AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024506.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024506.01.T01 MTR_5g012460 98.101 316 6 0 1 316 1 316 0.0 649
MsG0580024506.01.T01 MTR_5g021050 53.788 264 120 1 54 315 13 276 8.19e-95 289
MsG0580024506.01.T01 MTR_5g021050 53.788 264 120 1 54 315 13 276 1.07e-94 289
MsG0580024506.01.T01 MTR_4g070810 53.933 267 116 2 53 315 44 307 7.55e-94 291
MsG0580024506.01.T01 MTR_1g022480 56.379 243 104 1 73 315 72 312 6.18e-91 283
MsG0580024506.01.T01 MTR_1g022480 56.379 243 104 1 73 315 72 312 6.97e-91 283
MsG0580024506.01.T01 MTR_1g022480 56.379 243 104 1 73 315 72 312 8.21e-91 283
MsG0580024506.01.T01 MTR_3g112150 57.399 223 95 0 93 315 71 293 3.34e-89 277
MsG0580024506.01.T01 MTR_3g117100 52.869 244 113 1 72 315 69 310 3.36e-88 276
MsG0580024506.01.T01 MTR_8g076880 54.894 235 106 0 81 315 45 279 7.78e-86 268
MsG0580024506.01.T01 MTR_4g070720 51.527 262 127 0 54 315 35 296 3.92e-84 264
MsG0580024506.01.T01 MTR_3g117090 50.575 261 127 1 57 315 37 297 7.27e-82 258
MsG0580024506.01.T01 MTR_3g117090 50.575 261 127 1 57 315 37 297 1.43e-81 258
MsG0580024506.01.T01 MTR_7g056587 51.064 235 115 0 81 315 66 300 1.15e-79 253
MsG0580024506.01.T01 MTR_7g056587 51.064 235 115 0 81 315 74 308 1.66e-79 253
MsG0580024506.01.T01 MTR_7g056587 51.064 235 115 0 81 315 74 308 1.76e-79 253
MsG0580024506.01.T01 MTR_7g056587 51.064 235 115 0 81 315 88 322 2.31e-79 253
MsG0580024506.01.T01 MTR_1g022480 58.586 198 82 0 118 315 31 228 4.82e-78 248
MsG0580024506.01.T01 MTR_3g010190 47.566 267 135 2 54 315 37 303 3.76e-75 239
MsG0580024506.01.T01 MTR_8g071000 50.424 236 113 2 81 315 59 291 3.39e-68 224
MsG0580024506.01.T01 MTR_7g056587 54.645 183 83 0 133 315 1 183 1.03e-65 214
MsG0580024506.01.T01 MTR_6g015645 57.485 167 71 0 149 315 6 172 3.21e-65 212
MsG0580024506.01.T01 MTR_4g070790 44.643 224 124 0 92 315 61 284 4.23e-65 210
MsG0580024506.01.T01 MTR_6g034285 91.919 99 8 0 151 249 195 293 9.81e-60 196
MsG0580024506.01.T01 MTR_4g070780 41.071 224 106 3 92 315 35 232 4.92e-47 163
MsG0580024506.01.T01 MTR_4g070730 39.698 199 95 2 118 315 53 227 1.33e-37 138
MsG0580024506.01.T01 MTR_3g060670 29.098 244 150 6 75 315 5 228 4.61e-18 84.0
MsG0580024506.01.T01 MTR_2g027140 28.079 203 138 3 115 315 38 234 1.04e-16 79.7
MsG0580024506.01.T01 MTR_3g098530 28.837 215 120 5 109 315 63 252 2.25e-14 72.4
MsG0580024506.01.T01 MTR_2g027140 28.108 185 125 3 133 315 1 179 3.11e-13 68.9
MsG0580024506.01.T01 MTR_8g096180 30.233 215 117 6 109 315 43 232 5.77e-13 68.2
MsG0580024506.01.T01 MTR_8g096170 30.317 221 109 8 109 315 46 235 1.70e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024506.01.T01 AT5G47510 63.478 230 84 0 87 316 23 252 1.43e-112 330
MsG0580024506.01.T01 AT5G47510 63.478 230 84 0 87 316 22 251 2.72e-112 330
MsG0580024506.01.T01 AT5G47510 63.478 230 84 0 87 316 23 252 3.31e-112 330
MsG0580024506.01.T01 AT5G47510 64.615 195 69 0 122 316 1 195 1.62e-96 288
MsG0580024506.01.T01 AT4G36490 53.543 254 116 1 64 315 25 278 3.10e-93 287
MsG0580024506.01.T01 AT2G18180 53.125 256 118 1 62 315 26 281 2.08e-92 285
MsG0580024506.01.T01 AT2G18180 53.125 256 118 1 62 315 26 281 2.49e-92 285
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 3.86e-91 281
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 3.86e-91 281
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 4.77e-91 281
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 4.77e-91 281
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 4.77e-91 281
MsG0580024506.01.T01 AT2G21540 57.826 230 97 0 86 315 66 295 4.77e-91 281
MsG0580024506.01.T01 AT4G39180 50.943 265 128 1 54 316 33 297 2.28e-90 280
MsG0580024506.01.T01 AT4G39180 50.943 265 128 1 54 316 33 297 2.29e-90 280
MsG0580024506.01.T01 AT4G39180 50.943 265 128 1 54 316 33 297 2.29e-90 280
MsG0580024506.01.T01 AT1G19650 53.527 241 112 0 75 315 64 304 1.11e-89 275
MsG0580024506.01.T01 AT4G34580 50.943 265 127 1 54 315 24 288 1.88e-88 275
MsG0580024506.01.T01 AT4G34580 50.943 265 127 1 54 315 24 288 1.88e-88 275
MsG0580024506.01.T01 AT1G19650 53.527 241 112 0 75 315 64 304 3.47e-88 276
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.60e-87 273
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.60e-87 273
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.60e-87 273
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.79e-87 272
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.79e-87 272
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.79e-87 272
MsG0580024506.01.T01 AT3G24840 49.632 272 134 1 48 316 33 304 3.79e-87 272
MsG0580024506.01.T01 AT4G39170 53.617 235 109 0 81 315 74 308 5.88e-87 273
MsG0580024506.01.T01 AT4G39170 53.617 235 109 0 81 315 74 308 5.97e-87 273
MsG0580024506.01.T01 AT1G75370 55.932 236 104 0 80 315 78 313 1.57e-86 271
MsG0580024506.01.T01 AT1G75370 55.932 236 104 0 80 315 78 313 1.05e-85 271
MsG0580024506.01.T01 AT2G21520 50.800 250 119 1 70 315 61 310 1.63e-85 270
MsG0580024506.01.T01 AT2G21520 50.800 250 119 1 70 315 65 314 1.69e-85 270
MsG0580024506.01.T01 AT2G21520 50.800 250 119 1 70 315 65 314 1.69e-85 270
MsG0580024506.01.T01 AT2G16380 54.709 223 101 0 93 315 66 288 2.39e-84 264
MsG0580024506.01.T01 AT2G16380 54.709 223 101 0 93 315 66 288 2.39e-84 264
MsG0580024506.01.T01 AT5G56160 48.120 266 134 3 54 315 30 295 6.49e-80 251
MsG0580024506.01.T01 AT5G56160 48.120 266 134 3 54 315 30 295 1.94e-79 252
MsG0580024506.01.T01 AT5G56160 48.120 266 134 3 54 315 30 295 1.94e-79 252
MsG0580024506.01.T01 AT1G19650 56.098 205 90 0 111 315 28 232 6.70e-79 250
MsG0580024506.01.T01 AT2G18180 55.224 201 90 0 115 315 10 210 4.53e-78 246
MsG0580024506.01.T01 AT2G18180 55.224 201 90 0 115 315 10 210 7.85e-78 246
MsG0580024506.01.T01 AT2G18180 57.923 183 77 0 133 315 1 183 4.85e-74 235
MsG0580024506.01.T01 AT1G55690 47.191 267 136 2 54 315 36 302 1.12e-73 238
MsG0580024506.01.T01 AT1G55690 47.191 267 136 2 54 315 36 302 1.54e-73 238
MsG0580024506.01.T01 AT1G55690 47.191 267 136 2 54 315 36 302 1.54e-73 238
MsG0580024506.01.T01 AT1G55690 47.191 267 136 2 54 315 36 302 1.54e-73 238
MsG0580024506.01.T01 AT1G55690 47.191 267 136 2 54 315 36 302 1.54e-73 238
MsG0580024506.01.T01 AT2G16380 54.645 183 83 0 133 315 1 183 9.03e-68 218
MsG0580024506.01.T01 AT5G47730 28.085 235 154 6 90 315 6 234 1.18e-17 82.8
MsG0580024506.01.T01 AT5G47730 28.085 235 154 6 90 315 6 234 1.18e-17 82.8
MsG0580024506.01.T01 AT1G55840 29.524 210 138 4 110 315 4 207 6.49e-17 80.1
MsG0580024506.01.T01 AT1G55840 28.139 231 146 5 89 315 20 234 7.07e-17 80.5
MsG0580024506.01.T01 AT5G47730 29.730 185 122 4 133 315 1 179 1.93e-14 72.8
MsG0580024506.01.T01 AT5G47730 29.730 185 122 4 133 315 1 179 1.93e-14 72.8

Find 59 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTATCCGCTCATGAAATT+TGG 0.226089 5:-5783445 MsG0580024506.01.T01:CDS
ATTTGGAAGGAGTAAAAGTT+TGG 0.279082 5:-5783428 MsG0580024506.01.T01:CDS
TTTATTATTAATGCTGGTTC+TGG 0.287893 5:-5782169 MsG0580024506.01.T01:CDS
TCAACAATTTGTTCATCATT+TGG 0.301735 5:+5783379 None:intergenic
GATCTTCCTACTACACAAAA+AGG 0.336401 5:-5783505 MsG0580024506.01.T01:CDS
CCTGTGTATATTGAGAGAAT+TGG 0.338897 5:-5782758 MsG0580024506.01.T01:CDS
ATAATTGAGAAACATATCTT+TGG 0.343213 5:+5783154 None:intergenic
ATGATTATCATACTCTTCTA+AGG 0.346356 5:-5783306 MsG0580024506.01.T01:intron
TGCATCATCTTCTGGTGTTA+AGG 0.348901 5:-5783572 MsG0580024506.01.T01:CDS
TCCATGAAGATGTACCTTGC+AGG 0.355379 5:+5782459 None:intergenic
CTGTCTTCGCCTTTCGCCGT+TGG 0.369283 5:+5783628 None:intergenic
AGAAAAGATGCATCATCTTC+TGG 0.370086 5:-5783580 MsG0580024506.01.T01:CDS
AATAGGAGGATGAATTGATT+TGG 0.371367 5:+5783540 None:intergenic
TGTTTCTCAATTATCTGAAA+TGG 0.373010 5:-5783145 MsG0580024506.01.T01:CDS
GCATCATCTTCTGGTGTTAA+GGG 0.378251 5:-5783571 MsG0580024506.01.T01:CDS
GTATGATAATCATTGTGTTT+AGG 0.394177 5:+5783316 None:intergenic
GCCTGCAAGGTACATCTTCA+TGG 0.400385 5:-5782460 MsG0580024506.01.T01:CDS
AAACTCTTTATTATTAATGC+TGG 0.402252 5:-5782175 MsG0580024506.01.T01:CDS
AGCTTCCACCACAAGTATCT+TGG 0.410693 5:-5782606 MsG0580024506.01.T01:CDS
AAGGAGTAAAAGTTTGGAAA+AGG 0.439103 5:-5783422 MsG0580024506.01.T01:CDS
TCCTCCTATTGAAACGCATT+GGG 0.444721 5:-5783527 MsG0580024506.01.T01:CDS
AGATCCCAATGCGTTTCAAT+AGG 0.448836 5:+5783523 None:intergenic
AGTTTGGAAAAGGTTCTAGA+AGG 0.449950 5:-5783412 MsG0580024506.01.T01:CDS
CGCGAAATGCTTTCACGTGA+GGG 0.453780 5:-5783349 MsG0580024506.01.T01:CDS
TCGAGTCGACATGATTCATA+AGG 0.459041 5:-5783111 MsG0580024506.01.T01:intron
ATAAGACAACAATGACTTGA+TGG 0.465943 5:+5783462 None:intergenic
ATCCTCCTATTGAAACGCAT+TGG 0.466005 5:-5783528 MsG0580024506.01.T01:CDS
CTTCTGGTGTTAAGGGATTG+AGG 0.494321 5:-5783564 MsG0580024506.01.T01:CDS
CTTGATAAGCCTTTCTTGTG+TGG 0.496556 5:+5782703 None:intergenic
CTGTGTATATTGAGAGAATT+GGG 0.498675 5:-5782757 MsG0580024506.01.T01:CDS
ACAAGTATCTTGGATGTCAA+TGG 0.505672 5:-5782596 MsG0580024506.01.T01:CDS
TTGCTACTGTGCGTTCACTT+AGG 0.508717 5:+5782113 None:intergenic
GGCAAATAACCACACAAGAA+AGG 0.513788 5:-5782712 MsG0580024506.01.T01:CDS
TCGCGAAATGCTTTCACGTG+AGG 0.516953 5:-5783350 MsG0580024506.01.T01:CDS
CTCCTTCCAAATTTCATGAG+CGG 0.525376 5:+5783439 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.526574 5:-5782153 MsG0580024506.01.T01:CDS
TTAGCTGCTAATGAACATGC+AGG 0.545388 5:+5782638 None:intergenic
ATGAGTACTCCAACGGCGAA+AGG 0.545746 5:-5783637 MsG0580024506.01.T01:CDS
TACTATCCTCATGGATACCA+TGG 0.558498 5:-5782800 MsG0580024506.01.T01:CDS
TCCCAATGCGTTTCAATAGG+AGG 0.565630 5:+5783526 None:intergenic
CTTTGACGTCAAGGTTTCTG+CGG 0.568605 5:-5783202 MsG0580024506.01.T01:intron
ATCCGCTCATGAAATTTGGA+AGG 0.576650 5:-5783441 MsG0580024506.01.T01:CDS
AAATGATGAACAAATTGTTG+AGG 0.576847 5:-5783377 MsG0580024506.01.T01:CDS
TGATAATCATTGTGTTTAGG+TGG 0.583255 5:+5783319 None:intergenic
CAATTATCTGAAATGGCGAA+AGG 0.593477 5:-5783138 MsG0580024506.01.T01:CDS
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 5:-5782473 MsG0580024506.01.T01:CDS
TTACCTCAGTGTGTTGCTAG+AGG 0.609354 5:-5781938 MsG0580024506.01.T01:CDS
TGCCACATTTATCAACTCCA+TGG 0.612313 5:+5782783 None:intergenic
CCAATTCTCTCAATATACAC+AGG 0.625976 5:+5782758 None:intergenic
TAGCTGCTAATGAACATGCA+GGG 0.636345 5:+5782639 None:intergenic
ATTGACATCCAAGATACTTG+TGG 0.642379 5:+5782598 None:intergenic
TGATAGATATTAACAAACTG+TGG 0.642658 5:-5782733 MsG0580024506.01.T01:CDS
TGATAGCAGTTATTATCCTG+AGG 0.642954 5:-5782424 MsG0580024506.01.T01:intron
GACATCCAAGATACTTGTGG+TGG 0.658366 5:+5782601 None:intergenic
TGTATGAATGAGTACTCCAA+CGG 0.664945 5:-5783644 None:intergenic
TACCATGGAGTTGATAAATG+TGG 0.686716 5:-5782785 MsG0580024506.01.T01:CDS
TGCTAGAGGATATTGATCCG+AGG 0.699774 5:-5781924 MsG0580024506.01.T01:CDS
TCAACTCCATGGTATCCATG+AGG 0.729821 5:+5782794 None:intergenic
TATCCTCTAGCAACACACTG+AGG 0.753762 5:+5781935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTTTTAAAAAGTTA+TGG + Chr5:5782568-5782587 None:intergenic 10.0%
!!! ATATGAAATTTTTATTTGGT+TGG - Chr5:5782512-5782531 MsG0580024506.01.T01:intron 15.0%
!! AAACTCTTTATTATTAATGC+TGG - Chr5:5783383-5783402 MsG0580024506.01.T01:CDS 20.0%
!! AACAAATTAAAACTCAACTA+TGG + Chr5:5782669-5782688 None:intergenic 20.0%
!! ATAATTGAGAAACATATCTT+TGG + Chr5:5782407-5782426 None:intergenic 20.0%
!! GTGTTTCATAATTTACTATA+TGG - Chr5:5783009-5783028 MsG0580024506.01.T01:intron 20.0%
!!! TTTTGATGTCATTCATTTTT+TGG - Chr5:5782688-5782707 MsG0580024506.01.T01:CDS 20.0%
! AAATGATGAACAAATTGTTG+AGG - Chr5:5782181-5782200 MsG0580024506.01.T01:CDS 25.0%
! ATGATTATCATACTCTTCTA+AGG - Chr5:5782252-5782271 MsG0580024506.01.T01:intron 25.0%
! GTATGATAATCATTGTGTTT+AGG + Chr5:5782245-5782264 None:intergenic 25.0%
! TGATAGATATTAACAAACTG+TGG - Chr5:5782825-5782844 MsG0580024506.01.T01:CDS 25.0%
! TGTTTCTCAATTATCTGAAA+TGG - Chr5:5782413-5782432 MsG0580024506.01.T01:intron 25.0%
!! TCAACAATTTGTTCATCATT+TGG + Chr5:5782182-5782201 None:intergenic 25.0%
!! TCTGTTCTAAATCATGTTTA+TGG - Chr5:5782310-5782329 MsG0580024506.01.T01:intron 25.0%
!!! AATTTTAATCGACTTCGATA+GGG + Chr5:5783337-5783356 None:intergenic 25.0%
!!! TCATTTTTTGGTACATAATC+AGG - Chr5:5782700-5782719 MsG0580024506.01.T01:CDS 25.0%
!!! TTTATTATTAATGCTGGTTC+TGG - Chr5:5783389-5783408 MsG0580024506.01.T01:CDS 25.0%
AAGGAGTAAAAGTTTGGAAA+AGG - Chr5:5782136-5782155 MsG0580024506.01.T01:CDS 30.0%
AATAGGAGGATGAATTGATT+TGG + Chr5:5782021-5782040 None:intergenic 30.0%
ATAAGACAACAATGACTTGA+TGG + Chr5:5782099-5782118 None:intergenic 30.0%
ATTTGGAAGGAGTAAAAGTT+TGG - Chr5:5782130-5782149 MsG0580024506.01.T01:CDS 30.0%
CAGTAGCAAAAATTCAAGTA+TGG - Chr5:5783459-5783478 MsG0580024506.01.T01:CDS 30.0%
CATAACCAAATCAGCATTAT+TGG + Chr5:5783036-5783055 None:intergenic 30.0%
CTAAATCATGTTTATGGACT+TGG - Chr5:5782316-5782335 MsG0580024506.01.T01:intron 30.0%
CTGTGTATATTGAGAGAATT+GGG - Chr5:5782801-5782820 MsG0580024506.01.T01:CDS 30.0%
GTGAAAAAATACTATCCTCA+TGG - Chr5:5782749-5782768 MsG0580024506.01.T01:CDS 30.0%
TGATAATCATTGTGTTTAGG+TGG + Chr5:5782242-5782261 None:intergenic 30.0%
! ATAAGGTGAATTGACTCAAA+AGG - Chr5:5782464-5782483 MsG0580024506.01.T01:CDS 30.0%
! TTCTTTCCTTTTTGTGTAGT+AGG + Chr5:5782062-5782081 None:intergenic 30.0%
!! GAATTTTAATCGACTTCGAT+AGG + Chr5:5783338-5783357 None:intergenic 30.0%
AAAACCTGAAACAGGAATGT+TGG + Chr5:5783591-5783610 None:intergenic 35.0%
ACAAGTATCTTGGATGTCAA+TGG - Chr5:5782962-5782981 MsG0580024506.01.T01:intron 35.0%
AGAAAAGATGCATCATCTTC+TGG - Chr5:5781978-5781997 MsG0580024506.01.T01:intron 35.0%
ATTGACATCCAAGATACTTG+TGG + Chr5:5782963-5782982 None:intergenic 35.0%
CCAATTCTCTCAATATACAC+AGG + Chr5:5782803-5782822 None:intergenic 35.0%
CCTGTGTATATTGAGAGAAT+TGG - Chr5:5782800-5782819 MsG0580024506.01.T01:CDS 35.0%
GATCTTCCTACTACACAAAA+AGG - Chr5:5782053-5782072 MsG0580024506.01.T01:intron 35.0%
GTGGTTGTATTATTCTTCCA+GGG - Chr5:5783057-5783076 MsG0580024506.01.T01:intron 35.0%
TCTTATCCGCTCATGAAATT+TGG - Chr5:5782113-5782132 MsG0580024506.01.T01:CDS 35.0%
TGATAGCAGTTATTATCCTG+AGG - Chr5:5783134-5783153 MsG0580024506.01.T01:CDS 35.0%
TGTGGTTGTATTATTCTTCC+AGG - Chr5:5783056-5783075 MsG0580024506.01.T01:intron 35.0%
TTGAGAAATTAGACATTCCC+TGG + Chr5:5783077-5783096 None:intergenic 35.0%
TTTGTTGATCATAGCTCATG+CGG - Chr5:5783162-5783181 MsG0580024506.01.T01:CDS 35.0%
! ATGGTCCAATAATGCTGATT+TGG - Chr5:5783028-5783047 MsG0580024506.01.T01:intron 35.0%
! CAATTATCTGAAATGGCGAA+AGG - Chr5:5782420-5782439 MsG0580024506.01.T01:intron 35.0%
!! AATGCTGATTTGGTTATGTG+TGG - Chr5:5783038-5783057 MsG0580024506.01.T01:intron 35.0%
!! AGTTTGGAAAAGGTTCTAGA+AGG - Chr5:5782146-5782165 MsG0580024506.01.T01:CDS 35.0%
!! TACCATGGAGTTGATAAATG+TGG - Chr5:5782773-5782792 MsG0580024506.01.T01:CDS 35.0%
!! TGATCAACAAAAAGTACCTC+AGG + Chr5:5783153-5783172 None:intergenic 35.0%
!!! AACATTCCTGTTTCAGGTTT+TGG - Chr5:5783590-5783609 MsG0580024506.01.T01:CDS 35.0%
!!! ACATTCCTGTTTCAGGTTTT+GGG - Chr5:5783591-5783610 MsG0580024506.01.T01:CDS 35.0%
AGATCCCAATGCGTTTCAAT+AGG + Chr5:5782038-5782057 None:intergenic 40.0%
ATCCGCTCATGAAATTTGGA+AGG - Chr5:5782117-5782136 MsG0580024506.01.T01:CDS 40.0%
ATCCTCCTATTGAAACGCAT+TGG - Chr5:5782030-5782049 MsG0580024506.01.T01:intron 40.0%
ATCTCCAACATTCCTGTTTC+AGG - Chr5:5783584-5783603 MsG0580024506.01.T01:CDS 40.0%
CTAATTTCTCAAAGCCTGCA+AGG - Chr5:5783085-5783104 MsG0580024506.01.T01:intron 40.0%
CTCCTTCCAAATTTCATGAG+CGG + Chr5:5782122-5782141 None:intergenic 40.0%
CTTGATAAGCCTTTCTTGTG+TGG + Chr5:5782858-5782877 None:intergenic 40.0%
GGCAAATAACCACACAAGAA+AGG - Chr5:5782846-5782865 MsG0580024506.01.T01:intron 40.0%
GTGCAAAATCATTGCATCTG+AGG + Chr5:5783512-5783531 None:intergenic 40.0%
TACTATCCTCATGGATACCA+TGG - Chr5:5782758-5782777 MsG0580024506.01.T01:CDS 40.0%
TAGAACCCAAAACCTGAAAC+AGG + Chr5:5783599-5783618 None:intergenic 40.0%
TAGCTGCTAATGAACATGCA+GGG + Chr5:5782922-5782941 None:intergenic 40.0%
TCCTCCTATTGAAACGCATT+GGG - Chr5:5782031-5782050 MsG0580024506.01.T01:intron 40.0%
TCGAGTCGACATGATTCATA+AGG - Chr5:5782447-5782466 MsG0580024506.01.T01:CDS 40.0%
TGCCACATTTATCAACTCCA+TGG + Chr5:5782778-5782797 None:intergenic 40.0%
TTAGCTGCTAATGAACATGC+AGG + Chr5:5782923-5782942 None:intergenic 40.0%
! GCATCATCTTCTGGTGTTAA+GGG - Chr5:5781987-5782006 MsG0580024506.01.T01:intron 40.0%
! TGCATCATCTTCTGGTGTTA+AGG - Chr5:5781986-5782005 MsG0580024506.01.T01:intron 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG - Chr5:5783405-5783424 MsG0580024506.01.T01:CDS 40.0%
AGCTTCCACCACAAGTATCT+TGG - Chr5:5782952-5782971 MsG0580024506.01.T01:intron 45.0%
CTGTATTGCCTTTGACGTCA+AGG - Chr5:5782347-5782366 MsG0580024506.01.T01:intron 45.0%
CTTTGACGTCAAGGTTTCTG+CGG - Chr5:5782356-5782375 MsG0580024506.01.T01:intron 45.0%
GACATCCAAGATACTTGTGG+TGG + Chr5:5782960-5782979 None:intergenic 45.0%
TAGCTCATGCGGAGATGATT+TGG - Chr5:5783173-5783192 MsG0580024506.01.T01:CDS 45.0%
TATCCTCTAGCAACACACTG+AGG + Chr5:5783626-5783645 None:intergenic 45.0%
TCAACTCCATGGTATCCATG+AGG + Chr5:5782767-5782786 None:intergenic 45.0%
TCCATGAAGATGTACCTTGC+AGG + Chr5:5783102-5783121 None:intergenic 45.0%
TCCCAATGCGTTTCAATAGG+AGG + Chr5:5782035-5782054 None:intergenic 45.0%
TGCTAGAGGATATTGATCCG+AGG - Chr5:5783634-5783653 MsG0580024506.01.T01:CDS 45.0%
TGTATCAACCTCTAGCTGAC+AGG - Chr5:5783545-5783564 MsG0580024506.01.T01:CDS 45.0%
TTGCTACTGTGCGTTCACTT+AGG + Chr5:5783448-5783467 None:intergenic 45.0%
! CTTCTGGTGTTAAGGGATTG+AGG - Chr5:5781994-5782013 MsG0580024506.01.T01:intron 45.0%
! TTACCTCAGTGTGTTGCTAG+AGG - Chr5:5783620-5783639 MsG0580024506.01.T01:CDS 45.0%
!!! TTAAATATGAAATTTTTATT+TGG - Chr5:5782508-5782527 MsG0580024506.01.T01:intron 5.0%
AACACAAGCCTGTCAGCTAG+AGG + Chr5:5783556-5783575 None:intergenic 50.0%
ATGAGTACTCCAACGGCGAA+AGG - Chr5:5781921-5781940 MsG0580024506.01.T01:CDS 50.0%
CGCAGAAACCTTGACGTCAA+AGG + Chr5:5782358-5782377 None:intergenic 50.0%
CGCGAAATGCTTTCACGTGA+GGG - Chr5:5782209-5782228 MsG0580024506.01.T01:intron 50.0%
GCCTGCAAGGTACATCTTCA+TGG - Chr5:5783098-5783117 MsG0580024506.01.T01:intron 50.0%
TCGCGAAATGCTTTCACGTG+AGG - Chr5:5782208-5782227 MsG0580024506.01.T01:intron 50.0%
CTGTCTTCGCCTTTCGCCGT+TGG + Chr5:5781933-5781952 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5781921 5783659 5781921 ID=MsG0580024506.01;Name=MsG0580024506.01
Chr5 mRNA 5781921 5783659 5781921 ID=MsG0580024506.01.T01;Parent=MsG0580024506.01;Name=MsG0580024506.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|0.8|0.83|6|0|317
Chr5 exon 5783307 5783659 5783307 ID=MsG0580024506.01.T01:exon:25702;Parent=MsG0580024506.01.T01
Chr5 exon 5783112 5783211 5783112 ID=MsG0580024506.01.T01:exon:25701;Parent=MsG0580024506.01.T01
Chr5 exon 5782592 5782858 5782592 ID=MsG0580024506.01.T01:exon:25700;Parent=MsG0580024506.01.T01
Chr5 exon 5782425 5782502 5782425 ID=MsG0580024506.01.T01:exon:25699;Parent=MsG0580024506.01.T01
Chr5 exon 5782105 5782206 5782105 ID=MsG0580024506.01.T01:exon:25698;Parent=MsG0580024506.01.T01
Chr5 exon 5781921 5781974 5781921 ID=MsG0580024506.01.T01:exon:25697;Parent=MsG0580024506.01.T01
Chr5 CDS 5783307 5783659 5783307 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Chr5 CDS 5783112 5783211 5783112 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Chr5 CDS 5782592 5782858 5782592 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Chr5 CDS 5782425 5782502 5782425 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Chr5 CDS 5782105 5782206 5782105 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Chr5 CDS 5781921 5781974 5781921 ID=MsG0580024506.01.T01:cds;Parent=MsG0580024506.01.T01
Gene Sequence

>MsG0580024506.01.T01

ATGAGTACTCCAACGGCGAAAGGCGAAGACAGAGATATTGTTATAACAAGAAGTGATAGAAAAGATGCATCATCTTCTGGTGTTAAGGGATTGAGGACCAAATCAATTCATCCTCCTATTGAAACGCATTGGGATCTTCCTACTACACAAAAAGGAAAGAAAAAAGCTTCATTCTCCATCAAGTCATTGTTGTCTTATCCGCTCATGAAATTTGGAAGGAGTAAAAGTTTGGAAAAGGTTCTAGAAGGAACTCATGATCCAAATGATGAACAAATTGTTGAGGCTTTTCGCGAAATGCTTTCACGTGAGGGTCTATTACCACCTAAACACAATGATTATCATACTCTTCTAAGGTTTCTGCGGATGAATGATTTTGATATGACAATATCCAAAGATATGTTTCTCAATTATCTGAAATGGCGAAAGGAATTTCGAGTCGACATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAAAAATACTATCCTCATGGATACCATGGAGTTGATAAATGTGGCAGACCTGTGTATATTGAGAGAATTGGGATGATAGATATTAACAAACTGTGGCAAATAACCACACAAGAAAGGCTTATCAAGCATCATGTGTCAGAACAAGAGAAAACACTAAGAGTAAGATACCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACCACAAGTATCTTGGATGTCAATGGAGTAGGAATGTCTAATTTCTCAAAGCCTGCAAGGTACATCTTCATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGACTCTAAATAAACTCTTTATTATTAATGCTGGTTCTGGCTTTAAGATGTTGTGGAAAGCAGTGAAAGCATTCCTAAGTGAACGCACAGTAGCAAAAATTCAAGTTTTGGGTTCTAATTACCTCAGTGTGTTGCTAGAGGATATTGATCCGAGGTAA

Protein sequence

>MsG0580024506.01.T01

MSTPTAKGEDRDIVITRSDRKDASSSGVKGLRTKSIHPPIETHWDLPTTQKGKKKASFSIKSLLSYPLMKFGRSKSLEKVLEGTHDPNDEQIVEAFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKDMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKYYPHGYHGVDKCGRPVYIERIGMIDINKLWQITTQERLIKHHVSEQEKTLRVRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIINAGSGFKMLWKAVKAFLSERTVAKIQVLGSNYLSVLLEDIDPR*