AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042019.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042019.01.T03 MTR_8g009560 79.630 108 3 1 22 129 1 89 6.90e-52 173
MsG0880042019.01.T03 MTR_8g009590 54.630 108 30 1 22 129 37 125 9.78e-34 124
MsG0880042019.01.T03 MTR_4g054150 58.333 108 23 2 22 129 1 86 2.37e-32 120
MsG0880042019.01.T03 MTR_7g090100 53.704 108 28 2 22 129 1 86 4.00e-30 114
MsG0880042019.01.T03 MTR_7g090140 52.778 108 29 2 22 129 1 86 1.97e-29 112
MsG0880042019.01.T03 MTR_4g054290 53.704 108 28 2 22 129 1 86 2.54e-29 111
MsG0880042019.01.T03 MTR_7g090120 51.852 108 30 2 22 129 1 86 8.73e-28 107
MsG0880042019.01.T01 MTR_8g009560 96.689 151 5 0 1 151 263 413 2.65e-97 295
MsG0880042019.01.T01 MTR_8g009560 93.333 60 4 0 143 202 563 622 2.55e-34 128
MsG0880042019.01.T01 MTR_7g090120 66.438 146 49 0 1 146 260 405 6.22e-63 205
MsG0880042019.01.T01 MTR_7g090120 72.222 54 15 0 143 196 559 612 1.01e-23 98.2
MsG0880042019.01.T01 MTR_8g009590 63.014 146 53 1 1 145 299 444 7.09e-62 203
MsG0880042019.01.T01 MTR_8g009590 60.000 55 22 0 143 197 600 654 2.09e-19 85.9
MsG0880042019.01.T01 MTR_7g090100 65.517 145 50 0 1 145 260 404 2.58e-61 201
MsG0880042019.01.T01 MTR_7g090100 74.074 54 14 0 143 196 557 610 1.97e-24 100
MsG0880042019.01.T01 MTR_7g090140 64.828 145 51 0 1 145 165 309 1.29e-59 195
MsG0880042019.01.T01 MTR_7g090140 72.727 55 15 0 143 197 463 517 1.35e-24 100
MsG0880042019.01.T01 MTR_7g090140 64.828 145 51 0 1 145 260 404 1.79e-58 194
MsG0880042019.01.T01 MTR_7g090140 72.727 55 15 0 143 197 558 612 2.63e-24 100
MsG0880042019.01.T01 MTR_4g054150 64.828 145 51 0 1 145 239 383 2.19e-58 193
MsG0880042019.01.T01 MTR_4g054150 68.333 60 19 0 143 202 538 597 7.07e-25 101
MsG0880042019.01.T01 MTR_4g054290 64.138 145 52 0 1 145 260 404 4.76e-57 190
MsG0880042019.01.T01 MTR_4g054290 72.727 55 15 0 143 197 559 613 9.93e-24 98.2
MsG0880042019.01.T01 MTR_4g054320 75.926 54 13 0 144 197 42 95 2.66e-26 97.4
MsG0880042019.01.T01 MTR_4g129630 33.557 149 96 2 1 146 262 410 1.78e-16 77.4
MsG0880042019.01.T02 MTR_8g009560 96.689 151 5 0 1 151 263 413 2.65e-97 295
MsG0880042019.01.T02 MTR_8g009560 93.333 60 4 0 143 202 563 622 2.55e-34 128
MsG0880042019.01.T02 MTR_7g090120 66.438 146 49 0 1 146 260 405 6.22e-63 205
MsG0880042019.01.T02 MTR_7g090120 72.222 54 15 0 143 196 559 612 1.01e-23 98.2
MsG0880042019.01.T02 MTR_8g009590 63.014 146 53 1 1 145 299 444 7.09e-62 203
MsG0880042019.01.T02 MTR_8g009590 60.000 55 22 0 143 197 600 654 2.09e-19 85.9
MsG0880042019.01.T02 MTR_7g090100 65.517 145 50 0 1 145 260 404 2.58e-61 201
MsG0880042019.01.T02 MTR_7g090100 74.074 54 14 0 143 196 557 610 1.97e-24 100
MsG0880042019.01.T02 MTR_7g090140 64.828 145 51 0 1 145 165 309 1.29e-59 195
MsG0880042019.01.T02 MTR_7g090140 72.727 55 15 0 143 197 463 517 1.35e-24 100
MsG0880042019.01.T02 MTR_7g090140 64.828 145 51 0 1 145 260 404 1.79e-58 194
MsG0880042019.01.T02 MTR_7g090140 72.727 55 15 0 143 197 558 612 2.63e-24 100
MsG0880042019.01.T02 MTR_4g054150 64.828 145 51 0 1 145 239 383 2.19e-58 193
MsG0880042019.01.T02 MTR_4g054150 68.333 60 19 0 143 202 538 597 7.07e-25 101
MsG0880042019.01.T02 MTR_4g054290 64.138 145 52 0 1 145 260 404 4.76e-57 190
MsG0880042019.01.T02 MTR_4g054290 72.727 55 15 0 143 197 559 613 9.93e-24 98.2
MsG0880042019.01.T02 MTR_4g054320 75.926 54 13 0 144 197 42 95 2.66e-26 97.4
MsG0880042019.01.T02 MTR_4g129630 33.557 149 96 2 1 146 262 410 1.78e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042019.01.T03 AT1G02205 49.074 108 36 1 22 129 1 89 4.99e-32 119
MsG0880042019.01.T03 AT1G02205 49.074 108 36 1 22 129 1 89 5.03e-32 119
MsG0880042019.01.T03 AT1G02190 49.074 108 36 1 22 129 1 89 2.93e-28 108
MsG0880042019.01.T03 AT1G02190 49.074 108 36 1 22 129 1 89 3.12e-28 108
MsG0880042019.01.T03 AT1G02205 43.820 89 47 1 41 129 5 90 3.22e-22 91.7
MsG0880042019.01.T03 AT2G37700 44.444 108 37 2 22 129 1 85 9.73e-22 90.1
MsG0880042019.01.T03 AT2G37700 44.444 108 37 2 22 129 1 85 1.28e-21 89.7
MsG0880042019.01.T03 AT2G37700 44.444 108 37 2 22 129 1 85 1.45e-21 89.7
MsG0880042019.01.T03 AT2G37700 44.444 108 37 2 22 129 1 85 1.53e-21 89.7
MsG0880042019.01.T01 AT1G02205 61.379 145 56 0 1 145 24 168 3.81e-61 195
MsG0880042019.01.T01 AT1G02205 57.627 59 23 1 143 199 327 385 1.37e-18 83.2
MsG0880042019.01.T01 AT1G02205 60.959 146 57 0 1 146 99 244 2.87e-60 195
MsG0880042019.01.T01 AT1G02205 57.627 59 23 1 143 199 402 460 1.84e-18 83.2
MsG0880042019.01.T01 AT1G02205 60.959 146 57 0 1 146 264 409 1.63e-58 194
MsG0880042019.01.T01 AT1G02205 57.627 59 23 1 143 199 567 625 2.97e-18 82.8
MsG0880042019.01.T01 AT1G02205 60.959 146 57 0 1 146 263 408 2.94e-58 193
MsG0880042019.01.T01 AT1G02205 57.627 59 23 1 143 199 566 624 3.92e-18 82.4
MsG0880042019.01.T01 AT1G02205 60.959 146 57 0 1 146 263 408 4.11e-58 193
MsG0880042019.01.T01 AT1G02205 57.627 59 23 1 143 199 571 629 4.41e-18 82.0
MsG0880042019.01.T01 AT2G37700 55.782 147 64 1 1 146 259 405 3.58e-48 164
MsG0880042019.01.T01 AT2G37700 55.782 147 64 1 1 146 222 368 2.15e-47 164
MsG0880042019.01.T01 AT2G37700 55.357 56 22 1 143 195 523 578 3.83e-15 73.6
MsG0880042019.01.T01 AT2G37700 55.782 147 64 1 1 146 259 405 3.43e-47 163
MsG0880042019.01.T01 AT2G37700 55.357 56 22 1 143 195 551 606 4.15e-15 73.6
MsG0880042019.01.T01 AT2G37700 55.782 147 64 1 1 146 259 405 3.71e-47 163
MsG0880042019.01.T01 AT2G37700 55.357 56 22 1 143 195 560 615 3.72e-15 73.6
MsG0880042019.01.T01 AT1G02190 52.667 150 66 3 1 145 263 412 1.32e-41 148
MsG0880042019.01.T01 AT1G02190 56.364 55 22 1 143 195 568 622 3.65e-15 73.6
MsG0880042019.01.T01 AT1G02190 52.667 150 62 4 1 145 263 408 5.71e-40 144
MsG0880042019.01.T01 AT1G02190 56.364 55 22 1 143 195 564 618 3.79e-15 73.6
MsG0880042019.01.T01 AT5G57800 33.557 149 96 1 1 146 265 413 2.74e-17 79.7
MsG0880042019.01.T02 AT1G02205 61.379 145 56 0 1 145 24 168 3.81e-61 195
MsG0880042019.01.T02 AT1G02205 57.627 59 23 1 143 199 327 385 1.37e-18 83.2
MsG0880042019.01.T02 AT1G02205 60.959 146 57 0 1 146 99 244 2.87e-60 195
MsG0880042019.01.T02 AT1G02205 57.627 59 23 1 143 199 402 460 1.84e-18 83.2
MsG0880042019.01.T02 AT1G02205 60.959 146 57 0 1 146 264 409 1.63e-58 194
MsG0880042019.01.T02 AT1G02205 57.627 59 23 1 143 199 567 625 2.97e-18 82.8
MsG0880042019.01.T02 AT1G02205 60.959 146 57 0 1 146 263 408 2.94e-58 193
MsG0880042019.01.T02 AT1G02205 57.627 59 23 1 143 199 566 624 3.92e-18 82.4
MsG0880042019.01.T02 AT1G02205 60.959 146 57 0 1 146 263 408 4.11e-58 193
MsG0880042019.01.T02 AT1G02205 57.627 59 23 1 143 199 571 629 4.41e-18 82.0
MsG0880042019.01.T02 AT2G37700 55.782 147 64 1 1 146 259 405 3.58e-48 164
MsG0880042019.01.T02 AT2G37700 55.782 147 64 1 1 146 222 368 2.15e-47 164
MsG0880042019.01.T02 AT2G37700 55.357 56 22 1 143 195 523 578 3.83e-15 73.6
MsG0880042019.01.T02 AT2G37700 55.782 147 64 1 1 146 259 405 3.43e-47 163
MsG0880042019.01.T02 AT2G37700 55.357 56 22 1 143 195 551 606 4.15e-15 73.6
MsG0880042019.01.T02 AT2G37700 55.782 147 64 1 1 146 259 405 3.71e-47 163
MsG0880042019.01.T02 AT2G37700 55.357 56 22 1 143 195 560 615 3.72e-15 73.6
MsG0880042019.01.T02 AT1G02190 52.667 150 66 3 1 145 263 412 1.32e-41 148
MsG0880042019.01.T02 AT1G02190 56.364 55 22 1 143 195 568 622 3.65e-15 73.6
MsG0880042019.01.T02 AT1G02190 52.667 150 62 4 1 145 263 408 5.71e-40 144
MsG0880042019.01.T02 AT1G02190 56.364 55 22 1 143 195 564 618 3.79e-15 73.6
MsG0880042019.01.T02 AT5G57800 33.557 149 96 1 1 146 265 413 2.74e-17 79.7

Find 28 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATCCTCACCATCATATA+TGG 0.248897 8:+2623051 None:intergenic
TCTTCTCTTATACCCTTTCT+TGG 0.257970 8:-2623495 MsG0880042019.01.T01:five_prime_UTR
GGATGCTACATGACCAAATT+TGG 0.279073 8:-2623035 MsG0880042019.01.T01:five_prime_UTR
GAGATAAAGAGATCCAAATT+TGG 0.381279 8:+2623022 None:intergenic
ATCAGTAAGTATGCCAGGTT+TGG 0.394606 8:+2623458 None:intergenic
TAGTTTCTATAACAATTCAT+AGG 0.401025 8:+2623230 None:intergenic
TGTGAATAGTCCAGAGGAAA+AGG 0.447569 8:-2623097 MsG0880042019.01.T01:five_prime_UTR
CAAGTGATCGAGAAAGCAAT+TGG 0.469729 8:-2622943 MsG0880042019.01.T01:intron
GACACCTCTCGGGAGATTCA+AGG 0.470620 8:-2623427 MsG0880042019.01.T01:intron
GGGTATAAGAGAAGAGTCAA+AGG 0.493599 8:+2623503 None:intergenic
AACCTGGCATACTTACTGAT+TGG 0.500706 8:-2623455 MsG0880042019.01.T01:five_prime_UTR
GCATCCTCACCATCATATAT+GGG 0.502244 8:+2623052 None:intergenic
GGCCAATCAGTAAGTATGCC+AGG 0.509063 8:+2623453 None:intergenic
ATTGGCCATGGACACCTCTC+GGG 0.512414 8:-2623437 MsG0880042019.01.T01:five_prime_UTR
CCTCATCTTCCCATATATGA+TGG 0.523645 8:-2623061 MsG0880042019.01.T01:five_prime_UTR
GATTGGCCATGGACACCTCT+CGG 0.524511 8:-2623438 MsG0880042019.01.T01:five_prime_UTR
TCTCGCCATCGAACCGCCAA+AGG 0.525130 8:-2623003 MsG0880042019.01.T01:five_prime_UTR
TGTGTGCTCTTTGCTATGAA+TGG 0.527943 8:+2623129 None:intergenic
CATAGGAATTAAATCATGCA+TGG 0.534462 8:+2623247 None:intergenic
CCATCATATATGGGAAGATG+AGG 0.585846 8:+2623061 None:intergenic
AATCTCCCGAGAGGTGTCCA+TGG 0.590370 8:+2623432 None:intergenic
GCATACTTACTGATTGGCCA+TGG 0.592164 8:-2623449 MsG0880042019.01.T01:five_prime_UTR
TCTTCCCATATATGATGGTG+AGG 0.622744 8:-2623056 MsG0880042019.01.T01:five_prime_UTR
AATGGATGATACAATGCAGT+GGG 0.651214 8:-2623163 MsG0880042019.01.T01:intron
AAATGGATGATACAATGCAG+TGG 0.667694 8:-2623164 MsG0880042019.01.T01:intron
TTTCATTGTGAATAGTCCAG+AGG 0.668809 8:-2623103 MsG0880042019.01.T01:five_prime_UTR
GGAAGATGAGGAAGTTACTG+AGG 0.681674 8:+2623073 None:intergenic
GAAACCTTGAATCTCCCGAG+AGG 0.749240 8:+2623423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATTTTTATTTTTA+AGG - Chr8:2621036-2621055 MsG0880042019.01.T01:intron 0.0%
!! AATGATCAAATATTAAATTA+AGG - Chr8:2617095-2617114 MsG0880042019.01.T01:intron 10.0%
!! TATTTAATGATTGAAATTAA+CGG + Chr8:2619260-2619279 None:intergenic 10.0%
!! AAATCATAAGAAGAAAAAAA+AGG + Chr8:2620565-2620584 None:intergenic 15.0%
!! AATTAAATATCGAAATATGA+TGG - Chr8:2618577-2618596 MsG0880042019.01.T01:intron 15.0%
!! ACTAATATCTTCAATTAATT+TGG - Chr8:2618260-2618279 MsG0880042019.01.T01:intron 15.0%
!! ATCAAACATTATAAAATTAG+AGG + Chr8:2621216-2621235 None:intergenic 15.0%
!! ATTTATATATGTCTTTAAGT+TGG + Chr8:2617047-2617066 None:intergenic 15.0%
!! CTACTAAATTATTTAAGAAT+TGG - Chr8:2622697-2622716 MsG0880042019.01.T01:intron 15.0%
!! CTTAACTAATATAAGTTAAA+AGG - Chr8:2618826-2618845 MsG0880042019.01.T01:CDS 15.0%
!! GATAGTAAACTATTTATATT+GGG - Chr8:2619759-2619778 MsG0880042019.01.T01:intron 15.0%
!! TAAAGACATATATAAATACA+TGG - Chr8:2617050-2617069 MsG0880042019.01.T01:intron 15.0%
!! TAAATGAAAAAAAAGCTTAA+AGG - Chr8:2621785-2621804 MsG0880042019.01.T01:intron 15.0%
!! TAATTGTTTGTTTGAAAAAA+TGG - Chr8:2616468-2616487 MsG0880042019.01.T01:CDS 15.0%
!! TGATAGTAAACTATTTATAT+TGG - Chr8:2619758-2619777 MsG0880042019.01.T01:intron 15.0%
!! TTAATTAACCTCTAATAAAA+GGG - Chr8:2619692-2619711 MsG0880042019.01.T01:intron 15.0%
!! TTGTATATTCAATATCTTAA+TGG - Chr8:2618629-2618648 MsG0880042019.01.T01:intron 15.0%
!! TTTAATTAACCTCTAATAAA+AGG - Chr8:2619691-2619710 MsG0880042019.01.T01:intron 15.0%
!! TTTAGTCTAAGTATTTAATA+TGG - Chr8:2619389-2619408 MsG0880042019.01.T01:intron 15.0%
!!! AAATTATTTTGGTTTCATTT+TGG - Chr8:2621615-2621634 MsG0880042019.01.T01:intron 15.0%
!!! AAGTTGGAAATTTTATAATA+GGG + Chr8:2617031-2617050 None:intergenic 15.0%
!!! AATATTTTTTTTTGTGTGTA+GGG - Chr8:2617134-2617153 MsG0880042019.01.T01:intron 15.0%
!!! AATGCATTGATATTTTATAT+TGG - Chr8:2617174-2617193 MsG0880042019.01.T01:intron 15.0%
!!! ATTGATTTCATGAATAATTT+GGG - Chr8:2618407-2618426 MsG0880042019.01.T01:intron 15.0%
!!! GTCAATACATATAATTTTTT+TGG - Chr8:2621479-2621498 MsG0880042019.01.T01:intron 15.0%
!!! TAAGTTGGAAATTTTATAAT+AGG + Chr8:2617032-2617051 None:intergenic 15.0%
!!! TAATATTTTTTTTTGTGTGT+AGG - Chr8:2617133-2617152 MsG0880042019.01.T01:intron 15.0%
!!! TAATTTCATTCCTTTTAAAT+GGG - Chr8:2618654-2618673 MsG0880042019.01.T01:intron 15.0%
!!! TAGTAATTTTGAATTAATAG+CGG - Chr8:2618944-2618963 MsG0880042019.01.T01:CDS 15.0%
!!! TTAATTTCATTCCTTTTAAA+TGG - Chr8:2618653-2618672 MsG0880042019.01.T01:intron 15.0%
!!! TTAATTTTGTTCATTCAATT+TGG + Chr8:2617721-2617740 None:intergenic 15.0%
!!! TTATAATGTTTGATTTTACA+CGG - Chr8:2621222-2621241 MsG0880042019.01.T01:five_prime_UTR 15.0%
!!! TTTGGTTCTTTAAATTATTT+TGG - Chr8:2621604-2621623 MsG0880042019.01.T01:intron 15.0%
!!! TTTTGTAGTATCTTTTTAAA+TGG - Chr8:2621091-2621110 MsG0880042019.01.T01:intron 15.0%
!!! TTTTTGGCTAAATTATATTT+TGG - Chr8:2621495-2621514 MsG0880042019.01.T01:intron 15.0%
!! AAAAGAAAATTTAATTGTGG+TGG + Chr8:2617567-2617586 None:intergenic 20.0%
!! AAATAGATGTAGCAATATAA+TGG - Chr8:2617863-2617882 MsG0880042019.01.T01:intron 20.0%
!! AATAGATGTAGCAATATAAT+GGG - Chr8:2617864-2617883 MsG0880042019.01.T01:intron 20.0%
!! ACCAAATTTATTAGATAAAG+AGG - Chr8:2620450-2620469 MsG0880042019.01.T01:intron 20.0%
!! ACTTATAAAACCATTTGTAA+GGG + Chr8:2619962-2619981 None:intergenic 20.0%
!! AGTGGTTATATATTATAACT+CGG + Chr8:2620268-2620287 None:intergenic 20.0%
!! ATAACATCACAATATATACA+AGG + Chr8:2622750-2622769 None:intergenic 20.0%
!! ATAGACTATAATTCAATCAA+GGG + Chr8:2623225-2623244 None:intergenic 20.0%
!! ATATATAGCTATTGTGAAAT+TGG - Chr8:2623328-2623347 MsG0880042019.01.T01:intron 20.0%
!! ATTAAAGATGCTTACATATA+AGG + Chr8:2619677-2619696 None:intergenic 20.0%
!! CACATATTAATTACAATCTA+GGG + Chr8:2618202-2618221 None:intergenic 20.0%
!! GAATGAACAAAATTAAAGAT+GGG - Chr8:2617725-2617744 MsG0880042019.01.T01:intron 20.0%
!! GAGAAAAGAAAATTTAATTG+TGG + Chr8:2617570-2617589 None:intergenic 20.0%
!! TAATTATGAAGGTAAAAACT+AGG - Chr8:2619569-2619588 MsG0880042019.01.T01:intron 20.0%
!! TACACATATTATAGTAAGAA+AGG + Chr8:2620536-2620555 None:intergenic 20.0%
!! TACTTATAAAACCATTTGTA+AGG + Chr8:2619963-2619982 None:intergenic 20.0%
!! TAGTTTCTATAACAATTCAT+AGG + Chr8:2616422-2616441 None:intergenic 20.0%
!! TATCAACAGATTAATTATGA+AGG - Chr8:2619558-2619577 MsG0880042019.01.T01:intron 20.0%
!! TCCTCTTTATCTAATAAATT+TGG + Chr8:2620454-2620473 None:intergenic 20.0%
!! TCTTTGATATACATTAAGTT+AGG - Chr8:2619461-2619480 MsG0880042019.01.T01:intron 20.0%
!! TGAATGAACAAAATTAAAGA+TGG - Chr8:2617724-2617743 MsG0880042019.01.T01:intron 20.0%
!! TGCATTATATTGTTAGAATT+AGG + Chr8:2619995-2620014 None:intergenic 20.0%
!! TGTGATGATAGATTAATAAT+TGG + Chr8:2616288-2616307 None:intergenic 20.0%
!! TTCATAGAAAAAATAATGCA+TGG + Chr8:2616340-2616359 None:intergenic 20.0%
!! TTTACGATACTTATAAGATA+AGG + Chr8:2619805-2619824 None:intergenic 20.0%
!! TTTATTTGAATTTGCAGATA+TGG - Chr8:2622443-2622462 MsG0880042019.01.T01:five_prime_UTR 20.0%
!!! AAAAACTTTCGATATGTTTT+TGG - Chr8:2620015-2620034 MsG0880042019.01.T01:intron 20.0%
!!! AAAAATAACACTAATGCTTT+TGG - Chr8:2622388-2622407 MsG0880042019.01.T01:five_prime_UTR 20.0%
!!! AAAGTTAAGGTTTTAAGTTT+AGG - Chr8:2621171-2621190 MsG0880042019.01.T01:five_prime_UTR 20.0%
!!! AAGAGTACTTTTTTTATGTT+AGG - Chr8:2620483-2620502 MsG0880042019.01.T01:intron 20.0%
!!! AGGTCTTTTTTTTTTTTTTG+TGG + Chr8:2621401-2621420 None:intergenic 20.0%
!!! ATCTTTTAAGTCACAAAATT+TGG - Chr8:2621668-2621687 MsG0880042019.01.T01:intron 20.0%
!!! ATTTTAAATTTTGTTGGTAG+TGG + Chr8:2617531-2617550 None:intergenic 20.0%
!!! CATCTTTATTTCCATATTAT+GGG + Chr8:2617436-2617455 None:intergenic 20.0%
!!! CATTGATTTCATGAATAATT+TGG - Chr8:2618406-2618425 MsG0880042019.01.T01:intron 20.0%
!!! GTGTGAATTTTAAATTTTGT+TGG + Chr8:2617537-2617556 None:intergenic 20.0%
!!! GTTAATAGAGTTTTTTTATG+TGG - Chr8:2618915-2618934 MsG0880042019.01.T01:CDS 20.0%
!!! TATATATATTTGTTACAGAG+TGG + Chr8:2620286-2620305 None:intergenic 20.0%
!!! TCATCTTTATTTCCATATTA+TGG + Chr8:2617437-2617456 None:intergenic 20.0%
!!! TCTTTTTTTTTTTTTTGTGG+TGG + Chr8:2621398-2621417 None:intergenic 20.0%
!!! TGATATTTTATATTGGTCAA+TGG - Chr8:2617181-2617200 MsG0880042019.01.T01:intron 20.0%
!!! TTGGTCACTTAATTTAATTT+TGG - Chr8:2621514-2621533 MsG0880042019.01.T01:intron 20.0%
!!! TTTTTTTTCTTCTTTCTTTC+AGG - Chr8:2622198-2622217 MsG0880042019.01.T01:intron 20.0%
! AACAATCTTCATCTTAAGTT+GGG + Chr8:2621923-2621942 None:intergenic 25.0%
! AATTCATTGAAGAAAGAAGA+AGG - Chr8:2620748-2620767 MsG0880042019.01.T01:intron 25.0%
! ACACTAAGTAATCGTAAATA+AGG + Chr8:2616815-2616834 None:intergenic 25.0%
! ATAATTTATCAACATGCTTC+AGG - Chr8:2623285-2623304 MsG0880042019.01.T01:intron 25.0%
! ATAGATGTAGCAATATAATG+GGG - Chr8:2617865-2617884 MsG0880042019.01.T01:intron 25.0%
! ATATAAACCAAAGCTATGTT+TGG + Chr8:2616972-2616991 None:intergenic 25.0%
! ATATATGTTCAATGAATGCA+GGG - Chr8:2621853-2621872 MsG0880042019.01.T01:intron 25.0%
! ATATGGAAATAAAGATGAGT+AGG - Chr8:2617439-2617458 MsG0880042019.01.T01:intron 25.0%
! ATCATGAGAATCTTCAATTA+AGG - Chr8:2622242-2622261 MsG0880042019.01.T01:intron 25.0%
! ATCCATATATCAACTAAGAT+TGG - Chr8:2620813-2620832 MsG0880042019.01.T01:intron 25.0%
! ATGGACATATTAACAATCTA+GGG + Chr8:2618096-2618115 None:intergenic 25.0%
! ATGGTGAACTATACATTAAA+AGG - Chr8:2621893-2621912 MsG0880042019.01.T01:intron 25.0%
! ATTAATTATAAGCATTTCGC+CGG + Chr8:2619136-2619155 None:intergenic 25.0%
! ATTGTTCATAAAAATCAGCA+TGG - Chr8:2617505-2617524 MsG0880042019.01.T01:intron 25.0%
! CCAATTTATGATTACATCTA+TGG - Chr8:2620691-2620710 MsG0880042019.01.T01:intron 25.0%
! CCATAGATGTAATCATAAAT+TGG + Chr8:2620694-2620713 None:intergenic 25.0%
! CTAAATATATGATATGTGAC+AGG - Chr8:2620617-2620636 MsG0880042019.01.T01:intron 25.0%
! CTTATAAAACCATTTGTAAG+GGG + Chr8:2619961-2619980 None:intergenic 25.0%
! GACACAAAAAATAAACTCAA+GGG + Chr8:2621552-2621571 None:intergenic 25.0%
! GATAGACTATAATTCAATCA+AGG + Chr8:2623226-2623245 None:intergenic 25.0%
! GATTGTAATTAATATGTGCA+TGG - Chr8:2618204-2618223 MsG0880042019.01.T01:intron 25.0%
! GCACATATTAATTACAATCT+AGG + Chr8:2618203-2618222 None:intergenic 25.0%
! GGAGGAGAATAAAAATTATT+GGG - Chr8:2617886-2617905 MsG0880042019.01.T01:intron 25.0%
! TAGACTATAATTCAATCAAG+GGG + Chr8:2623224-2623243 None:intergenic 25.0%
! TATGAACCAAAAATCGATAA+AGG + Chr8:2618531-2618550 None:intergenic 25.0%
! TCCATATATCAACTAAGATT+GGG - Chr8:2620814-2620833 MsG0880042019.01.T01:intron 25.0%
! TGACACAAAAAATAAACTCA+AGG + Chr8:2621553-2621572 None:intergenic 25.0%
! TTACTCTCTTAGAAATCAAA+AGG - Chr8:2622663-2622682 MsG0880042019.01.T01:intron 25.0%
! TTCATGAAATTAAAGTCACA+TGG + Chr8:2618115-2618134 None:intergenic 25.0%
! TTTATATAAGCAATGGAGAT+TGG - Chr8:2618851-2618870 MsG0880042019.01.T01:CDS 25.0%
!! AGTGATCGTTTTCAAATTAT+TGG - Chr8:2623442-2623461 MsG0880042019.01.T01:five_prime_UTR 25.0%
!! ATAAAAACACACTTGATAGT+TGG + Chr8:2617812-2617831 None:intergenic 25.0%
!! ATATACAATCATTTGTTACC+CGG - Chr8:2619114-2619133 MsG0880042019.01.T01:intron 25.0%
!! ATTTTATGTATGAGAGGTTT+TGG - Chr8:2623480-2623499 MsG0880042019.01.T01:five_prime_UTR 25.0%
!! ATTTTGTCATGAGTTAAGTT+GGG - Chr8:2619334-2619353 MsG0880042019.01.T01:intron 25.0%
!! CAATCTTTTCGAAATTTCTT+TGG + Chr8:2622550-2622569 None:intergenic 25.0%
!! GAAAAACTTGATTTTCTCTT+TGG + Chr8:2621988-2622007 None:intergenic 25.0%
!! GAAAATCAAGTTTTTCTTTG+TGG - Chr8:2621992-2622011 MsG0880042019.01.T01:intron 25.0%
!! GTACTATGACTTTATTTCAT+AGG + Chr8:2619524-2619543 None:intergenic 25.0%
!! GTTTGAGGAAAATTTTATAG+TGG + Chr8:2619209-2619228 None:intergenic 25.0%
!! TAAGTATCGTAAATATGAGT+TGG - Chr8:2619812-2619831 MsG0880042019.01.T01:intron 25.0%
!! TATTTTGTCATGAGTTAAGT+TGG - Chr8:2619333-2619352 MsG0880042019.01.T01:intron 25.0%
!! TGACTTTAAATGTGAGTTTT+GGG + Chr8:2616862-2616881 None:intergenic 25.0%
!! TTTTGTATATGCAACAGAAT+TGG - Chr8:2623042-2623061 MsG0880042019.01.T01:five_prime_UTR 25.0%
!!! AAAGGTGTTTATATAAGCAA+TGG - Chr8:2618844-2618863 MsG0880042019.01.T01:CDS 25.0%
!!! ATAAAAGGGTGTTTAGATAT+AGG - Chr8:2619706-2619725 MsG0880042019.01.T01:intron 25.0%
!!! ATTTTTTGTTACTGTAGTCA+TGG + Chr8:2622856-2622875 None:intergenic 25.0%
!!! CTTTAAAGTTTGCATCATAA+TGG - Chr8:2619604-2619623 MsG0880042019.01.T01:intron 25.0%
!!! TAAAAGGGTGTTTAGATATA+GGG - Chr8:2619707-2619726 MsG0880042019.01.T01:intron 25.0%
!!! TGTAATTGCTGTTTGTATAA+TGG + Chr8:2618346-2618365 None:intergenic 25.0%
!!! TGTTTAGCATTGACAAAATA+TGG - Chr8:2623153-2623172 MsG0880042019.01.T01:intron 25.0%
!!! TTAACACCTTTATCGATTTT+TGG - Chr8:2618522-2618541 MsG0880042019.01.T01:CDS 25.0%
AAACATGTACATGAACTAGA+TGG - Chr8:2617656-2617675 MsG0880042019.01.T01:intron 30.0%
AAGATGCTTACATATAAGGA+CGG + Chr8:2619673-2619692 None:intergenic 30.0%
AATGGCAAATAGCAAAAAGT+AGG + Chr8:2618323-2618342 None:intergenic 30.0%
ACACTTAGTCCTTCAAATAA+GGG - Chr8:2621691-2621710 MsG0880042019.01.T01:intron 30.0%
ACAGAGGAAATGTCTTAAAT+TGG + Chr8:2623360-2623379 None:intergenic 30.0%
ACATTATCCAAACATAGCTT+TGG - Chr8:2616962-2616981 MsG0880042019.01.T01:intron 30.0%
ACGATGCATAAAATATGCAA+AGG - Chr8:2621357-2621376 MsG0880042019.01.T01:five_prime_UTR 30.0%
ACTCATAATGCTAGACAATT+TGG - Chr8:2621586-2621605 MsG0880042019.01.T01:intron 30.0%
AGTGGACATTGGATAAATTA+GGG + Chr8:2622606-2622625 None:intergenic 30.0%
AGTTAATGCTTTGTGTGAAA+GGG - Chr8:2622042-2622061 MsG0880042019.01.T01:intron 30.0%
ATACTTAAGGATTGGAAAGA+TGG + Chr8:2618471-2618490 None:intergenic 30.0%
ATACTTACGATGTGTATACA+TGG + Chr8:2618495-2618514 None:intergenic 30.0%
ATATGCTCAATTTGCAATCA+TGG - Chr8:2620968-2620987 MsG0880042019.01.T01:intron 30.0%
ATCATTGTCTTGATCATAGT+CGG - Chr8:2622772-2622791 MsG0880042019.01.T01:intron 30.0%
ATGACAATTCTTCTACATAG+TGG - Chr8:2617253-2617272 MsG0880042019.01.T01:intron 30.0%
CAACAATCTTCATCTTAAGT+TGG + Chr8:2621924-2621943 None:intergenic 30.0%
CACTACATCATACACAATTT+CGG - Chr8:2620647-2620666 MsG0880042019.01.T01:intron 30.0%
CATAGGAATTAAATCATGCA+TGG + Chr8:2616405-2616424 None:intergenic 30.0%
CATATATGTTCAATGAATGC+AGG - Chr8:2621852-2621871 MsG0880042019.01.T01:intron 30.0%
CATGGACATATTAACAATCT+AGG + Chr8:2618097-2618116 None:intergenic 30.0%
CTTAAGATGAAGATTGTTGA+TGG - Chr8:2621925-2621944 MsG0880042019.01.T01:intron 30.0%
GAATAAAAATTATTGGGCTG+AGG - Chr8:2617892-2617911 MsG0880042019.01.T01:intron 30.0%
GAGATAAAGAGATCCAAATT+TGG + Chr8:2616630-2616649 None:intergenic 30.0%
GCTCATGTATAAAATGTTTG+AGG + Chr8:2619224-2619243 None:intergenic 30.0%
GGGAGGAGAATAAAAATTAT+TGG - Chr8:2617885-2617904 MsG0880042019.01.T01:intron 30.0%
GTAACTCCTTATATCTAGTT+GGG + Chr8:2619647-2619666 None:intergenic 30.0%
GTGTATACATGGTATACTTA+AGG + Chr8:2618484-2618503 None:intergenic 30.0%
TACATGGTATACTTAAGGAT+TGG + Chr8:2618479-2618498 None:intergenic 30.0%
TAGTTAATGCTTTGTGTGAA+AGG - Chr8:2622041-2622060 MsG0880042019.01.T01:intron 30.0%
TATGCTCAATTTGCAATCAT+GGG - Chr8:2620969-2620988 MsG0880042019.01.T01:intron 30.0%
TGTCTAGCATTATGAGTTAA+GGG + Chr8:2621583-2621602 None:intergenic 30.0%
TTAATTATAAGCATTTCGCC+GGG + Chr8:2619135-2619154 None:intergenic 30.0%
TTCAAATGCTCCCATTTAAA+AGG + Chr8:2618667-2618686 None:intergenic 30.0%
TTGTCTAGCATTATGAGTTA+AGG + Chr8:2621584-2621603 None:intergenic 30.0%
! AAATTTCTTTGGAGGGAATT+GGG + Chr8:2622539-2622558 None:intergenic 30.0%
! ACAATCTTCATCTTAAGTTG+GGG + Chr8:2621922-2621941 None:intergenic 30.0%
! ATCGAAATATGATGGAATGT+CGG - Chr8:2618585-2618604 MsG0880042019.01.T01:intron 30.0%
! ATTTTATATTGGTCAATGGC+TGG - Chr8:2617185-2617204 MsG0880042019.01.T01:intron 30.0%
! CTTAGTTGATATATGGATTC+AGG + Chr8:2620811-2620830 None:intergenic 30.0%
! CTTTATTTCCATATTATGGG+AGG + Chr8:2617433-2617452 None:intergenic 30.0%
! CTTTTCGAAATTTCTTTGGA+GGG + Chr8:2622546-2622565 None:intergenic 30.0%
! GAGAATGATATCTAGAGTAA+AGG + Chr8:2617329-2617348 None:intergenic 30.0%
! GTAGACATTTTATGTATGAG+AGG - Chr8:2623474-2623493 MsG0880042019.01.T01:five_prime_UTR 30.0%
! GTGACTTTAAATGTGAGTTT+TGG + Chr8:2616863-2616882 None:intergenic 30.0%
! GTTTGGATAATGTTTTTCCA+GGG + Chr8:2616955-2616974 None:intergenic 30.0%
! TATTTCGATCCCTTATTTGA+AGG + Chr8:2621703-2621722 None:intergenic 30.0%
! TCCCAATCTTAGTTGATATA+TGG + Chr8:2620818-2620837 None:intergenic 30.0%
! TCTAAACACCCTTTTATTAG+AGG + Chr8:2619703-2619722 None:intergenic 30.0%
! TCTTTTCGAAATTTCTTTGG+AGG + Chr8:2622547-2622566 None:intergenic 30.0%
! TGATTTCTAAGAGAGTAAAC+TGG + Chr8:2622661-2622680 None:intergenic 30.0%
! TGTTTGGATAATGTTTTTCC+AGG + Chr8:2616956-2616975 None:intergenic 30.0%
!! GAACAAAAAAAAGCACCAAA+AGG - Chr8:2622493-2622512 MsG0880042019.01.T01:five_prime_UTR 30.0%
!! TCTAGTTCATGTACATGTTT+TGG + Chr8:2617656-2617675 None:intergenic 30.0%
!! TTGCTGTTTGTATAATGGAA+TGG + Chr8:2618341-2618360 None:intergenic 30.0%
AAAAAACAGAATCGTCGACA+AGG - Chr8:2616669-2616688 MsG0880042019.01.T01:intron 35.0%
AAATGGATGATACAATGCAG+TGG - Chr8:2616485-2616504 MsG0880042019.01.T01:CDS 35.0%
AAGATGGAGAAGACTTTCTT+AGG + Chr8:2618455-2618474 None:intergenic 35.0%
AAGTAAACAGCTAAAACTCG+CGG - Chr8:2618782-2618801 MsG0880042019.01.T01:CDS 35.0%
AAGTTTAGGTCTTTCAAACC+AGG - Chr8:2621185-2621204 MsG0880042019.01.T01:five_prime_UTR 35.0%
AATGGATGATACAATGCAGT+GGG - Chr8:2616486-2616505 MsG0880042019.01.T01:CDS 35.0%
AATGGTACCTCTATTTCATG+TGG - Chr8:2620872-2620891 MsG0880042019.01.T01:intron 35.0%
AATTTGCAGATATGGCTAGT+TGG - Chr8:2622451-2622470 MsG0880042019.01.T01:five_prime_UTR 35.0%
ACCCTTTCTTGGCATAAAAA+TGG - Chr8:2616165-2616184 MsG0880042019.01.T01:three_prime_UTR 35.0%
ACGATTACTTAGTGTCTGTT+TGG - Chr8:2616820-2616839 MsG0880042019.01.T01:intron 35.0%
AGGGGATGATTAATCTTCAA+TGG + Chr8:2623206-2623225 None:intergenic 35.0%
AGTCTCAAAAATTGCCCATA+TGG - Chr8:2617213-2617232 MsG0880042019.01.T01:intron 35.0%
ATAAAATATGCAAAGGTCCG+GGG - Chr8:2621364-2621383 MsG0880042019.01.T01:intron 35.0%
ATAAAATTAGAGGACTCACC+TGG + Chr8:2621206-2621225 None:intergenic 35.0%
ATACATTAAGTTAGGCAGCT+TGG - Chr8:2619469-2619488 MsG0880042019.01.T01:intron 35.0%
ATATCTAGTTGGGAACGATT+TGG + Chr8:2619637-2619656 None:intergenic 35.0%
ATATGGATTCAGGAGTAGTA+AGG + Chr8:2620801-2620820 None:intergenic 35.0%
ATCGTTCCCAACTAGATATA+AGG - Chr8:2619638-2619657 MsG0880042019.01.T01:intron 35.0%
ATTGTGTATGATGTAGTGAG+TGG + Chr8:2620645-2620664 None:intergenic 35.0%
CATAAAATATGCAAAGGTCC+GGG - Chr8:2621363-2621382 MsG0880042019.01.T01:intron 35.0%
CCTCAAAACTTACTTGAACA+TGG + Chr8:2621008-2621027 None:intergenic 35.0%
GACACTTAGTCCTTCAAATA+AGG - Chr8:2621690-2621709 MsG0880042019.01.T01:intron 35.0%
GACATTATTCCCCTTACAAA+TGG - Chr8:2619949-2619968 MsG0880042019.01.T01:intron 35.0%
GAGTAGGTGAGAAATTAATG+TGG - Chr8:2617455-2617474 MsG0880042019.01.T01:intron 35.0%
GAGTGGACATTGGATAAATT+AGG + Chr8:2622607-2622626 None:intergenic 35.0%
GCATAAAATATGCAAAGGTC+CGG - Chr8:2621362-2621381 MsG0880042019.01.T01:five_prime_UTR 35.0%
GGTAACTCCTTATATCTAGT+TGG + Chr8:2619648-2619667 None:intergenic 35.0%
GTGGACATTGGATAAATTAG+GGG + Chr8:2622605-2622624 None:intergenic 35.0%
GTTAATGCTTTGTGTGAAAG+GGG - Chr8:2622043-2622062 MsG0880042019.01.T01:intron 35.0%
TAAATTAGGGGGAGTTATCA+TGG + Chr8:2622593-2622612 None:intergenic 35.0%
TAGGATAACTCACAAGTGAT+TGG + Chr8:2617378-2617397 None:intergenic 35.0%
TATTTCCATATTATGGGAGG+TGG + Chr8:2617430-2617449 None:intergenic 35.0%
TCTTCTCTTATACCCTTTCT+TGG - Chr8:2616154-2616173 MsG0880042019.01.T01:three_prime_UTR 35.0%
TGGAATGCTGTTAAGAACAA+TGG + Chr8:2621968-2621987 None:intergenic 35.0%
TGGACATTGGATAAATTAGG+GGG + Chr8:2622604-2622623 None:intergenic 35.0%
TTCCATCGAATTTCATCTGT+AGG + Chr8:2621434-2621453 None:intergenic 35.0%
TTTCATTGTGAATAGTCCAG+AGG - Chr8:2616546-2616565 MsG0880042019.01.T01:CDS 35.0%
! ACACACTTGATAGTTGGTAT+AGG + Chr8:2617806-2617825 None:intergenic 35.0%
! CCATGTTCAAGTAAGTTTTG+AGG - Chr8:2621005-2621024 MsG0880042019.01.T01:intron 35.0%
! CTGGGAAAACCAAATTTTCT+GGG + Chr8:2622281-2622300 None:intergenic 35.0%
! CTTCATGCTTTTAGTAGTGA+AGG - Chr8:2616909-2616928 MsG0880042019.01.T01:intron 35.0%
! GAAATTTCTTTGGAGGGAAT+TGG + Chr8:2622540-2622559 None:intergenic 35.0%
! GGTACAAACAATGATCCTTT+TGG + Chr8:2622511-2622530 None:intergenic 35.0%
! TTTTACCACCTCCCATAATA+TGG - Chr8:2617422-2617441 MsG0880042019.01.T01:intron 35.0%
!! AGTGATTGGTTCTGTAACAA+TGG + Chr8:2617364-2617383 None:intergenic 35.0%
!! TCGATAAAGGTGTTAAGAGT+TGG + Chr8:2618518-2618537 None:intergenic 35.0%
!!! CATCTGTAGGTCTTTTTTGT+AGG + Chr8:2621421-2621440 None:intergenic 35.0%
!!! GACGATTCTGTTTTTTCCTT+TGG + Chr8:2616665-2616684 None:intergenic 35.0%
!!! GATTCTGTTTTTTCCTTTGG+CGG + Chr8:2616662-2616681 None:intergenic 35.0%
!!! GCCATTTTTATGCCAAGAAA+GGG + Chr8:2616169-2616188 None:intergenic 35.0%
!!! GTTCTTGTCACTTGGTTTTA+TGG - Chr8:2620913-2620932 MsG0880042019.01.T01:intron 35.0%
AACCTGGCATACTTACTGAT+TGG - Chr8:2616194-2616213 MsG0880042019.01.T01:three_prime_UTR 40.0%
ACCTTTGCAGAATTTGATCC+TGG + Chr8:2622300-2622319 None:intergenic 40.0%
AGAACAGACCAAAAGGTGAA+TGG + Chr8:2620898-2620917 None:intergenic 40.0%
AGCAGAGTTGAGCAAAGTTA+AGG - Chr8:2621158-2621177 MsG0880042019.01.T01:intron 40.0%
AGCATCCTCACCATCATATA+TGG + Chr8:2616601-2616620 None:intergenic 40.0%
AGGTACCATTCAGAAGATTG+AGG + Chr8:2620862-2620881 None:intergenic 40.0%
AGTGACAAGAACAGACCAAA+AGG + Chr8:2620905-2620924 None:intergenic 40.0%
ATAAAAATGGCGTCCAAACC+TGG - Chr8:2616178-2616197 MsG0880042019.01.T01:three_prime_UTR 40.0%
ATCAGTAAGTATGCCAGGTT+TGG + Chr8:2616194-2616213 None:intergenic 40.0%
ATCTACTAACCTCACAAGAG+TGG + Chr8:2622624-2622643 None:intergenic 40.0%
CAAGTGATCGAGAAAGCAAT+TGG - Chr8:2616706-2616725 MsG0880042019.01.T01:intron 40.0%
CCAGTGGAGTTTCTTTACTA+TGG - Chr8:2617277-2617296 MsG0880042019.01.T01:intron 40.0%
CCATAGTAAAGAAACTCCAC+TGG + Chr8:2617280-2617299 None:intergenic 40.0%
CCATCATATATGGGAAGATG+AGG + Chr8:2616591-2616610 None:intergenic 40.0%
CCTCATCTTCCCATATATGA+TGG - Chr8:2616588-2616607 MsG0880042019.01.T01:CDS 40.0%
CCTTTGCAGAATTTGATCCT+GGG + Chr8:2622299-2622318 None:intergenic 40.0%
CTTACTTGAACATGGAACCT+TGG + Chr8:2621000-2621019 None:intergenic 40.0%
GACCTACAGATGAAATTCGA+TGG - Chr8:2621429-2621448 MsG0880042019.01.T01:intron 40.0%
GATAACCAGCAATGATGCTA+TGG + Chr8:2618379-2618398 None:intergenic 40.0%
GCATCCTCACCATCATATAT+GGG + Chr8:2616600-2616619 None:intergenic 40.0%
GGATGCTACATGACCAAATT+TGG - Chr8:2616614-2616633 MsG0880042019.01.T01:intron 40.0%
GGGTATAAGAGAAGAGTCAA+AGG + Chr8:2616149-2616168 None:intergenic 40.0%
TAGCGGAAGTCATCTCATTA+AGG - Chr8:2618961-2618980 MsG0880042019.01.T01:CDS 40.0%
TAGGCTATGTGTTCTGCAAA+TGG + Chr8:2618304-2618323 None:intergenic 40.0%
TCTTTGTGGTAGACTTGACA+AGG - Chr8:2622006-2622025 MsG0880042019.01.T01:intron 40.0%
TGAATGGCCACATGAAATAG+AGG + Chr8:2620882-2620901 None:intergenic 40.0%
TGCATCAAATCTAGTCGTGT+TGG - Chr8:2619893-2619912 MsG0880042019.01.T01:intron 40.0%
TGCTTACATATAAGGACGGA+TGG + Chr8:2619669-2619688 None:intergenic 40.0%
TGCTTCAGGTATTATCAGCA+AGG - Chr8:2623299-2623318 MsG0880042019.01.T01:intron 40.0%
TGTGAATAGTCCAGAGGAAA+AGG - Chr8:2616552-2616571 MsG0880042019.01.T01:CDS 40.0%
TTCCTCTGTACTAGCATTTG+TGG - Chr8:2623371-2623390 MsG0880042019.01.T01:intron 40.0%
TTTGGAGGGAATTGGGAAAA+TGG + Chr8:2622532-2622551 None:intergenic 40.0%
TTTGGTCTGTTCTTGTCACT+TGG - Chr8:2620905-2620924 MsG0880042019.01.T01:intron 40.0%
! AACCTAGAGTACTTTGGTAG+TGG - Chr8:2619497-2619516 MsG0880042019.01.T01:intron 40.0%
! ACTACCAAAGTACTCTAGGT+TGG + Chr8:2619498-2619517 None:intergenic 40.0%
! AGATAAGGAGTGCATCTCTT+AGG + Chr8:2619790-2619809 None:intergenic 40.0%
! CACACACTAGTTCTCCATAT+GGG + Chr8:2617230-2617249 None:intergenic 40.0%
! CCTGGGAAAACCAAATTTTC+TGG + Chr8:2622282-2622301 None:intergenic 40.0%
! GATGTAGCAATATAATGGGG+AGG - Chr8:2617868-2617887 MsG0880042019.01.T01:intron 40.0%
! GGAGACTTGCTCAATAGATA+TGG - Chr8:2621874-2621893 MsG0880042019.01.T01:intron 40.0%
! TCTTCCCATATATGATGGTG+AGG - Chr8:2616593-2616612 MsG0880042019.01.T01:CDS 40.0%
! TGAGCTTAGTTCAGTTGGTA+GGG - Chr8:2621334-2621353 MsG0880042019.01.T01:five_prime_UTR 40.0%
! TGCAATCATGGGTTATTCCA+AGG - Chr8:2620980-2620999 MsG0880042019.01.T01:intron 40.0%
! TGTGTGCTCTTTGCTATGAA+TGG + Chr8:2616523-2616542 None:intergenic 40.0%
!! AAGGGTGTTTAGATATAGGG+AGG - Chr8:2619710-2619729 MsG0880042019.01.T01:intron 40.0%
!! TTTGTGTGAAAGGGGTACTA+AGG - Chr8:2622051-2622070 MsG0880042019.01.T01:intron 40.0%
!!! CCAGAAAATTTGGTTTTCCC+AGG - Chr8:2622279-2622298 MsG0880042019.01.T01:intron 40.0%
!!! CGCCATTTTTATGCCAAGAA+AGG + Chr8:2616170-2616189 None:intergenic 40.0%
AACCTCACAAGAGTGGACAT+TGG + Chr8:2622617-2622636 None:intergenic 45.0%
AGCATCCATAGCATCATTGC+TGG - Chr8:2618371-2618390 MsG0880042019.01.T01:intron 45.0%
AGTCGTGAGTCGTGACATTA+AGG + Chr8:2622884-2622903 None:intergenic 45.0%
AGTTGGAGATCAATGTGAGG+AGG - Chr8:2622468-2622487 MsG0880042019.01.T01:five_prime_UTR 45.0%
ATCCAATGTCCACTCTTGTG+AGG - Chr8:2622612-2622631 MsG0880042019.01.T01:intron 45.0%
ATGAACGTCCCAACCTTCTA+AGG + Chr8:2623117-2623136 None:intergenic 45.0%
ATGCCGTGGTTCAAGAGAAA+TGG + Chr8:2618989-2619008 None:intergenic 45.0%
ATTGAGATGCGATATTGCCC+TGG - Chr8:2616935-2616954 MsG0880042019.01.T01:intron 45.0%
ATTGCACGCCTTAGAAGGTT+GGG - Chr8:2623106-2623125 MsG0880042019.01.T01:five_prime_UTR 45.0%
CAAGAAGAGTCATGAGTGCA+TGG - Chr8:2623069-2623088 MsG0880042019.01.T01:five_prime_UTR 45.0%
CATGCACTCATGACTCTTCT+TGG + Chr8:2623071-2623090 None:intergenic 45.0%
CCATATGGAGAACTAGTGTG+TGG - Chr8:2617228-2617247 MsG0880042019.01.T01:intron 45.0%
CCATTCAGAAGATTGAGGTG+AGG + Chr8:2620857-2620876 None:intergenic 45.0%
CCCAGGATCAAATTCTGCAA+AGG - Chr8:2622296-2622315 MsG0880042019.01.T01:five_prime_UTR 45.0%
CCTCACCTCAATCTTCTGAA+TGG - Chr8:2620854-2620873 MsG0880042019.01.T01:intron 45.0%
CCTCGAAGTCCCAGAAAATT+TGG - Chr8:2622269-2622288 MsG0880042019.01.T01:intron 45.0%
CGACACGCTTCGAATAAGAT+TGG - Chr8:2618893-2618912 MsG0880042019.01.T01:CDS 45.0%
GCTAGTTGGAGATCAATGTG+AGG - Chr8:2622465-2622484 MsG0880042019.01.T01:five_prime_UTR 45.0%
GGAAGATGAGGAAGTTACTG+AGG + Chr8:2616579-2616598 None:intergenic 45.0%
GGAATATTGCACGCCTTAGA+AGG - Chr8:2623101-2623120 MsG0880042019.01.T01:five_prime_UTR 45.0%
GGTGTTTAGATATAGGGAGG+AGG - Chr8:2619713-2619732 MsG0880042019.01.T01:intron 45.0%
GTCCCATTTCTCTTGAACCA+CGG - Chr8:2618983-2619002 MsG0880042019.01.T01:intron 45.0%
GTGAGCTTAGTTCAGTTGGT+AGG - Chr8:2621333-2621352 MsG0880042019.01.T01:five_prime_UTR 45.0%
TATTGCACGCCTTAGAAGGT+TGG - Chr8:2623105-2623124 MsG0880042019.01.T01:five_prime_UTR 45.0%
TGCCGTGGTTCAAGAGAAAT+GGG + Chr8:2618988-2619007 None:intergenic 45.0%
TGTGTCAAATGCACCACATC+TGG + Chr8:2620778-2620797 None:intergenic 45.0%
TTCAGAAGATTGAGGTGAGG+AGG + Chr8:2620854-2620873 None:intergenic 45.0%
! ATCTAGTCGTGTTGGTCATG+CGG - Chr8:2619901-2619920 MsG0880042019.01.T01:intron 45.0%
! CCACACACTAGTTCTCCATA+TGG + Chr8:2617231-2617250 None:intergenic 45.0%
! GACCACTACCAAAGTACTCT+AGG + Chr8:2619502-2619521 None:intergenic 45.0%
! GCATACTTACTGATTGGCCA+TGG - Chr8:2616200-2616219 MsG0880042019.01.T01:three_prime_UTR 45.0%
! TCATGTGGCCATTCACCTTT+TGG - Chr8:2620887-2620906 MsG0880042019.01.T01:intron 45.0%
! TTACTGAGGTCCTTTTCCTC+TGG + Chr8:2616565-2616584 None:intergenic 45.0%
! TTTTTCCTTTGGCGGTTCGA+TGG + Chr8:2616654-2616673 None:intergenic 45.0%
!! GATTGTTGATGGCAGTAGCT+TGG - Chr8:2621936-2621955 MsG0880042019.01.T01:intron 45.0%
!! GTGAAAGGGGTACTAAGGTA+TGG - Chr8:2622056-2622075 MsG0880042019.01.T01:intron 45.0%
!! TCTTCTACATAGTGGACCAG+TGG - Chr8:2617261-2617280 MsG0880042019.01.T01:intron 45.0%
!!! CCAAATTTTCTGGGACTTCG+AGG + Chr8:2622272-2622291 None:intergenic 45.0%
!! AAAATATTATAACATTTAAA+TGG + Chr8:2621287-2621306 None:intergenic 5.0%
!! AATAAGATAAAAATTTAATT+CGG - Chr8:2619153-2619172 MsG0880042019.01.T01:intron 5.0%
!! TAAAATAAAAAACAAAAAAT+AGG + Chr8:2617397-2617416 None:intergenic 5.0%
!! TAAAATGTTAAATTAAATAA+AGG + Chr8:2620419-2620438 None:intergenic 5.0%
!!! ATAGTTTTTTTTTTTTTTTT+AGG + Chr8:2617975-2617994 None:intergenic 5.0%
!!! TAGTTTTTTTTTTTTTTTTA+GGG + Chr8:2617974-2617993 None:intergenic 5.0%
ACCACGGCATACTCATCACA+TGG - Chr8:2618999-2619018 MsG0880042019.01.T01:five_prime_UTR 50.0%
AGATTGAGGTGAGGAGGCTA+AGG + Chr8:2620848-2620867 None:intergenic 50.0%
ATGAGTGCATGGCGTATTGC+TGG - Chr8:2623080-2623099 MsG0880042019.01.T01:five_prime_UTR 50.0%
CCAACTGAACTAAGCTCACG+AGG + Chr8:2621332-2621351 None:intergenic 50.0%
CCTCGTGAGCTTAGTTCAGT+TGG - Chr8:2621329-2621348 MsG0880042019.01.T01:five_prime_UTR 50.0%
CGCCACAAATGCTAGTACAG+AGG + Chr8:2623376-2623395 None:intergenic 50.0%
GAAACCTTGAATCTCCCGAG+AGG + Chr8:2616229-2616248 None:intergenic 50.0%
GGCAAGCAAGTCTTCAGCAT+GGG - Chr8:2623174-2623193 MsG0880042019.01.T01:intron 50.0%
GGCCAATCAGTAAGTATGCC+AGG + Chr8:2616199-2616218 None:intergenic 50.0%
GGTTGGGACGTTCATGAATG+TGG - Chr8:2623122-2623141 MsG0880042019.01.T01:five_prime_UTR 50.0%
TCCATGTGATGAGTATGCCG+TGG + Chr8:2619003-2619022 None:intergenic 50.0%
TGATGGCAGTAGCTTGGTTG+TGG - Chr8:2621942-2621961 MsG0880042019.01.T01:intron 50.0%
TGGCAAGCAAGTCTTCAGCA+TGG - Chr8:2623173-2623192 MsG0880042019.01.T01:intron 50.0%
TTAGGGGGAGTTATCATGGC+TGG + Chr8:2622589-2622608 None:intergenic 50.0%
! AGAAGAAGGTGCACCAGATG+TGG - Chr8:2620762-2620781 MsG0880042019.01.T01:intron 50.0%
! GCTGCCAACCTAGAGTACTT+TGG - Chr8:2619491-2619510 MsG0880042019.01.T01:intron 50.0%
! TCTAGTCGTGTTGGTCATGC+GGG - Chr8:2619902-2619921 MsG0880042019.01.T01:intron 50.0%
! TTGTGGTGGAGTTTGAACCC+CGG + Chr8:2621384-2621403 None:intergenic 50.0%
AAGCTCACGAGGACGTCTGT+AGG + Chr8:2621321-2621340 None:intergenic 55.0%
ATTGGCCATGGACACCTCTC+GGG - Chr8:2616212-2616231 MsG0880042019.01.T01:three_prime_UTR 55.0%
GACACCTCTCGGGAGATTCA+AGG - Chr8:2616222-2616241 MsG0880042019.01.T01:three_prime_UTR 55.0%
! GATTGGCCATGGACACCTCT+CGG - Chr8:2616211-2616230 MsG0880042019.01.T01:three_prime_UTR 55.0%
!! AATCTCCCGAGAGGTGTCCA+TGG + Chr8:2616220-2616239 None:intergenic 55.0%
TCTCGCCATCGAACCGCCAA+AGG - Chr8:2616646-2616665 MsG0880042019.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 2616121 2623550 2616121 ID=MsG0880042019.01;Name=MsG0880042019.01
Chr8 mRNA 2616121 2623534 2616121 ID=MsG0880042019.01.T01;Parent=MsG0880042019.01;Name=MsG0880042019.01.T01;_AED=0.29;_eAED=0.29;_QI=826|0.83|1|1|0.33|0.28|7|318|202
Chr8 exon 2622944 2623166 2622944 ID=MsG0880042019.01.T01:exon:1403;Parent=MsG0880042019.01.T01
Chr8 exon 2623428 2623534 2623428 ID=MsG0880042019.01.T01:exon:1402;Parent=MsG0880042019.01.T01
Chr8 five_prime_UTR 2623428 2623534 2623428 ID=MsG0880042019.01.T01:five_prime_utr;Parent=MsG0880042019.01.T01
Chr8 five_prime_UTR 2622944 2623166 2622944 ID=MsG0880042019.01.T01:five_prime_utr;Parent=MsG0880042019.01.T01
Chr8 five_prime_UTR 2622287 2622516 2622287 ID=MsG0880042019.01.T01:five_prime_utr;Parent=MsG0880042019.01.T01
Chr8 five_prime_UTR 2621165 2621381 2621165 ID=MsG0880042019.01.T01:five_prime_utr;Parent=MsG0880042019.01.T01
Chr8 five_prime_UTR 2618984 2619032 2618984 ID=MsG0880042019.01.T01:five_prime_utr;Parent=MsG0880042019.01.T01
Chr8 CDS 2618657 2618983 2618657 ID=MsG0880042019.01.T01:cds;Parent=MsG0880042019.01.T01
Chr8 CDS 2618465 2618572 2618465 ID=MsG0880042019.01.T01:cds;Parent=MsG0880042019.01.T01
Chr8 CDS 2616439 2616612 2616439 ID=MsG0880042019.01.T01:cds;Parent=MsG0880042019.01.T01
Chr8 three_prime_UTR 2616121 2616438 2616121 ID=MsG0880042019.01.T01:three_prime_utr;Parent=MsG0880042019.01.T01
Chr8 mRNA 2616121 2623305 2616121 ID=MsG0880042019.01.T02;Parent=MsG0880042019.01;Name=MsG0880042019.01.T02;_AED=0.29;_eAED=0.29;_QI=858|0.8|1|1|0.4|0.33|6|318|202
Chr8 exon 2622944 2623305 2622944 ID=MsG0880042019.01.T02:exon:1409;Parent=MsG0880042019.01.T02
Chr8 five_prime_UTR 2622944 2623305 2622944 ID=MsG0880042019.01.T02:five_prime_utr;Parent=MsG0880042019.01.T02
Chr8 five_prime_UTR 2622287 2622516 2622287 ID=MsG0880042019.01.T02:five_prime_utr;Parent=MsG0880042019.01.T02
Chr8 five_prime_UTR 2621165 2621381 2621165 ID=MsG0880042019.01.T02:five_prime_utr;Parent=MsG0880042019.01.T02
Chr8 five_prime_UTR 2618984 2619032 2618984 ID=MsG0880042019.01.T02:five_prime_utr;Parent=MsG0880042019.01.T02
Chr8 CDS 2618657 2618983 2618657 ID=MsG0880042019.01.T02:cds;Parent=MsG0880042019.01.T02
Chr8 CDS 2618465 2618572 2618465 ID=MsG0880042019.01.T02:cds;Parent=MsG0880042019.01.T02
Chr8 CDS 2616439 2616612 2616439 ID=MsG0880042019.01.T02:cds;Parent=MsG0880042019.01.T02
Chr8 three_prime_UTR 2616121 2616438 2616121 ID=MsG0880042019.01.T02:three_prime_utr;Parent=MsG0880042019.01.T02
Chr8 mRNA 2622933 2623550 2622933 ID=MsG0880042019.01.T03;Parent=MsG0880042019.01;Name=MsG0880042019.01.T03;_AED=0.47;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|137
Chr8 exon 2623428 2623550 2623428 ID=MsG0880042019.01.T03:exon:1411;Parent=MsG0880042019.01.T03
Chr8 exon 2622933 2623223 2622933 ID=MsG0880042019.01.T03:exon:1410;Parent=MsG0880042019.01.T03
Chr8 CDS 2623428 2623550 2623428 ID=MsG0880042019.01.T03:cds;Parent=MsG0880042019.01.T03
Chr8 CDS 2622933 2623223 2622933 ID=MsG0880042019.01.T03:cds;Parent=MsG0880042019.01.T03
Gene Sequence

>MsG0880042019.01.T03

TTGGTTACAAGATCATGCACACAATCCTTTGACTCTTCTCTTATACCCTTTCTTGGCATAAAAATGGCGTCCAAACCTGGCATACTTACTGATTGGCCATGGACACCTCTCGGGAGATTCAAGTATATAACTTGTATTATTGTTAATTGTTTGTTTGAAAAAATGGATGATACAATGCAGTGGGTGATTTTGACACCATTCATAGCAAAGAGCACACACTCTTTCATTGTGAATAGTCCAGAGGAAAAGGACCTCAGTAACTTCCTCATCTTCCCATATATGATGGTGAGGATGCTACATGACCAAATTTGGATCTCTTTATCTCGCCATCGAACCGCCAAAGGAAAAAACAGAATCGTCGACAAGGCAATCGAGTTTGAACAAGTGATCGAGAAAGCAATTGGTACGAATTAA

>MsG0880042019.01.T01

ATGCCAATTTATGATTACATCTATGGAACTGTTGACAAAGCTTCAGACACATTATATGAAAATTCATTGAAGAAAGAAGAAGGTGCACCAGATGTGGTGCATTTGACACACCTTACTACTCCTGAATCCATATATCAACTAAGATTGGGATTTTCTTCCTTAGCCTCCTCACCTCAATCTTCTGAATGGTACCTCTATTTCATGTGGCCATTCACCTTTTGGTCTGTTCTTGTCACTTGGTTTTATGGCAAAACATTTGTTCTTGAGAGAAACTCTTTTAATATGCTCAATTTGCAATCATGGGTTATTCCAAGGTTCCATGTTCAATATCTTTTTAAATGGCAAAGAGAAACATTGAACAAACTTATAGAAGAAGCAATACTTGAAGCAGAGTTGAGCAAAGTTAAGGTTTTAAGTTTAGGTCTTTCAAACCAGAATTGGCTTCCAAGAAGAGTCATGAGTGCATGGCGTATTGCTGGAATATTGCACGCCTTAGAAGGTTGGGACGTTCATGAATGTGGAGAAGTCATGTTTAGCATTGACAAAATATGGCAAGCAAGTCTTCAGCATGGGTTTAGACCATTGAAGATTAATCATCCCCTTGATTGA

>MsG0880042019.01.T02

ATGCCAATTTATGATTACATCTATGGAACTGTTGACAAAGCTTCAGACACATTATATGAAAATTCATTGAAGAAAGAAGAAGGTGCACCAGATGTGGTGCATTTGACACACCTTACTACTCCTGAATCCATATATCAACTAAGATTGGGATTTTCTTCCTTAGCCTCCTCACCTCAATCTTCTGAATGGTACCTCTATTTCATGTGGCCATTCACCTTTTGGTCTGTTCTTGTCACTTGGTTTTATGGCAAAACATTTGTTCTTGAGAGAAACTCTTTTAATATGCTCAATTTGCAATCATGGGTTATTCCAAGGTTCCATGTTCAATATCTTTTTAAATGGCAAAGAGAAACATTGAACAAACTTATAGAAGAAGCAATACTTGAAGCAGAGTTGAGCAAAGTTAAGGTTTTAAGTTTAGGTCTTTCAAACCAGAATTGGCTTCCAAGAAGAGTCATGAGTGCATGGCGTATTGCTGGAATATTGCACGCCTTAGAAGGTTGGGACGTTCATGAATGTGGAGAAGTCATGTTTAGCATTGACAAAATATGGCAAGCAAGTCTTCAGCATGGGTTTAGACCATTGAAGATTAATCATCCCCTTGATTGA
Protein sequence

>MsG0880042019.01.T03

LVTRSCTQSFDSSLIPFLGIKMASKPGILTDWPWTPLGRFKYITCIIVNCLFEKMDDTMQWVILTPFIAKSTHSFIVNSPEEKDLSNFLIFPYMMVRMLHDQIWISLSRHRTAKGKNRIVDKAIEFEQVIEKAIGTN*

>MsG0880042019.01.T01

MPIYDYIYGTVDKASDTLYENSLKKEEGAPDVVHLTHLTTPESIYQLRLGFSSLASSPQSSEWYLYFMWPFTFWSVLVTWFYGKTFVLERNSFNMLNLQSWVIPRFHVQYLFKWQRETLNKLIEEAILEAELSKVKVLSLGLSNQNWLPRRVMSAWRIAGILHALEGWDVHECGEVMFSIDKIWQASLQHGFRPLKINHPLD*

>MsG0880042019.01.T02

MPIYDYIYGTVDKASDTLYENSLKKEEGAPDVVHLTHLTTPESIYQLRLGFSSLASSPQSSEWYLYFMWPFTFWSVLVTWFYGKTFVLERNSFNMLNLQSWVIPRFHVQYLFKWQRETLNKLIEEAILEAELSKVKVLSLGLSNQNWLPRRVMSAWRIAGILHALEGWDVHECGEVMFSIDKIWQASLQHGFRPLKINHPLD*