AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038935.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038935.01.T01 MTR_7g065630 91.667 120 10 0 31 150 120 239 4.11e-75 224
MsG0780038935.01.T01 MTR_7g065680 76.667 120 28 0 31 150 102 221 9.88e-54 169
MsG0780038935.01.T01 MTR_7g065710 72.115 104 29 0 36 139 104 207 1.90e-49 158
MsG0780038935.01.T01 MTR_7g065700 71.560 109 31 0 31 139 102 210 1.97e-44 145
MsG0780038935.01.T01 MTR_7g065590 58.197 122 47 1 31 148 102 223 3.21e-44 145
MsG0780038935.01.T01 MTR_7g065600 59.350 123 46 1 30 148 101 223 1.14e-42 141
MsG0780038935.01.T01 MTR_7g065660 57.258 124 49 1 31 150 102 225 1.97e-42 140
MsG0780038935.01.T01 MTR_7g065230 61.345 119 45 1 30 148 101 218 2.12e-41 137
MsG0780038935.01.T01 MTR_7g065290 56.667 120 48 1 33 148 104 223 1.04e-39 133
MsG0780038935.01.T01 MTR_7g065740 54.400 125 52 2 31 150 102 226 1.95e-39 133
MsG0780038935.01.T01 MTR_7g065720 58.678 121 45 2 33 148 104 224 3.34e-37 127
MsG0780038935.01.T01 MTR_7g065750 62.264 106 36 1 49 150 121 226 6.01e-37 126
MsG0780038935.01.T01 MTR_4g019790 53.279 122 49 2 33 150 108 225 1.84e-36 125
MsG0780038935.01.T01 MTR_7g065265 53.333 120 52 1 33 148 104 223 1.76e-34 120
MsG0780038935.01.T01 MTR_7g065260 64.835 91 27 2 63 148 141 231 7.68e-34 119
MsG0780038935.01.T01 MTR_7g065270 50.000 120 56 1 33 148 104 223 6.06e-33 116
MsG0780038935.01.T01 MTR_4g019780 52.137 117 50 3 31 142 103 218 2.85e-32 114
MsG0780038935.01.T01 MTR_7g065640 50.833 120 45 1 31 150 102 207 7.20e-32 113
MsG0780038935.01.T01 MTR_6g080440 34.921 126 73 4 31 148 98 222 2.62e-16 73.2
MsG0780038935.01.T01 MTR_8g087410 30.172 116 75 3 40 150 110 224 5.75e-15 69.3
MsG0780038935.01.T01 MTR_1g090070 35.849 106 61 2 51 149 124 229 2.06e-14 68.2
MsG0780038935.01.T01 MTR_5g040430 33.019 106 61 2 45 140 116 221 6.49e-12 61.2
MsG0780038935.01.T01 MTR_1g090150 33.333 114 69 3 43 149 108 221 1.07e-11 60.8
MsG0780038935.01.T01 MTR_1g090060 30.769 104 65 2 51 147 117 220 1.95e-11 60.1
MsG0780038935.01.T01 MTR_1g090100 32.381 105 64 2 51 148 116 220 4.76e-11 58.9
MsG0780038935.01.T01 MTR_8g087425 32.000 75 47 1 75 145 144 218 5.17e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038935.01.T01 AT3G09270 44.118 102 52 2 52 148 123 224 5.94e-18 77.4
MsG0780038935.01.T01 AT2G29420 33.036 112 70 2 43 149 115 226 9.67e-15 68.9
MsG0780038935.01.T01 AT2G29450 28.226 124 83 3 31 148 101 224 4.29e-11 58.9

Find 24 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATAATTTCCTTGACTAT+TGG 0.252367 7:-55557429 None:intergenic
ACTGCAATTCTGCTACTTCT+TGG 0.255928 7:-55557347 None:intergenic
TCTGCTACTTCTTGGAATAA+AGG 0.260381 7:-55557339 None:intergenic
GAATTGAAGGGAAAATTCTT+TGG 0.311076 7:+55557273 MsG0780038935.01.T01:CDS
CTGCTACTTCTTGGAATAAA+GGG 0.317178 7:-55557338 None:intergenic
TTACTCCATTTGTATAGCTT+TGG 0.321457 7:-55557390 None:intergenic
TTTCTCGCGTTCTTTCTTAT+CGG 0.326801 7:-55557208 None:intergenic
TTCTTTGGAGGAGAAGAGAT+TGG 0.382580 7:+55557288 MsG0780038935.01.T01:CDS
TTCTCGCGTTCTTTCTTATC+GGG 0.402746 7:-55557207 None:intergenic
AGCTAGCGACGAACTATTGA+AGG 0.446209 7:+55557230 MsG0780038935.01.T01:CDS
ATTTCTTGAGAATGAATTGA+AGG 0.482186 7:+55557260 MsG0780038935.01.T01:CDS
GTGGAGAAAGAGATGGGATG+TGG 0.484017 7:+55554159 MsG0780038935.01.T01:CDS
TTGAAGGGAAAATTCTTTGG+AGG 0.490147 7:+55557276 MsG0780038935.01.T01:CDS
ATGAAAGTGGAGAAAGAGAT+GGG 0.494887 7:+55554153 MsG0780038935.01.T01:CDS
AATGAAAGTGGAGAAAGAGA+TGG 0.514963 7:+55554152 None:intergenic
AATTTCCAAAGCTATACAAA+TGG 0.517213 7:+55557385 MsG0780038935.01.T01:CDS
TTTCTTGAGAATGAATTGAA+GGG 0.518621 7:+55557261 MsG0780038935.01.T01:CDS
TAATTTCCTTGACTATTGGA+TGG 0.528427 7:-55557425 None:intergenic
TAAAGTGCAAGAAATGAAAG+TGG 0.536655 7:+55554140 None:intergenic
TGTATGAAACAATGAACAAA+TGG 0.550172 7:+55554193 MsG0780038935.01.T01:CDS
ATCAGTGTGTGGCTGCTGCA+TGG 0.567781 7:+55557169 MsG0780038935.01.T01:intron
TGTGGCTGCTGCATGGATGT+CGG 0.602873 7:+55557176 MsG0780038935.01.T01:CDS
TAACAACCATCCAATAGTCA+AGG 0.609813 7:+55557419 MsG0780038935.01.T01:CDS
AGAATTGCAGTTATTCACAA+AGG 0.625696 7:+55557359 MsG0780038935.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTCAGAATTTTTAA+AGG + Chr7:55554904-55554923 MsG0780038935.01.T01:intron 10.0%
!!! TTGATTTTTTTTATGATTTT+TGG + Chr7:55556012-55556031 MsG0780038935.01.T01:intron 10.0%
!! AAAAAAAAGTAAAAATTCGT+TGG + Chr7:55555010-55555029 MsG0780038935.01.T01:intron 15.0%
!! AAAAAAAGTAAAAATTCGTT+GGG + Chr7:55555011-55555030 MsG0780038935.01.T01:intron 15.0%
!! AAAATTGAATTGAAATTCTT+TGG - Chr7:55554378-55554397 None:intergenic 15.0%
!! ATTTCAAAAAAATATCAGTT+AGG - Chr7:55556709-55556728 None:intergenic 15.0%
!!! AAAAGTACAAAGAAAATTAT+AGG + Chr7:55554881-55554900 MsG0780038935.01.T01:intron 15.0%
!!! AAGCATTTAAAACAAAAATT+GGG + Chr7:55554429-55554448 MsG0780038935.01.T01:intron 15.0%
!!! ACAATTTTTAGAATTTAAAC+AGG + Chr7:55556469-55556488 MsG0780038935.01.T01:intron 15.0%
!!! AGAATTAAACAAGTATTTTT+AGG + Chr7:55556913-55556932 MsG0780038935.01.T01:intron 15.0%
!!! CAATTTTTAGAATTTAAACA+GGG + Chr7:55556470-55556489 MsG0780038935.01.T01:intron 15.0%
!!! TTTTAAAATGGATTTTTAAC+AGG + Chr7:55556402-55556421 MsG0780038935.01.T01:intron 15.0%
!! ATAAGTTAAAAAACACATTC+AGG + Chr7:55555089-55555108 MsG0780038935.01.T01:intron 20.0%
!! ATTTATTCACAAACAAAACT+TGG + Chr7:55554465-55554484 MsG0780038935.01.T01:intron 20.0%
!! ATTTGCAAAATTCACATAAA+AGG - Chr7:55556819-55556838 None:intergenic 20.0%
!! CTTCAAATGCAATTTAAAAA+TGG + Chr7:55556548-55556567 MsG0780038935.01.T01:intron 20.0%
!! TATAATCCTTATACTTCAAA+GGG + Chr7:55554349-55554368 MsG0780038935.01.T01:intron 20.0%
!! TTTGCAAAATTCACATAAAA+GGG - Chr7:55556818-55556837 None:intergenic 20.0%
!!! ACTCAGATGAAATTTTAAAA+TGG + Chr7:55556390-55556409 MsG0780038935.01.T01:intron 20.0%
!!! CAAGCATTTAAAACAAAAAT+TGG + Chr7:55554428-55554447 MsG0780038935.01.T01:intron 20.0%
!!! CAATTTTTGTTTTAAATGCT+TGG - Chr7:55554430-55554449 None:intergenic 20.0%
!!! TATTGTTTTGGTAAATTTTG+AGG - Chr7:55555329-55555348 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + Chr7:55556926-55556945 MsG0780038935.01.T01:intron 20.0%
!!! TTTAAAAATGGATTTTGACA+TGG + Chr7:55556560-55556579 MsG0780038935.01.T01:intron 20.0%
! AATTTCCAAAGCTATACAAA+TGG + Chr7:55557385-55557404 MsG0780038935.01.T01:CDS 25.0%
! AGCAAAAACAAATGTGAAAT+AGG + Chr7:55554287-55554306 MsG0780038935.01.T01:intron 25.0%
! ATTTCTTGAGAATGAATTGA+AGG + Chr7:55557260-55557279 MsG0780038935.01.T01:CDS 25.0%
! CTATAATCCTTATACTTCAA+AGG + Chr7:55554348-55554367 MsG0780038935.01.T01:intron 25.0%
! TCACTCAAAACAAATGTAAA+AGG + Chr7:55554725-55554744 MsG0780038935.01.T01:intron 25.0%
! TCTTAAAGACCAATAACATT+TGG + Chr7:55556145-55556164 MsG0780038935.01.T01:intron 25.0%
! TCTTGGTTCATATCAAAAAA+CGG + Chr7:55555398-55555417 MsG0780038935.01.T01:intron 25.0%
! TGTATGAAACAATGAACAAA+TGG + Chr7:55554193-55554212 MsG0780038935.01.T01:CDS 25.0%
! TTACCACATCATCTATAAAT+GGG - Chr7:55556076-55556095 None:intergenic 25.0%
! TTATACATGAATACTCTTCA+TGG + Chr7:55556979-55556998 MsG0780038935.01.T01:intron 25.0%
! TTGAAACTTAACGTAAAATG+AGG + Chr7:55556276-55556295 MsG0780038935.01.T01:intron 25.0%
! TTTACCACATCATCTATAAA+TGG - Chr7:55556077-55556096 None:intergenic 25.0%
! TTTCTTGAGAATGAATTGAA+GGG + Chr7:55557261-55557280 MsG0780038935.01.T01:CDS 25.0%
!! ATTTTCACAAAGAGGATTAA+AGG + Chr7:55554393-55554412 MsG0780038935.01.T01:intron 25.0%
!! GTAAAAATTTTCACGTTTAG+AGG - Chr7:55555267-55555286 None:intergenic 25.0%
!! TCAATTCAATTTTCACAAAG+AGG + Chr7:55554385-55554404 MsG0780038935.01.T01:intron 25.0%
!! TCATTGTTATACCCTAATTT+TGG - Chr7:55556940-55556959 None:intergenic 25.0%
!! TGTTGTTGATCTGAAATATT+TGG - Chr7:55554526-55554545 None:intergenic 25.0%
!!! ACTGAAAGAAATTTTAACAC+AGG + Chr7:55556640-55556659 MsG0780038935.01.T01:intron 25.0%
!!! CATTCAACTCATTTTAATCT+TGG - Chr7:55556777-55556796 None:intergenic 25.0%
!!! CTGGAGAATTATTTTTACTT+TGG - Chr7:55554817-55554836 None:intergenic 25.0%
!!! CTTTGAAGTATAAGGATTAT+AGG - Chr7:55554350-55554369 None:intergenic 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + Chr7:55556925-55556944 MsG0780038935.01.T01:intron 25.0%
AAAAAATCATCACCAATGCA+AGG + Chr7:55554313-55554332 MsG0780038935.01.T01:intron 30.0%
AGAATTGCAGTTATTCACAA+AGG + Chr7:55557359-55557378 MsG0780038935.01.T01:CDS 30.0%
ATTAGGGTATAACAATGACA+AGG + Chr7:55556942-55556961 MsG0780038935.01.T01:intron 30.0%
CAAATGTAAAAGGAATCACA+AGG + Chr7:55554735-55554754 MsG0780038935.01.T01:intron 30.0%
CAAGATTGATCAAGAAATAC+TGG - Chr7:55554836-55554855 None:intergenic 30.0%
CTTGGTTCATATCAAAAAAC+GGG + Chr7:55555399-55555418 MsG0780038935.01.T01:intron 30.0%
GAATTGAAGGGAAAATTCTT+TGG + Chr7:55557273-55557292 MsG0780038935.01.T01:CDS 30.0%
TAATTTCCTTGACTATTGGA+TGG - Chr7:55557428-55557447 None:intergenic 30.0%
TATCTTGGCTCATGAATAAT+TGG - Chr7:55554578-55554597 None:intergenic 30.0%
TATTCATGAGCCAAGATATT+GGG + Chr7:55554580-55554599 MsG0780038935.01.T01:intron 30.0%
TGGTAAATGAATGAAAAGTG+TGG + Chr7:55556032-55556051 MsG0780038935.01.T01:intron 30.0%
TGGTTAGAGAAGTTAGTTAT+GGG + Chr7:55555944-55555963 MsG0780038935.01.T01:intron 30.0%
TGTAAAAGATCACAAGAAAC+AGG + Chr7:55554696-55554715 MsG0780038935.01.T01:intron 30.0%
TGTTCGATTGTGATTGAATT+CGG + Chr7:55555676-55555695 MsG0780038935.01.T01:intron 30.0%
TTACTCCATTTGTATAGCTT+TGG - Chr7:55557393-55557412 None:intergenic 30.0%
TTATTCATGAGCCAAGATAT+TGG + Chr7:55554579-55554598 MsG0780038935.01.T01:intron 30.0%
TTTGACATGAGATTGAAACA+AGG + Chr7:55556733-55556752 MsG0780038935.01.T01:intron 30.0%
! ATGCAAATAATAAAAGTGCG+AGG + Chr7:55556210-55556229 MsG0780038935.01.T01:intron 30.0%
! GATTAAAATGAGTTGAATGC+AGG + Chr7:55556778-55556797 MsG0780038935.01.T01:intron 30.0%
! GCAAATTGTTGATCTTTTGA+AGG - Chr7:55557453-55557472 None:intergenic 30.0%
! TAATTTGTGAAATCAGTGTG+TGG + Chr7:55557158-55557177 MsG0780038935.01.T01:intron 30.0%
! TGCATGTTTGTGTATTGTTT+TGG - Chr7:55555341-55555360 None:intergenic 30.0%
! TTTTAGTCAATTTAGCCCTA+GGG - Chr7:55556681-55556700 None:intergenic 30.0%
!! GAAGGTTGTTGAATTTGTTA+TGG + Chr7:55555857-55555876 MsG0780038935.01.T01:intron 30.0%
!! TTTTTAGTCAATTTAGCCCT+AGG - Chr7:55556682-55556701 None:intergenic 30.0%
!!! TGCATTGGTGATGATTTTTT+AGG - Chr7:55554313-55554332 None:intergenic 30.0%
AAAAGACTAAAATGCCCCTA+GGG + Chr7:55556505-55556524 MsG0780038935.01.T01:intron 35.0%
AAACACGTTTGAGAGAAAGA+GGG - Chr7:55555128-55555147 None:intergenic 35.0%
AAATGACTAAAATGCCCCTA+GGG + Chr7:55556663-55556682 MsG0780038935.01.T01:intron 35.0%
AACATATCGAAGCAAAGAAG+CGG - Chr7:55555513-55555532 None:intergenic 35.0%
ACAGATGTCATAATAGACAC+TGG - Chr7:55557076-55557095 None:intergenic 35.0%
ACCAATAACATTTGGACACA+TGG + Chr7:55556153-55556172 MsG0780038935.01.T01:intron 35.0%
ACGTGGGAAAAAAGAAAAGA+GGG + Chr7:55555980-55555999 MsG0780038935.01.T01:intron 35.0%
ATAGATGATGTGGTAAAGCT+TGG + Chr7:55556080-55556099 MsG0780038935.01.T01:intron 35.0%
ATCTTTAGTGAAAGAGGGAA+AGG - Chr7:55555151-55555170 None:intergenic 35.0%
ATGAAAGTGGAGAAAGAGAT+GGG + Chr7:55554153-55554172 MsG0780038935.01.T01:CDS 35.0%
ATTCATGAGCCAAGATATTG+GGG + Chr7:55554581-55554600 MsG0780038935.01.T01:intron 35.0%
ATTCGAAGATTCGTGCAATT+CGG + Chr7:55555580-55555599 MsG0780038935.01.T01:intron 35.0%
CAAACAAAACTTGGAACACA+AGG + Chr7:55554474-55554493 MsG0780038935.01.T01:intron 35.0%
GGCATAATTTCCTTGACTAT+TGG - Chr7:55557432-55557451 None:intergenic 35.0%
GGTTAGAGAAGTTAGTTATG+GGG + Chr7:55555945-55555964 MsG0780038935.01.T01:intron 35.0%
GTGGTTAGAGAAGTTAGTTA+TGG + Chr7:55555943-55555962 MsG0780038935.01.T01:intron 35.0%
TAACAACCATCCAATAGTCA+AGG + Chr7:55557419-55557438 MsG0780038935.01.T01:CDS 35.0%
TCATCGCATACAAAGCTAAT+TGG + Chr7:55555448-55555467 MsG0780038935.01.T01:intron 35.0%
TGACCCATTTATAGATGATG+TGG + Chr7:55556070-55556089 MsG0780038935.01.T01:intron 35.0%
TTGAAGGGAAAATTCTTTGG+AGG + Chr7:55557276-55557295 MsG0780038935.01.T01:CDS 35.0%
TTGAGGTCGAATTCATATAG+AGG - Chr7:55555312-55555331 None:intergenic 35.0%
TTTAGTCAATTTAGCCCTAG+GGG - Chr7:55556680-55556699 None:intergenic 35.0%
TTTCTCGCGTTCTTTCTTAT+CGG - Chr7:55557211-55557230 None:intergenic 35.0%
! CCTTCTTCTTTTTCTCTATC+CGG + Chr7:55555626-55555645 MsG0780038935.01.T01:intron 35.0%
! CTGCTACTTCTTGGAATAAA+GGG - Chr7:55557341-55557360 None:intergenic 35.0%
! TCTGCTACTTCTTGGAATAA+AGG - Chr7:55557342-55557361 None:intergenic 35.0%
! TTGAAGTTTGCGTTTGTTGA+TGG + Chr7:55555752-55555771 MsG0780038935.01.T01:intron 35.0%
!! AAAGGACTTTTTGAAAGTGC+AGG + Chr7:55554922-55554941 MsG0780038935.01.T01:intron 35.0%
!! AAGGACTTTTTGAAAGTGCA+GGG + Chr7:55554923-55554942 MsG0780038935.01.T01:intron 35.0%
!! CATTTTAACCCCCAATATCT+TGG - Chr7:55554593-55554612 None:intergenic 35.0%
!! GGTTGTTGAATTTGTTATGG+TGG + Chr7:55555860-55555879 MsG0780038935.01.T01:intron 35.0%
!! TGGAAACCCTTTGAAGTATA+AGG - Chr7:55554358-55554377 None:intergenic 35.0%
!! TGTTGAATTTGTTATGGTGG+CGG + Chr7:55555863-55555882 MsG0780038935.01.T01:intron 35.0%
!!! TTAGAGGAGTTTTGAAACTC+CGG - Chr7:55555251-55555270 None:intergenic 35.0%
AAAGACTAAAATGCCCCTAG+GGG + Chr7:55556506-55556525 MsG0780038935.01.T01:intron 40.0%
AAGAAACGCTACCTTGAGTT+CGG + Chr7:55555474-55555493 MsG0780038935.01.T01:intron 40.0%
ACAAAATCAGTACAACACGC+AGG + Chr7:55554959-55554978 MsG0780038935.01.T01:intron 40.0%
ACATATCGAAGCAAAGAAGC+GGG - Chr7:55555512-55555531 None:intergenic 40.0%
ACCAATTGGAATGAGACATG+TGG + Chr7:55556103-55556122 MsG0780038935.01.T01:intron 40.0%
AGCGATTTCGAAACAGATTC+CGG - Chr7:55555648-55555667 None:intergenic 40.0%
CAAAATCAGTACAACACGCA+GGG + Chr7:55554960-55554979 MsG0780038935.01.T01:intron 40.0%
CACGTGGGAAAAAAGAAAAG+AGG + Chr7:55555979-55555998 MsG0780038935.01.T01:intron 40.0%
CCGGATAGAGAAAAAGAAGA+AGG - Chr7:55555629-55555648 None:intergenic 40.0%
GAAAAGACTAAAATGCCCCT+AGG + Chr7:55556504-55556523 MsG0780038935.01.T01:intron 40.0%
GAAACACGTTTGAGAGAAAG+AGG - Chr7:55555129-55555148 None:intergenic 40.0%
GAAATGACTAAAATGCCCCT+AGG + Chr7:55556662-55556681 MsG0780038935.01.T01:intron 40.0%
GAGAAAGAGGGAAAGAATGA+AGG - Chr7:55555116-55555135 None:intergenic 40.0%
GCACGAATCTTCGAATCAAA+AGG - Chr7:55555576-55555595 None:intergenic 40.0%
GCCATGTGTCCAAATGTTAT+TGG - Chr7:55556157-55556176 None:intergenic 40.0%
GCTGCATCTTTAGTGAAAGA+GGG - Chr7:55555156-55555175 None:intergenic 40.0%
GGTCGAATTCATATAGAGGA+AGG - Chr7:55555308-55555327 None:intergenic 40.0%
GTCATATTCAAGCCTTGCAT+TGG - Chr7:55554328-55554347 None:intergenic 40.0%
TCGCATACAAAGCTAATTGG+TGG + Chr7:55555451-55555470 MsG0780038935.01.T01:intron 40.0%
TTCATATAGAGGAAGGAGAG+AGG - Chr7:55555301-55555320 None:intergenic 40.0%
TTCATGAGCCAAGATATTGG+GGG + Chr7:55554582-55554601 MsG0780038935.01.T01:intron 40.0%
TTCTCGCGTTCTTTCTTATC+GGG - Chr7:55557210-55557229 None:intergenic 40.0%
! AAGTTTGCGTTTGTTGATGG+AGG + Chr7:55555755-55555774 MsG0780038935.01.T01:intron 40.0%
! ACTGCAATTCTGCTACTTCT+TGG - Chr7:55557350-55557369 None:intergenic 40.0%
! CATGGGTTAATGGGTCAAAT+AGG + Chr7:55555058-55555077 MsG0780038935.01.T01:intron 40.0%
! CTCTTTTCTTTTTTCCCACG+TGG - Chr7:55555981-55556000 None:intergenic 40.0%
! GGTGCTTGAAGAGCAATTTT+GGG - Chr7:55554557-55554576 None:intergenic 40.0%
! GGTTAATGGGTCAAATAGGA+GGG + Chr7:55555062-55555081 MsG0780038935.01.T01:intron 40.0%
! GTGCTTGAAGAGCAATTTTG+GGG - Chr7:55554556-55554575 None:intergenic 40.0%
! TGGTGCTTGAAGAGCAATTT+TGG - Chr7:55554558-55554577 None:intergenic 40.0%
! TTCTTTGGAGGAGAAGAGAT+TGG + Chr7:55557288-55557307 MsG0780038935.01.T01:CDS 40.0%
! TTGAGTCAATTTTGCCCCTA+GGG - Chr7:55556523-55556542 None:intergenic 40.0%
! TTTGAGTCAATTTTGCCCCT+AGG - Chr7:55556524-55556543 None:intergenic 40.0%
! TTTGTTGATGGAGGAGGTTA+CGG + Chr7:55555764-55555783 MsG0780038935.01.T01:intron 40.0%
!! AGGACTTTTTGAAAGTGCAG+GGG + Chr7:55554924-55554943 MsG0780038935.01.T01:intron 40.0%
!! GAAAAGAGAGTGTTGAATGG+TGG + Chr7:55555808-55555827 MsG0780038935.01.T01:intron 40.0%
!! GGAGAAAAGAGAGTGTTGAA+TGG + Chr7:55555805-55555824 MsG0780038935.01.T01:intron 40.0%
!! TTAGTCGTTTTAAGCCTCCA+GGG - Chr7:55556365-55556384 None:intergenic 40.0%
!! TTTAGTCGTTTTAAGCCTCC+AGG - Chr7:55556366-55556385 None:intergenic 40.0%
!!! GACACTTTTTCACGTGTTCT+TGG + Chr7:55555381-55555400 MsG0780038935.01.T01:intron 40.0%
AATTCGTTGGGCCTAAGAGT+TGG + Chr7:55555023-55555042 MsG0780038935.01.T01:intron 45.0%
ACATTTGGACACATGGCACT+TGG + Chr7:55556160-55556179 MsG0780038935.01.T01:intron 45.0%
ACCCTATCCTTCATCTTCTC+CGG + Chr7:55555179-55555198 MsG0780038935.01.T01:intron 45.0%
ACCGGAAAACAAGTTTCCAC+CGG - Chr7:55555201-55555220 None:intergenic 45.0%
ACCGGAGAAGATGAAGGATA+GGG - Chr7:55555183-55555202 None:intergenic 45.0%
AGCTAGCGACGAACTATTGA+AGG + Chr7:55557230-55557249 MsG0780038935.01.T01:CDS 45.0%
ATCAAAAGGAAGAAGCAGCG+TGG - Chr7:55555562-55555581 None:intergenic 45.0%
CAGTTCAAGCGGTGAAAAGA+AGG - Chr7:55555536-55555555 None:intergenic 45.0%
CGCTGCATCTTTAGTGAAAG+AGG - Chr7:55555157-55555176 None:intergenic 45.0%
CTAAGAGTTGGAGCAGGTAT+GGG + Chr7:55555035-55555054 MsG0780038935.01.T01:intron 45.0%
GATTGAGGTAGTTAGGGTGA+TGG + Chr7:55555832-55555851 MsG0780038935.01.T01:intron 45.0%
GCATCAACGCTTCAGATTGA+AGG + Chr7:55557028-55557047 MsG0780038935.01.T01:intron 45.0%
GCCACATGTCTCATTCCAAT+TGG - Chr7:55556107-55556126 None:intergenic 45.0%
GCGTGAAACAGAGGAGAAAT+TGG - Chr7:55555607-55555626 None:intergenic 45.0%
GCGTTCGTTGATGTTGTTGA+TGG + Chr7:55555712-55555731 MsG0780038935.01.T01:intron 45.0%
GGTGGTGATTGAGGTAGTTA+GGG + Chr7:55555826-55555845 MsG0780038935.01.T01:intron 45.0%
GTGGTAAAGCTTGGACCAAT+TGG + Chr7:55556089-55556108 MsG0780038935.01.T01:intron 45.0%
TTACGGTGGGGAAAGAAAGA+AGG + Chr7:55555781-55555800 MsG0780038935.01.T01:intron 45.0%
! AAGAAGAAGGCGTGAAACAG+AGG - Chr7:55555616-55555635 None:intergenic 45.0%
! AGGTATGGGCATGGGTTAAT+GGG + Chr7:55555049-55555068 MsG0780038935.01.T01:intron 45.0%
! CTTCAGATTGAAGGCATGTC+TGG + Chr7:55557037-55557056 MsG0780038935.01.T01:intron 45.0%
! GGGTTAATGGGTCAAATAGG+AGG + Chr7:55555061-55555080 MsG0780038935.01.T01:intron 45.0%
! GTGTTGAATGGTGGTGATTG+AGG + Chr7:55555817-55555836 MsG0780038935.01.T01:intron 45.0%
! GTTTGTTAGGGAGGAGGAAT+GGG + Chr7:55555890-55555909 MsG0780038935.01.T01:intron 45.0%
! TGAGTCAATTTTGCCCCTAG+GGG - Chr7:55556522-55556541 None:intergenic 45.0%
! TGGTGGTGATTGAGGTAGTT+AGG + Chr7:55555825-55555844 MsG0780038935.01.T01:intron 45.0%
! TTTGCGTTTGTTGATGGAGG+AGG + Chr7:55555758-55555777 MsG0780038935.01.T01:intron 45.0%
!! AGTTTGTTAGGGAGGAGGAA+TGG + Chr7:55555889-55555908 MsG0780038935.01.T01:intron 45.0%
!! GTAGTTAGGGTGATGGAAGA+AGG + Chr7:55555839-55555858 MsG0780038935.01.T01:intron 45.0%
!! GTTTGTTGTGGTGGTGGAAT+GGG + Chr7:55555921-55555940 MsG0780038935.01.T01:intron 45.0%
!! TAGTCGTTTTAAGCCTCCAG+GGG - Chr7:55556364-55556383 None:intergenic 45.0%
!! TCCGGTGGAAACTTGTTTTC+CGG + Chr7:55555197-55555216 MsG0780038935.01.T01:intron 45.0%
!! TGAATTTGTTATGGTGGCGG+AGG + Chr7:55555866-55555885 MsG0780038935.01.T01:intron 45.0%
!! TGGAAACTTGTTTTCCGGTG+CGG + Chr7:55555202-55555221 MsG0780038935.01.T01:intron 45.0%
!!! GTGGTTTTGGTTTGTTGTGG+TGG + Chr7:55555912-55555931 MsG0780038935.01.T01:intron 45.0%
!!! GTTTTGGTTTGTTGTGGTGG+TGG + Chr7:55555915-55555934 MsG0780038935.01.T01:intron 45.0%
!!! TGGGTGGTTTTGGTTTGTTG+TGG + Chr7:55555909-55555928 MsG0780038935.01.T01:intron 45.0%
ATCAGTACAACACGCAGGGA+AGG + Chr7:55554964-55554983 MsG0780038935.01.T01:intron 50.0%
CACCGGAGAAGATGAAGGAT+AGG - Chr7:55555184-55555203 None:intergenic 50.0%
CAGCGTGGAATCAGTTCAAG+CGG - Chr7:55555547-55555566 None:intergenic 50.0%
CCATACCTGCTCCAACTCTT+AGG - Chr7:55555037-55555056 None:intergenic 50.0%
CCTAAGAGTTGGAGCAGGTA+TGG + Chr7:55555034-55555053 MsG0780038935.01.T01:intron 50.0%
CGCTACCTTGAGTTCGGATT+TGG + Chr7:55555480-55555499 MsG0780038935.01.T01:intron 50.0%
CTATCCTTCATCTTCTCCGG+TGG + Chr7:55555182-55555201 MsG0780038935.01.T01:intron 50.0%
CTGCACCAAATCCGAACTCA+AGG - Chr7:55555488-55555507 None:intergenic 50.0%
GGAGAAGATGAAGGATAGGG+TGG - Chr7:55555180-55555199 None:intergenic 50.0%
GTGGAGAAAGAGATGGGATG+TGG + Chr7:55554159-55554178 MsG0780038935.01.T01:CDS 50.0%
GTTTCCACCGGAGAAGATGA+AGG - Chr7:55555189-55555208 None:intergenic 50.0%
TCAGTACAACACGCAGGGAA+GGG + Chr7:55554965-55554984 MsG0780038935.01.T01:intron 50.0%
TGAAATGACCAAAACGCCCC+TGG + Chr7:55556345-55556364 MsG0780038935.01.T01:intron 50.0%
TTGATGGAGGAGGTTACGGT+GGG + Chr7:55555768-55555787 MsG0780038935.01.T01:intron 50.0%
! CAGGTATGGGCATGGGTTAA+TGG + Chr7:55555048-55555067 MsG0780038935.01.T01:intron 50.0%
!! AAACTTGTTTTCCGGTGCGG+TGG + Chr7:55555205-55555224 MsG0780038935.01.T01:intron 50.0%
!! GGTTTGTTGTGGTGGTGGAA+TGG + Chr7:55555920-55555939 MsG0780038935.01.T01:intron 50.0%
!!! GGAGTTTTGAAACTCCGGTG+CGG - Chr7:55555246-55555265 None:intergenic 50.0%
AATGACCAAAACGCCCCTGG+AGG + Chr7:55556348-55556367 MsG0780038935.01.T01:intron 55.0%
AGTACAACACGCAGGGAAGG+GGG + Chr7:55554967-55554986 MsG0780038935.01.T01:intron 55.0%
AGTTGGAGCAGGTATGGGCA+TGG + Chr7:55555040-55555059 MsG0780038935.01.T01:intron 55.0%
ATCAGTGTGTGGCTGCTGCA+TGG + Chr7:55557169-55557188 MsG0780038935.01.T01:intron 55.0%
CAGTACAACACGCAGGGAAG+GGG + Chr7:55554966-55554985 MsG0780038935.01.T01:intron 55.0%
CGGTGGGGAAAGAAAGAAGG+AGG + Chr7:55555784-55555803 MsG0780038935.01.T01:intron 55.0%
GTTGGAGCAGGTATGGGCAT+GGG + Chr7:55555041-55555060 MsG0780038935.01.T01:intron 55.0%
TGATGGAGGAGGTTACGGTG+GGG + Chr7:55555769-55555788 MsG0780038935.01.T01:intron 55.0%
TGTGGCTGCTGCATGGATGT+CGG + Chr7:55557176-55557195 MsG0780038935.01.T01:CDS 55.0%
TGTTAGGGAGGAGGAATGGG+TGG + Chr7:55555893-55555912 MsG0780038935.01.T01:intron 55.0%
TTGGGCCTAAGAGTTGGAGC+AGG + Chr7:55555029-55555048 MsG0780038935.01.T01:intron 55.0%
! GGAGGAGGAATGGGTGGTTT+TGG + Chr7:55555899-55555918 MsG0780038935.01.T01:intron 55.0%
! GGGGGGTGTGAAAAGCATAC+TGG + Chr7:55554986-55555005 MsG0780038935.01.T01:intron 55.0%
! GTTGATGGAGGAGGTTACGG+TGG + Chr7:55555767-55555786 MsG0780038935.01.T01:intron 55.0%
!! GGAGGAGTTTGTTAGGGAGG+AGG + Chr7:55555884-55555903 MsG0780038935.01.T01:intron 55.0%
!! GGTGGCGGAGGAGTTTGTTA+GGG + Chr7:55555878-55555897 MsG0780038935.01.T01:intron 55.0%
!! TGGTGGCGGAGGAGTTTGTT+AGG + Chr7:55555877-55555896 MsG0780038935.01.T01:intron 55.0%
!! TGTTGTGGTGGTGGAATGGG+TGG + Chr7:55555924-55555943 MsG0780038935.01.T01:intron 55.0%
!!! GTTTTGAAACTCCGGTGCGG+TGG - Chr7:55555243-55555262 None:intergenic 55.0%
!!! TTAAGCCTCCAGGGGCGTTT+TGG - Chr7:55556356-55556375 None:intergenic 55.0%
GGGGAAGAAGAGAGCCACGT+GGG + Chr7:55555964-55555983 MsG0780038935.01.T01:intron 60.0%
GTACAACACGCAGGGAAGGG+GGG + Chr7:55554968-55554987 MsG0780038935.01.T01:intron 60.0%
TACAACACGCAGGGAAGGGG+GGG + Chr7:55554969-55554988 MsG0780038935.01.T01:intron 60.0%
TGGGGAAGAAGAGAGCCACG+TGG + Chr7:55555963-55555982 MsG0780038935.01.T01:intron 60.0%
! TTGTTTTCCGGTGCGGTGGC+CGG + Chr7:55555209-55555228 MsG0780038935.01.T01:intron 60.0%
!! GGCGGAGGAGTTTGTTAGGG+AGG + Chr7:55555881-55555900 MsG0780038935.01.T01:intron 60.0%
! TTTTCCGGTGCGGTGGCCGG+TGG + Chr7:55555212-55555231 MsG0780038935.01.T01:intron 70.0%
! CGGTGGTGGCACCACCGCAC+CGG + Chr7:55555229-55555248 MsG0780038935.01.T01:intron 75.0%
!! CGGTGCGGTGGTGCCACCAC+CGG - Chr7:55555231-55555250 None:intergenic 75.0%
! GCCACCACCGGCCACCGCAC+CGG - Chr7:55555219-55555238 None:intergenic 80.0%
! TCCGGTGCGGTGGCCGGTGG+TGG + Chr7:55555215-55555234 MsG0780038935.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 55554153 55557518 55554153 ID=MsG0780038935.01;Name=MsG0780038935.01
Chr7 mRNA 55554153 55557518 55554153 ID=MsG0780038935.01.T01;Parent=MsG0780038935.01;Name=MsG0780038935.01.T01;_AED=0.49;_eAED=0.61;_QI=0|0|0|1|1|1|2|0|150
Chr7 exon 55554153 55554260 55554153 ID=MsG0780038935.01.T01:exon:7764;Parent=MsG0780038935.01.T01
Chr7 exon 55557174 55557518 55557174 ID=MsG0780038935.01.T01:exon:7765;Parent=MsG0780038935.01.T01
Chr7 CDS 55554153 55554260 55554153 ID=MsG0780038935.01.T01:cds;Parent=MsG0780038935.01.T01
Chr7 CDS 55557174 55557518 55557174 ID=MsG0780038935.01.T01:cds;Parent=MsG0780038935.01.T01
Gene Sequence

>MsG0780038935.01.T01

ATGAAAGTGGAGAAAGAGATGGGATGTGGAATGCTTATGATGTATGAAACAATGAACAAATGGTTAGTAGCACAAGATATAAAGCAAGTCAAAGCTATCATAACAAGATGTGTGGCTGCTGCATGGATGTCGGTTTTTATGCCCGATAAGAAAGAACGCGAGAAAGCTAGCGACGAACTATTGAAGGCTCTACAATTTCTTGAGAATGAATTGAAGGGAAAATTCTTTGGAGGAGAAGAGATTGGAATTGTTGATATTGCTGCTCTCTTCATCCCTTTATTCCAAGAAGTAGCAGAATTGCAGTTATTCACAAAGGAGAAATTTCCAAAGCTATACAAATGGAGTAAAGAATTTAACAACCATCCAATAGTCAAGGAAATTATGCCTTCAAAAGATCAACAATTTGCATATTTCAAAGCTCGCGCTGAAAGCCTTGCTGCTTCATCAAAATAG
Protein sequence

>MsG0780038935.01.T01

MKVEKEMGCGMLMMYETMNKWLVAQDIKQVKAIITRCVAAAWMSVFMPDKKEREKASDELLKALQFLENELKGKFFGGEEIGIVDIAALFIPLFQEVAELQLFTKEKFPKLYKWSKEFNNHPIVKEIMPSKDQQFAYFKARAESLAASSK*