+AGG + Chr6:56685740-56685759 MsG0680033099.01.T01:intron 40.0%
TGATATAAGAGAGAAGCCGA+TGG - Chr6:56686903-56686922 None:intergenic 40.0%
TGATGCATGTACACTTTGGT+TGG - Chr6:56684925-56684944 None:intergenic 40.0%
TGATTCCAGGGTATGTTAGT+AGG + Chr6:56683661-56683680 MsG0680033099.01.T01:intron 40.0%
TGGTTGGGGCAATTTCATAT+GGG + Chr6:56683908-56683927 MsG0680033099.01.T01:CDS 40.0%
TGTACACTTTGGTTGGATGA+AGG - Chr6:56684918-56684937 None:intergenic 40.0%
TGTGTGAGATCTCTGTAATC+GGG - Chr6:56686345-56686364 None:intergenic 40.0%
TTCTCAGCAAGGATCTGTAT+TGG + Chr6:56683888-56683907 MsG0680033099.01.T01:CDS 40.0%
TTGGTTGGGGCAATTTCATA+TGG + Chr6:56683907-56683926 MsG0680033099.01.T01:CDS 40.0%
TTGTAGGTTTCTTTGCTCCT+TGG + Chr6:56689747-56689766 MsG0680033099.01.T01:intron 40.0%
TTTCAGAGAGTTAGTTCCCA+TGG + Chr6:56687185-56687204 MsG0680033099.01.T01:intron 40.0%
! AATAATGAAGAGGCATGGTG+CGG - Chr6:56684838-56684857 None:intergenic 40.0%
! AATACTCTAGAAAAGGGGCA+AGG - Chr6:56690646-56690665 None:intergenic 40.0%
! AGATTATTCAAGAGCACGCA+TGG - Chr6:56690717-56690736 None:intergenic 40.0%
! AGGCAGCAATACTCTAGAAA+AGG - Chr6:56690653-56690672 None:intergenic 40.0%
! CTTGGTATCTGCTTCACTTT+TGG + Chr6:56684257-56684276 MsG0680033099.01.T01:intron 40.0%
! GATGATGATGATGAGAAGAC+AGG + Chr6:56690416-56690435 MsG0680033099.01.T01:intron 40.0%
! GCAGCAATACTCTAGAAAAG+GGG - Chr6:56690651-56690670 None:intergenic 40.0%
! GGAAGCTTTTCTTTTTGTGG+TGG - Chr6:56683788-56683807 None:intergenic 40.0%
! GGCAGCAATACTCTAGAAAA+GGG - Chr6:56690652-56690671 None:intergenic 40.0%
! GTATTTTTCCGATTGCTCCA+TGG - Chr6:56688058-56688077 None:intergenic 40.0%
! TTGCTTGCGAAGATTTTGGA+AGG + Chr6:56685901-56685920 MsG0680033099.01.T01:CDS 40.0%
!! AGCAAGGATCTGTATTGGTT+GGG + Chr6:56683893-56683912 MsG0680033099.01.T01:CDS 40.0%
!! AGTGACTTGCTTAGTTTCCT+AGG - Chr6:56689176-56689195 None:intergenic 40.0%
!! TCAGAGAGTACCTGAATCAA+GGG - Chr6:56690492-56690511 None:intergenic 40.0%
!! TCTAGAGTATTGCTGCCTAT+TGG + Chr6:56690655-56690674 MsG0680033099.01.T01:exon 40.0%
!!! AACTTTTTTTTGGTGGTGGC+CGG - Chr6:56685803-56685822 None:intergenic 40.0%
!!! CAATACCGGTTTTGATGAAG+CGG + Chr6:56687772-56687791 MsG0680033099.01.T01:intron 40.0%
AACAGATAAACTGCAGGCAG+GGG - Chr6:56690239-56690258 None:intergenic 45.0%
AAGGAACCATTTCCCATCAG+TGG - Chr6:56683627-56683646 None:intergenic 45.0%
AAGTGACAGAAGAAAGGTGG+TGG - Chr6:56686018-56686037 None:intergenic 45.0%
AATAAGGAAGTGAGGCCTTG+AGG - Chr6:56686435-56686454 None:intergenic 45.0%
ACCGGTATTGCAGAATGCAT+AGG - Chr6:56687762-56687781 None:intergenic 45.0%
ACCTCTTGCTAAACACCATG+AGG - Chr6:56690791-56690810 None:intergenic 45.0%
AGAAGGAACCATGGAGCAAT+CGG + Chr6:56688047-56688066 MsG0680033099.01.T01:intron 45.0%
AGGAACCATTTCCCATCAGT+GGG - Chr6:56683626-56683645 None:intergenic 45.0%
AGGTAGCAAGGATGAGCTAA+AGG - Chr6:56686586-56686605 None:intergenic 45.0%
AGTGACAGAAGAAAGGTGGT+GGG - Chr6:56686017-56686036 None:intergenic 45.0%
ATGATGAAGATCGCTTGGAG+TGG + Chr6:56685306-56685325 MsG0680033099.01.T01:CDS 45.0%
ATGATGTGGCATCACGTCAT+TGG - Chr6:56690038-56690057 None:intergenic 45.0%
ATTCAACCACAGGACAGAAC+AGG - Chr6:56684093-56684112 None:intergenic 45.0%
CAGAATGCATAGGAGAAGCT+AGG - Chr6:56687752-56687771 None:intergenic 45.0%
CAGGTAATGTGACATTGGGT+AGG + Chr6:56690435-56690454 MsG0680033099.01.T01:intron 45.0%
CATGTTGCAGGTTTGCGTTA+TGG - Chr6:56686522-56686541 None:intergenic 45.0%
CCTAGAGGGTAACATTTCCT+AGG + Chr6:56689156-56689175 MsG0680033099.01.T01:intron 45.0%
CCTAGGAAATGTTACCCTCT+AGG - Chr6:56689159-56689178 None:intergenic 45.0%
CCTTGTCCTCATCAACCTTT+CGG - Chr6:56684164-56684183 None:intergenic 45.0%
CGTGAAAAATGCACGAGGAA+AGG - Chr6:56686490-56686509 None:intergenic 45.0%
CGTGTGTCTGAATAGCACAA+CGG + Chr6:56688972-56688991 MsG0680033099.01.T01:intron 45.0%
GACAAATTGAGAGACGACAC+CGG + Chr6:56688023-56688042 MsG0680033099.01.T01:intron 45.0%
GAGAAGTGACAGAAGAAAGG+TGG - Chr6:56686021-56686040 None:intergenic 45.0%
GGATGTGACTCATTTGAGGA+GGG - Chr6:56689354-56689373 None:intergenic 45.0%
GTAACAGATAAACTGCAGGC+AGG - Chr6:56690241-56690260 None:intergenic 45.0%
GTGTGAGATCTCTGTAATCG+GGG - Chr6:56686344-56686363 None:intergenic 45.0%
GTTGCCCACATGTACTGTAT+TGG + Chr6:56689233-56689252 MsG0680033099.01.T01:intron 45.0%
TATGAAGCATAGGGAACCTC+TGG - Chr6:56688396-56688415 None:intergenic 45.0%
TCCTCATGGTGTTTAGCAAG+AGG + Chr6:56690787-56690806 MsG0680033099.01.T01:three_prime_UTR 45.0%
TGGATGTGACTCATTTGAGG+AGG - Chr6:56689355-56689374 None:intergenic 45.0%
! AATGCTATATGGTTGGTCCC+TGG + Chr6:56686096-56686115 MsG0680033099.01.T01:intron 45.0%
! CAGACACTGACCTTATTTGG+AGG - Chr6:56684012-56684031 None:intergenic 45.0%
! CAGCAAGGATCTGTATTGGT+TGG + Chr6:56683892-56683911 MsG0680033099.01.T01:CDS 45.0%
! CGTTGTGCTATTCAGACACA+CGG - Chr6:56688974-56688993 None:intergenic 45.0%
! GTTGATGAGGACAAGGGAAA+AGG + Chr6:56684168-56684187 MsG0680033099.01.T01:CDS 45.0%
! TGACTTACACCTGGTGTCAA+CGG + Chr6:56688192-56688211 MsG0680033099.01.T01:intron 45.0%
! TGACTTACACCTGGTGTCAA+CGG - Chr6:56688211-56688192 None:intergenic 45.0%
!! AGAGGCGTTCTAAAAGGCTT+GGG + Chr6:56689600-56689619 MsG0680033099.01.T01:CDS 45.0%
!! AGTTCTGGGAACCCTAAAAC+AGG + Chr6:56685280-56685299 MsG0680033099.01.T01:CDS 45.0%
!! CGAAAGGTTGATGAGGACAA+GGG + Chr6:56684162-56684181 MsG0680033099.01.T01:intron 45.0%
!! GAGTATTGACAGGGAAGAGT+TGG + Chr6:56686690-56686709 MsG0680033099.01.T01:CDS 45.0%
!! GCAAGGATCTGTATTGGTTG+GGG + Chr6:56683894-56683913 MsG0680033099.01.T01:CDS 45.0%
!! GTCAGAGAGTACCTGAATCA+AGG - Chr6:56690493-56690512 None:intergenic 45.0%
!!! ACTTTTTTTTGGTGGTGGCC+GGG - Chr6:56685802-56685821 None:intergenic 45.0%
!!! AAATTTAAAATTATTGAATA+AGG - Chr6:56686451-56686470 None:intergenic 5.0%
AAGGCTTGGGACTGCATTGA+AGG + Chr6:56689613-56689632 MsG0680033099.01.T01:CDS 50.0%
ACCTCTGCTTCCCTTGATTC+AGG + Chr6:56690479-56690498 MsG0680033099.01.T01:intron 50.0%
ACCTGAATCAAGGGAAGCAG+AGG - Chr6:56690483-56690502 None:intergenic 50.0%
AGAAAAGGGGCAAGGTTGGA+GGG - Chr6:56690638-56690657 None:intergenic 50.0%
CAAATTCCTATGCCGCCTCA+AGG + Chr6:56686417-56686436 MsG0680033099.01.T01:intron 50.0%
GACTGAGCAGGGATATCTCA+AGG + Chr6:56684382-56684401 MsG0680033099.01.T01:intron 50.0%
TAGAAAAGGGGCAAGGTTGG+AGG - Chr6:56690639-56690658 None:intergenic 50.0%
TATCCGAGACCAGTTAGCAG+AGG + Chr6:56688597-56688616 MsG0680033099.01.T01:CDS 50.0%
TGCTCCATGGTTCCTTCTAC+CGG - Chr6:56688045-56688064 None:intergenic 50.0%
! CTCTAGAAAAGGGGCAAGGT+TGG - Chr6:56690642-56690661 None:intergenic 50.0%
! GAGAAATCTACAGATGGCGG+CGG + Chr6:56689482-56689501 MsG0680033099.01.T01:CDS 50.0%
!! AGCAGAGGCACTGTACCAAA+AGG + Chr6:56688612-56688631 MsG0680033099.01.T01:CDS 50.0%
!! CACGTGAGAGGCGTTCTAAA+AGG + Chr6:56689594-56689613 MsG0680033099.01.T01:CDS 50.0%
!! CAGAGGCACTGTACCAAAAG+GGG + Chr6:56688614-56688633 MsG0680033099.01.T01:CDS 50.0%
!! CATGAAGCAGGGTGCTTTTC+TGG - Chr6:56683970-56683989 None:intergenic 50.0%
!! CCGAAAGGTTGATGAGGACA+AGG + Chr6:56684161-56684180 MsG0680033099.01.T01:intron 50.0%
!! CTTCTGCCGAAAGGTTGATG+AGG + Chr6:56684155-56684174 MsG0680033099.01.T01:intron 50.0%
!! GAGAGGCGTTCTAAAAGGCT+TGG + Chr6:56689599-56689618 MsG0680033099.01.T01:CDS 50.0%
!! GCAGAGGCACTGTACCAAAA+GGG + Chr6:56688613-56688632 MsG0680033099.01.T01:CDS 50.0%
!! GGCTGGTTTCTAAGATCCAG+AGG + Chr6:56688377-56688396 MsG0680033099.01.T01:intron 50.0%
!! TGGTGCCGCTTCATCAAAAC+CGG - Chr6:56687780-56687799 None:intergenic 50.0%
!!! AGTTCTGGGGGCTCTACTTT+TGG + Chr6:56686119-56686138 MsG0680033099.01.T01:intron 50.0%
!!! CTTTTTTTTGGTGGTGGCCG+GGG - Chr6:56685801-56685820 None:intergenic 50.0%
AACCACAGGACAGAACAGGC+AGG - Chr6:56684089-56684108 None:intergenic 55.0%
AAGGAAGTGAGGCCTTGAGG+CGG - Chr6:56686432-56686451 None:intergenic 55.0%
AATGACCCTGCGCATGTTGC+AGG - Chr6:56686534-56686553 None:intergenic 55.0%
ACCTCTGCATCGTCGTCTTC+TGG - Chr6:56686742-56686761 None:intergenic 55.0%
AGTCAGGATCCGTTGACACC+AGG + Chr6:56687450-56687469 MsG0680033099.01.T01:intron 55.0%
AGTCAGGATCCGTTGACACC+AGG - Chr6:56687469-56687450 None:intergenic 55.0%
CAACCTGATGGCCCACTGAT+GGG + Chr6:56683612-56683631 MsG0680033099.01.T01:CDS 55.0%
GACACCGGTAGAAGGAACCA+TGG + Chr6:56688038-56688057 MsG0680033099.01.T01:intron 55.0%
GATGGCCCACTGATGGGAAA+TGG + Chr6:56683618-56683637 MsG0680033099.01.T01:CDS 55.0%
GCAAACCTGCAACATGCGCA+GGG + Chr6:56686526-56686545 MsG0680033099.01.T01:intron 55.0%
GGTACAGTGCCTCTGCTAAC+TGG - Chr6:56688609-56688628 None:intergenic 55.0%
TCAACCTGATGGCCCACTGA+TGG + Chr6:56683611-56683630 MsG0680033099.01.T01:CDS 55.0%
TCCAGAAGACGACGATGCAG+AGG + Chr6:56686738-56686757 MsG0680033099.01.T01:CDS 55.0%
TCCTCACGGTAACACGTGAG+AGG + Chr6:56689582-56689601 MsG0680033099.01.T01:CDS 55.0%
TGAGAGACGACACCGGTAGA+AGG + Chr6:56688030-56688049 MsG0680033099.01.T01:intron 55.0%
TGCACGAGGAAAGGATGGAG+AGG - Chr6:56686481-56686500 None:intergenic 55.0%
TTTCCCATCAGTGGGCCATC+AGG - Chr6:56683618-56683637 None:intergenic 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + Chr6:56685781-56685800 MsG0680033099.01.T01:intron 55.0%
! ATGGTTGGTCCCTGGAGTTC+TGG + Chr6:56686104-56686123 MsG0680033099.01.T01:intron 55.0%
! GTGCCTCTGCTAACTGGTCT+CGG - Chr6:56688603-56688622 None:intergenic 55.0%
! TGGTTGGTCCCTGGAGTTCT+GGG + Chr6:56686105-56686124 MsG0680033099.01.T01:intron 55.0%
!! AAACTGCAGGCAGGGGTGTT+TGG - Chr6:56690232-56690251 None:intergenic 55.0%
AGTAGAGCCCCCAGAACTCC+AGG - Chr6:56686117-56686136 None:intergenic 60.0%
CGCAAACCTGCAACATGCGC+AGG + Chr6:56686525-56686544 MsG0680033099.01.T01:intron 60.0%
GACCTGCCTGTTCTGTCCTG+TGG + Chr6:56684084-56684103 MsG0680033099.01.T01:intron 60.0%
GCCTCTCACGTGTTACCGTG+AGG - Chr6:56689586-56689605 None:intergenic 60.0%
GTAGAGCCCCCAGAACTCCA+GGG - Chr6:56686116-56686135 None:intergenic 60.0%
! GGTTGGTCCCTGGAGTTCTG+GGG + Chr6:56686106-56686125 MsG0680033099.01.T01:intron 60.0%
! GTTGGTCCCTGGAGTTCTGG+GGG + Chr6:56686107-56686126 MsG0680033099.01.T01:intron 60.0%
GTACCAAAAGGGGCTCGCGC+TGG + Chr6:56688624-56688643 MsG0680033099.01.T01:CDS 65.0%
GTGAGGCCTTGAGGCGGCAT+AGG - Chr6:56686426-56686445 None:intergenic 65.0%
! CTGCCAGCGCGAGCCCCTTT+TGG - Chr6:56688630-56688649 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 56683489 56690922 56683489 ID=MsG0680033099.01;Name=MsG0680033099.01
Chr6 mRNA 56683489 56690922 56683489 ID=MsG0680033099.01.T01;Parent=MsG0680033099.01;Name=MsG0680033099.01.T01;_AED=0.47;_eAED=0.50;_QI=0|1|0.9|1|1|1|10|263|398
Chr6 exon 56683489 56683670 56683489 ID=MsG0680033099.01.T01:exon:4391;Parent=MsG0680033099.01.T01
Chr6 exon 56683760 56683811 56683760 ID=MsG0680033099.01.T01:exon:4392;Parent=MsG0680033099.01.T01
Chr6 exon 56683886 56684020 56683886 ID=MsG0680033099.01.T01:exon:4393;Parent=MsG0680033099.01.T01
Chr6 exon 56684168 56684239 56684168 ID=MsG0680033099.01.T01:exon:4394;Parent=MsG0680033099.01.T01
Chr6 exon 56685260 56685352 56685260 ID=MsG0680033099.01.T01:exon:4395;Parent=MsG0680033099.01.T01
Chr6 exon 56685877 56685972 56685877 ID=MsG0680033099.01.T01:exon:4396;Parent=MsG0680033099.01.T01
Chr6 exon 56686661 56686759 56686661 ID=MsG0680033099.01.T01:exon:4397;Parent=MsG0680033099.01.T01
Chr6 exon 56688574 56688666 56688574 ID=MsG0680033099.01.T01:exon:4398;Parent=MsG0680033099.01.T01
Chr6 exon 56689419 56689634 56689419 ID=MsG0680033099.01.T01:exon:4399;Parent=MsG0680033099.01.T01
Chr6 exon 56690501 56690922 56690501 ID=MsG0680033099.01.T01:exon:4400;Parent=MsG0680033099.01.T01
Chr6 CDS 56683489 56683670 56683489 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56683760 56683811 56683760 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56683886 56684020 56683886 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56684168 56684239 56684168 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56685260 56685352 56685260 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56685877 56685972 56685877 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56686661 56686759 56686661 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56688574 56688666 56688574 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56689419 56689634 56689419 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 CDS 56690501 56690659 56690501 ID=MsG0680033099.01.T01:cds;Parent=MsG0680033099.01.T01
Chr6 three_prime_UTR 56690660 56690922 56690660 ID=MsG0680033099.01.T01:three_prime_utr;Parent=MsG0680033099.01.T01
Gene Sequence

>MsG0680033099.01.T01

ATGAAGTACTGTAGTTGTCACATAAAGTTATTCTCCAGTTTGAATTCATCCATTAATTTAAACATTTATTACTTATATTTTAAATTTTACTTCCAGGATGTTATTCGATTAAATTTTTTCTCTCAACCTGATGGCCCACTGATGGGAAATGGTTCCTTTAAGTCCTCATTATTGATTCCAGGTATGAAAGAAGGATTATATCTTGGTCCACCACAAAAAGAAAAGCTTCCCAAGAATTCTCAGCAAGGATCTGTATTGGTTGGGGCAATTTCATATGGGAAACTATCATTTTATGATCAGCAGGAGAAAAATAATCCAGAAAAGCACCCTGCTTCATGTCGAATTTCTTATGTAGTTCCTCCAAATAAGGTTGATGAGGACAAGGGAAAAGGTTCTTCCATATCTACCAAAAAGACTGTTTCTGAACGTATAAAAGAAGAGGTAAGAGATGCAAAAATAAAAGTTCTGGGAACCCTAAAACAGGAAAATGATGAAGATCGCTTGGAGTGGAAAGAGCTTGCTGCCTCACTCAAATTAGAATATCCAAAATACACTTCATTGCTTGCGAAGATTTTGGAAGGTTTAGTTTCTAGGAGTAATATCAAAGATAAAATCCATCATGATGAAGAGGTGATTGATGCAGCAAATGATGTGATTGAGAGTATTGACAGGGAAGAGTTGGCAAAATTTTTTGCACTAAAAAATGATCCAGAAGACGACGATGCAGAGAATAACAGGAAAAAGTTTGAGTCTATCCGAGACCAGTTAGCAGAGGCACTGTACCAAAAGGGGCTCGCGCTGGCAGAGATTGAATCCTTAAAGTTGGCAGACTTGACTTGGTGTATATTGTCAAAGGATTTGGATGCAAAAGAAGATGTGGACAGTGAGAAATCTACAGATGGCGGCGGCAGTCATCCAGACTTGTTCGAAGAGAATTTTCTAGAGCTGAAGAAATGGGTTGATGTAAAGTCATCTAAATATGGAATCCTCACGGTAACACGTGAGAGGCGTTCTAAAAGGCTTGGGACTGCATTGAAGGTACTCTCTGACATAATTCAAAATGATGCTGAGCCTGCCAAGAAGAAACTCTATGAGCTAAAGCTCTCATTACTTGATGAGATTGGATGGAAATATTTAACTACATACGAGAGACAGTGGATGCTTGTGCGTTTCCCTCCAACCTTGCCCCTTTTCTAG
Protein sequence

>MsG0680033099.01.T01

MKYCSCHIKLFSSLNSSINLNIYYLYFKFYFQDVIRLNFFSQPDGPLMGNGSFKSSLLIPGMKEGLYLGPPQKEKLPKNSQQGSVLVGAISYGKLSFYDQQEKNNPEKHPASCRISYVVPPNKVDEDKGKGSSISTKKTVSERIKEEVRDAKIKVLGTLKQENDEDRLEWKELAASLKLEYPKYTSLLAKILEGLVSRSNIKDKIHHDEEVIDAANDVIESIDREELAKFFALKNDPEDDDAENNRKKFESIRDQLAEALYQKGLALAEIESLKLADLTWCILSKDLDAKEDVDSEKSTDGGGSHPDLFEENFLELKKWVDVKSSKYGILTVTRERRSKRLGTALKVLSDIIQNDAEPAKKKLYELKLSLLDEIGWKYLTTYERQWMLVRFPPTLPLF*