AlfalfaGEDB | MsG0380012956.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012956.01

KEGG: K01520
GO: GO:0004170 GO:0046080
PFAM: PF00692

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012956.01.T01	RHN67997.1	98	150	3	0	1	150	38	187	3.67E-100	295

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012956.01.T01	Q9STG6	87.234	141	18	0	10	150	26	166	9.33E-86	251

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012956.01.T01	A0A396IYG6	98.000	150	3	0	1	150	38	187	1.75e-100	295

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0380012956.01	0.861634	8.938850e-64	2.545821e-60
MsG0080048258.01	MsG0380012956.01	0.849495	3.118139e-60	5.921799e-57
MsG0080048775.01	MsG0380012956.01	0.821016	5.052195e-53	4.062660e-50
MsG0080048781.01	MsG0380012956.01	0.819265	1.271544e-52	9.737839e-50
MsG0080048797.01	MsG0380012956.01	0.812949	3.276980e-51	2.111715e-48
MsG0180000111.01	MsG0380012956.01	0.804004	2.660173e-49	1.356415e-46
MsG0180001293.01	MsG0380012956.01	0.846176	2.560059e-59	4.368942e-56
MsG0180001719.01	MsG0380012956.01	0.826581	2.507908e-54	2.361403e-51
MsG0180002134.01	MsG0380012956.01	0.820313	7.325430e-53	5.776224e-50
MsG0180002217.01	MsG0380012956.01	0.802889	4.528482e-49	2.243929e-46
MsG0180002218.01	MsG0380012956.01	0.861507	9.770824e-64	2.771405e-60
MsG0180002397.01	MsG0380012956.01	0.830651	2.604206e-55	2.760930e-52
MsG0180002583.01	MsG0380012956.01	0.808401	3.154604e-50	1.802024e-47
MsG0180003485.01	MsG0380012956.01	0.837254	5.793630e-57	7.482417e-54
MsG0180003698.01	MsG0380012956.01	0.824548	7.603165e-54	6.756337e-51
MsG0180003857.01	MsG0380012956.01	0.866231	3.316505e-65	1.109556e-61
MsG0180004120.01	MsG0380012956.01	0.858952	5.784215e-63	1.502305e-59
MsG0180004185.01	MsG0380012956.01	0.841669	4.129260e-58	6.110931e-55
MsG0180004299.01	MsG0380012956.01	0.850951	1.218217e-60	2.426894e-57
MsG0180004538.01	MsG0380012956.01	0.860316	2.249307e-63	6.122416e-60
MsG0180004583.01	MsG0380012956.01	0.874820	5.009055e-68	2.287550e-64
MsG0180004835.01	MsG0380012956.01	0.833978	3.909241e-56	4.576034e-53
MsG0180004995.01	MsG0380012956.01	0.836081	1.153196e-56	1.437844e-53
MsG0180005048.01	MsG0380012956.01	0.864013	1.650389e-64	5.104618e-61
MsG0180005655.01	MsG0380012956.01	0.802598	5.199276e-49	2.557297e-46
MsG0180006062.01	MsG0380012956.01	0.800995	1.109389e-48	5.239576e-46
MsG0180006133.01	MsG0380012956.01	0.863631	2.168398e-64	6.618491e-61
MsG0280006378.01	MsG0380012956.01	0.827116	1.868471e-54	1.786900e-51
MsG0280010579.01	MsG0380012956.01	0.803055	4.184442e-49	2.082108e-46
MsG0280011083.01	MsG0380012956.01	0.817950	2.527561e-52	1.866646e-49
MsG0380012118.01	MsG0380012956.01	0.800644	1.308323e-48	6.123862e-46
MsG0380012956.01	MsG0380013584.01	0.804047	2.605044e-49	1.329772e-46
MsG0380012956.01	MsG0380014542.01	0.848861	4.678956e-60	8.705661e-57
MsG0380012956.01	MsG0380014666.01	0.869165	3.798718e-66	1.411650e-62
MsG0380012956.01	MsG0380015090.01	0.910566	1.622877e-82	3.333463e-78
MsG0380012956.01	MsG0380015219.01	0.816853	4.463160e-52	3.198697e-49
MsG0380012956.01	MsG0380015340.01	0.852027	6.041174e-61	1.245884e-57
MsG0380012956.01	MsG0380015394.01	0.855434	6.325348e-62	1.460216e-58
MsG0380012956.01	MsG0380015825.01	0.800594	1.339485e-48	6.261665e-46
MsG0380012956.01	MsG0380015954.01	0.836412	9.499235e-57	1.196196e-53
MsG0380012956.01	MsG0380016027.01	0.847473	1.130866e-59	2.012365e-56
MsG0380012956.01	MsG0380016091.01	0.855710	5.256289e-62	1.224650e-58
MsG0380012956.01	MsG0380016092.01	0.811252	7.684510e-51	4.733418e-48
MsG0380012956.01	MsG0380016165.01	0.815575	8.616135e-52	5.962873e-49
MsG0380012956.01	MsG0380016217.01	0.814092	1.836808e-51	1.220949e-48
MsG0380012956.01	MsG0380016225.01	0.827151	1.832928e-54	1.754731e-51
MsG0380012956.01	MsG0380017181.01	0.810444	1.148963e-50	6.926908e-48
MsG0380012956.01	MsG0380017282.01	0.824551	7.594083e-54	6.748769e-51
MsG0380012956.01	MsG0380017332.01	0.808830	2.554102e-50	1.475390e-47
MsG0380012956.01	MsG0380017440.01	0.842513	2.469563e-58	3.753399e-55
MsG0380012956.01	MsG0380017605.01	0.841775	3.873452e-58	5.751414e-55
MsG0380012956.01	MsG0380017632.01	0.826329	2.880661e-54	2.693092e-51
MsG0380012956.01	MsG0380017696.01	0.801723	7.870913e-49	3.785868e-46
MsG0380012956.01	MsG0380018055.01	0.834860	2.346893e-56	2.820563e-53
MsG0380012956.01	MsG0480018228.01	0.839362	1.658612e-57	2.285209e-54
MsG0380012956.01	MsG0480018785.01	0.857778	1.294825e-62	3.232024e-59
MsG0380012956.01	MsG0480020398.01	0.841299	5.168557e-58	7.560940e-55
MsG0380012956.01	MsG0480020856.01	0.838060	3.597710e-57	4.763571e-54
MsG0380012956.01	MsG0480020921.01	0.841569	4.389491e-58	6.476283e-55
MsG0380012956.01	MsG0480020926.01	0.844529	7.147757e-59	1.157271e-55
MsG0380012956.01	MsG0480020970.01	0.834614	2.707374e-56	3.229857e-53
MsG0380012956.01	MsG0480021100.01	0.852794	3.653224e-61	7.723719e-58
MsG0380012956.01	MsG0480021301.01	0.858026	1.092673e-62	2.750576e-59
MsG0380012956.01	MsG0480021456.01	0.852115	5.702991e-61	1.179521e-57
MsG0380012956.01	MsG0480021704.01	0.801457	8.922485e-49	4.263075e-46
MsG0380012956.01	MsG0480021773.01	0.858428	8.295870e-63	2.116670e-59
MsG0380012956.01	MsG0480021902.01	0.879236	1.469767e-69	7.908847e-66
MsG0380012956.01	MsG0480022307.01	0.861336	1.101782e-63	3.107147e-60
MsG0380012956.01	MsG0480022378.01	0.822040	2.930527e-53	2.424992e-50
MsG0380012956.01	MsG0480022559.01	0.803429	3.501494e-49	1.759165e-46
MsG0380012956.01	MsG0480022784.01	0.881273	2.751713e-70	1.601700e-66
MsG0380012956.01	MsG0480022982.01	0.807514	4.869591e-50	2.717740e-47
MsG0380012956.01	MsG0480022991.01	0.840588	7.941677e-58	1.136491e-54
MsG0380012956.01	MsG0480023003.01	0.889056	3.406670e-73	2.705989e-69
MsG0380012956.01	MsG0480023424.01	0.842886	1.966023e-58	3.022707e-55
MsG0380012956.01	MsG0480023426.01	0.873814	1.098662e-67	4.832527e-64
MsG0380012956.01	MsG0480023428.01	0.800237	1.583866e-48	7.337312e-46
MsG0380012956.01	MsG0480023653.01	0.834417	3.033601e-56	3.598003e-53
MsG0380012956.01	MsG0480023679.01	0.842297	2.817776e-58	4.253717e-55
MsG0380012956.01	MsG0480023706.01	0.839013	2.041883e-57	2.783148e-54
MsG0380012956.01	MsG0480023842.01	0.827360	1.632913e-54	1.573118e-51
MsG0380012956.01	MsG0480024002.01	0.812121	4.972191e-51	3.134427e-48
MsG0380012956.01	MsG0480024019.01	0.820328	7.269965e-53	5.734510e-50
MsG0380012956.01	MsG0580024060.01	0.810732	9.957955e-51	6.049996e-48
MsG0380012956.01	MsG0580024276.01	0.829408	5.233246e-55	5.351839e-52
MsG0380012956.01	MsG0580024742.01	0.825126	5.556895e-54	5.020233e-51
MsG0380012956.01	MsG0580024787.01	0.877528	5.844029e-69	2.947979e-65
MsG0380012956.01	MsG0580025177.01	0.843481	1.364873e-58	2.138314e-55
MsG0380012956.01	MsG0580025186.01	0.847193	1.350100e-59	2.380915e-56
MsG0380012956.01	MsG0580025504.01	0.867608	1.207404e-65	4.240976e-62
MsG0380012956.01	MsG0580025506.01	0.831244	1.863212e-55	2.010107e-52
MsG0380012956.01	MsG0580025775.01	0.832854	7.454152e-56	8.435618e-53
MsG0380012956.01	MsG0580028756.01	0.800622	1.321877e-48	6.183827e-46
MsG0380012956.01	MsG0580028923.01	0.837331	5.536556e-57	7.167919e-54
MsG0380012956.01	MsG0580028927.01	0.816223	6.178416e-52	4.352363e-49
MsG0380012956.01	MsG0580028955.01	0.871896	4.817101e-67	1.975304e-63
MsG0380012956.01	MsG0580029102.01	0.802849	4.615690e-49	2.284876e-46
MsG0380012956.01	MsG0580029123.01	0.811570	6.555123e-51	4.071737e-48
MsG0380012956.01	MsG0580029591.01	0.833657	4.703253e-56	5.451766e-53
MsG0380012956.01	MsG0680035350.01	0.838855	2.244221e-57	3.044352e-54
MsG0380012956.01	MsG0680035776.01	0.822904	1.845522e-53	1.565319e-50
MsG0380012956.01	MsG0680035792.01	0.815390	9.476390e-52	6.524823e-49
MsG0380012956.01	MsG0780036534.01	0.866503	2.717887e-65	9.181365e-62
MsG0380012956.01	MsG0780037741.01	0.809865	1.531655e-50	9.095162e-48
MsG0380012956.01	MsG0780038402.01	0.845285	4.468382e-59	7.410367e-56
MsG0380012956.01	MsG0780038642.01	0.807093	5.981043e-50	3.301524e-47
MsG0380012956.01	MsG0780038736.01	0.873578	1.319562e-67	5.755423e-64
MsG0380012956.01	MsG0780039861.01	0.846564	2.007131e-59	3.468787e-56
MsG0380012956.01	MsG0780040620.01	0.877558	5.705571e-69	2.880828e-65
MsG0380012956.01	MsG0780040641.01	0.871363	7.234264e-67	2.910365e-63
MsG0380012956.01	MsG0780040899.01	0.811881	5.607109e-51	3.511685e-48
MsG0380012956.01	MsG0780041008.01	0.829054	6.380060e-55	6.455844e-52
MsG0380012956.01	MsG0780041273.01	0.860444	2.056794e-63	5.623630e-60
MsG0380012956.01	MsG0780041340.01	0.827656	1.386757e-54	1.347224e-51
MsG0380012956.01	MsG0780041359.01	0.877744	4.913337e-69	2.498801e-65
MsG0380012956.01	MsG0880043684.01	0.809336	1.990053e-50	1.165264e-47
MsG0380012956.01	MsG0880043714.01	0.812138	4.929679e-51	3.109121e-48
MsG0380012956.01	MsG0880043752.01	0.809742	1.628166e-50	9.637454e-48
MsG0380012956.01	MsG0880044437.01	0.827034	1.955191e-54	1.865322e-51
MsG0380012956.01	MsG0880045015.01	0.809830	1.558428e-50	9.245718e-48
MsG0380012956.01	MsG0880045612.01	0.867985	9.134355e-66	3.250890e-62
MsG0380012956.01	MsG0880045647.01	0.859008	5.566986e-63	1.448641e-59
MsG0380012956.01	MsG0880046411.01	0.813191	2.900853e-51	1.881547e-48
MsG0380012956.01	MsG0880046529.01	0.810859	9.349400e-51	5.699596e-48
MsG0380012956.01	MsG0880046646.01	0.825854	3.734671e-54	3.445039e-51
MsG0380012956.01	MsG0880046904.01	0.876051	1.898731e-68	9.072574e-65
MsG0380012956.01	MsG0880046905.01	0.877418	6.383818e-69	3.207917e-65
MsG0380012956.01	MsG0880046993.01	0.823307	1.486458e-53	1.275112e-50
MsG0380012956.01	MsG0880047649.01	0.877255	7.276250e-69	3.634877e-65
MsG0280006540.01	MsG0380012956.01	0.805852	1.092785e-49	5.843609e-47
MsG0280006563.01	MsG0380012956.01	0.848464	6.029174e-60	1.107499e-56
MsG0280006909.01	MsG0380012956.01	0.807241	5.563880e-50	3.083250e-47
MsG0280007919.01	MsG0380012956.01	0.823442	1.382485e-53	1.190433e-50
MsG0280009866.01	MsG0380012956.01	0.809586	1.759048e-50	1.036909e-47

PPI

Gene1	Gene2	Type
MsG0380012956.01	MsG0680034619.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012956.01.T01	MTR_3g063110	98.000	150	3	0	1	150	1	150	2.00e-103	292

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012956.01.T01	AT3G46940	87.234	141	18	0	10	150	26	166	9.52e-87	251
MsG0380012956.01.T01	AT3G46940	87.234	141	18	0	10	150	67	207	9.82e-87	252

Find 46 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTGAAATTTCTGAGGTTT+TGG	0.210645	3:+27647432	MsG0380012956.01.T01:CDS
GTTAGAGGTGAAGGTGGTTT+TGG	0.293840	3:+27647469	MsG0380012956.01.T01:CDS
GATTTGGATTCTACTGTTAG+AGG	0.343621	3:+27647454	MsG0380012956.01.T01:CDS
TTTCTTCACTCGGAGAAAAC+TGG	0.351836	3:-27646998	None:intergenic
ACACGAGCATAGGTTCCTTC+AGG	0.369361	3:-27647153	None:intergenic
TCCAAAACCTCAGAAATTTC+AGG	0.370463	3:-27647433	None:intergenic
AACCTTTGAATCGGCGGCGC+TGG	0.374420	3:-27647082	None:intergenic
TCAACAATGTCCAACTTAAA+CGG	0.388632	3:+27646964	None:intergenic
CTGATTACAGAGGACCTGTT+GGG	0.415838	3:+27647323	MsG0380012956.01.T01:CDS
CATTCGATTGACGTTGGTGC+TGG	0.432456	3:+27647289	MsG0380012956.01.T01:CDS
ATGAGAGCTTTGCCGCGAGC+AGG	0.461473	3:-27647105	None:intergenic
TGAAACGACGCCGTTTAAGT+TGG	0.465891	3:-27646974	None:intergenic
CGCCGAGATCGGGGTTGACA+TGG	0.473074	3:+27647263	MsG0380012956.01.T01:CDS
TTCCATGTCAACCCCGATCT+CGG	0.481839	3:-27647265	None:intergenic
TTAAACAGTATAACCCCAAC+AGG	0.497604	3:-27647337	None:intergenic
CGCGGATCTCCTCTCTCCGC+CGG	0.497937	3:+27647048	MsG0380012956.01.T01:CDS
GGAAGGTATAACGGCTTTGT+CGG	0.505146	3:-27647025	None:intergenic
GATTCTACTGTTAGAGGTGA+AGG	0.505946	3:+27647460	MsG0380012956.01.T01:CDS
TGTCGGAGAGTTTCTTCACT+CGG	0.507441	3:-27647008	None:intergenic
CTCCAGCGCCGCCGATTCAA+AGG	0.509909	3:+27647080	MsG0380012956.01.T01:CDS
CTCTCCATCGCCGTCCCTGA+AGG	0.513836	3:+27647138	MsG0380012956.01.T01:CDS
GGCGCTGGAGAGATCGTATC+CGG	0.519854	3:-27647067	None:intergenic
CACGAGCATAGGTTCCTTCA+GGG	0.535140	3:-27647152	None:intergenic
AGATCCGCGGGAAGGTATAA+CGG	0.535522	3:-27647034	None:intergenic
GGCGGAGAGAGGAGATCCGC+GGG	0.537040	3:-27647046	None:intergenic
GCGAGCAGGAACCTTTGAAT+CGG	0.540643	3:-27647091	None:intergenic
ACGGCGATGGAGAGATCTGT+GGG	0.554559	3:-27647129	None:intergenic
GGTTCCTTCAGGGACGGCGA+TGG	0.559917	3:-27647142	None:intergenic
TATTACTCCTGAAATTTCTG+AGG	0.568921	3:+27647426	MsG0380012956.01.T01:CDS
TCTACTGTTAGAGGTGAAGG+TGG	0.578300	3:+27647463	MsG0380012956.01.T01:CDS
GACGGCGATGGAGAGATCTG+TGG	0.578622	3:-27647130	None:intergenic
AGCAGGAACCTTTGAATCGG+CGG	0.581168	3:-27647088	None:intergenic
GTAATTACCAACACGAGCAT+AGG	0.588762	3:-27647163	None:intergenic
AGATCGTATCCGGCGGAGAG+AGG	0.592423	3:-27647057	None:intergenic
GAAGGAACCTATGCTCGTGT+TGG	0.606547	3:+27647156	MsG0380012956.01.T01:CDS
GCTGATTACAGAGGACCTGT+TGG	0.614644	3:+27647322	MsG0380012956.01.T01:CDS
TGGAAGCATTCGATTGACGT+TGG	0.614719	3:+27647283	MsG0380012956.01.T01:CDS
GAGAGAGGAGATCCGCGGGA+AGG	0.626530	3:-27647042	None:intergenic
AGCATAGGTTCCTTCAGGGA+CGG	0.629807	3:-27647148	None:intergenic
GATTCAAAGGTTCCTGCTCG+CGG	0.632457	3:+27647093	MsG0380012956.01.T01:CDS
CGGCGGAGAGAGGAGATCCG+CGG	0.639931	3:-27647047	None:intergenic
TGATTACAGAGGACCTGTTG+GGG	0.654205	3:+27647324	MsG0380012956.01.T01:CDS
AAAGCCGTTATACCTTCCCG+CGG	0.736814	3:+27647030	MsG0380012956.01.T01:CDS
GTGATTGATGCTGATTACAG+AGG	0.740502	3:+27647313	MsG0380012956.01.T01:CDS
GCTGGAGAGATCGTATCCGG+CGG	0.743244	3:-27647064	None:intergenic
CGGCGATGGAGAGATCTGTG+GGG	0.756952	3:-27647128	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAACCCTAAAATTCAAAAT+TGG	-	Chr3:27647203-27647222	None:intergenic	20.0%
!!	AAACCCTAAAATTCAAAATT+GGG	-	Chr3:27647202-27647221	None:intergenic	20.0%
!!	TAAAATTCAAAATTGGGAAA+GGG	-	Chr3:27647196-27647215	None:intergenic	20.0%
!!!	ATTTTAGGGTTTTGAAATTT+AGG	+	Chr3:27647210-27647229	MsG0380012956.01.T01:intron	20.0%
!!!	TTTCCCAATTTTGAATTTTA+GGG	+	Chr3:27647196-27647215	MsG0380012956.01.T01:intron	20.0%
!!!	TTTTAGGGTTTTGAAATTTA+GGG	+	Chr3:27647211-27647230	MsG0380012956.01.T01:intron	20.0%
!	AAAATTCAAAATTGGGAAAG+GGG	-	Chr3:27647195-27647214	None:intergenic	25.0%
!	CTAAAATTCAAAATTGGGAA+AGG	-	Chr3:27647197-27647216	None:intergenic	25.0%
!!	CTTTCCCAATTTTGAATTTT+AGG	+	Chr3:27647195-27647214	MsG0380012956.01.T01:intron	25.0%
	TATTACTCCTGAAATTTCTG+AGG	+	Chr3:27647426-27647445	MsG0380012956.01.T01:CDS	30.0%
!!!	AATTTCTGAGGTTTTGGATT+TGG	+	Chr3:27647438-27647457	MsG0380012956.01.T01:CDS	30.0%
!!!	GTTGATTTTGAAGTGAAAGT+TGG	+	Chr3:27647370-27647389	MsG0380012956.01.T01:CDS	30.0%
	GATTTGGATTCTACTGTTAG+AGG	+	Chr3:27647454-27647473	MsG0380012956.01.T01:CDS	35.0%
	TCCAAAACCTCAGAAATTTC+AGG	-	Chr3:27647436-27647455	None:intergenic	35.0%
	TTAAACAGTATAACCCCAAC+AGG	-	Chr3:27647340-27647359	None:intergenic	35.0%
!!!	TCCTGAAATTTCTGAGGTTT+TGG	+	Chr3:27647432-27647451	MsG0380012956.01.T01:CDS	35.0%
	GATTCTACTGTTAGAGGTGA+AGG	+	Chr3:27647460-27647479	MsG0380012956.01.T01:CDS	40.0%
	GTAATTACCAACACGAGCAT+AGG	-	Chr3:27647166-27647185	None:intergenic	40.0%
	TTTCTTCACTCGGAGAAAAC+TGG	-	Chr3:27647001-27647020	None:intergenic	40.0%
!	GTGATTGATGCTGATTACAG+AGG	+	Chr3:27647313-27647332	MsG0380012956.01.T01:CDS	40.0%
!!!	AAGGTGGTTTTGGATCTACT+GGG	+	Chr3:27647479-27647498	MsG0380012956.01.T01:CDS	40.0%
	CTGATTACAGAGGACCTGTT+GGG	+	Chr3:27647323-27647342	MsG0380012956.01.T01:CDS	45.0%
	TCTACTGTTAGAGGTGAAGG+TGG	+	Chr3:27647463-27647482	MsG0380012956.01.T01:CDS	45.0%
	TGAAACGACGCCGTTTAAGT+TGG	-	Chr3:27646977-27646996	None:intergenic	45.0%
	TGATTACAGAGGACCTGTTG+GGG	+	Chr3:27647324-27647343	MsG0380012956.01.T01:CDS	45.0%
	TGTCGGAGAGTTTCTTCACT+CGG	-	Chr3:27647011-27647030	None:intergenic	45.0%
!	GGAAGGTATAACGGCTTTGT+CGG	-	Chr3:27647028-27647047	None:intergenic	45.0%
!	GTTAGAGGTGAAGGTGGTTT+TGG	+	Chr3:27647469-27647488	MsG0380012956.01.T01:CDS	45.0%
!!	TGGAAGCATTCGATTGACGT+TGG	+	Chr3:27647283-27647302	MsG0380012956.01.T01:CDS	45.0%
!!!	AGGTGGTTTTGGATCTACTG+GGG	+	Chr3:27647480-27647499	MsG0380012956.01.T01:CDS	45.0%
!!!	GAAGGTGGTTTTGGATCTAC+TGG	+	Chr3:27647478-27647497	MsG0380012956.01.T01:CDS	45.0%
	AAAGCCGTTATACCTTCCCG+CGG	+	Chr3:27647030-27647049	MsG0380012956.01.T01:CDS	50.0%
	ACACGAGCATAGGTTCCTTC+AGG	-	Chr3:27647156-27647175	None:intergenic	50.0%
	AGCAGGAACCTTTGAATCGG+CGG	-	Chr3:27647091-27647110	None:intergenic	50.0%
	AGCATAGGTTCCTTCAGGGA+CGG	-	Chr3:27647151-27647170	None:intergenic	50.0%
	CACGAGCATAGGTTCCTTCA+GGG	-	Chr3:27647155-27647174	None:intergenic	50.0%
	CATTCGATTGACGTTGGTGC+TGG	+	Chr3:27647289-27647308	MsG0380012956.01.T01:CDS	50.0%
	GAAGGAACCTATGCTCGTGT+TGG	+	Chr3:27647156-27647175	MsG0380012956.01.T01:CDS	50.0%
	GATTCAAAGGTTCCTGCTCG+CGG	+	Chr3:27647093-27647112	MsG0380012956.01.T01:CDS	50.0%
	GCGAGCAGGAACCTTTGAAT+CGG	-	Chr3:27647094-27647113	None:intergenic	50.0%
	GCTGATTACAGAGGACCTGT+TGG	+	Chr3:27647322-27647341	MsG0380012956.01.T01:CDS	50.0%
	TTCCATGTCAACCCCGATCT+CGG	-	Chr3:27647268-27647287	None:intergenic	50.0%
!	AGATCCGCGGGAAGGTATAA+CGG	-	Chr3:27647037-27647056	None:intergenic	50.0%
!!	ATTTTTGCAGCGCCGAGATC+GGG	+	Chr3:27647253-27647272	MsG0380012956.01.T01:intron	50.0%
!!	GATTTTTGCAGCGCCGAGAT+CGG	+	Chr3:27647252-27647271	MsG0380012956.01.T01:intron	50.0%
	ACGGCGATGGAGAGATCTGT+GGG	-	Chr3:27647132-27647151	None:intergenic	55.0%
!!	TTTTTGCAGCGCCGAGATCG+GGG	+	Chr3:27647254-27647273	MsG0380012956.01.T01:intron	55.0%
	AACCTTTGAATCGGCGGCGC+TGG	-	Chr3:27647085-27647104	None:intergenic	60.0%
	AGATCGTATCCGGCGGAGAG+AGG	-	Chr3:27647060-27647079	None:intergenic	60.0%
	ATGAGAGCTTTGCCGCGAGC+AGG	-	Chr3:27647108-27647127	None:intergenic	60.0%
	CGGCGATGGAGAGATCTGTG+GGG	-	Chr3:27647131-27647150	None:intergenic	60.0%
	GACGGCGATGGAGAGATCTG+TGG	-	Chr3:27647133-27647152	None:intergenic	60.0%
	GCTGGAGAGATCGTATCCGG+CGG	-	Chr3:27647067-27647086	None:intergenic	60.0%
!	GGCGCTGGAGAGATCGTATC+CGG	-	Chr3:27647070-27647089	None:intergenic	60.0%
	CGCCGAGATCGGGGTTGACA+TGG	+	Chr3:27647263-27647282	MsG0380012956.01.T01:CDS	65.0%
	CTCTCCATCGCCGTCCCTGA+AGG	+	Chr3:27647138-27647157	MsG0380012956.01.T01:CDS	65.0%
	GAGAGAGGAGATCCGCGGGA+AGG	-	Chr3:27647045-27647064	None:intergenic	65.0%
	GGTTCCTTCAGGGACGGCGA+TGG	-	Chr3:27647145-27647164	None:intergenic	65.0%
!!	CTCCAGCGCCGCCGATTCAA+AGG	+	Chr3:27647080-27647099	MsG0380012956.01.T01:CDS	65.0%
	CGCGGATCTCCTCTCTCCGC+CGG	+	Chr3:27647048-27647067	MsG0380012956.01.T01:CDS	70.0%
	CGGCGGAGAGAGGAGATCCG+CGG	-	Chr3:27647050-27647069	None:intergenic	70.0%
	GGCGGAGAGAGGAGATCCGC+GGG	-	Chr3:27647049-27647068	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	27646970	27647507	27646970	ID=MsG0380012956.01;Name=MsG0380012956.01
Chr3	mRNA	27646970	27647507	27646970	ID=MsG0380012956.01.T01;Parent=MsG0380012956.01;Name=MsG0380012956.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0\|0\|1\|1\|1\|2\|0\|150
Chr3	exon	27646970	27647177	27646970	ID=MsG0380012956.01.T01:exon:24062;Parent=MsG0380012956.01.T01
Chr3	exon	27647263	27647507	27647263	ID=MsG0380012956.01.T01:exon:24063;Parent=MsG0380012956.01.T01
Chr3	CDS	27646970	27647177	27646970	ID=MsG0380012956.01.T01:cds;Parent=MsG0380012956.01.T01
Chr3	CDS	27647263	27647507	27647263	ID=MsG0380012956.01.T01:cds;Parent=MsG0380012956.01.T01

Gene Sequence

>MsG0380012956.01.T01

ATGTCCAACTTAAACGGCGTCGTTTCATCCAGTTTTCTCCGAGTGAAGAAACTCTCCGACAAAGCCGTTATACCTTCCCGCGGATCTCCTCTCTCCGCCGGATACGATCTCTCCAGCGCCGCCGATTCAAAGGTTCCTGCTCGCGGCAAAGCTCTCATCCCCACAGATCTCTCCATCGCCGTCCCTGAAGGAACCTATGCTCGTGTTGCGCCGAGATCGGGGTTGACATGGAAGCATTCGATTGACGTTGGTGCTGGAGTGATTGATGCTGATTACAGAGGACCTGTTGGGGTTATACTGTTTAATCATTCAGATGTTGATTTTGAAGTGAAAGTTGGTGATAGAGTTGCTCAGTTGATTATTGAGAAGATTATTACTCCTGAAATTTCTGAGGTTTTGGATTTGGATTCTACTGTTAGAGGTGAAGGTGGTTTTGGATCTACTGGGGTTTGA

Protein sequence

>MsG0380012956.01.T01

MSNLNGVVSSSFLRVKKLSDKAVIPSRGSPLSAGYDLSSAADSKVPARGKALIPTDLSIAVPEGTYARVAPRSGLTWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRVAQLIIEKIITPEISEVLDLDSTVRGEGGFGSTGV*