AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011609.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011609.01.T01 MTR_3g006860 100.000 132 0 0 73 204 399 530 4.62e-90 274
MsG0380011609.01.T01 MTR_3g006860 80.822 73 13 1 1 72 265 337 2.36e-28 111
MsG0380011609.01.T01 MTR_6g463380 94.697 132 7 0 73 204 403 534 5.98e-84 258
MsG0380011609.01.T01 MTR_6g463380 76.712 73 16 1 1 72 269 341 9.02e-26 103
MsG0380011609.01.T01 MTR_6g061650 46.364 220 95 4 1 198 97 315 1.40e-51 169
MsG0380011609.01.T01 MTR_1g014390 45.238 126 41 2 73 195 188 288 4.46e-28 107
MsG0380011609.01.T01 MTR_6g006850 41.667 132 69 2 73 201 181 307 4.40e-26 102
MsG0380011609.01.T01 MTR_6g463380 76.712 73 16 1 1 72 269 341 6.89e-26 103
MsG0380011609.01.T01 MTR_6g463380 90.385 52 5 0 73 124 403 454 4.49e-25 101
MsG0380011609.01.T01 MTR_6g463380 76.712 73 16 1 1 72 269 341 7.37e-26 103
MsG0380011609.01.T01 MTR_6g463380 92.000 50 4 0 73 122 403 452 4.18e-24 99.0
MsG0380011609.01.T01 MTR_1g012015 59.211 76 28 1 123 195 22 97 7.64e-26 96.3
MsG0380011609.01.T01 MTR_7g025575 60.227 88 28 2 123 204 13 99 8.39e-26 96.7
MsG0380011609.01.T01 MTR_1g029560 40.909 132 62 2 73 201 84 202 1.94e-24 95.9
MsG0380011609.01.T01 MTR_6g006710 52.381 84 37 1 121 201 210 293 3.53e-22 91.7
MsG0380011609.01.T01 MTR_6g079410 49.573 117 14 3 123 196 350 464 3.51e-20 87.8
MsG0380011609.01.T01 MTR_6g080120 68.000 50 14 1 123 172 1 48 5.21e-14 64.7
MsG0380011609.01.T01 MTR_6g079950 41.791 67 38 1 135 201 1 66 1.73e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011609.01.T01 AT5G51740 74.436 133 32 2 73 204 311 442 2.85e-64 205
MsG0380011609.01.T01 AT5G51740 74.436 133 32 2 73 204 354 485 7.31e-64 205
MsG0380011609.01.T01 AT5G51740 74.000 50 13 0 73 122 354 403 1.58e-19 85.9

Find 64 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAACAGATCCAGTTAATT+TGG 0.179739 3:-2345351 None:intergenic
GCTGAAGCTGACAGATAATT+TGG 0.192402 3:+2345488 MsG0380011609.01.T01:three_prime_UTR
ATTAGTGCATTGACTGAAAA+TGG 0.263480 3:+2341648 MsG0380011609.01.T01:CDS
ATACTTTCACAAAACAATTA+TGG 0.284685 3:-2345251 None:intergenic
CTGCATGTTTCCAAATTAAC+TGG 0.288993 3:+2345341 MsG0380011609.01.T01:three_prime_UTR
CCCAACTTCTCGTAGACTTT+AGG 0.315746 3:-2345066 None:intergenic
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 3:+2345224 MsG0380011609.01.T01:CDS
TACTGTGTTTGGTGAAGAAA+AGG 0.364696 3:+2341614 MsG0380011609.01.T01:CDS
AAGAAAACGAGCAGAATTAC+TGG 0.372401 3:+2345143 MsG0380011609.01.T01:CDS
AGATGAGATTCTTGATGAAA+TGG 0.388322 3:+2341700 MsG0380011609.01.T01:CDS
CATCCCCTCAGCACTGTGTC+TGG 0.390785 3:-2342281 None:intergenic
GTTGCCTGAGATTCAGAGTA+TGG 0.397325 3:+2345368 MsG0380011609.01.T01:three_prime_UTR
CTATGTCATCACTTCTCTTA+CGG 0.399194 3:+2342374 MsG0380011609.01.T01:CDS
GCTTCAGAAAATACTGTGTT+TGG 0.401820 3:+2341603 MsG0380011609.01.T01:CDS
GACATAGTGTTGACAATATC+AGG 0.403878 3:-2342358 None:intergenic
TTTGAAGAGAGGGTTGAGTA+AGG 0.405119 3:+2341554 MsG0380011609.01.T01:CDS
GGAGGAAAGTTGAAGGGAAT+TGG 0.407630 3:+2341669 MsG0380011609.01.T01:CDS
GATGAGATTCTTGATGAAAT+GGG 0.419939 3:+2341701 MsG0380011609.01.T01:CDS
AGAGAGGGACATGGTGTTGA+AGG 0.426789 3:+2345213 MsG0380011609.01.T01:CDS
TGCATAAGAAGGAATGGATT+AGG 0.430259 3:+2345431 MsG0380011609.01.T01:three_prime_UTR
ACCTAAAGTCTACGAGAAGT+TGG 0.465177 3:+2345065 MsG0380011609.01.T01:CDS
TTGTTGAAGCTTTGAAGAGA+GGG 0.466119 3:+2341544 MsG0380011609.01.T01:CDS
ACTGTGTTTGGTGAAGAAAA+GGG 0.472337 3:+2341615 MsG0380011609.01.T01:CDS
ATCTAAAAGCTTAGAATCGC+CGG 0.472748 3:-2345097 None:intergenic
TGAATTTAATTACTATGCAC+TGG 0.475022 3:+2345526 MsG0380011609.01.T01:three_prime_UTR
AGAATTACTGGCTCAAGCTC+AGG 0.477979 3:+2345155 MsG0380011609.01.T01:CDS
TGAAAATGGAGGAAAGTTGA+AGG 0.484304 3:+2341662 MsG0380011609.01.T01:CDS
AGTTGAAGGGAATTGGCATC+TGG 0.502700 3:+2341676 MsG0380011609.01.T01:CDS
GCTACCATACTCTGAATCTC+AGG 0.503263 3:-2345372 None:intergenic
AATGATTACCTTCTGGAGAA+AGG 0.507195 3:-2342400 None:intergenic
CTTCTATTAGTTGCATCCGC+TGG 0.508982 3:+2345024 MsG0380011609.01.T01:CDS
CCTAAAGTCTACGAGAAGTT+GGG 0.509175 3:+2345066 MsG0380011609.01.T01:CDS
ATCAAGTGCATAAGAAGGAA+TGG 0.516143 3:+2345425 MsG0380011609.01.T01:three_prime_UTR
AGGGGATGACAAAGAATATG+TGG 0.517207 3:+2342296 MsG0380011609.01.T01:CDS
GGGTTCAGAAGAGTAGGAAA+AGG 0.519121 3:+2341721 MsG0380011609.01.T01:CDS
TACGGCTTCCTTTCTCCAGA+AGG 0.521905 3:+2342392 MsG0380011609.01.T01:CDS
ACATTCCTCCTACATTGTGT+TGG 0.531709 3:+2345315 MsG0380011609.01.T01:three_prime_UTR
TGAAATGGGTTCAGAAGAGT+AGG 0.534228 3:+2341715 MsG0380011609.01.T01:CDS
ATTGTTGAAGCTTTGAAGAG+AGG 0.546244 3:+2341543 MsG0380011609.01.T01:CDS
TAATCATCAAGTGCATAAGA+AGG 0.556812 3:+2345420 MsG0380011609.01.T01:three_prime_UTR
ATGCAAGTGAATACATTGCA+TGG 0.557432 3:+2345461 MsG0380011609.01.T01:three_prime_UTR
GAAATTGAAGCTGATTACAT+TGG 0.569179 3:+2345000 MsG0380011609.01.T01:CDS
GTGGCCAGACACAGTGCTGA+GGG 0.570445 3:+2342277 MsG0380011609.01.T01:CDS
GGTTGAGTAAGGAGAATGTG+TGG 0.571308 3:+2341565 MsG0380011609.01.T01:CDS
CTGTGTTTGGTGAAGAAAAG+GGG 0.574536 3:+2341616 MsG0380011609.01.T01:CDS
ACTGGCTCAAGCTCAGGTGA+TGG 0.577941 3:+2345161 MsG0380011609.01.T01:CDS
GGTTCAGAAGAGTAGGAAAA+GGG 0.587677 3:+2341722 MsG0380011609.01.T01:CDS
TATATATAAGAATGTAAGAG+AGG 0.607516 3:+2345197 MsG0380011609.01.T01:CDS
GAAAATGGAGGAAAGTTGAA+GGG 0.613374 3:+2341663 MsG0380011609.01.T01:CDS
TGCAGTCTCCAACACAATGT+AGG 0.617449 3:-2345323 None:intergenic
ATATATAAGAATGTAAGAGA+GGG 0.623612 3:+2345198 MsG0380011609.01.T01:CDS
CGCTGGCTATGATCCACGTG+TGG 0.635218 3:+2345041 MsG0380011609.01.T01:CDS
TGAGTAACAGATTTCAAGAG+TGG 0.635340 3:-2345394 None:intergenic
AGTCTCCAACACAATGTAGG+AGG 0.642906 3:-2345320 None:intergenic
GGGGATGACAAAGAATATGT+GGG 0.650366 3:+2342297 MsG0380011609.01.T01:CDS
ATAAGAAGGAATGGATTAGG+TGG 0.654021 3:+2345434 MsG0380011609.01.T01:three_prime_UTR
GTTTGGTGAAGAAAAGGGGA+AGG 0.654958 3:+2341620 MsG0380011609.01.T01:CDS
TGTGGCCAGACACAGTGCTG+AGG 0.662397 3:+2342276 MsG0380011609.01.T01:CDS
TAATTAGGTTGGACATGCTG+TGG 0.665392 3:+2342258 MsG0380011609.01.T01:intron
TAGACTTTAGGTGCCACACG+TGG 0.678929 3:-2345054 None:intergenic
AGTGCATTGACTGAAAATGG+AGG 0.681869 3:+2341651 MsG0380011609.01.T01:CDS
CACACGTGGATCATAGCCAG+CGG 0.708062 3:-2345040 None:intergenic
AAGAATGTAAGAGAGGGACA+TGG 0.709319 3:+2345204 MsG0380011609.01.T01:CDS
TGGCCAGACACAGTGCTGAG+GGG 0.712731 3:+2342278 MsG0380011609.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTACAAATTTAAAAT+TGG - Chr3:2344565-2344584 None:intergenic 10.0%
!!! AATTTTGATTTATCATATAT+TGG + Chr3:2344093-2344112 MsG0380011609.01.T01:intron 10.0%
!! AAGTGAAAAAAATGAAATTA+GGG + Chr3:2342551-2342570 MsG0380011609.01.T01:intron 15.0%
!! TAAAAAATGTGGAAAAAATT+GGG - Chr3:2344974-2344993 None:intergenic 15.0%
!! TTAAAAAATGTGGAAAAAAT+TGG - Chr3:2344975-2344994 None:intergenic 15.0%
!!! AAAGTATTTTGAAAAAGTTA+AGG + Chr3:2345267-2345286 MsG0380011609.01.T01:three_prime_UTR 15.0%
!!! AATACATGATAAGTTTTTTA+TGG - Chr3:2344175-2344194 None:intergenic 15.0%
!!! AATTTTTTCCACATTTTTTA+AGG + Chr3:2344974-2344993 MsG0380011609.01.T01:intron 15.0%
!!! ATAAATTTTACTTGAATTAG+TGG + Chr3:2342583-2342602 MsG0380011609.01.T01:intron 15.0%
!!! ATTTAGTTTTGTTTATACTT+GGG - Chr3:2344869-2344888 None:intergenic 15.0%
!! AGAACAATACAAAAATTCAA+TGG - Chr3:2342446-2342465 None:intergenic 20.0%
!! AGACTGTTAAAGATATATTA+TGG + Chr3:2342004-2342023 MsG0380011609.01.T01:intron 20.0%
!! ATAATTTACAAAAAACATGC+AGG - Chr3:2343820-2343839 None:intergenic 20.0%
!! ATACTTTCACAAAACAATTA+TGG - Chr3:2345254-2345273 None:intergenic 20.0%
!! ATATATAAGAATGTAAGAGA+GGG + Chr3:2345198-2345217 MsG0380011609.01.T01:CDS 20.0%
!! ATATATTATCTCTTAAAGTG+TGG - Chr3:2343134-2343153 None:intergenic 20.0%
!! ATGGTATTCTTGTATAAATT+AGG - Chr3:2344036-2344055 None:intergenic 20.0%
!! GAAGTGAAAAAAATGAAATT+AGG + Chr3:2342550-2342569 MsG0380011609.01.T01:intron 20.0%
!! TAAGAAGAAACTTCATTTAT+AGG + Chr3:2343781-2343800 MsG0380011609.01.T01:intron 20.0%
!! TATATATAAGAATGTAAGAG+AGG + Chr3:2345197-2345216 MsG0380011609.01.T01:CDS 20.0%
!! TATGAATACTTAAATGTTCT+TGG + Chr3:2344461-2344480 MsG0380011609.01.T01:intron 20.0%
!!! ATTTTAACTATACACAAATG+TGG + Chr3:2344892-2344911 MsG0380011609.01.T01:intron 20.0%
!!! CATTTAGTTTTGTTTATACT+TGG - Chr3:2344870-2344889 None:intergenic 20.0%
!!! TAAGATGCTATTGATTAAAA+TGG + Chr3:2343216-2343235 MsG0380011609.01.T01:intron 20.0%
!!! TTTGATTCGTTTAACTTATT+AGG + Chr3:2341933-2341952 MsG0380011609.01.T01:intron 20.0%
! AAATGAAGTTTCTTCTTAGA+GGG - Chr3:2343779-2343798 None:intergenic 25.0%
! AAATTGCAATTCGTATTTAG+AGG - Chr3:2344078-2344097 None:intergenic 25.0%
! AATATGATGTAATTGTGAGT+AGG - Chr3:2344264-2344283 None:intergenic 25.0%
! AGAGATTAAAAGAAAACCTT+TGG - Chr3:2344689-2344708 None:intergenic 25.0%
! ATGATAAAACCTTTCATGTA+AGG + Chr3:2344316-2344335 MsG0380011609.01.T01:intron 25.0%
! ATTCGCCAAAAGAAAAAAAA+AGG + Chr3:2342934-2342953 MsG0380011609.01.T01:intron 25.0%
! ATTTCCATCCTTAAAAAATG+TGG - Chr3:2344985-2345004 None:intergenic 25.0%
! CATATGCAAATGAATTACAT+TGG - Chr3:2344445-2344464 None:intergenic 25.0%
! CTTATTTCAGTAGAAAAACT+TGG - Chr3:2343601-2343620 None:intergenic 25.0%
! TAAATGAAGTTTCTTCTTAG+AGG - Chr3:2343780-2343799 None:intergenic 25.0%
! TCATTATGTGATCTTTCATA+AGG + Chr3:2343285-2343304 MsG0380011609.01.T01:intron 25.0%
! TGAATTTAATTACTATGCAC+TGG + Chr3:2345526-2345545 MsG0380011609.01.T01:three_prime_UTR 25.0%
!! TTAAATCTTCTGTTTCTTGT+TGG + Chr3:2344650-2344669 MsG0380011609.01.T01:intron 25.0%
!! TTTAACTTATTAGGCTTGTT+TGG + Chr3:2341942-2341961 MsG0380011609.01.T01:intron 25.0%
!! TTTTGCAGTTTAACATGTTT+AGG + Chr3:2342205-2342224 MsG0380011609.01.T01:intron 25.0%
!!! ATGATAAGTTTTTTATGGAG+AGG - Chr3:2344170-2344189 None:intergenic 25.0%
!!! TGATAAGTTTTTTATGGAGA+GGG - Chr3:2344169-2344188 None:intergenic 25.0%
!!! TTAAGCTATTTTTGCAAACA+AGG + Chr3:2342177-2342196 MsG0380011609.01.T01:intron 25.0%
!!! TTGGTCATGGTATTTTTTTA+TGG - Chr3:2344055-2344074 None:intergenic 25.0%
!!! TTGTGTTTGATTTTGTCTTA+TGG - Chr3:2342729-2342748 None:intergenic 25.0%
!!! TTTTCCACATTTTTTAAGGA+TGG + Chr3:2344978-2344997 MsG0380011609.01.T01:intron 25.0%
AGATGAGATTCTTGATGAAA+TGG + Chr3:2341700-2341719 MsG0380011609.01.T01:CDS 30.0%
ATTTGAATGTAGTATGAGCA+TGG + Chr3:2342759-2342778 MsG0380011609.01.T01:intron 30.0%
CAATGGTTATAAAGAGACAA+CGG - Chr3:2342429-2342448 None:intergenic 30.0%
GAAATTGAAGCTGATTACAT+TGG + Chr3:2345000-2345019 MsG0380011609.01.T01:CDS 30.0%
GACTCATTTCATTGATACAT+AGG + Chr3:2342478-2342497 MsG0380011609.01.T01:intron 30.0%
GATGAGATTCTTGATGAAAT+GGG + Chr3:2341701-2341720 MsG0380011609.01.T01:CDS 30.0%
GCTACATGACTAAACATATA+GGG - Chr3:2342665-2342684 None:intergenic 30.0%
TAATCATCAAGTGCATAAGA+AGG + Chr3:2345420-2345439 MsG0380011609.01.T01:three_prime_UTR 30.0%
TAATTGTGAGTAGGCAATTA+TGG - Chr3:2344255-2344274 None:intergenic 30.0%
TCTATAATATCCTAGAGAGT+AGG - Chr3:2344498-2344517 None:intergenic 30.0%
TGAAATTGGTTGAATCACAA+TGG + Chr3:2343191-2343210 MsG0380011609.01.T01:intron 30.0%
TGACAAAAGTAGCTATAAGT+AGG + Chr3:2343057-2343076 MsG0380011609.01.T01:intron 30.0%
TGAGTAACAAGAAACAATCA+TGG - Chr3:2343695-2343714 None:intergenic 30.0%
TGCTACATGACTAAACATAT+AGG - Chr3:2342666-2342685 None:intergenic 30.0%
TTTGTTAGACAGGTTAGAAT+AGG + Chr3:2342506-2342525 MsG0380011609.01.T01:intron 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG + Chr3:2342496-2342515 MsG0380011609.01.T01:intron 30.0%
! CTGCTCATATGTACATTTTT+GGG + Chr3:2343950-2343969 MsG0380011609.01.T01:intron 30.0%
! GAAAAAAAAAGGTCGCATTT+TGG + Chr3:2342945-2342964 MsG0380011609.01.T01:intron 30.0%
! GAATTTGTTCCTTACATGAA+AGG - Chr3:2344328-2344347 None:intergenic 30.0%
! TCTGCTCATATGTACATTTT+TGG + Chr3:2343949-2343968 MsG0380011609.01.T01:intron 30.0%
!! ACATTTGGATGGATTGAATT+GGG + Chr3:2341775-2341794 MsG0380011609.01.T01:intron 30.0%
!! ATTAGTGCATTGACTGAAAA+TGG + Chr3:2341648-2341667 MsG0380011609.01.T01:CDS 30.0%
!! TCAGTGTAATGGATTAAAGA+TGG - Chr3:2343897-2343916 None:intergenic 30.0%
!!! GCTTCATTTTAACTTCTTTG+TGG + Chr3:2344728-2344747 MsG0380011609.01.T01:intron 30.0%
!!! TACTTATAGCTACTTTTGTC+AGG - Chr3:2343058-2343077 None:intergenic 30.0%
!!! TCATATGTACATTTTTGGGT+TGG + Chr3:2343954-2343973 MsG0380011609.01.T01:intron 30.0%
!!! TCATGTAGCAATGTTGTTTT+AGG + Chr3:2342676-2342695 MsG0380011609.01.T01:intron 30.0%
!!! TCTCTTAAAGTGTGGTTTTT+TGG - Chr3:2343126-2343145 None:intergenic 30.0%
!!! TGCGACCTTTTTTTTTCTTT+TGG - Chr3:2342942-2342961 None:intergenic 30.0%
AACATTTCTCTTTCAGCACT+TGG + Chr3:2343983-2344002 MsG0380011609.01.T01:intron 35.0%
AAGAAAACGAGCAGAATTAC+TGG + Chr3:2345143-2345162 MsG0380011609.01.T01:CDS 35.0%
ACTTAAGCCCTATATGGTAT+AGG + Chr3:2342134-2342153 MsG0380011609.01.T01:intron 35.0%
ACTTGAATTAGTGGAACTAG+AGG + Chr3:2342592-2342611 MsG0380011609.01.T01:intron 35.0%
AGCAACTATTATTGGACATG+AGG + Chr3:2341904-2341923 MsG0380011609.01.T01:intron 35.0%
AGCATAAGCCTATACCATAT+AGG - Chr3:2342145-2342164 None:intergenic 35.0%
AGCGTGAGGCAAAATAATAA+AGG - Chr3:2342971-2342990 None:intergenic 35.0%
ATCAAGTGCATAAGAAGGAA+TGG + Chr3:2345425-2345444 MsG0380011609.01.T01:three_prime_UTR 35.0%
ATCTAAAAGCTTAGAATCGC+CGG - Chr3:2345100-2345119 None:intergenic 35.0%
ATGCAAGTGAATACATTGCA+TGG + Chr3:2345461-2345480 MsG0380011609.01.T01:three_prime_UTR 35.0%
CATGTAAGGAACAAATTCTG+TGG + Chr3:2344330-2344349 MsG0380011609.01.T01:intron 35.0%
CATGTGTCTCAGCTTAAAAA+GGG - Chr3:2343742-2343761 None:intergenic 35.0%
CTATGTCATCACTTCTCTTA+CGG + Chr3:2342374-2342393 MsG0380011609.01.T01:CDS 35.0%
CTGCATGTTTCCAAATTAAC+TGG + Chr3:2345341-2345360 MsG0380011609.01.T01:three_prime_UTR 35.0%
GAAAATGGAGGAAAGTTGAA+GGG + Chr3:2341663-2341682 MsG0380011609.01.T01:CDS 35.0%
GAAGACTGATCGATAAAACA+GGG + Chr3:2343259-2343278 MsG0380011609.01.T01:intron 35.0%
GAGAAGTTGGGAAAAATATC+CGG + Chr3:2345078-2345097 MsG0380011609.01.T01:CDS 35.0%
GCAGAGATAGCAACTATTAT+TGG + Chr3:2341896-2341915 MsG0380011609.01.T01:intron 35.0%
GCATAAGCCTATACCATATA+GGG - Chr3:2342144-2342163 None:intergenic 35.0%
GCTTATACTTAAGCCCTATA+TGG + Chr3:2342128-2342147 MsG0380011609.01.T01:intron 35.0%
GCTTCAGAAAATACTGTGTT+TGG + Chr3:2341603-2341622 MsG0380011609.01.T01:CDS 35.0%
GCTTTCAAAGTTGAAGTGTA+CGG + Chr3:2343168-2343187 MsG0380011609.01.T01:intron 35.0%
GGATTAAAGATGGAAAACCA+TGG - Chr3:2343887-2343906 None:intergenic 35.0%
GTATGTTAGCGTAGTTTCAA+TGG + Chr3:2344529-2344548 MsG0380011609.01.T01:intron 35.0%
GTCGAAATCGTAAATTGTTG+TGG + Chr3:2343530-2343549 MsG0380011609.01.T01:intron 35.0%
TACAAAAAACATGCAGGCAT+GGG - Chr3:2343814-2343833 None:intergenic 35.0%
TACACAAATGTGGTGAATGA+TGG + Chr3:2344902-2344921 MsG0380011609.01.T01:intron 35.0%
TACTGCAGAATTTATGCATC+AGG - Chr3:2344221-2344240 None:intergenic 35.0%
TAGTTCCTTGCTTAGTAGTA+AGG + Chr3:2344289-2344308 MsG0380011609.01.T01:intron 35.0%
TATACGCTGTTGCCTAATAT+CGG + Chr3:2343837-2343856 MsG0380011609.01.T01:intron 35.0%
TGAAAATGGAGGAAAGTTGA+AGG + Chr3:2341662-2341681 MsG0380011609.01.T01:CDS 35.0%
TGAAGACTGATCGATAAAAC+AGG + Chr3:2343258-2343277 MsG0380011609.01.T01:intron 35.0%
TGAGTAACAGATTTCAAGAG+TGG - Chr3:2345397-2345416 None:intergenic 35.0%
TGATACCTTACTACTAAGCA+AGG - Chr3:2344297-2344316 None:intergenic 35.0%
TGCAATTCGTATTTAGAGGT+TGG - Chr3:2344074-2344093 None:intergenic 35.0%
TGGGAAGATAGTTGTGTTTA+CGG + Chr3:2341847-2341866 MsG0380011609.01.T01:intron 35.0%
TGTGGATCGTAACATAGATT+TGG + Chr3:2343548-2343567 MsG0380011609.01.T01:intron 35.0%
TTACAAAAAACATGCAGGCA+TGG - Chr3:2343815-2343834 None:intergenic 35.0%
! AACCAAGTTGAGTCTGATTT+CGG + Chr3:2344588-2344607 MsG0380011609.01.T01:intron 35.0%
! AATGATTACCTTCTGGAGAA+AGG - Chr3:2342403-2342422 None:intergenic 35.0%
! ACTGTGTTTGGTGAAGAAAA+GGG + Chr3:2341615-2341634 MsG0380011609.01.T01:CDS 35.0%
! AGTGCTGAAAGAGAAATGTT+CGG - Chr3:2343983-2344002 None:intergenic 35.0%
! ATTGAATTGGGAGATTTTGG+TGG + Chr3:2341787-2341806 MsG0380011609.01.T01:intron 35.0%
! GGTTGGTTAGATAGTCAAAA+TGG - Chr3:2344780-2344799 None:intergenic 35.0%
! TACTGTGTTTGGTGAAGAAA+AGG + Chr3:2341614-2341633 MsG0380011609.01.T01:CDS 35.0%
! TGCATAAGAAGGAATGGATT+AGG + Chr3:2345431-2345450 MsG0380011609.01.T01:three_prime_UTR 35.0%
! TGGATTGAATTGGGAGATTT+TGG + Chr3:2341784-2341803 MsG0380011609.01.T01:intron 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG + Chr3:2345224-2345243 MsG0380011609.01.T01:CDS 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG - Chr3:2341821-2341840 None:intergenic 35.0%
!! ATAAGAAGGAATGGATTAGG+TGG + Chr3:2345434-2345453 MsG0380011609.01.T01:three_prime_UTR 35.0%
!! ATTGTTGAAGCTTTGAAGAG+AGG + Chr3:2341543-2341562 MsG0380011609.01.T01:CDS 35.0%
!! CACATTTGGATGGATTGAAT+TGG + Chr3:2341774-2341793 MsG0380011609.01.T01:intron 35.0%
!! CTTTTTAAGCTGAGACACAT+GGG + Chr3:2343741-2343760 MsG0380011609.01.T01:intron 35.0%
!! GACATAGTGTTGACAATATC+AGG - Chr3:2342361-2342380 None:intergenic 35.0%
!! GTTTGATTTTGTCTTATGGC+AGG - Chr3:2342725-2342744 None:intergenic 35.0%
!! TTGTTGAAGCTTTGAAGAGA+GGG + Chr3:2341544-2341563 MsG0380011609.01.T01:CDS 35.0%
AAGAAACAATCATGGCTAGC+AGG - Chr3:2343687-2343706 None:intergenic 40.0%
AAGAATGTAAGAGAGGGACA+TGG + Chr3:2345204-2345223 MsG0380011609.01.T01:CDS 40.0%
AAGTCTAACACTTTGCTGCT+TGG + Chr3:2342235-2342254 MsG0380011609.01.T01:intron 40.0%
ACATTCCTCCTACATTGTGT+TGG + Chr3:2345315-2345334 MsG0380011609.01.T01:three_prime_UTR 40.0%
ACCTAAAGTCTACGAGAAGT+TGG + Chr3:2345065-2345084 MsG0380011609.01.T01:CDS 40.0%
AGAAACAATCATGGCTAGCA+GGG - Chr3:2343686-2343705 None:intergenic 40.0%
AGAAAGCCAAAATACTGCCA+TGG - Chr3:2343863-2343882 None:intergenic 40.0%
AGGAAGCAGTGTAACTCAAA+GGG - Chr3:2344201-2344220 None:intergenic 40.0%
AGGGGATGACAAAGAATATG+TGG + Chr3:2342296-2342315 MsG0380011609.01.T01:CDS 40.0%
AGTCATACCAAGTCCATACA+AGG - Chr3:2342890-2342909 None:intergenic 40.0%
CCATCCAAATGTGACGTATT+AGG - Chr3:2341767-2341786 None:intergenic 40.0%
CCATGTGTCTCAGCTTAAAA+AGG - Chr3:2343743-2343762 None:intergenic 40.0%
CCTAAAGTCTACGAGAAGTT+GGG + Chr3:2345066-2345085 MsG0380011609.01.T01:CDS 40.0%
CCTAATACGTCACATTTGGA+TGG + Chr3:2341764-2341783 MsG0380011609.01.T01:intron 40.0%
GCAACCTAATACGTCACATT+TGG + Chr3:2341760-2341779 MsG0380011609.01.T01:intron 40.0%
GCTGAAGCTGACAGATAATT+TGG + Chr3:2345488-2345507 MsG0380011609.01.T01:three_prime_UTR 40.0%
GGCAACAGATCCAGTTAATT+TGG - Chr3:2345354-2345373 None:intergenic 40.0%
GGGAAGATAGTTGTGTTTAC+GGG + Chr3:2341848-2341867 MsG0380011609.01.T01:intron 40.0%
GGGGATGACAAAGAATATGT+GGG + Chr3:2342297-2342316 MsG0380011609.01.T01:CDS 40.0%
GGTTCAGAAGAGTAGGAAAA+GGG + Chr3:2341722-2341741 MsG0380011609.01.T01:CDS 40.0%
GGTTGTTGAAGATGCTACAT+TGG - Chr3:2343580-2343599 None:intergenic 40.0%
GTTGAAGTGTACGGTGAAAT+TGG + Chr3:2343177-2343196 MsG0380011609.01.T01:intron 40.0%
GTTTATGATGCCTACTCTCT+AGG + Chr3:2344485-2344504 MsG0380011609.01.T01:intron 40.0%
TAGCAGGAGATCATAAAGGT+CGG - Chr3:2343642-2343661 None:intergenic 40.0%
TGCTTAAAAGTAGCCATGTC+TGG - Chr3:2344807-2344826 None:intergenic 40.0%
TGCTTGTAGAGTCAGTGTAA+TGG - Chr3:2343908-2343927 None:intergenic 40.0%
TGGTTATAAAGAGACAACGG+AGG - Chr3:2342426-2342445 None:intergenic 40.0%
TTTGAAGAGAGGGTTGAGTA+AGG + Chr3:2341554-2341573 MsG0380011609.01.T01:CDS 40.0%
! CACTTTGCTGCTTGGTAATT+AGG + Chr3:2342243-2342262 MsG0380011609.01.T01:intron 40.0%
! CTGTGTTTGGTGAAGAAAAG+GGG + Chr3:2341616-2341635 MsG0380011609.01.T01:CDS 40.0%
! GTTAATGCCTTTTGCTTACC+TGG + Chr3:2341824-2341843 MsG0380011609.01.T01:intron 40.0%
! TATTTTGCCACTCATCCATC+TGG + Chr3:2345120-2345139 MsG0380011609.01.T01:CDS 40.0%
! TCGTATTTAGAGGTTGGTCA+TGG - Chr3:2344068-2344087 None:intergenic 40.0%
! TGAAATGGGTTCAGAAGAGT+AGG + Chr3:2341715-2341734 MsG0380011609.01.T01:CDS 40.0%
! TTCTGTTTCTTGTTGGACTG+TGG + Chr3:2344657-2344676 MsG0380011609.01.T01:intron 40.0%
! TTGCTGCTTGGTAATTAGGT+TGG + Chr3:2342247-2342266 MsG0380011609.01.T01:intron 40.0%
! TTTTCTTCCAGATGGATGAG+TGG - Chr3:2345130-2345149 None:intergenic 40.0%
!! ACTTGTTTTCTGCACATCCT+CGG + Chr3:2342861-2342880 MsG0380011609.01.T01:intron 40.0%
!! AGTGCATTGACTGAAAATGG+AGG + Chr3:2341651-2341670 MsG0380011609.01.T01:CDS 40.0%
!! CCTTTTTAAGCTGAGACACA+TGG + Chr3:2343740-2343759 MsG0380011609.01.T01:intron 40.0%
!! TAATTAGGTTGGACATGCTG+TGG + Chr3:2342258-2342277 MsG0380011609.01.T01:intron 40.0%
!! TACACTGACTCTACAAGCAA+CGG + Chr3:2343909-2343928 MsG0380011609.01.T01:intron 40.0%
!! TTTGGTGGTGAATGATCCTA+TGG + Chr3:2341802-2341821 MsG0380011609.01.T01:intron 40.0%
!!! AGTATTTTGGCTTTCTGCCA+TGG + Chr3:2343867-2343886 MsG0380011609.01.T01:intron 40.0%
AAAGTAGCCATGTCTGGACA+TGG - Chr3:2344801-2344820 None:intergenic 45.0%
AACACAACTATCTTCCCACC+AGG - Chr3:2341845-2341864 None:intergenic 45.0%
ACGGAGGAATGATTACCTTC+TGG - Chr3:2342410-2342429 None:intergenic 45.0%
ACGTGCTTGGTTATGCCATT+TGG - Chr3:2344143-2344162 None:intergenic 45.0%
AGAAGAGTAGGAAAAGGGTC+AGG + Chr3:2341727-2341746 MsG0380011609.01.T01:intron 45.0%
AGGGACGTCATAAAGATCGA+TGG - Chr3:2343667-2343686 None:intergenic 45.0%
AGTCTCCAACACAATGTAGG+AGG - Chr3:2345323-2345342 None:intergenic 45.0%
AGTTGAAGGGAATTGGCATC+TGG + Chr3:2341676-2341695 MsG0380011609.01.T01:CDS 45.0%
ATACTGCCATGGCCGATATT+AGG - Chr3:2343852-2343871 None:intergenic 45.0%
CAGGAAGCAGTGTAACTCAA+AGG - Chr3:2344202-2344221 None:intergenic 45.0%
CCCAACTTCTCGTAGACTTT+AGG - Chr3:2345069-2345088 None:intergenic 45.0%
CCTAACTCAGCCATACAAAC+CGG - Chr3:2343103-2343122 None:intergenic 45.0%
CTAACTCAGCCATACAAACC+GGG - Chr3:2343102-2343121 None:intergenic 45.0%
CTCCGAAATCAGACTCAACT+TGG - Chr3:2344593-2344612 None:intergenic 45.0%
CTTCTATTAGTTGCATCCGC+TGG + Chr3:2345024-2345043 MsG0380011609.01.T01:CDS 45.0%
GCTACCATACTCTGAATCTC+AGG - Chr3:2345375-2345394 None:intergenic 45.0%
GGAGGAAAGTTGAAGGGAAT+TGG + Chr3:2341669-2341688 MsG0380011609.01.T01:CDS 45.0%
GGGACGTCATAAAGATCGAT+GGG - Chr3:2343666-2343685 None:intergenic 45.0%
GGGTTCAGAAGAGTAGGAAA+AGG + Chr3:2341721-2341740 MsG0380011609.01.T01:CDS 45.0%
GGTTGAGTAAGGAGAATGTG+TGG + Chr3:2341565-2341584 MsG0380011609.01.T01:CDS 45.0%
GTTGCCTGAGATTCAGAGTA+TGG + Chr3:2345368-2345387 MsG0380011609.01.T01:three_prime_UTR 45.0%
TAACCAACCATGTCCAGACA+TGG + Chr3:2344791-2344810 MsG0380011609.01.T01:intron 45.0%
TGCAGAAAACAAGTCTGCTC+TGG - Chr3:2342855-2342874 None:intergenic 45.0%
TGCAGTCTCCAACACAATGT+AGG - Chr3:2345326-2345345 None:intergenic 45.0%
! AATGCCTTTTGCTTACCTGG+TGG + Chr3:2341827-2341846 MsG0380011609.01.T01:intron 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG + Chr3:2341828-2341847 MsG0380011609.01.T01:intron 45.0%
! CGTGCTTGGTTATGCCATTT+GGG - Chr3:2344142-2344161 None:intergenic 45.0%
! GAAGCATTCGTTAGCCCAAA+TGG + Chr3:2344125-2344144 MsG0380011609.01.T01:intron 45.0%
! GTTTGGTGAAGAAAAGGGGA+AGG + Chr3:2341620-2341639 MsG0380011609.01.T01:CDS 45.0%
! TATCGGCCATGGCAGTATTT+TGG + Chr3:2343854-2343873 MsG0380011609.01.T01:intron 45.0%
! TCTGATTTCGGAGCTTTGTG+AGG + Chr3:2344600-2344619 MsG0380011609.01.T01:intron 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG - Chr3:2345138-2345157 None:intergenic 45.0%
!! AGAATTACTGGCTCAAGCTC+AGG + Chr3:2345155-2345174 MsG0380011609.01.T01:CDS 45.0%
!! ATAAAGATCGATGGGCTAGC+AGG - Chr3:2343658-2343677 None:intergenic 45.0%
!! TGGACTGTGGATTAGTCCAA+AGG + Chr3:2344670-2344689 MsG0380011609.01.T01:intron 45.0%
!!! CTCTGGAGTCAACTCGTTTT+GGG - Chr3:2342838-2342857 None:intergenic 45.0%
ACATCCTCGGATGCCTTGTA+TGG + Chr3:2342874-2342893 MsG0380011609.01.T01:intron 50.0%
AGGCCATATTTCACCCAACG+TGG - Chr3:2343038-2343057 None:intergenic 50.0%
CAGGAGATCATAAAGGTCGG+TGG - Chr3:2343639-2343658 None:intergenic 50.0%
CGCTGTGACTTATACTGTCG+AGG - Chr3:2343719-2343738 None:intergenic 50.0%
CTATCCCTTGGCGTGAGAAT+GGG + Chr3:2342999-2343018 MsG0380011609.01.T01:intron 50.0%
CTGTTGCCTAATATCGGCCA+TGG + Chr3:2343843-2343862 MsG0380011609.01.T01:intron 50.0%
CTTCCCACCAGGTAAGCAAA+AGG - Chr3:2341834-2341853 None:intergenic 50.0%
GCCATACAAACCGGGTTGTA+CGG - Chr3:2343094-2343113 None:intergenic 50.0%
GCCATATTTCACCCAACGTG+GGG - Chr3:2343036-2343055 None:intergenic 50.0%
GCTCATATCACCGTACAACC+CGG + Chr3:2343081-2343100 MsG0380011609.01.T01:intron 50.0%
GGCCATATTTCACCCAACGT+GGG - Chr3:2343037-2343056 None:intergenic 50.0%
GTGGTAATAGTCCCCACGTT+GGG + Chr3:2343022-2343041 MsG0380011609.01.T01:intron 50.0%
TACGGCTTCCTTTCTCCAGA+AGG + Chr3:2342392-2342411 MsG0380011609.01.T01:CDS 50.0%
TAGCCATGTCTGGACATGGT+TGG - Chr3:2344797-2344816 None:intergenic 50.0%
TATCCCTTGGCGTGAGAATG+GGG + Chr3:2343000-2343019 MsG0380011609.01.T01:intron 50.0%
TCCCCACGTTGGGTGAAATA+TGG + Chr3:2343032-2343051 MsG0380011609.01.T01:intron 50.0%
TCGGATGCCTTGTATGGACT+TGG + Chr3:2342880-2342899 MsG0380011609.01.T01:intron 50.0%
TCTATCCCTTGGCGTGAGAA+TGG + Chr3:2342998-2343017 MsG0380011609.01.T01:intron 50.0%
! AAGTCCATACAAGGCATCCG+AGG - Chr3:2342881-2342900 None:intergenic 50.0%
! ACCGTACAACCCGGTTTGTA+TGG + Chr3:2343090-2343109 MsG0380011609.01.T01:intron 50.0%
! AGAGAGGGACATGGTGTTGA+AGG + Chr3:2345213-2345232 MsG0380011609.01.T01:CDS 50.0%
! CCGGTTTGTATGGCTGAGTT+AGG + Chr3:2343100-2343119 MsG0380011609.01.T01:intron 50.0%
! CGCTCTAGATGTCTATCCCT+TGG + Chr3:2342987-2343006 MsG0380011609.01.T01:intron 50.0%
! GGATAGACATCTAGAGCGTG+AGG - Chr3:2342985-2343004 None:intergenic 50.0%
! GGGCTAGCAGGAGATCATAA+AGG - Chr3:2343646-2343665 None:intergenic 50.0%
! TAGACTTTAGGTGCCACACG+TGG - Chr3:2345057-2345076 None:intergenic 50.0%
!! CAGTCTCAGAAGTGCTTAGC+AGG - Chr3:2341990-2342009 None:intergenic 50.0%
!! TGGAGTCAACTCGTTTTGGG+AGG - Chr3:2342835-2342854 None:intergenic 50.0%
!!! AACTCGTTTTGGGAGGTCAG+AGG - Chr3:2342828-2342847 None:intergenic 50.0%
!!! GCTCTGGAGTCAACTCGTTT+TGG - Chr3:2342839-2342858 None:intergenic 50.0%
ATGGAGAGGGCTAACGTGCT+TGG - Chr3:2344156-2344175 None:intergenic 55.0%
CACACGTGGATCATAGCCAG+CGG - Chr3:2345043-2345062 None:intergenic 55.0%
GGTGGTAATAGTCCCCACGT+TGG + Chr3:2343021-2343040 MsG0380011609.01.T01:intron 55.0%
TAGGAAAAGGGTCAGGAGCG+TGG + Chr3:2341734-2341753 MsG0380011609.01.T01:intron 55.0%
! ACTGGCTCAAGCTCAGGTGA+TGG + Chr3:2345161-2345180 MsG0380011609.01.T01:CDS 55.0%
! AGGAAAAGGGTCAGGAGCGT+GGG + Chr3:2341735-2341754 MsG0380011609.01.T01:intron 55.0%
! GGAGGTCAGAGGTGTAAACG+CGG - Chr3:2342817-2342836 None:intergenic 55.0%
ACCACCCCATTCTCACGCCA+AGG - Chr3:2343007-2343026 None:intergenic 60.0%
CATCCCCTCAGCACTGTGTC+TGG - Chr3:2342284-2342303 None:intergenic 60.0%
CCACCCCATTCTCACGCCAA+GGG - Chr3:2343006-2343025 None:intergenic 60.0%
TGTGGCCAGACACAGTGCTG+AGG + Chr3:2342276-2342295 MsG0380011609.01.T01:CDS 60.0%
! CGCTGGCTATGATCCACGTG+TGG + Chr3:2345041-2345060 MsG0380011609.01.T01:CDS 60.0%
! GTGGCCAGACACAGTGCTGA+GGG + Chr3:2342277-2342296 MsG0380011609.01.T01:CDS 60.0%
! TGGCCAGACACAGTGCTGAG+GGG + Chr3:2342278-2342297 MsG0380011609.01.T01:CDS 60.0%
CCCTTGGCGTGAGAATGGGG+TGG + Chr3:2343003-2343022 MsG0380011609.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 2341528 2345609 2341528 ID=MsG0380011609.01;Name=MsG0380011609.01
Chr3 mRNA 2341528 2345609 2341528 ID=MsG0380011609.01.T01;Parent=MsG0380011609.01;Name=MsG0380011609.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.66|1|1|1|3|364|204
Chr3 exon 2341528 2341743 2341528 ID=MsG0380011609.01.T01:exon:1472;Parent=MsG0380011609.01.T01
Chr3 exon 2342265 2342413 2342265 ID=MsG0380011609.01.T01:exon:1473;Parent=MsG0380011609.01.T01
Chr3 exon 2344996 2345609 2344996 ID=MsG0380011609.01.T01:exon:1474;Parent=MsG0380011609.01.T01
Chr3 CDS 2341528 2341743 2341528 ID=MsG0380011609.01.T01:cds;Parent=MsG0380011609.01.T01
Chr3 CDS 2342265 2342413 2342265 ID=MsG0380011609.01.T01:cds;Parent=MsG0380011609.01.T01
Chr3 CDS 2344996 2345245 2344996 ID=MsG0380011609.01.T01:cds;Parent=MsG0380011609.01.T01
Chr3 three_prime_UTR 2345246 2345609 2345246 ID=MsG0380011609.01.T01:three_prime_utr;Parent=MsG0380011609.01.T01
Gene Sequence

>MsG0380011609.01.T01

ATGATAGCGAATGATATTGTTGAAGCTTTGAAGAGAGGGTTGAGTAAGGAGAATGTGTGGAGTGATATAGATTATGCTTCAGAAAATACTGTGTTTGGTGAAGAAAAGGGGAAGGAGACAATTAGTGCATTGACTGAAAATGGAGGAAAGTTGAAGGGAATTGGCATCTGGAAGATGAGATTCTTGATGAAATGGGTTCAGAAGAGTAGGAAAAGGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGGGGATGACAAAGAATATGTGGGTTTTAATTCTAAACTTCATACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCACTTCTCTTACGGCTTCCTTTCTCCAGAAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCTGGCTATGATCCACGTGTGGCACCTAAAGTCTACGAGAAGTTGGGAAAAATATCCGGCGATTCTAAGCTTTTAGATTATTTTGCCACTCATCCATCTGGAAGAAAACGAGCAGAATTACTGGCTCAAGCTCAGGTGATGGATGAAGCTCTTACTATATATAAGAATGTAAGAGAGGGACATGGTGTTGAAGGATTTCTTTAG

Protein sequence

>MsG0380011609.01.T01

MIANDIVEALKRGLSKENVWSDIDYASENTVFGEEKGKETISALTENGGKLKGIGIWKMRFLMKWVQKSRKRVGHAVARHSAEGMTKNMWVLILNFILYQFVTPDIVNTMSSLLLRLPFSRRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISGDSKLLDYFATHPSGRKRAELLAQAQVMDEALTIYKNVREGHGVEGFL*