AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034619.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034619.01.T01 MTR_6g471010 92.105 342 5 1 1 342 1 320 0.0 647
MsG0680034619.01.T01 MTR_6g027590 90.058 342 12 1 1 342 1 320 0.0 636
MsG0680034619.01.T01 MTR_5g020810 33.237 346 190 6 2 342 413 722 3.42e-60 206
MsG0680034619.01.T01 MTR_3g118160 30.240 334 203 7 2 331 421 728 2.30e-39 149
MsG0680034619.01.T01 MTR_3g088120 28.179 291 166 5 2 278 33 294 2.53e-33 125
MsG0680034619.01.T01 MTR_3g088120 28.618 304 169 7 2 287 33 306 3.23e-33 126
MsG0680034619.01.T01 MTR_3g088380 32.218 239 125 4 3 234 11 219 3.35e-33 126
MsG0680034619.01.T01 MTR_4g102860 30.556 216 118 4 3 217 17 201 1.37e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034619.01.T01 AT5G27740 77.778 342 54 1 1 342 1 320 0.0 565
MsG0680034619.01.T01 AT1G21690 33.333 234 119 4 3 229 11 214 4.83e-33 125
MsG0680034619.01.T01 AT1G21690 33.333 234 119 4 3 229 11 214 6.83e-33 125
MsG0680034619.01.T01 AT1G21690 32.051 234 115 4 3 229 11 207 2.62e-30 118
MsG0680034619.01.T01 AT1G21690 33.333 234 107 6 3 229 11 202 1.43e-29 116
MsG0680034619.01.T01 AT1G77470 27.347 245 148 3 3 247 41 255 2.57e-29 116
MsG0680034619.01.T01 AT1G63160 27.126 247 146 6 3 248 17 230 7.02e-23 98.2

Find 71 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6:-91349638 MsG0680034619.01.T01:CDS
CATAACACTGTCGAGGGTTT+TGG 0.212335 6:+91351157 None:intergenic
AGAAATCAAATCGGAATTTA+AGG 0.217343 6:-91347820 MsG0680034619.01.T01:CDS
TGTCCTCATTTGCTGTTCTA+TGG 0.252413 6:-91350974 MsG0680034619.01.T01:CDS
TGCTCAAAATCTCAAGAAAT+TGG 0.257130 6:-91351120 MsG0680034619.01.T01:intron
TTCAGGTGAAGGTGGAAAAT+AGG 0.275227 6:-91350603 MsG0680034619.01.T01:intron
GTAAGTGCATTATCAAATTA+TGG 0.275313 6:-91347138 MsG0680034619.01.T01:CDS
CGGCACCGGGTCCAAACATT+TGG 0.299333 6:+91350906 None:intergenic
TTTCTTCCCTTTAGTATCAA+TGG 0.323241 6:+91349567 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.324156 6:-91349556 MsG0680034619.01.T01:intron
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6:-91350917 MsG0680034619.01.T01:CDS
GCTGCAACTTCCTTCTAGTT+TGG 0.326964 6:-91347858 MsG0680034619.01.T01:CDS
TGTATCAAAAGCAAACCTTT+TGG 0.341327 6:+91347554 None:intergenic
TTCTTCCCTTTAGTATCAAT+GGG 0.348124 6:+91349568 None:intergenic
TCAGGTGAAGGTGGAAAATA+GGG 0.353576 6:-91350602 MsG0680034619.01.T01:intron
TTATGAGCTATTGAGGAAAC+TGG 0.357086 6:-91347205 MsG0680034619.01.T01:CDS
GCAAGTCTCAAATGACAATA+TGG 0.375769 6:+91347793 None:intergenic
TTGTTCTGCGGAGAGAATGC+TGG 0.394620 6:+91349133 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6:+91349637 None:intergenic
TATACTCCTCCCAGTCCATT+GGG 0.413295 6:+91347615 None:intergenic
GACTTCTTTATGAGCTATTG+AGG 0.419698 6:-91347212 MsG0680034619.01.T01:CDS
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6:-91349602 MsG0680034619.01.T01:CDS
CTAATTACCTGTTCTTCACT+TGG 0.434045 6:+91349006 None:intergenic
CAAAACCCTCGACAGTGTTA+TGG 0.439317 6:-91351156 MsG0680034619.01.T01:CDS
TAATGCACCAAGTGAAGAAC+AGG 0.440498 6:-91349013 MsG0680034619.01.T01:intron
GTTTGGACCCGGTGCCGAAA+AGG 0.441219 6:-91350900 MsG0680034619.01.T01:intron
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6:-91347881 MsG0680034619.01.T01:CDS
TTGCTGTTCTATGGTCCATC+AGG 0.446874 6:-91350965 MsG0680034619.01.T01:CDS
GGAAAATAGGGCTTGGAAAG+TGG 0.454758 6:-91350590 MsG0680034619.01.T01:CDS
ATGCGAGCAGCCAAACTAGA+AGG 0.460248 6:+91347848 None:intergenic
AATTCGCACATTAAGACAAC+GGG 0.461988 6:+91349035 None:intergenic
TTTAGGTTGTTTCAAGTTCG+AGG 0.467965 6:-91347379 MsG0680034619.01.T01:intron
AATAGACCCATTGATACTAA+AGG 0.470695 6:-91349574 MsG0680034619.01.T01:CDS
ATAGACCCATTGATACTAAA+GGG 0.485089 6:-91349573 MsG0680034619.01.T01:CDS
ATGAAGGAACAGAGCCCAAA+AGG 0.486383 6:-91347569 MsG0680034619.01.T01:CDS
ATTGATACTAAAGGGAAGAA+AGG 0.491720 6:-91349565 MsG0680034619.01.T01:CDS
CTCCGCCAAATGTTTGGACC+CGG 0.492853 6:-91350911 MsG0680034619.01.T01:CDS
ATATACTCCTCCCAGTCCAT+TGG 0.499233 6:+91347614 None:intergenic
ATTGTTTGCTTGTCGGTGAA+AGG 0.508946 6:+91347641 None:intergenic
TAAAGAGAGCAAAGATGTTG+TGG 0.510082 6:-91351196 None:intergenic
AAAGAGAGCAAAGATGTTGT+GGG 0.510264 6:-91351195 None:intergenic
GCTGACCAATTGCATTCCTC+CGG 0.512269 6:-91347341 MsG0680034619.01.T01:CDS
TGAAGGTGGAAAATAGGGCT+TGG 0.512888 6:-91350597 MsG0680034619.01.T01:CDS
AGGCAAGAAAACACTAATCA+TGG 0.515883 6:-91350939 MsG0680034619.01.T01:CDS
GATCTCCGGAGGAATGCAAT+TGG 0.520414 6:+91347336 None:intergenic
TTTACCTTCAAAATGATCTC+CGG 0.522303 6:+91347322 None:intergenic
TGAAGCATGAAATCTGCCAT+TGG 0.524375 6:-91347173 MsG0680034619.01.T01:CDS
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6:-91347880 MsG0680034619.01.T01:CDS
TGTTCTGCGGAGAGAATGCT+GGG 0.531450 6:+91349134 None:intergenic
GAAGCATGAAATCTGCCATT+GGG 0.532158 6:-91347172 MsG0680034619.01.T01:CDS
GCACATTAAGACAACGGGAG+CGG 0.533938 6:+91349040 None:intergenic
CACCGGGTCCAAACATTTGG+CGG 0.535929 6:+91350909 None:intergenic
GAAATGACTCCAAGCGATGC+AGG 0.543849 6:-91349646 MsG0680034619.01.T01:CDS
TTCTATGGTCCATCAGGCGC+AGG 0.544328 6:-91350959 MsG0680034619.01.T01:CDS
AATTGCATCTGACATAATGA+AGG 0.551340 6:-91347585 MsG0680034619.01.T01:CDS
GCATTCTCTCCGCAGAACAA+TGG 0.564370 6:-91349130 MsG0680034619.01.T01:CDS
CGCTTGGAGTCATTTCGATG+TGG 0.565712 6:+91349653 None:intergenic
GGACCATAGAACAGCAAATG+AGG 0.571639 6:+91350971 None:intergenic
GCATAGCAGAGAAATCAAAT+CGG 0.583422 6:-91347829 MsG0680034619.01.T01:CDS
AATCAAATCGGAATTTAAGG+AGG 0.587176 6:-91347817 MsG0680034619.01.T01:CDS
TGTATTTCTCCATTGTTCTG+CGG 0.594797 6:+91349121 None:intergenic
GTTGATGTTTCAGGTGAAGG+TGG 0.620590 6:-91350611 MsG0680034619.01.T01:intron
GTGAACCATAACACTGTCGA+GGG 0.625900 6:+91351151 None:intergenic
ACCTTCAAAATGATCTCCGG+AGG 0.628271 6:+91347325 None:intergenic
ATCAAATCGGAATTTAAGGA+GGG 0.630327 6:-91347816 MsG0680034619.01.T01:CDS
TTACATAATATGCTGCCCAA+TGG 0.630713 6:+91347157 None:intergenic
TACTCCTCCCAGTCCATTGG+GGG 0.645004 6:+91347617 None:intergenic
ATACTCCTCCCAGTCCATTG+GGG 0.647707 6:+91347616 None:intergenic
TAATTCGCACATTAAGACAA+CGG 0.648193 6:+91349034 None:intergenic
TGTGAACCATAACACTGTCG+AGG 0.649165 6:+91351150 None:intergenic
GTGGAGCTTACTGTTGGACA+CGG 0.688177 6:+91347771 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTAAATTTTTGTT+TGG - Chr6:91347273-91347292 MsG0680034619.01.T01:intron 10.0%
!!! TATTTTAAGATAATAAAAGA+AGG - Chr6:91348809-91348828 MsG0680034619.01.T01:intron 10.0%
!! AGAAAAAACAAACATTTATT+TGG - Chr6:91348433-91348452 MsG0680034619.01.T01:intron 15.0%
!! ATAATATGCTATTATACTTT+AGG - Chr6:91350908-91350927 MsG0680034619.01.T01:CDS 15.0%
!!! TTTTAAATTTTTGTTTGGAT+CGG - Chr6:91347278-91347297 MsG0680034619.01.T01:intron 15.0%
!! GAAAAAAAATTCCAAAACAT+AGG + Chr6:91349369-91349388 None:intergenic 20.0%
!! GATCATCTTTATTGAATATT+TGG - Chr6:91350370-91350389 MsG0680034619.01.T01:intron 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG - Chr6:91348702-91348721 MsG0680034619.01.T01:intron 20.0%
!! TGTAAGAATAAATAGGAAAA+AGG - Chr6:91348122-91348141 MsG0680034619.01.T01:intron 20.0%
!! TTCAAAACATGAAAACTATA+AGG - Chr6:91349676-91349695 MsG0680034619.01.T01:CDS 20.0%
!!! CATCTAACTAAAATTACTTT+TGG + Chr6:91347534-91347553 None:intergenic 20.0%
!!! CTAGAAAAGCATTTTATAAT+CGG + Chr6:91350162-91350181 None:intergenic 20.0%
!!! TGTTGCAAAGTTTTATTTAA+TGG - Chr6:91347781-91347800 MsG0680034619.01.T01:intron 20.0%
!!! TGTTGTTTGTAAGAATAAAT+AGG - Chr6:91348115-91348134 MsG0680034619.01.T01:intron 20.0%
! AAAACTATAAGGAAACCATA+CGG - Chr6:91349602-91349621 MsG0680034619.01.T01:CDS 25.0%
! AAAATGCAGATTAAGAAACT+TGG - Chr6:91350119-91350138 MsG0680034619.01.T01:intron 25.0%
! AAACATCAAAATTCAAGAAC+TGG - Chr6:91349641-91349660 MsG0680034619.01.T01:CDS 25.0%
! AAGTATAATACGATAGAAAC+AGG + Chr6:91348342-91348361 None:intergenic 25.0%
! AATAAAAGAAGGAATCTTCA+TGG - Chr6:91348820-91348839 MsG0680034619.01.T01:intron 25.0%
! ACTCTTCTCTATCAATATAA+CGG + Chr6:91347909-91347928 None:intergenic 25.0%
! ACTTTGTAAAAACAAATCAG+TGG + Chr6:91347967-91347986 None:intergenic 25.0%
! AGAAATCAAATCGGAATTTA+AGG - Chr6:91350484-91350503 MsG0680034619.01.T01:intron 25.0%
! ATACTTATGACAGTTGAATT+GGG - Chr6:91348356-91348375 MsG0680034619.01.T01:intron 25.0%
! ATTAGCGGTCAATAATAATA+TGG + Chr6:91347874-91347893 None:intergenic 25.0%
! ATTTCATTAAACATTGCTGT+AGG - Chr6:91347999-91348018 MsG0680034619.01.T01:intron 25.0%
! CTCAAATCATGAAAACTATA+AGG - Chr6:91349591-91349610 MsG0680034619.01.T01:CDS 25.0%
! GTAAGTGCATTATCAAATTA+TGG - Chr6:91351166-91351185 MsG0680034619.01.T01:CDS 25.0%
! TATACTTATGACAGTTGAAT+TGG - Chr6:91348355-91348374 MsG0680034619.01.T01:intron 25.0%
! TCAACAAAGACAATTTAGAA+TGG + Chr6:91347678-91347697 None:intergenic 25.0%
! TCTTAACATTTGTATAGGTT+AGG - Chr6:91347810-91347829 MsG0680034619.01.T01:CDS 25.0%
!! AAGAAAAGAGAAGTATGAAA+AGG + Chr6:91347754-91347773 None:intergenic 25.0%
!! GATTGATTCAAATACACAAA+AGG + Chr6:91347233-91347252 None:intergenic 25.0%
!! GTTCTTAAATTCTGATGTTT+TGG + Chr6:91349726-91349745 None:intergenic 25.0%
!!! GTTCTTGAATTTTGATGTTT+TGG + Chr6:91349641-91349660 None:intergenic 25.0%
!!! TCTGAATTTTGAAAGAATGT+TGG - Chr6:91347474-91347493 MsG0680034619.01.T01:intron 25.0%
AAACTATAAGGAAACCATAC+GGG - Chr6:91349603-91349622 MsG0680034619.01.T01:CDS 30.0%
AAAGGGAAGAAAGGATTTAA+AGG - Chr6:91348748-91348767 MsG0680034619.01.T01:intron 30.0%
AACAGATTCCATTATTTCCT+TGG + Chr6:91349345-91349364 None:intergenic 30.0%
AAGGAATCTTACATAGGATT+GGG + Chr6:91349867-91349886 None:intergenic 30.0%
AATAGACCCATTGATACTAA+AGG - Chr6:91348730-91348749 MsG0680034619.01.T01:intron 30.0%
AATATCATTGTCTTGATCCT+TGG - Chr6:91348471-91348490 MsG0680034619.01.T01:intron 30.0%
AATCAAATCGGAATTTAAGG+AGG - Chr6:91350487-91350506 MsG0680034619.01.T01:intron 30.0%
AATTGCATCTGACATAATGA+AGG - Chr6:91350719-91350738 MsG0680034619.01.T01:intron 30.0%
ACATGCTTCCAATTTAATCT+GGG - Chr6:91350554-91350573 MsG0680034619.01.T01:intron 30.0%
AGAAAGGATTTAAAGGTAAC+CGG - Chr6:91348755-91348774 MsG0680034619.01.T01:intron 30.0%
AGCACTCTTAACATTTGTAT+AGG - Chr6:91347805-91347824 MsG0680034619.01.T01:CDS 30.0%
AGTTCATTGGTAAGAAAGAA+GGG - Chr6:91350424-91350443 MsG0680034619.01.T01:intron 30.0%
AGTTGACAAAACAATCAAGT+AGG + Chr6:91350844-91350863 None:intergenic 30.0%
AGTTTAACAACAAAAACAGC+CGG + Chr6:91348777-91348796 None:intergenic 30.0%
ATAGAACAACATTCATCTAC+TGG + Chr6:91349501-91349520 None:intergenic 30.0%
ATAGACCCATTGATACTAAA+GGG - Chr6:91348731-91348750 MsG0680034619.01.T01:intron 30.0%
ATCAAATCGGAATTTAAGGA+GGG - Chr6:91350488-91350507 MsG0680034619.01.T01:intron 30.0%
ATCAACATTCTTAGGAGAAA+TGG + Chr6:91349929-91349948 None:intergenic 30.0%
ATTAAGAAACTTGGAAAGGA+AGG - Chr6:91350128-91350147 MsG0680034619.01.T01:intron 30.0%
ATTGATACTAAAGGGAAGAA+AGG - Chr6:91348739-91348758 MsG0680034619.01.T01:intron 30.0%
ATTGTCTTTGTTGATGTTTC+AGG - Chr6:91347684-91347703 MsG0680034619.01.T01:intron 30.0%
CAATATTAAGCATGTTCTCT+GGG + Chr6:91349841-91349860 None:intergenic 30.0%
GGTTTCAGGAAGAATTATAA+AGG + Chr6:91348260-91348279 None:intergenic 30.0%
TAAGGAATCTTACATAGGAT+TGG + Chr6:91349868-91349887 None:intergenic 30.0%
TAATTCGCACATTAAGACAA+CGG + Chr6:91349273-91349292 None:intergenic 30.0%
TAGATGAATGTTGTTCTATG+AGG - Chr6:91349502-91349521 MsG0680034619.01.T01:intron 30.0%
TATAAGTCCATGCTTCATAA+GGG - Chr6:91349558-91349577 MsG0680034619.01.T01:CDS 30.0%
TCAATATTAAGCATGTTCTC+TGG + Chr6:91349842-91349861 None:intergenic 30.0%
TGAAATAATTCCGAAATGCA+TGG - Chr6:91350046-91350065 MsG0680034619.01.T01:intron 30.0%
TGAATATTTGGAAATCCATG+TGG - Chr6:91350382-91350401 MsG0680034619.01.T01:intron 30.0%
TGACTGTGTATAATGATGTT+TGG - Chr6:91348918-91348937 MsG0680034619.01.T01:intron 30.0%
TGATATTACTTTCTGCGATT+TGG - Chr6:91350198-91350217 MsG0680034619.01.T01:intron 30.0%
TGCTCAAAATCTCAAGAAAT+TGG - Chr6:91347184-91347203 MsG0680034619.01.T01:CDS 30.0%
TGTATAGTGAACTGAATCAT+TGG - Chr6:91348525-91348544 MsG0680034619.01.T01:intron 30.0%
TTAACATCCAACTAATAGAG+TGG + Chr6:91350297-91350316 None:intergenic 30.0%
TTATGCATCCCAGATTAAAT+TGG + Chr6:91350565-91350584 None:intergenic 30.0%
TTCTTCCCTTTAGTATCAAT+GGG + Chr6:91348739-91348758 None:intergenic 30.0%
TTTACCTGTGTAATGCTTTA+AGG - Chr6:91348956-91348975 MsG0680034619.01.T01:intron 30.0%
TTTACCTTCAAAATGATCTC+CGG + Chr6:91350985-91351004 None:intergenic 30.0%
TTTCTTCCCTTTAGTATCAA+TGG + Chr6:91348740-91348759 None:intergenic 30.0%
! AAAATGTAGTGCACTGATAT+TGG + Chr6:91348502-91348521 None:intergenic 30.0%
! AGTAGAATGTCTTGTTAACT+TGG + Chr6:91349805-91349824 None:intergenic 30.0%
! AGTTTTCATGATTTGAGCTT+AGG + Chr6:91349588-91349607 None:intergenic 30.0%
! CCTAAGAATGTTGATTATGA+CGG - Chr6:91349934-91349953 MsG0680034619.01.T01:intron 30.0%
! CTTCTCAAAGCTTTTCTTTA+AGG - Chr6:91350601-91350620 MsG0680034619.01.T01:CDS 30.0%
! GTAGAATGTCTTGTTAACTT+GGG + Chr6:91349804-91349823 None:intergenic 30.0%
! GTATCAAAAGCAAACCTTTT+GGG + Chr6:91350752-91350771 None:intergenic 30.0%
! GTGACAAAAAAAGACCTTTT+CGG + Chr6:91347421-91347440 None:intergenic 30.0%
! GTTGAAGTTTTACAGTTCAT+TGG - Chr6:91350411-91350430 MsG0680034619.01.T01:intron 30.0%
! TGAATCATTGGTGTCTTATT+TGG - Chr6:91348537-91348556 MsG0680034619.01.T01:intron 30.0%
! TGCTTTTCTAGATATACTGA+AGG - Chr6:91350171-91350190 MsG0680034619.01.T01:intron 30.0%
! TGTATCAAAAGCAAACCTTT+TGG + Chr6:91350753-91350772 None:intergenic 30.0%
! TTCTAAGGATTATATCTGCT+TGG - Chr6:91350231-91350250 MsG0680034619.01.T01:intron 30.0%
!! AAGACATTCTACTGACTTAT+TGG - Chr6:91349812-91349831 MsG0680034619.01.T01:intron 30.0%
!!! GTTTGTTTTTTCTGAGTTGA+AGG + Chr6:91348426-91348445 None:intergenic 30.0%
AAGATGTAGAACAAAGACAC+AGG + Chr6:91348233-91348252 None:intergenic 35.0%
AATTCGCACATTAAGACAAC+GGG + Chr6:91349272-91349291 None:intergenic 35.0%
AGAAGTTATTGAGTGGTTGT+TGG - Chr6:91348165-91348184 MsG0680034619.01.T01:intron 35.0%
AGCATTTCCACTCTATTAGT+TGG - Chr6:91350287-91350306 MsG0680034619.01.T01:intron 35.0%
AGGAATCTTACATAGGATTG+GGG + Chr6:91349866-91349885 None:intergenic 35.0%
AGGCAAGAAAACACTAATCA+TGG - Chr6:91347365-91347384 MsG0680034619.01.T01:CDS 35.0%
ATGAATGTTGTTCTATGAGG+TGG - Chr6:91349505-91349524 MsG0680034619.01.T01:intron 35.0%
ATTCTTAGGAGAAATGGTCT+TGG + Chr6:91349923-91349942 None:intergenic 35.0%
CACATGCTTCCAATTTAATC+TGG - Chr6:91350553-91350572 MsG0680034619.01.T01:intron 35.0%
CACTGATATTGGAATTTCCA+AGG + Chr6:91348491-91348510 None:intergenic 35.0%
CAGTTCATTGGTAAGAAAGA+AGG - Chr6:91350423-91350442 MsG0680034619.01.T01:intron 35.0%
CCGTCATAATCAACATTCTT+AGG + Chr6:91349937-91349956 None:intergenic 35.0%
CCTCAATGCTAAAAAACAAG+GGG + Chr6:91349391-91349410 None:intergenic 35.0%
CTAATTACCTGTTCTTCACT+TGG + Chr6:91349301-91349320 None:intergenic 35.0%
GAAGTTATTGAGTGGTTGTT+GGG - Chr6:91348166-91348185 MsG0680034619.01.T01:intron 35.0%
GACTTCTTTATGAGCTATTG+AGG - Chr6:91351092-91351111 MsG0680034619.01.T01:intron 35.0%
GCAAGTCTCAAATGACAATA+TGG + Chr6:91350514-91350533 None:intergenic 35.0%
GCACATAAGGAATCTTACAT+AGG + Chr6:91349873-91349892 None:intergenic 35.0%
GCAGATTAAGAAACTTGGAA+AGG - Chr6:91350124-91350143 MsG0680034619.01.T01:intron 35.0%
GCATAGCAGAGAAATCAAAT+CGG - Chr6:91350475-91350494 MsG0680034619.01.T01:intron 35.0%
GCCTCAATGCTAAAAAACAA+GGG + Chr6:91349392-91349411 None:intergenic 35.0%
GGAAAAAGGCAAGTCATAAT+TGG - Chr6:91348136-91348155 MsG0680034619.01.T01:intron 35.0%
GTATAAGTCCATGCTTCATA+AGG - Chr6:91349557-91349576 MsG0680034619.01.T01:CDS 35.0%
GTGTATAATGATGTTTGGTC+TGG - Chr6:91348923-91348942 MsG0680034619.01.T01:intron 35.0%
GTTGTCTAGAAGTTATTGAG+TGG - Chr6:91348158-91348177 MsG0680034619.01.T01:intron 35.0%
TGACAAAACAATCAAGTAGG+CGG + Chr6:91350841-91350860 None:intergenic 35.0%
TGCCTCAATGCTAAAAAACA+AGG + Chr6:91349393-91349412 None:intergenic 35.0%
TGTAGTGTCCAAGGAAATAA+TGG - Chr6:91349334-91349353 MsG0680034619.01.T01:intron 35.0%
TGTATTTCTCCATTGTTCTG+CGG + Chr6:91349186-91349205 None:intergenic 35.0%
TTACATAATATGCTGCCCAA+TGG + Chr6:91351150-91351169 None:intergenic 35.0%
TTATGAGCTATTGAGGAAAC+TGG - Chr6:91351099-91351118 MsG0680034619.01.T01:intron 35.0%
TTTGCAACTGTTCTGACTAT+AGG - Chr6:91348381-91348400 MsG0680034619.01.T01:intron 35.0%
TTTGGTCAAGTTCTCTTCTA+AGG - Chr6:91350216-91350235 MsG0680034619.01.T01:intron 35.0%
! AATAATGCCCAACATTGACT+TGG + Chr6:91350080-91350099 None:intergenic 35.0%
! ATTGAGGCAATTGTTTTCTC+TGG - Chr6:91349404-91349423 MsG0680034619.01.T01:intron 35.0%
! CAGATTAAATTGGAAGCATG+TGG + Chr6:91350555-91350574 None:intergenic 35.0%
! GGAATCTGTTTCCTATGTTT+TGG - Chr6:91349355-91349374 MsG0680034619.01.T01:intron 35.0%
! TTTGTTGATGTTTCAGGTGA+AGG - Chr6:91347690-91347709 MsG0680034619.01.T01:intron 35.0%
!! GTGGTAAGTTGATATCGATA+AGG + Chr6:91347948-91347967 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+AGG - Chr6:91350925-91350944 MsG0680034619.01.T01:CDS 35.0%
!!! AGTTGAAGGCATTCATTTTG+AGG + Chr6:91348412-91348431 None:intergenic 35.0%
!!! CTGCATTTTTTAGTATGTCC+TGG + Chr6:91350108-91350127 None:intergenic 35.0%
AAACAGGTACCAAACAGTTC+TGG + Chr6:91348326-91348345 None:intergenic 40.0%
AAACATTGCTGTAGGATGAG+AGG - Chr6:91348007-91348026 MsG0680034619.01.T01:intron 40.0%
AACTTCAACAATCTGCCACA+TGG + Chr6:91350400-91350419 None:intergenic 40.0%
AATAAGAAACCTCTCCACCT+TGG - Chr6:91349003-91349022 MsG0680034619.01.T01:intron 40.0%
ACACACAATACGATGGTTTC+AGG + Chr6:91348274-91348293 None:intergenic 40.0%
AGAAACTTGGAAAGGAAGGT+TGG - Chr6:91350132-91350151 MsG0680034619.01.T01:intron 40.0%
AGAACCAAGCTCTCAAATCT+TGG - Chr6:91348195-91348214 MsG0680034619.01.T01:intron 40.0%
AGAATCCACCAAGTCAATGT+TGG - Chr6:91350069-91350088 MsG0680034619.01.T01:intron 40.0%
AGACATTGCTCGCTAACTAA+GGG + Chr6:91347850-91347869 None:intergenic 40.0%
ATTGTTTGCTTGTCGGTGAA+AGG + Chr6:91350666-91350685 None:intergenic 40.0%
CGATAAGGTTTCTCATTCTC+TGG + Chr6:91347933-91347952 None:intergenic 40.0%
CGGAACTGTTTGACAATTAG+CGG + Chr6:91347889-91347908 None:intergenic 40.0%
CGGAATTATTTCAGCCTATG+AGG + Chr6:91350039-91350058 None:intergenic 40.0%
GAAACTTGGAAAGGAAGGTT+GGG - Chr6:91350133-91350152 MsG0680034619.01.T01:intron 40.0%
GAAGCATGAAATCTGCCATT+GGG - Chr6:91351132-91351151 MsG0680034619.01.T01:CDS 40.0%
GAATCCACCAAGTCAATGTT+GGG - Chr6:91350070-91350089 MsG0680034619.01.T01:intron 40.0%
GGAATCTTACATAGGATTGG+GGG + Chr6:91349865-91349884 None:intergenic 40.0%
GGCGGTTATAAAAACTGACA+AGG + Chr6:91350823-91350842 None:intergenic 40.0%
TAATGCACCAAGTGAAGAAC+AGG - Chr6:91349291-91349310 MsG0680034619.01.T01:intron 40.0%
TCAGGTGAAGGTGGAAAATA+GGG - Chr6:91347702-91347721 MsG0680034619.01.T01:intron 40.0%
TCTTCATGGTCAACAAACAG+TGG - Chr6:91348834-91348853 MsG0680034619.01.T01:intron 40.0%
TGAAGCATGAAATCTGCCAT+TGG - Chr6:91351131-91351150 MsG0680034619.01.T01:CDS 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG - Chr6:91347701-91347720 MsG0680034619.01.T01:intron 40.0%
! AAAAAAGACCTTTTCGGCAC+CGG + Chr6:91347415-91347434 None:intergenic 40.0%
! AGAGCCTTAAAGCATTACAC+AGG + Chr6:91348963-91348982 None:intergenic 40.0%
! AGGCAATTGTTTTCTCTGGT+AGG - Chr6:91349408-91349427 MsG0680034619.01.T01:intron 40.0%
! ATAACACTGTCGAGGGTTTT+GGG + Chr6:91347149-91347168 None:intergenic 40.0%
! ATTGCCACAAAAACTGACTC+TGG + Chr6:91348056-91348075 None:intergenic 40.0%
! GAAGTTTTCTGTAGTGTCCA+AGG - Chr6:91349325-91349344 MsG0680034619.01.T01:intron 40.0%
! GAGCTATTTCCAGAACTGTT+TGG - Chr6:91348314-91348333 MsG0680034619.01.T01:intron 40.0%
! GGCAATTGTTTTCTCTGGTA+GGG - Chr6:91349409-91349428 MsG0680034619.01.T01:intron 40.0%
!! AAACTGACTCTGGTCAGTTT+TGG + Chr6:91348046-91348065 None:intergenic 40.0%
!! ACAGCTCATGTGTTACTTGT+AGG - Chr6:91350637-91350656 MsG0680034619.01.T01:intron 40.0%
!! AGTACTTGAGCACTGTTTTC+AGG - Chr6:91348579-91348598 MsG0680034619.01.T01:intron 40.0%
!! ATGGTCTTGGAAGTGCTAAA+AGG + Chr6:91349910-91349929 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+TGG - Chr6:91347330-91347349 MsG0680034619.01.T01:CDS 40.0%
!!! CCCCTTGTTTTTTAGCATTG+AGG - Chr6:91349388-91349407 MsG0680034619.01.T01:intron 40.0%
!!! TTACTTTTGGTGCTCACACA+AGG + Chr6:91347521-91347540 None:intergenic 40.0%
AAACAATTCCCCCAATGGAC+TGG - Chr6:91350679-91350698 MsG0680034619.01.T01:intron 45.0%
AAGCATGTGGAGCTTACTGT+TGG + Chr6:91350542-91350561 None:intergenic 45.0%
AAGTCCATGCTTCATAAGGG+AGG - Chr6:91349561-91349580 MsG0680034619.01.T01:CDS 45.0%
ACCTTCAAAATGATCTCCGG+AGG + Chr6:91350982-91351001 None:intergenic 45.0%
AGAAGGTCTACCCTTGGTTA+GGG + Chr6:91349998-91350017 None:intergenic 45.0%
AGTAATACTGCAAGCCAAGG+TGG + Chr6:91349020-91349039 None:intergenic 45.0%
AGTCCATGCTTCATAAGGGA+GGG - Chr6:91349562-91349581 MsG0680034619.01.T01:CDS 45.0%
ATATACTCCTCCCAGTCCAT+TGG + Chr6:91350693-91350712 None:intergenic 45.0%
ATATCCTCTCTCCCTAACCA+AGG - Chr6:91349984-91350003 MsG0680034619.01.T01:intron 45.0%
ATGAAGGAACAGAGCCCAAA+AGG - Chr6:91350735-91350754 MsG0680034619.01.T01:intron 45.0%
ATTGCTGTAGGATGAGAGGT+AGG - Chr6:91348011-91348030 MsG0680034619.01.T01:intron 45.0%
CAAAACCCTCGACAGTGTTA+TGG - Chr6:91347148-91347167 MsG0680034619.01.T01:CDS 45.0%
CAAGCAAACAATTCCCCCAA+TGG - Chr6:91350674-91350693 MsG0680034619.01.T01:intron 45.0%
CAGACATTGCTCGCTAACTA+AGG + Chr6:91347851-91347870 None:intergenic 45.0%
CCAAGCTCTCAAATCTTGGT+AGG - Chr6:91348199-91348218 MsG0680034619.01.T01:intron 45.0%
CCTACCAAGATTTGAGAGCT+TGG + Chr6:91348202-91348221 None:intergenic 45.0%
GGAAAATAGGGCTTGGAAAG+TGG - Chr6:91347714-91347733 MsG0680034619.01.T01:intron 45.0%
GGACCATAGAACAGCAAATG+AGG + Chr6:91347336-91347355 None:intergenic 45.0%
GGTAGCGAAACAAACTACTC+TGG + Chr6:91349783-91349802 None:intergenic 45.0%
GTGAACCATAACACTGTCGA+GGG + Chr6:91347156-91347175 None:intergenic 45.0%
GTTGGGCATTATTGTTTGCC+AGG - Chr6:91350087-91350106 MsG0680034619.01.T01:intron 45.0%
TAGAAGGTCTACCCTTGGTT+AGG + Chr6:91349999-91350018 None:intergenic 45.0%
TATACTCCTCCCAGTCCATT+GGG + Chr6:91350692-91350711 None:intergenic 45.0%
TATCCTCTCTCCCTAACCAA+GGG - Chr6:91349985-91350004 MsG0680034619.01.T01:intron 45.0%
TGAAGGTGGAAAATAGGGCT+TGG - Chr6:91347707-91347726 MsG0680034619.01.T01:intron 45.0%
TGCAGGAACACACAATACGA+TGG + Chr6:91348281-91348300 None:intergenic 45.0%
TGCAGTAATACTGCAAGCCA+AGG + Chr6:91349023-91349042 None:intergenic 45.0%
TGGGGGAATTGTTTGCTTGT+CGG + Chr6:91350673-91350692 None:intergenic 45.0%
TGTGAACCATAACACTGTCG+AGG + Chr6:91347157-91347176 None:intergenic 45.0%
TGTGTGTTCCTGCACTATTC+TGG - Chr6:91348287-91348306 MsG0680034619.01.T01:intron 45.0%
! AAAAAGACCTTTTCGGCACC+GGG + Chr6:91347414-91347433 None:intergenic 45.0%
! AACAATTCCCCCAATGGACT+GGG - Chr6:91350680-91350699 MsG0680034619.01.T01:intron 45.0%
! CATAACACTGTCGAGGGTTT+TGG + Chr6:91347150-91347169 None:intergenic 45.0%
! CTGACCAGAGTCAGTTTTTG+TGG - Chr6:91348049-91348068 MsG0680034619.01.T01:intron 45.0%
! GCTGCAACTTCCTTCTAGTT+TGG - Chr6:91350446-91350465 MsG0680034619.01.T01:intron 45.0%
! GGTGGATTCTCCATGCATTT+CGG + Chr6:91350059-91350078 None:intergenic 45.0%
! GTTGATGTTTCAGGTGAAGG+TGG - Chr6:91347693-91347712 MsG0680034619.01.T01:intron 45.0%
! TCCTCCGGAGATCATTTTGA+AGG - Chr6:91350978-91350997 MsG0680034619.01.T01:CDS 45.0%
! TTGCTGTTCTATGGTCCATC+AGG - Chr6:91347339-91347358 MsG0680034619.01.T01:CDS 45.0%
!! AATGCCCAACATTGACTTGG+TGG + Chr6:91350077-91350096 None:intergenic 45.0%
!! AGCCTATGAGGCTGATTTGT+GGG + Chr6:91350027-91350046 None:intergenic 45.0%
!! TTGGAAGTGCTAAAAGGTGC+CGG + Chr6:91349904-91349923 None:intergenic 45.0%
ATACTCCTCCCAGTCCATTG+GGG + Chr6:91350691-91350710 None:intergenic 50.0%
ATGCGAGCAGCCAAACTAGA+AGG + Chr6:91350459-91350478 None:intergenic 50.0%
CGCTTGGAGTCATTTCGATG+TGG + Chr6:91348654-91348673 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG - Chr6:91348658-91348677 MsG0680034619.01.T01:intron 50.0%
GATCTCCGGAGGAATGCAAT+TGG + Chr6:91350971-91350990 None:intergenic 50.0%
GCACATTAAGACAACGGGAG+CGG + Chr6:91349267-91349286 None:intergenic 50.0%
GCATTCTCTCCGCAGAACAA+TGG - Chr6:91349174-91349193 MsG0680034619.01.T01:CDS 50.0%
GCTCTTCTCCGCCAAATGTT+TGG - Chr6:91347387-91347406 MsG0680034619.01.T01:intron 50.0%
GCTGACCAATTGCATTCCTC+CGG - Chr6:91350963-91350982 MsG0680034619.01.T01:CDS 50.0%
GGATGAGAGGTAGGCATAGA+AGG - Chr6:91348020-91348039 MsG0680034619.01.T01:intron 50.0%
GGCAATAGCTACTACCCGTA+TGG + Chr6:91349705-91349724 None:intergenic 50.0%
GGCAATAGCTGCTAACCGTA+TGG + Chr6:91349620-91349639 None:intergenic 50.0%
GGTTAGGGAGAGAGGATATC+AGG + Chr6:91349983-91350002 None:intergenic 50.0%
GTGGAGCTTACTGTTGGACA+CGG + Chr6:91350536-91350555 None:intergenic 50.0%
GTGTTCCTGCACTATTCTGG+TGG - Chr6:91348290-91348309 MsG0680034619.01.T01:intron 50.0%
TCCTTATGTGCTTCACCGAC+CGG - Chr6:91349882-91349901 MsG0680034619.01.T01:intron 50.0%
TGTTCTGCGGAGAGAATGCT+GGG + Chr6:91349173-91349192 None:intergenic 50.0%
TTGTTCTGCGGAGAGAATGC+TGG + Chr6:91349174-91349193 None:intergenic 50.0%
! TGGATCGGATGTGTTGTTGC+AGG - Chr6:91347293-91347312 MsG0680034619.01.T01:intron 50.0%
!! AAGTGCTAAAAGGTGCCGGT+CGG + Chr6:91349900-91349919 None:intergenic 50.0%
!! CAGCCTATGAGGCTGATTTG+TGG + Chr6:91350028-91350047 None:intergenic 50.0%
!! CCTATGAGGCTGATTTGTGG+GGG + Chr6:91350025-91350044 None:intergenic 50.0%
!! CTTGAGCACTGTTTTCAGGC+TGG - Chr6:91348583-91348602 MsG0680034619.01.T01:intron 50.0%
!! GCCTATGAGGCTGATTTGTG+GGG + Chr6:91350026-91350045 None:intergenic 50.0%
!! TGATTTGTGGGGGCACTAGA+AGG + Chr6:91350015-91350034 None:intergenic 50.0%
AGGCCCTCCCTTATGAAGCA+TGG + Chr6:91349568-91349587 None:intergenic 55.0%
CACCGGGTCCAAACATTTGG+CGG + Chr6:91347398-91347417 None:intergenic 55.0%
CCCCCACAAATCAGCCTCAT+AGG - Chr6:91350022-91350041 MsG0680034619.01.T01:intron 55.0%
CTACCCTTGGTTAGGGAGAG+AGG + Chr6:91349991-91350010 None:intergenic 55.0%
CTCCGCCAAATGTTTGGACC+CGG - Chr6:91347393-91347412 MsG0680034619.01.T01:intron 55.0%
GCTCACCACCAGAATAGTGC+AGG + Chr6:91348298-91348317 None:intergenic 55.0%
GGCACTAGAAGGTCTACCCT+TGG + Chr6:91350004-91350023 None:intergenic 55.0%
TACTCCTCCCAGTCCATTGG+GGG + Chr6:91350690-91350709 None:intergenic 55.0%
TACTGCAAGCCAAGGTGGAG+AGG + Chr6:91349015-91349034 None:intergenic 55.0%
TCCAAGCGATGCAGGCTTTC+AGG - Chr6:91348666-91348685 MsG0680034619.01.T01:intron 55.0%
TCCTGAAAGCCTGCATCGCT+TGG + Chr6:91348670-91348689 None:intergenic 55.0%
TTCTATGGTCCATCAGGCGC+AGG - Chr6:91347345-91347364 MsG0680034619.01.T01:CDS 55.0%
! GTTTTCTTGCCTGCGCCTGA+TGG + Chr6:91347357-91347376 None:intergenic 55.0%
!! AATTCCCCCAATGGACTGGG+AGG - Chr6:91350683-91350702 MsG0680034619.01.T01:intron 55.0%
GCCGGTCGGTGAAGCACATA+AGG + Chr6:91349886-91349905 None:intergenic 60.0%
! CGGCACCGGGTCCAAACATT+TGG + Chr6:91347401-91347420 None:intergenic 60.0%
! GTTTGGACCCGGTGCCGAAA+AGG - Chr6:91347404-91347423 MsG0680034619.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 91347122 91351204 91347122 ID=MsG0680034619.01;Name=MsG0680034619.01
Chr6 mRNA 91347122 91351204 91347122 ID=MsG0680034619.01.T01;Parent=MsG0680034619.01;Name=MsG0680034619.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.88|0.8|1|0.88|0.9|10|0|354
Chr6 exon 91347122 91347235 91347122 ID=MsG0680034619.01.T01:exon:12651;Parent=MsG0680034619.01.T01
Chr6 exon 91347327 91347396 91347327 ID=MsG0680034619.01.T01:exon:12650;Parent=MsG0680034619.01.T01
Chr6 exon 91347503 91347667 91347503 ID=MsG0680034619.01.T01:exon:12649;Parent=MsG0680034619.01.T01
Chr6 exon 91347782 91347918 91347782 ID=MsG0680034619.01.T01:exon:12648;Parent=MsG0680034619.01.T01
Chr6 exon 91349014 91349195 91349014 ID=MsG0680034619.01.T01:exon:12647;Parent=MsG0680034619.01.T01
Chr6 exon 91349557 91349725 91349557 ID=MsG0680034619.01.T01:exon:12646;Parent=MsG0680034619.01.T01
Chr6 exon 91350588 91350620 91350588 ID=MsG0680034619.01.T01:exon:12645;Parent=MsG0680034619.01.T01
Chr6 exon 91350901 91351011 91350901 ID=MsG0680034619.01.T01:exon:12644;Parent=MsG0680034619.01.T01
Chr6 exon 91351121 91351204 91351121 ID=MsG0680034619.01.T01:exon:12643;Parent=MsG0680034619.01.T01
Chr6 CDS 91351121 91351204 91351121 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91350901 91351011 91350901 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91350588 91350620 91350588 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91349557 91349725 91349557 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91349014 91349195 91349014 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91347782 91347918 91347782 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91347503 91347667 91347503 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91347327 91347396 91347327 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Chr6 CDS 91347122 91347235 91347122 ID=MsG0680034619.01.T01:cds;Parent=MsG0680034619.01.T01
Gene Sequence

>MsG0680034619.01.T01

ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTCGACAGTGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTCACTGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCATCAGGCGCAGGCAAGAAAACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCTTGGAAAGTGGATGCTGGAAGTAGATCTATAGATTTAGAGCTGACTACATTATCAAGTGCGAACCACATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTTCTTAATGATGTTGACAAACTCTCAAGAGAAGCCCAGCATTCTCTCCGCAGAACAATGGAGAAATACAGCGCTTATTGCAGATTAGTTCTATGTTGCAATAGCTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAATGTGCGAATTAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTGGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACCGACAAGCAAACAATTCCCCCAATGGACTGGGAGGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAGGTTTGCTTTTGATACAGTTAACACTTTTCTCATCTTTCATGATAAACAAAACGTTTCATTCAACCTTGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTGACCAATTGCATTCCTCCGGAGATCATTTTGAAGAGACTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTGAAGCATGAAATCTGCCATTGGGCAGCATATTATGTAAGTGCATTATCAAATTATGGTATTTCATGTCAATAG
Protein sequence

>MsG0680034619.01.T01

MLWVDKYRPKTLDSVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKGLLLIQLTLFSSFMINKTFHSTLLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYVSALSNYGISCQ*