AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016270.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016270.01.T01 MTR_3g086670 94.671 319 15 1 1 319 12 328 0.0 617
MsG0380016270.01.T01 MTR_8g089850 63.043 322 108 6 1 319 13 326 4.76e-130 374
MsG0380016270.01.T01 MTR_3g099670 38.129 278 162 4 1 270 14 289 1.33e-55 184
MsG0380016270.01.T01 MTR_4g115420 26.349 315 199 13 1 297 16 315 3.07e-15 76.6
MsG0380016270.01.T01 MTR_2g037980 31.472 197 117 7 1 182 14 207 3.86e-15 76.3
MsG0380016270.01.T01 MTR_4g127440 28.947 190 117 5 1 175 14 200 4.66e-15 76.3
MsG0380016270.01.T01 MTR_3g106900 34.286 140 87 3 1 137 13 150 1.78e-14 74.3
MsG0380016270.01.T01 MTR_8g008860 38.462 117 70 2 21 137 37 151 3.82e-13 70.5
MsG0380016270.01.T01 MTR_2g008170 35.897 117 73 2 21 137 37 151 4.34e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016270.01.T01 AT4G40080 49.118 340 147 8 1 318 14 349 2.93e-99 297
MsG0380016270.01.T01 AT5G10410 31.962 316 180 9 1 292 12 316 1.62e-33 126
MsG0380016270.01.T01 AT5G65370 30.435 299 165 9 1 271 11 294 2.18e-29 114
MsG0380016270.01.T01 AT5G57200 30.612 196 119 6 1 182 14 206 9.78e-16 78.2
MsG0380016270.01.T01 AT2G01600 32.642 193 113 7 21 200 36 224 2.15e-15 77.0
MsG0380016270.01.T01 AT4G25940 29.592 196 114 6 1 175 14 206 3.15e-15 76.6
MsG0380016270.01.T01 AT1G14910 27.333 300 183 12 21 292 36 328 3.20e-14 73.9
MsG0380016270.01.T01 AT5G35200 30.000 180 116 6 1 175 18 192 2.95e-12 67.8
MsG0380016270.01.T01 AT5G35200 30.000 180 116 6 1 175 18 192 2.95e-12 67.8
MsG0380016270.01.T01 AT2G25430 32.143 140 90 3 1 137 12 149 3.82e-12 67.4
MsG0380016270.01.T01 AT4G02650 32.394 142 89 3 1 137 13 152 1.60e-11 65.5
MsG0380016270.01.T01 AT4G32285 31.429 140 91 3 1 137 12 149 1.92e-11 65.5
MsG0380016270.01.T01 AT4G32285 31.429 140 91 3 1 137 12 149 1.92e-11 65.5

Find 91 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGGTGATTAAACATTTA+AGG 0.160995 3:-81291338 None:intergenic
TGGTTAGAGTTAAAGAATTT+AGG 0.190553 3:+81291757 MsG0380016270.01.T01:CDS
GGTTAGAGTTAAAGAATTTA+GGG 0.248083 3:+81291758 MsG0380016270.01.T01:CDS
GTCAAGAGGTGTTTGTGTTT+TGG 0.268343 3:-81291219 None:intergenic
AAACTTGGTTGTCTTGGTTT+TGG 0.268735 3:+81291789 MsG0380016270.01.T01:CDS
TGATTCTTTGTTGGCCTTGA+TGG 0.273576 3:+81291626 MsG0380016270.01.T01:CDS
CAAGGTGGTTGTTGAGATAA+TGG 0.290329 3:+81291692 MsG0380016270.01.T01:CDS
GGAGAAGAAATTCTGGGATT+TGG 0.296571 3:+81291896 MsG0380016270.01.T01:CDS
CTGTGTGCTTCTAGAACTCT+TGG 0.303930 3:+81291531 MsG0380016270.01.T01:CDS
TGGTTGAGGAGAAGAAATTC+TGG 0.306064 3:+81291889 MsG0380016270.01.T01:CDS
TATCTTGGGAACTCTCTTCT+TGG 0.310691 3:+81291475 MsG0380016270.01.T01:CDS
AGAACTCTTGGTTTCTTCCT+TGG 0.315271 3:+81291543 MsG0380016270.01.T01:CDS
CTCTTGACTCTTCTTTCCTC+TGG 0.318672 3:+81291234 MsG0380016270.01.T01:CDS
CCATTAGGTTTCCTTCTTCA+AGG 0.324011 3:+81292051 MsG0380016270.01.T01:CDS
TGTTCACTCATTGGAGTATT+AGG 0.324515 3:-81291666 None:intergenic
TGGGAGGATGAAGGTGTATA+GGG 0.331362 3:+81291941 MsG0380016270.01.T01:CDS
ACAAAACAAGTTCAATATCT+TGG 0.345547 3:+81291460 MsG0380016270.01.T01:CDS
TTCTCTTAACAGATCACTAT+TGG 0.348060 3:-81291601 None:intergenic
ATCTTGGGAACTCTCTTCTT+GGG 0.358410 3:+81291476 MsG0380016270.01.T01:CDS
TTAGGTCTGTTGATTCCATT+AGG 0.360896 3:+81292036 MsG0380016270.01.T01:CDS
GGTGGAAGATGATGGGGTTA+TGG 0.363211 3:+81291719 MsG0380016270.01.T01:CDS
ACCTTGTTCTGTTCACTCAT+TGG 0.369895 3:-81291675 None:intergenic
TTGGGAGGATGAAGGTGTAT+AGG 0.379157 3:+81291940 MsG0380016270.01.T01:CDS
AAGAGAAACTGATTCTTTGT+TGG 0.385719 3:+81291617 MsG0380016270.01.T01:CDS
AACGGTGATTAAACATTTAA+GGG 0.387577 3:-81291337 None:intergenic
TATGGTGATGAATGAAGTTC+TGG 0.400658 3:+81291737 MsG0380016270.01.T01:CDS
ATGAAGGTGTATAGGGAAGA+AGG 0.403447 3:+81291948 MsG0380016270.01.T01:CDS
TTGGCCTTGATGGAAGGAAT+TGG 0.410057 3:+81291636 MsG0380016270.01.T01:CDS
TTTAGGGAGAGGGAGAAACT+TGG 0.415643 3:+81291774 MsG0380016270.01.T01:CDS
AGGGAGAAACTTGGTTGTCT+TGG 0.426496 3:+81291783 MsG0380016270.01.T01:CDS
GGTTGTTGAGATAATGGATT+TGG 0.430930 3:+81291698 MsG0380016270.01.T01:CDS
CTCTGAAGTTTGAGAGGTTG+AGG 0.434153 3:-81291437 None:intergenic
GGTTTGATGACAGAGTTCTT+AGG 0.440749 3:+81292018 MsG0380016270.01.T01:CDS
CTGCTGAGTTGTGAGTGGTT+TGG 0.441669 3:-81291311 None:intergenic
ACCACCAGTGTAAGGGTAAA+CGG 0.442204 3:-81291406 None:intergenic
TGGATTTGGTGGAAGATGAT+GGG 0.446048 3:+81291712 MsG0380016270.01.T01:CDS
CAAAACAAGTTCAATATCTT+GGG 0.446855 3:+81291461 MsG0380016270.01.T01:CDS
TAGTTTCTACCACCAGTGTA+AGG 0.447417 3:-81291414 None:intergenic
AACTCTCTTCTTGGGTTCGA+TGG 0.450996 3:+81291484 MsG0380016270.01.T01:CDS
CCTTGAAGAAGGAAACCTAA+TGG 0.462290 3:-81292051 None:intergenic
AGTTAAAGAATTTAGGGAGA+GGG 0.464143 3:+81291764 MsG0380016270.01.T01:CDS
AGAGAATTGAAGGAAAAGGT+TGG 0.470401 3:+81291921 MsG0380016270.01.T01:CDS
GATGATGATGGAGGTGGTTG+AGG 0.470627 3:+81291875 MsG0380016270.01.T01:CDS
CTCTGCGGTGGAGCTTCTCA+TGG 0.472704 3:+81291281 MsG0380016270.01.T01:CDS
GGATTTGGTGAGAGAATTGA+AGG 0.473257 3:+81291911 MsG0380016270.01.T01:CDS
ATGGATTTGGTGGAAGATGA+TGG 0.474899 3:+81291711 MsG0380016270.01.T01:CDS
TGGCCTTGATGGAAGGAATT+GGG 0.482108 3:+81291637 MsG0380016270.01.T01:CDS
TGAAGGTGTATAGGGAAGAA+GGG 0.482642 3:+81291949 MsG0380016270.01.T01:CDS
GGTGAGAGAATTGAAGGAAA+AGG 0.483133 3:+81291917 MsG0380016270.01.T01:CDS
AAGCTCCACCGCAGAGGATG+CGG 0.484245 3:-81291274 None:intergenic
ACTCTTCTTTCCTCTGGAGA+CGG 0.488107 3:+81291240 MsG0380016270.01.T01:CDS
GAGAATTGAAGGAAAAGGTT+GGG 0.493649 3:+81291922 MsG0380016270.01.T01:CDS
GAGTTAAAGAATTTAGGGAG+AGG 0.496321 3:+81291763 MsG0380016270.01.T01:CDS
TTTCCCAATTCCTTCCATCA+AGG 0.501907 3:-81291640 None:intergenic
GGTTGAGGAGAAGAAATTCT+GGG 0.518899 3:+81291890 MsG0380016270.01.T01:CDS
TGTTGAGATAATGGATTTGG+TGG 0.523862 3:+81291701 MsG0380016270.01.T01:CDS
GGTGAAACGACGTCAGAGAA+AGG 0.547020 3:+81291564 MsG0380016270.01.T01:CDS
GTCATCAAACCGATCAGACT+CGG 0.547520 3:-81292006 None:intergenic
GGATTTGGTGGAAGATGATG+GGG 0.552285 3:+81291713 MsG0380016270.01.T01:CDS
GGAAAAGGTTGGGAGGATGA+AGG 0.554877 3:+81291932 MsG0380016270.01.T01:CDS
GAGCTGATCACGGAGGATGA+AGG 0.556396 3:-81291382 None:intergenic
AGAAGGGAGGCTTAGCAGTA+CGG 0.556866 3:+81291965 MsG0380016270.01.T01:CDS
AGTTGTGAGTGGTTTGGAGA+CGG 0.568196 3:-81291305 None:intergenic
TCTTTGTTGGCCTTGATGGA+AGG 0.570838 3:+81291630 MsG0380016270.01.T01:CDS
ACAGAAGAACCGAGTCTGAT+CGG 0.577525 3:+81291997 MsG0380016270.01.T01:CDS
TGCCACCGCATCCTCTGCGG+TGG 0.581913 3:+81291269 MsG0380016270.01.T01:CDS
TCCGTTTACCCTTACACTGG+TGG 0.585451 3:+81291405 MsG0380016270.01.T01:CDS
GAGTTCTAGAAGCACACAGA+AGG 0.587402 3:-81291527 None:intergenic
CTCCACCGCAGAGGATGCGG+TGG 0.587882 3:-81291271 None:intergenic
GGCTACTGCTGAGTTGTGAG+TGG 0.589218 3:-81291316 None:intergenic
TCCAATGAGTGAACAGAACA+AGG 0.589835 3:+81291674 MsG0380016270.01.T01:CDS
ATATACAAGAACCTTGAAGA+AGG 0.591415 3:-81292062 None:intergenic
CATGTGTTGTGGCACGTAGG+AGG 0.596737 3:-81291182 None:intergenic
AATTGAAGGAAAAGGTTGGG+AGG 0.600206 3:+81291925 MsG0380016270.01.T01:CDS
CTCTCCGTTTACCCTTACAC+TGG 0.601794 3:+81291402 MsG0380016270.01.T01:CDS
TTCTTGGGTTCGATGGTACG+CGG 0.608953 3:+81291491 MsG0380016270.01.T01:CDS
AGTTTCTACCACCAGTGTAA+GGG 0.622840 3:-81291413 None:intergenic
AGGTACCGTGTTTGATGATG+TGG 0.633958 3:-81291362 None:intergenic
GGCACGTGAACCGTCTCCAG+AGG 0.642214 3:-81291250 None:intergenic
AGGTGTATAGGGAAGAAGGG+AGG 0.646656 3:+81291952 MsG0380016270.01.T01:CDS
CATGAGAAGCTCCACCGCAG+AGG 0.658489 3:-81291280 None:intergenic
CAGAGGAAAGAAGAGTCAAG+AGG 0.661118 3:-81291233 None:intergenic
GTTGAAAGAGTCATGTGTTG+TGG 0.662998 3:-81291193 None:intergenic
AGTCATGTGTTGTGGCACGT+AGG 0.663095 3:-81291185 None:intergenic
GGTAAACGGAGAGCTGATCA+CGG 0.664071 3:-81291392 None:intergenic
GTGTTTGATGATGTGGTGAA+CGG 0.672563 3:-81291355 None:intergenic
ACGTGCCACCGCATCCTCTG+CGG 0.680106 3:+81291266 MsG0380016270.01.T01:CDS
TCTCTGACGTCGTTTCACCA+AGG 0.687518 3:-81291560 None:intergenic
GTTCACCACATCATCAAACA+CGG 0.717926 3:+81291357 MsG0380016270.01.T01:CDS
AATGAGTGAACAGAACAAGG+TGG 0.762477 3:+81291677 MsG0380016270.01.T01:CDS
AAACGGAGAGCTGATCACGG+AGG 0.785713 3:-81291389 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AACGGTGATTAAACATTTAA+GGG - Chr3:81291340-81291359 None:intergenic 25.0%
! ACAAAACAAGTTCAATATCT+TGG + Chr3:81291460-81291479 MsG0380016270.01.T01:CDS 25.0%
! CAAAACAAGTTCAATATCTT+GGG + Chr3:81291461-81291480 MsG0380016270.01.T01:CDS 25.0%
! GGTTAGAGTTAAAGAATTTA+GGG + Chr3:81291758-81291777 MsG0380016270.01.T01:CDS 25.0%
! TGGTTAGAGTTAAAGAATTT+AGG + Chr3:81291757-81291776 MsG0380016270.01.T01:CDS 25.0%
AGTTAAAGAATTTAGGGAGA+GGG + Chr3:81291764-81291783 MsG0380016270.01.T01:CDS 30.0%
ATATACAAGAACCTTGAAGA+AGG - Chr3:81292065-81292084 None:intergenic 30.0%
GAACGGTGATTAAACATTTA+AGG - Chr3:81291341-81291360 None:intergenic 30.0%
TTCTCTTAACAGATCACTAT+TGG - Chr3:81291604-81291623 None:intergenic 30.0%
! AAGAGAAACTGATTCTTTGT+TGG + Chr3:81291617-81291636 MsG0380016270.01.T01:CDS 30.0%
AGAGAATTGAAGGAAAAGGT+TGG + Chr3:81291921-81291940 MsG0380016270.01.T01:CDS 35.0%
GAGAATTGAAGGAAAAGGTT+GGG + Chr3:81291922-81291941 MsG0380016270.01.T01:CDS 35.0%
GAGTTAAAGAATTTAGGGAG+AGG + Chr3:81291763-81291782 MsG0380016270.01.T01:CDS 35.0%
! AAACTTGGTTGTCTTGGTTT+TGG + Chr3:81291789-81291808 MsG0380016270.01.T01:CDS 35.0%
! GAGAATGATGATGATGATGA+TGG + Chr3:81291863-81291882 MsG0380016270.01.T01:CDS 35.0%
! TATGGTGATGAATGAAGTTC+TGG + Chr3:81291737-81291756 MsG0380016270.01.T01:CDS 35.0%
! TGTTCACTCATTGGAGTATT+AGG - Chr3:81291669-81291688 None:intergenic 35.0%
!! AATGATGATGATGATGATGG+AGG + Chr3:81291866-81291885 MsG0380016270.01.T01:CDS 35.0%
!! GGTTGTTGAGATAATGGATT+TGG + Chr3:81291698-81291717 MsG0380016270.01.T01:CDS 35.0%
!! TGTTGAGATAATGGATTTGG+TGG + Chr3:81291701-81291720 MsG0380016270.01.T01:CDS 35.0%
!! TTAGGTCTGTTGATTCCATT+AGG + Chr3:81292036-81292055 MsG0380016270.01.T01:CDS 35.0%
!!! GGTTTGTGTTTTGAAGAGAT+TGG + Chr3:81291827-81291846 MsG0380016270.01.T01:CDS 35.0%
!!! TTTTGTCTCTGAAGTTTGAG+AGG - Chr3:81291446-81291465 None:intergenic 35.0%
AATGAGTGAACAGAACAAGG+TGG + Chr3:81291677-81291696 MsG0380016270.01.T01:CDS 40.0%
AATTGAAGGAAAAGGTTGGG+AGG + Chr3:81291925-81291944 MsG0380016270.01.T01:CDS 40.0%
ACCTTGTTCTGTTCACTCAT+TGG - Chr3:81291678-81291697 None:intergenic 40.0%
AGAACTCTTGGTTTCTTCCT+TGG + Chr3:81291543-81291562 MsG0380016270.01.T01:CDS 40.0%
AGTTTCTACCACCAGTGTAA+GGG - Chr3:81291416-81291435 None:intergenic 40.0%
ATCTTGGGAACTCTCTTCTT+GGG + Chr3:81291476-81291495 MsG0380016270.01.T01:CDS 40.0%
CAAGGTGGTTGTTGAGATAA+TGG + Chr3:81291692-81291711 MsG0380016270.01.T01:CDS 40.0%
CCATTAGGTTTCCTTCTTCA+AGG + Chr3:81292051-81292070 MsG0380016270.01.T01:CDS 40.0%
CCTTGAAGAAGGAAACCTAA+TGG - Chr3:81292054-81292073 None:intergenic 40.0%
GGTGAGAGAATTGAAGGAAA+AGG + Chr3:81291917-81291936 MsG0380016270.01.T01:CDS 40.0%
GGTTGAGGAGAAGAAATTCT+GGG + Chr3:81291890-81291909 MsG0380016270.01.T01:CDS 40.0%
GTTCACCACATCATCAAACA+CGG + Chr3:81291357-81291376 MsG0380016270.01.T01:CDS 40.0%
GTTGAAAGAGTCATGTGTTG+TGG - Chr3:81291196-81291215 None:intergenic 40.0%
TAGTTTCTACCACCAGTGTA+AGG - Chr3:81291417-81291436 None:intergenic 40.0%
TATCTTGGGAACTCTCTTCT+TGG + Chr3:81291475-81291494 MsG0380016270.01.T01:CDS 40.0%
TCCAATGAGTGAACAGAACA+AGG + Chr3:81291674-81291693 MsG0380016270.01.T01:CDS 40.0%
TGGTTGAGGAGAAGAAATTC+TGG + Chr3:81291889-81291908 MsG0380016270.01.T01:CDS 40.0%
TTTCCCAATTCCTTCCATCA+AGG - Chr3:81291643-81291662 None:intergenic 40.0%
! ATGAAGGTGTATAGGGAAGA+AGG + Chr3:81291948-81291967 MsG0380016270.01.T01:CDS 40.0%
! GGTTTGATGACAGAGTTCTT+AGG + Chr3:81292018-81292037 MsG0380016270.01.T01:CDS 40.0%
! TGAAGGTGTATAGGGAAGAA+GGG + Chr3:81291949-81291968 MsG0380016270.01.T01:CDS 40.0%
!! ATGGATTTGGTGGAAGATGA+TGG + Chr3:81291711-81291730 MsG0380016270.01.T01:CDS 40.0%
!! GGAGAAGAAATTCTGGGATT+TGG + Chr3:81291896-81291915 MsG0380016270.01.T01:CDS 40.0%
!! GGATTTGGTGAGAGAATTGA+AGG + Chr3:81291911-81291930 MsG0380016270.01.T01:CDS 40.0%
!! GTGTTTGATGATGTGGTGAA+CGG - Chr3:81291358-81291377 None:intergenic 40.0%
!! TGATTCTTTGTTGGCCTTGA+TGG + Chr3:81291626-81291645 MsG0380016270.01.T01:CDS 40.0%
!! TGGATTTGGTGGAAGATGAT+GGG + Chr3:81291712-81291731 MsG0380016270.01.T01:CDS 40.0%
!! TTTTGGAGAAGTGGTGGAAT+TGG + Chr3:81291806-81291825 MsG0380016270.01.T01:CDS 40.0%
!!! AAGAGGTGTTTGTGTTTTGG+AGG - Chr3:81291219-81291238 None:intergenic 40.0%
!!! AGAGGTGTTTGTGTTTTGGA+GGG - Chr3:81291218-81291237 None:intergenic 40.0%
!!! GTCAAGAGGTGTTTGTGTTT+TGG - Chr3:81291222-81291241 None:intergenic 40.0%
!!! TTGTCTTGGTTTTGGAGAAG+TGG + Chr3:81291797-81291816 MsG0380016270.01.T01:CDS 40.0%
AACTCTCTTCTTGGGTTCGA+TGG + Chr3:81291484-81291503 MsG0380016270.01.T01:CDS 45.0%
ACAGAAGAACCGAGTCTGAT+CGG + Chr3:81291997-81292016 MsG0380016270.01.T01:CDS 45.0%
ACCACCAGTGTAAGGGTAAA+CGG - Chr3:81291409-81291428 None:intergenic 45.0%
AGGGAGAAACTTGGTTGTCT+TGG + Chr3:81291783-81291802 MsG0380016270.01.T01:CDS 45.0%
CAGAGGAAAGAAGAGTCAAG+AGG - Chr3:81291236-81291255 None:intergenic 45.0%
CTCTTGACTCTTCTTTCCTC+TGG + Chr3:81291234-81291253 MsG0380016270.01.T01:CDS 45.0%
GTCATCAAACCGATCAGACT+CGG - Chr3:81292009-81292028 None:intergenic 45.0%
TTTAGGGAGAGGGAGAAACT+TGG + Chr3:81291774-81291793 MsG0380016270.01.T01:CDS 45.0%
! ACTCTTCTTTCCTCTGGAGA+CGG + Chr3:81291240-81291259 MsG0380016270.01.T01:CDS 45.0%
! AGTTGTGAGTGGTTTGGAGA+CGG - Chr3:81291308-81291327 None:intergenic 45.0%
! TGGCCTTGATGGAAGGAATT+GGG + Chr3:81291637-81291656 MsG0380016270.01.T01:CDS 45.0%
! TGGGAGGATGAAGGTGTATA+GGG + Chr3:81291941-81291960 MsG0380016270.01.T01:CDS 45.0%
! TTGGGAGGATGAAGGTGTAT+AGG + Chr3:81291940-81291959 MsG0380016270.01.T01:CDS 45.0%
!! AGGTACCGTGTTTGATGATG+TGG - Chr3:81291365-81291384 None:intergenic 45.0%
!! CTCTGAAGTTTGAGAGGTTG+AGG - Chr3:81291440-81291459 None:intergenic 45.0%
!! CTGTGTGCTTCTAGAACTCT+TGG + Chr3:81291531-81291550 MsG0380016270.01.T01:CDS 45.0%
!! GAGTTCTAGAAGCACACAGA+AGG - Chr3:81291530-81291549 None:intergenic 45.0%
!! GATGATGATGATGATGGAGG+TGG + Chr3:81291869-81291888 MsG0380016270.01.T01:CDS 45.0%
!! GGATTTGGTGGAAGATGATG+GGG + Chr3:81291713-81291732 MsG0380016270.01.T01:CDS 45.0%
!! TCTTTGTTGGCCTTGATGGA+AGG + Chr3:81291630-81291649 MsG0380016270.01.T01:CDS 45.0%
!! TTGGCCTTGATGGAAGGAAT+TGG + Chr3:81291636-81291655 MsG0380016270.01.T01:CDS 45.0%
!!! TCTTGGTTTTGGAGAAGTGG+TGG + Chr3:81291800-81291819 MsG0380016270.01.T01:CDS 45.0%
AGAAGGGAGGCTTAGCAGTA+CGG + Chr3:81291965-81291984 MsG0380016270.01.T01:CDS 50.0%
AGGTGTATAGGGAAGAAGGG+AGG + Chr3:81291952-81291971 MsG0380016270.01.T01:CDS 50.0%
AGTCATGTGTTGTGGCACGT+AGG - Chr3:81291188-81291207 None:intergenic 50.0%
CTCTCCGTTTACCCTTACAC+TGG + Chr3:81291402-81291421 MsG0380016270.01.T01:CDS 50.0%
CTGCTGAGTTGTGAGTGGTT+TGG - Chr3:81291314-81291333 None:intergenic 50.0%
GGAAAAGGTTGGGAGGATGA+AGG + Chr3:81291932-81291951 MsG0380016270.01.T01:CDS 50.0%
GGTAAACGGAGAGCTGATCA+CGG - Chr3:81291395-81291414 None:intergenic 50.0%
GGTGAAACGACGTCAGAGAA+AGG + Chr3:81291564-81291583 MsG0380016270.01.T01:CDS 50.0%
TCCGTTTACCCTTACACTGG+TGG + Chr3:81291405-81291424 MsG0380016270.01.T01:CDS 50.0%
TCTCTGACGTCGTTTCACCA+AGG - Chr3:81291563-81291582 None:intergenic 50.0%
TTCTTGGGTTCGATGGTACG+CGG + Chr3:81291491-81291510 MsG0380016270.01.T01:CDS 50.0%
!! GATGATGATGGAGGTGGTTG+AGG + Chr3:81291875-81291894 MsG0380016270.01.T01:CDS 50.0%
!! GGTGGAAGATGATGGGGTTA+TGG + Chr3:81291719-81291738 MsG0380016270.01.T01:CDS 50.0%
AAACGGAGAGCTGATCACGG+AGG - Chr3:81291392-81291411 None:intergenic 55.0%
CATGTGTTGTGGCACGTAGG+AGG - Chr3:81291185-81291204 None:intergenic 55.0%
GAGCTGATCACGGAGGATGA+AGG - Chr3:81291385-81291404 None:intergenic 55.0%
GGCTACTGCTGAGTTGTGAG+TGG - Chr3:81291319-81291338 None:intergenic 55.0%
AAGCTCCACCGCAGAGGATG+CGG - Chr3:81291277-81291296 None:intergenic 60.0%
CATGAGAAGCTCCACCGCAG+AGG - Chr3:81291283-81291302 None:intergenic 60.0%
CTCTGCGGTGGAGCTTCTCA+TGG + Chr3:81291281-81291300 MsG0380016270.01.T01:CDS 60.0%
ACGTGCCACCGCATCCTCTG+CGG + Chr3:81291266-81291285 MsG0380016270.01.T01:CDS 65.0%
GGCACGTGAACCGTCTCCAG+AGG - Chr3:81291253-81291272 None:intergenic 65.0%
CTCCACCGCAGAGGATGCGG+TGG - Chr3:81291274-81291293 None:intergenic 70.0%
TGCCACCGCATCCTCTGCGG+TGG + Chr3:81291269-81291288 MsG0380016270.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 81291123 81292088 81291123 ID=MsG0380016270.01;Name=MsG0380016270.01
Chr3 mRNA 81291123 81292088 81291123 ID=MsG0380016270.01.T01;Parent=MsG0380016270.01;Name=MsG0380016270.01.T01;_AED=0.09;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|321
Chr3 exon 81291123 81292088 81291123 ID=MsG0380016270.01.T01:exon:11479;Parent=MsG0380016270.01.T01
Chr3 CDS 81291123 81292088 81291123 ID=MsG0380016270.01.T01:cds;Parent=MsG0380016270.01.T01
Gene Sequence

>MsG0380016270.01.T01

ATGAAGGATAAAGCATCACAAAGCAAAGCTGCAATTTTATCAAAACGCAAAACTCTCTTCCTCCTACGTGCCACAACACATGACTCTTTCAACCCTCCAAAACACAAACACCTCTTGACTCTTCTTTCCTCTGGAGACGGTTCACGTGCCACCGCATCCTCTGCGGTGGAGCTTCTCATGGACCGTCTCCAAACCACTCACAACTCAGCAGTAGCCCTTAAATGTTTAATCACCGTTCACCACATCATCAAACACGGTACCTTCATCCTCCGTGATCAGCTCTCCGTTTACCCTTACACTGGTGGTAGAAACTACCTCAACCTCTCAAACTTCAGAGACAAAACAAGTTCAATATCTTGGGAACTCTCTTCTTGGGTTCGATGGTACGCGGAATACATTGAAAACCTTCTGTGTGCTTCTAGAACTCTTGGTTTCTTCCTTGGTGAAACGACGTCAGAGAAAGGAGTTTCTTATCTTACCAATAGTGATCTGTTAAGAGAAACTGATTCTTTGTTGGCCTTGATGGAAGGAATTGGGAAAAGACCTAATACTCCAATGAGTGAACAGAACAAGGTGGTTGTTGAGATAATGGATTTGGTGGAAGATGATGGGGTTATGGTGATGAATGAAGTTCTGGTTAGAGTTAAAGAATTTAGGGAGAGGGAGAAACTTGGTTGTCTTGGTTTTGGAGAAGTGGTGGAATTGGTTTGTGTTTTGAAGAGATTGGAAATATGCAGAGAGAGAATGATGATGATGATGATGGAGGTGGTTGAGGAGAAGAAATTCTGGGATTTGGTGAGAGAATTGAAGGAAAAGGTTGGGAGGATGAAGGTGTATAGGGAAGAAGGGAGGCTTAGCAGTACGGTGACAAAAGACAGAAGAACCGAGTCTGATCGGTTTGATGACAGAGTTCTTAGGTCTGTTGATTCCATTAGGTTTCCTTCTTCAAGGTTCTTGTATATGTGA

Protein sequence

>MsG0380016270.01.T01

MKDKASQSKAAILSKRKTLFLLRATTHDSFNPPKHKHLLTLLSSGDGSRATASSAVELLMDRLQTTHNSAVALKCLITVHHIIKHGTFILRDQLSVYPYTGGRNYLNLSNFRDKTSSISWELSSWVRWYAEYIENLLCASRTLGFFLGETTSEKGVSYLTNSDLLRETDSLLALMEGIGKRPNTPMSEQNKVVVEIMDLVEDDGVMVMNEVLVRVKEFREREKLGCLGFGEVVELVCVLKRLEICRERMMMMMMEVVEEKKFWDLVRELKEKVGRMKVYREEGRLSSTVTKDRRTESDRFDDRVLRSVDSIRFPSSRFLYM*