AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006217.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006217.01.T01 MTR_1g116170 85.714 91 2 1 40 119 54 144 1.78e-50 158
MsG0180006217.01.T01 MTR_1g116170 82.895 76 2 1 40 104 54 129 2.83e-39 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006217.01.T01 AT2G34860 59.596 99 21 4 41 120 62 160 2.84e-30 107
MsG0180006217.01.T01 AT2G34860 59.596 99 21 4 41 120 62 160 2.84e-30 107

Find 34 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTGGAAACAACATTTAC+TGG 0.235547 1:+101509115 None:intergenic
ATGTGTGTGGTACAGGAAAA+TGG 0.315933 1:-101508870 MsG0180006217.01.T01:intron
CTTGTCTGCCCTGTTTGTTT+AGG 0.322236 1:-101508772 MsG0180006217.01.T01:CDS
ACTGAATGTCCTAATTGTTA+TGG 0.323214 1:-101508805 MsG0180006217.01.T01:CDS
TTTCCTCGACCATAACAATT+AGG 0.345884 1:+101508796 None:intergenic
TGCCCTGTTTGTTTAGGAAC+TGG 0.352275 1:-101508766 MsG0180006217.01.T01:CDS
CGGCAGGATCTCAGGTTGTC+GGG 0.362545 1:-101512315 MsG0180006217.01.T01:CDS
GAAAATGGAAAGCTCTTAAC+AGG 0.369385 1:-101508855 MsG0180006217.01.T01:CDS
TCCCAGTAAATGTTGTTTCC+AGG 0.391160 1:-101509117 MsG0180006217.01.T01:CDS
ACACCAGTTCCTAAACAAAC+AGG 0.409014 1:+101508763 None:intergenic
CTCAGCAATGGGATCATCTT+CGG 0.429472 1:-101512335 None:intergenic
ATCATCTTCGGCAGGATCTC+AGG 0.435568 1:-101512323 MsG0180006217.01.T01:CDS
TCGGCAGGATCTCAGGTTGT+CGG 0.453538 1:-101512316 MsG0180006217.01.T01:CDS
GATAGTGGGAAATTTGATAG+TGG 0.463354 1:-101512286 MsG0180006217.01.T01:CDS
GAACTGGTGTGCCAACAATA+AGG 0.468199 1:-101508750 MsG0180006217.01.T01:CDS
TCCTGAGAAGACCTTATTGT+TGG 0.481047 1:+101508739 None:intergenic
ACCGCTCTTGATAAACCTCC+AGG 0.498198 1:-101509031 MsG0180006217.01.T01:CDS
CCACCACAATTTCTGCAACC+TGG 0.498937 1:+101509013 None:intergenic
GCCAACAATAAGGTCTTCTC+AGG 0.500847 1:-101508740 MsG0180006217.01.T01:CDS
TGCAGAAATTGTGGTGGAAG+TGG 0.524731 1:-101509007 MsG0180006217.01.T01:intron
GTTGTCGGGGTCATTGATAG+TGG 0.538365 1:-101512301 MsG0180006217.01.T01:CDS
GCCTGGAAACAACATTTACT+GGG 0.549950 1:+101509116 None:intergenic
TGTCCTAATTGTTATGGTCG+AGG 0.554383 1:-101508799 MsG0180006217.01.T01:CDS
CCTCCAGGTTGCAGAAATTG+TGG 0.558014 1:-101509016 MsG0180006217.01.T01:CDS
GTTATTTAGTTACTGTACAA+TGG 0.568033 1:-101512264 MsG0180006217.01.T01:intron
ACATTTAAGACATTGACGCC+TGG 0.572047 1:+101509099 None:intergenic
GCAATGGGATCATCTTCGGC+AGG 0.580770 1:-101512331 MsG0180006217.01.T01:CDS
AACAATAAGGTCTTCTCAGG+AGG 0.591980 1:-101508737 MsG0180006217.01.T01:CDS
ACCTGGAGGTTTATCAAGAG+CGG 0.598366 1:+101509030 None:intergenic
TTGTCGGGGTCATTGATAGT+GGG 0.608536 1:-101512300 MsG0180006217.01.T01:CDS
CCACAATTTCTGCAACCTGG+AGG 0.630868 1:+101509016 None:intergenic
CCAGGTTGCAGAAATTGTGG+TGG 0.631837 1:-101509013 MsG0180006217.01.T01:CDS
GGCAGGATCTCAGGTTGTCG+GGG 0.638448 1:-101512314 MsG0180006217.01.T01:CDS
CACCAGTTCCTAAACAAACA+GGG 0.654127 1:+101508764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATGTTAAATTAATA+AGG + Chr1:101510553-101510572 None:intergenic 10.0%
!!! AAAATAAAAAATTGTTGATT+AGG - Chr1:101511562-101511581 MsG0180006217.01.T01:intron 10.0%
!!! AAATAAAAAATTGTTGATTA+GGG - Chr1:101511563-101511582 MsG0180006217.01.T01:intron 10.0%
!!! AGTTTTTTTTTTTTTTTTTG+AGG + Chr1:101511199-101511218 None:intergenic 10.0%
!!! CTAAAAATTTTGTTTTTTTA+GGG - Chr1:101510859-101510878 MsG0180006217.01.T01:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+GGG + Chr1:101511198-101511217 None:intergenic 10.0%
!!! TCTAAAAATTTTGTTTTTTT+AGG - Chr1:101510858-101510877 MsG0180006217.01.T01:intron 10.0%
!! AGACAATAATACTATATAAA+TGG - Chr1:101510398-101510417 MsG0180006217.01.T01:intron 15.0%
!! TAAATAACAAAGGATAATAT+TGG - Chr1:101510595-101510614 MsG0180006217.01.T01:intron 15.0%
!! TATGTATGTATGTTTATATA+CGG - Chr1:101511851-101511870 MsG0180006217.01.T01:intron 15.0%
!! TCAAAATGTAACAATTAAAA+AGG + Chr1:101510457-101510476 None:intergenic 15.0%
!! TCCAATTAAAAGTTAATAAA+GGG + Chr1:101511542-101511561 None:intergenic 15.0%
!! TTAATATCATATATTAATGC+AGG - Chr1:101511901-101511920 MsG0180006217.01.T01:intron 15.0%
!! TTCCAATTAAAAGTTAATAA+AGG + Chr1:101511543-101511562 None:intergenic 15.0%
!! TTGTATTAAAAAATTGTGTA+GGG + Chr1:101511390-101511409 None:intergenic 15.0%
!! TTTGTATTAAAAAATTGTGT+AGG + Chr1:101511391-101511410 None:intergenic 15.0%
!! TTTGTTGCATTAATTAAAAA+TGG + Chr1:101511999-101512018 None:intergenic 15.0%
!!! AATAAAAAATTGTTGATTAG+GGG - Chr1:101511564-101511583 MsG0180006217.01.T01:intron 15.0%
!!! TTATCCTTTGTTATTTATTA+CGG + Chr1:101510592-101510611 None:intergenic 15.0%
!! ATGTAACAATTAAAAAGGAA+CGG + Chr1:101510452-101510471 None:intergenic 20.0%
!! TAGGAATTTATTACCATAAA+AGG - Chr1:101510924-101510943 MsG0180006217.01.T01:intron 20.0%
!!! ACCCTTTATTAACTTTTAAT+TGG - Chr1:101511538-101511557 MsG0180006217.01.T01:intron 20.0%
!!! ATAAAAAATTGTTGATTAGG+GGG - Chr1:101511565-101511584 MsG0180006217.01.T01:intron 20.0%
!!! ATGCATTTTATTAAGAGAAT+CGG + Chr1:101510207-101510226 None:intergenic 20.0%
!!! TACTACTTTTGATTTCATTT+AGG - Chr1:101512163-101512182 MsG0180006217.01.T01:intron 20.0%
!!! TTTCCTATTTTTTTATCAAG+AGG - Chr1:101511056-101511075 MsG0180006217.01.T01:intron 20.0%
! AAAAAATAGGAAATGCTAAC+CGG + Chr1:101511049-101511068 None:intergenic 25.0%
! ACTCCTCTTGATAAAAAAAT+AGG + Chr1:101511062-101511081 None:intergenic 25.0%
! ATTGTCAAAACTCAAATCAA+CGG - Chr1:101510044-101510063 MsG0180006217.01.T01:intron 25.0%
! CATAAAATATACAAGATCAG+AGG + Chr1:101511498-101511517 None:intergenic 25.0%
! GAAACAATTATTCATTGTCT+TGG + Chr1:101510493-101510512 None:intergenic 25.0%
! GTGAAATAAGTTATAAGTCA+TGG - Chr1:101511278-101511297 MsG0180006217.01.T01:intron 25.0%
! GTTATTTAGTTACTGTACAA+TGG - Chr1:101508796-101508815 MsG0180006217.01.T01:CDS 25.0%
! TAAGTAATCTCTAATCTATC+TGG - Chr1:101509255-101509274 MsG0180006217.01.T01:intron 25.0%
! TACAAGTACTACTAAAATTC+TGG - Chr1:101510794-101510813 MsG0180006217.01.T01:intron 25.0%
! TCTTGATAAACCTTAAATGT+TGG + Chr1:101509444-101509463 None:intergenic 25.0%
! TTGGTTAAGAATGTCAAAAA+AGG + Chr1:101511015-101511034 None:intergenic 25.0%
! TTTAACACATCTTTATGAGT+TGG - Chr1:101509149-101509168 MsG0180006217.01.T01:intron 25.0%
!! AACTTCTTTTATCAAACAAC+AGG - Chr1:101511750-101511769 MsG0180006217.01.T01:intron 25.0%
!! TGTTGTTTGATAAAAGAAGT+TGG + Chr1:101511751-101511770 None:intergenic 25.0%
!!! CTCTAATTTTTAAAGCTTCT+GGG + Chr1:101509297-101509316 None:intergenic 25.0%
!!! TCTAATTTTTAAAGCTTCTG+GGG + Chr1:101509296-101509315 None:intergenic 25.0%
!!! TCTCTAATTTTTAAAGCTTC+TGG + Chr1:101509298-101509317 None:intergenic 25.0%
AAATATCAACTCCAATCCAT+AGG + Chr1:101511628-101511647 None:intergenic 30.0%
AAATTAGAGAATGATAGCTC+AGG - Chr1:101509308-101509327 MsG0180006217.01.T01:intron 30.0%
AAGAGACACTTAAAAAGGAA+CGG - Chr1:101510686-101510705 MsG0180006217.01.T01:intron 30.0%
AATTAGAGAATGATAGCTCA+GGG - Chr1:101509309-101509328 MsG0180006217.01.T01:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG - Chr1:101512255-101512274 MsG0180006217.01.T01:intron 30.0%
ACTGGTTAAGCATACAAAAT+AGG - Chr1:101510905-101510924 MsG0180006217.01.T01:intron 30.0%
AGAAAGAAGAAATGTTAGCT+AGG - Chr1:101509748-101509767 MsG0180006217.01.T01:intron 30.0%
AGTTAATAAAGGGTCTTACT+TGG + Chr1:101511532-101511551 None:intergenic 30.0%
ATTAGCAACATTATACGCTT+TGG + Chr1:101510164-101510183 None:intergenic 30.0%
CAATAGTTCTTAGACCAAAT+AGG + Chr1:101509227-101509246 None:intergenic 30.0%
CATACATACATACTTGAAGT+TGG + Chr1:101511843-101511862 None:intergenic 30.0%
CTCTCCGTAATAAATAACAA+AGG - Chr1:101510585-101510604 MsG0180006217.01.T01:intron 30.0%
GAAAGAAGAAATGTTAGCTA+GGG - Chr1:101509749-101509768 MsG0180006217.01.T01:intron 30.0%
GAAGCTAGATATGCATTATT+TGG - Chr1:101509376-101509395 MsG0180006217.01.T01:intron 30.0%
TAACAATTAAAAAGGAACGG+AGG + Chr1:101510449-101510468 None:intergenic 30.0%
TCCAAAAGAGACACTTAAAA+AGG - Chr1:101510681-101510700 MsG0180006217.01.T01:intron 30.0%
TGATATATGATGAGACATAC+TGG - Chr1:101511236-101511255 MsG0180006217.01.T01:intron 30.0%
TGATTATGAGAAAAGAGAAG+AGG + Chr1:101512096-101512115 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG + Chr1:101511748-101511767 None:intergenic 30.0%
TTAGTTACTGTACAATGGTT+CGG - Chr1:101508801-101508820 MsG0180006217.01.T01:CDS 30.0%
! ATTACCAAACAGAGCTTTTT+GGG - Chr1:101511310-101511329 MsG0180006217.01.T01:intron 30.0%
! CTTTGAAAGTGACAGTAAAT+AGG - Chr1:101510645-101510664 MsG0180006217.01.T01:intron 30.0%
! TCTTTTATCAAACAACAGGA+AGG - Chr1:101511754-101511773 MsG0180006217.01.T01:intron 30.0%
! TTAAGTTGCACCAACATTTA+AGG - Chr1:101509431-101509450 MsG0180006217.01.T01:intron 30.0%
!! CTTTGTTATTTATTACGGAG+AGG + Chr1:101510587-101510606 None:intergenic 30.0%
!! GCATTTTAGTATTCAGTTTG+AGG - Chr1:101509887-101509906 MsG0180006217.01.T01:intron 30.0%
!!! CTAATTTTTAAAGCTTCTGG+GGG + Chr1:101509295-101509314 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCTCTTT+TGG + Chr1:101510685-101510704 None:intergenic 30.0%
!!! TTCAGTTTGAGGTGTTTTTT+TGG - Chr1:101509898-101509917 MsG0180006217.01.T01:intron 30.0%
AAAATTGTGTAGGGTACGTT+TGG + Chr1:101511381-101511400 None:intergenic 35.0%
AAGAAATGTTAGCTAGGGAA+TGG - Chr1:101509754-101509773 MsG0180006217.01.T01:intron 35.0%
AATAAAGGGTCTTACTTGGT+TGG + Chr1:101511528-101511547 None:intergenic 35.0%
AATTAAAAAGGAACGGAGGT+AGG + Chr1:101510445-101510464 None:intergenic 35.0%
ACAAATCACAGTGATCAACT+GGG - Chr1:101509859-101509878 MsG0180006217.01.T01:intron 35.0%
AGTAAGTATTAAGTGGGGTT+AGG - Chr1:101510714-101510733 MsG0180006217.01.T01:intron 35.0%
AGTGGAGTAAGTATTAAGTG+GGG - Chr1:101510709-101510728 MsG0180006217.01.T01:intron 35.0%
CTGAATCAGAAAAAGCAGTA+AGG - Chr1:101509118-101509137 MsG0180006217.01.T01:CDS 35.0%
GAAAATGGAAAGCTCTTAAC+AGG - Chr1:101512205-101512224 MsG0180006217.01.T01:intron 35.0%
GAGTGGAGTAAGTATTAAGT+GGG - Chr1:101510708-101510727 MsG0180006217.01.T01:intron 35.0%
GATCATTCTTCAACTTCTCA+CGG + Chr1:101509514-101509533 None:intergenic 35.0%
GTAATCCACTTCTTTCTGTT+TGG + Chr1:101508997-101509016 None:intergenic 35.0%
GTGATGACTATGAAGATGAT+AGG - Chr1:101509645-101509664 MsG0180006217.01.T01:intron 35.0%
TACATACTTGAAGTTGGAAG+AGG + Chr1:101511837-101511856 None:intergenic 35.0%
TAGCTCAGGGATTAAATTAC+AGG - Chr1:101509322-101509341 MsG0180006217.01.T01:intron 35.0%
TAGTTACTGTACAATGGTTC+GGG - Chr1:101508802-101508821 MsG0180006217.01.T01:CDS 35.0%
TATACGCTTTGGTCAAATCA+CGG + Chr1:101510153-101510172 None:intergenic 35.0%
TCATTTAGGTGATATGTGTG+TGG - Chr1:101512177-101512196 MsG0180006217.01.T01:intron 35.0%
TGACACTACTGATCAATATC+TGG + Chr1:101510267-101510286 None:intergenic 35.0%
TGACATTCTTAACCAATACC+CGG - Chr1:101511019-101511038 MsG0180006217.01.T01:intron 35.0%
TGATAAAAGAAGTTGGAGGA+AGG + Chr1:101511744-101511763 None:intergenic 35.0%
TTATCAAGATAAAGCCGTGA+AGG - Chr1:101509455-101509474 MsG0180006217.01.T01:intron 35.0%
TTTCCTCGACCATAACAATT+AGG + Chr1:101512267-101512286 None:intergenic 35.0%
! AAAAATTGTTGATTAGGGGG+TGG - Chr1:101511568-101511587 MsG0180006217.01.T01:intron 35.0%
! AAAATTGTTGATTAGGGGGT+GGG - Chr1:101511569-101511588 MsG0180006217.01.T01:intron 35.0%
! AAGAGAGGTACATAACAGAA+TGG - Chr1:101509481-101509500 MsG0180006217.01.T01:intron 35.0%
! ATCCTATGCTCTTTTGACAA+TGG - Chr1:101511460-101511479 MsG0180006217.01.T01:intron 35.0%
! ATTCGCTATTCGCTTCTTTT+TGG - Chr1:101511350-101511369 MsG0180006217.01.T01:intron 35.0%
! CACTTCTTTCTGTTTGGTTT+GGG + Chr1:101508991-101509010 None:intergenic 35.0%
! CATTACCAAACAGAGCTTTT+TGG - Chr1:101511309-101511328 MsG0180006217.01.T01:intron 35.0%
! CTGTGATTTGTGCTTAAAGT+AGG + Chr1:101509850-101509869 None:intergenic 35.0%
! GTCAACACAGTTTCCTTTTA+TGG + Chr1:101510940-101510959 None:intergenic 35.0%
! TAATGCATATCTAGCTTCTG+CGG + Chr1:101509374-101509393 None:intergenic 35.0%
! TCTAACTTTTACACACGAAG+TGG + Chr1:101510774-101510793 None:intergenic 35.0%
!! GAAGGAGAAAGATTTTAGTG+TGG - Chr1:101509669-101509688 MsG0180006217.01.T01:intron 35.0%
!! GATAGTGGGAAATTTGATAG+TGG - Chr1:101508774-101508793 MsG0180006217.01.T01:CDS 35.0%
!!! CTTACTGCTTTTTCTGATTC+AGG + Chr1:101509120-101509139 None:intergenic 35.0%
AAATTGCAACTCCATTCCGA+TGG + Chr1:101511698-101511717 None:intergenic 40.0%
AACAATAAGGTCTTCTCAGG+AGG - Chr1:101512323-101512342 MsG0180006217.01.T01:CDS 40.0%
AAGATCAGAGGTTCAAACTC+TGG + Chr1:101511486-101511505 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG + Chr1:101512300-101512319 None:intergenic 40.0%
ACACTTAAAAAGGAACGGAG+TGG - Chr1:101510691-101510710 MsG0180006217.01.T01:intron 40.0%
ACATTCTTAACCAATACCCG+GGG - Chr1:101511021-101511040 MsG0180006217.01.T01:intron 40.0%
ACTATGAAGATGATAGGCGA+AGG - Chr1:101509651-101509670 MsG0180006217.01.T01:intron 40.0%
AGGTAAGAGCAGGATAGTTT+AGG + Chr1:101509207-101509226 None:intergenic 40.0%
AGTTACTGTACAATGGTTCG+GGG - Chr1:101508803-101508822 MsG0180006217.01.T01:CDS 40.0%
ATACTTGAAGTTGGAAGAGG+AGG + Chr1:101511834-101511853 None:intergenic 40.0%
ATCACTCTCTTCTTCTCCAT+CGG - Chr1:101511679-101511698 MsG0180006217.01.T01:intron 40.0%
ATCCACTCTTCCTCAAAATC+AGG - Chr1:101511797-101511816 MsG0180006217.01.T01:intron 40.0%
ATCTGTTTCAGCATCCTGTT+AGG + Chr1:101509956-101509975 None:intergenic 40.0%
ATGTGTGTGGTACAGGAAAA+TGG - Chr1:101512190-101512209 MsG0180006217.01.T01:intron 40.0%
CACAAATCACAGTGATCAAC+TGG - Chr1:101509858-101509877 MsG0180006217.01.T01:intron 40.0%
CACCAGTTCCTAAACAAACA+GGG + Chr1:101512299-101512318 None:intergenic 40.0%
CAGGAAGAAGAAGAAGAAGA+TGG - Chr1:101511920-101511939 MsG0180006217.01.T01:intron 40.0%
CCAAACCAAACAGAAAGAAG+TGG - Chr1:101508989-101509008 MsG0180006217.01.T01:intron 40.0%
CCACTTCTTTCTGTTTGGTT+TGG + Chr1:101508992-101509011 None:intergenic 40.0%
CGCTGATATATGATCCTAAC+AGG - Chr1:101509939-101509958 MsG0180006217.01.T01:intron 40.0%
CTATCCTGCTCTTACCTATT+TGG - Chr1:101509210-101509229 MsG0180006217.01.T01:intron 40.0%
GACATTCTTAACCAATACCC+GGG - Chr1:101511020-101511039 MsG0180006217.01.T01:intron 40.0%
GCATTCAACATGTCAGTATC+TGG + Chr1:101509580-101509599 None:intergenic 40.0%
GCCTGGAAACAACATTTACT+GGG + Chr1:101511947-101511966 None:intergenic 40.0%
GGAGTGGAGTAAGTATTAAG+TGG - Chr1:101510707-101510726 MsG0180006217.01.T01:intron 40.0%
GGTACAAAGTCTATCACACT+TGG + Chr1:101511130-101511149 None:intergenic 40.0%
GTGGATTCATTGCCTGTTAT+GGG - Chr1:101509688-101509707 MsG0180006217.01.T01:intron 40.0%
GTTGTAAACAAGCTTGTGCA+TGG + Chr1:101511151-101511170 None:intergenic 40.0%
TAATAGCACGTTCAAGCAGT+AGG + Chr1:101510079-101510098 None:intergenic 40.0%
TACTGACATGTTGAATGCTG+AGG - Chr1:101509582-101509601 MsG0180006217.01.T01:intron 40.0%
TAGACCAAATAGGTAAGAGC+AGG + Chr1:101509217-101509236 None:intergenic 40.0%
TCCTGAGAAGACCTTATTGT+TGG + Chr1:101512324-101512343 None:intergenic 40.0%
TGTAGACAATCCAAGCTAGA+AGG - Chr1:101510100-101510119 MsG0180006217.01.T01:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG - Chr1:101512261-101512280 MsG0180006217.01.T01:intron 40.0%
TGTGGATTCATTGCCTGTTA+TGG - Chr1:101509687-101509706 MsG0180006217.01.T01:intron 40.0%
TGTTAGCTAGGGAATGGAAT+AGG - Chr1:101509760-101509779 MsG0180006217.01.T01:intron 40.0%
TGTTGTTAGCAGGAACACTA+TGG + Chr1:101508891-101508910 None:intergenic 40.0%
TTGACCCAAAAAGCTCTGTT+TGG + Chr1:101511317-101511336 None:intergenic 40.0%
! AAATTGTTGATTAGGGGGTG+GGG - Chr1:101511570-101511589 MsG0180006217.01.T01:intron 40.0%
! AACATGTCAGTATCTGGTTC+AGG + Chr1:101509574-101509593 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG + Chr1:101511964-101511983 None:intergenic 40.0%
! CTCTCTTTTGACCAATTCCA+TGG - Chr1:101511102-101511121 MsG0180006217.01.T01:intron 40.0%
! TTGATAAAAGTACGCCTGTG+AGG + Chr1:101508834-101508853 None:intergenic 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG - Chr1:101511943-101511962 MsG0180006217.01.T01:intron 40.0%
ACCTGGAGGTTTATCAAGAG+CGG + Chr1:101512033-101512052 None:intergenic 45.0%
AGGTGATATGTGTGTGGTAC+AGG - Chr1:101512183-101512202 MsG0180006217.01.T01:intron 45.0%
CACACTTGGTTCCATGGAAT+TGG + Chr1:101511116-101511135 None:intergenic 45.0%
CCATGGTCCTACTAATCTCT+CGG + Chr1:101509077-101509096 None:intergenic 45.0%
CGAGAGATTAGTAGGACCAT+GGG - Chr1:101509075-101509094 MsG0180006217.01.T01:CDS 45.0%
CGCCTGGAAACAACATTTAC+TGG + Chr1:101511948-101511967 None:intergenic 45.0%
CTCTGATTTCTTCCTGCGTT+CGG + Chr1:101508946-101508965 None:intergenic 45.0%
CTTAAAACCTCTTCACCGAG+GGG - Chr1:101509047-101509066 MsG0180006217.01.T01:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG - Chr1:101512288-101512307 MsG0180006217.01.T01:CDS 45.0%
GAACTGGTGTGCCAACAATA+AGG - Chr1:101512310-101512329 MsG0180006217.01.T01:CDS 45.0%
GAGCAGGATAGTTTAGGAAC+TGG + Chr1:101509201-101509220 None:intergenic 45.0%
GCCAACAATAAGGTCTTCTC+AGG - Chr1:101512320-101512339 MsG0180006217.01.T01:CDS 45.0%
GCTTAAAACCTCTTCACCGA+GGG - Chr1:101509046-101509065 MsG0180006217.01.T01:CDS 45.0%
GGAATGGAGTTGCAATTTGC+AGG - Chr1:101511700-101511719 MsG0180006217.01.T01:intron 45.0%
GGTCAAAAGAGAGCTAGAGA+TGG + Chr1:101511095-101511114 None:intergenic 45.0%
GTACCTCTCTTTGTCCTTCA+CGG + Chr1:101509472-101509491 None:intergenic 45.0%
GTCTATCACACTTGGTTCCA+TGG + Chr1:101511122-101511141 None:intergenic 45.0%
GTTAGCAGGAACACTATGGT+GGG + Chr1:101508887-101508906 None:intergenic 45.0%
TCATTGCCTGTTATGGGAGT+TGG - Chr1:101509694-101509713 MsG0180006217.01.T01:intron 45.0%
TCTCTTCTTCTCCATCGGAA+TGG - Chr1:101511684-101511703 MsG0180006217.01.T01:intron 45.0%
TCTTTGCAGAACAGCATCCA+AGG - Chr1:101509024-101509043 MsG0180006217.01.T01:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG - Chr1:101512294-101512313 MsG0180006217.01.T01:CDS 45.0%
TGTTAGCAGGAACACTATGG+TGG + Chr1:101508888-101508907 None:intergenic 45.0%
TTCAGGAATCGCTGTTGAAG+TGG + Chr1:101509557-101509576 None:intergenic 45.0%
TTCCGCGTCTGATCTCTAAA+TGG - Chr1:101509976-101509995 MsG0180006217.01.T01:intron 45.0%
! AATTGTTGATTAGGGGGTGG+GGG - Chr1:101511571-101511590 MsG0180006217.01.T01:intron 45.0%
! AGAGTGGTGTCCTGATTTTG+AGG + Chr1:101511810-101511829 None:intergenic 45.0%
! CACAGTGATCAACTGGGTTT+TGG - Chr1:101509865-101509884 MsG0180006217.01.T01:intron 45.0%
! GGCCATTGTCAAAAGAGCAT+AGG + Chr1:101511465-101511484 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG - Chr1:101512053-101512072 MsG0180006217.01.T01:intron 45.0%
! TGCCATTTAGAGATCAGACG+CGG + Chr1:101509981-101510000 None:intergenic 45.0%
! TTGTCGGGGTCATTGATAGT+GGG - Chr1:101508760-101508779 MsG0180006217.01.T01:CDS 45.0%
!! GTCCTGATTTTGAGGAAGAG+TGG + Chr1:101511802-101511821 None:intergenic 45.0%
!!! GGTGAAGAGGTTTTAAGCCT+TGG + Chr1:101509044-101509063 None:intergenic 45.0%
AAGCCGTGAAGGACAAAGAG+AGG - Chr1:101509466-101509485 MsG0180006217.01.T01:intron 50.0%
ACCGCTCTTGATAAACCTCC+AGG - Chr1:101512029-101512048 MsG0180006217.01.T01:intron 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG + Chr1:101511826-101511845 None:intergenic 50.0%
ATCATCTTCGGCAGGATCTC+AGG - Chr1:101508737-101508756 MsG0180006217.01.T01:CDS 50.0%
CCACAACCACTTCGCATACA+CGG - Chr1:101510239-101510258 MsG0180006217.01.T01:intron 50.0%
CCACAATTTCTGCAACCTGG+AGG + Chr1:101512047-101512066 None:intergenic 50.0%
CCACCACAATTTCTGCAACC+TGG + Chr1:101512050-101512069 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG - Chr1:101512047-101512066 MsG0180006217.01.T01:intron 50.0%
CCGAGAGATTAGTAGGACCA+TGG - Chr1:101509074-101509093 MsG0180006217.01.T01:CDS 50.0%
CCTCCAGGTTGCAGAAATTG+TGG - Chr1:101512044-101512063 MsG0180006217.01.T01:intron 50.0%
CGGATTTAGTGTGGGGTCAA+TGG + Chr1:101510745-101510764 None:intergenic 50.0%
CTTGTTCCAGAGTTCACCCA+TGG + Chr1:101509094-101509113 None:intergenic 50.0%
GAAGCACACGACCTATGGAT+TGG - Chr1:101511614-101511633 MsG0180006217.01.T01:intron 50.0%
GCTAGCACGGATTTAGTGTG+GGG + Chr1:101510752-101510771 None:intergenic 50.0%
GGCAGACTCTCTTCAAACTC+CGG - Chr1:101509603-101509622 MsG0180006217.01.T01:intron 50.0%
GGCTAGCACGGATTTAGTGT+GGG + Chr1:101510753-101510772 None:intergenic 50.0%
GGCTTAAAACCTCTTCACCG+AGG - Chr1:101509045-101509064 MsG0180006217.01.T01:CDS 50.0%
GTCATGTTAACCGTTGCCCT+CGG - Chr1:101510881-101510900 MsG0180006217.01.T01:intron 50.0%
GTTGTCGGGGTCATTGATAG+TGG - Chr1:101508759-101508778 MsG0180006217.01.T01:CDS 50.0%
TACACACGAAGTGGCTAGCA+CGG + Chr1:101510765-101510784 None:intergenic 50.0%
TCAGCACCAACTCCCATAAC+AGG + Chr1:101509703-101509722 None:intergenic 50.0%
TGGCTAGCACGGATTTAGTG+TGG + Chr1:101510754-101510773 None:intergenic 50.0%
TGTATGCTTAACCAGTGCCG+AGG + Chr1:101510901-101510920 None:intergenic 50.0%
TTCCGTGAACTACTCTGCTC+CGG + Chr1:101509625-101509644 None:intergenic 50.0%
! ATTGTTGATTAGGGGGTGGG+GGG - Chr1:101511572-101511591 MsG0180006217.01.T01:intron 50.0%
! CTGGCAGCACAGGATTTTGT+GGG + Chr1:101508860-101508879 None:intergenic 50.0%
! GTATGCTTAACCAGTGCCGA+GGG + Chr1:101510900-101510919 None:intergenic 50.0%
!! GCTGAGACTTTGAGTTGCAG+TGG - Chr1:101509821-101509840 MsG0180006217.01.T01:intron 50.0%
!! TCTGTTTGGTTTGGGTGAGC+AGG + Chr1:101508983-101509002 None:intergenic 50.0%
AAAACCTCTTCACCGAGGGG+AGG - Chr1:101509050-101509069 MsG0180006217.01.T01:CDS 55.0%
AACAACGTGACCGCCTCTGT+CGG - Chr1:101508907-101508926 MsG0180006217.01.T01:intron 55.0%
CCACAAAATCCTGTGCTGCC+AGG - Chr1:101508858-101508877 MsG0180006217.01.T01:CDS 55.0%
CCGTGTATGCGAAGTGGTTG+TGG + Chr1:101510242-101510261 None:intergenic 55.0%
CGGTGTGTAGACACACAGTC+AGG + Chr1:101509354-101509373 None:intergenic 55.0%
CTCCGGAGCAGAGTAGTTCA+CGG - Chr1:101509620-101509639 MsG0180006217.01.T01:intron 55.0%
CTGGATCCGTGTATGCGAAG+TGG + Chr1:101510248-101510267 None:intergenic 55.0%
GGGAGGACCGAGAGATTAGT+AGG - Chr1:101509067-101509086 MsG0180006217.01.T01:CDS 55.0%
GTAGGACCATGGGTGAACTC+TGG - Chr1:101509085-101509104 MsG0180006217.01.T01:CDS 55.0%
TAATCTCTCGGTCCTCCCCT+CGG + Chr1:101509065-101509084 None:intergenic 55.0%
TTAACCAATACCCGGGGCAC+CGG - Chr1:101511027-101511046 MsG0180006217.01.T01:intron 55.0%
! CCTGGCAGCACAGGATTTTG+TGG + Chr1:101508861-101508880 None:intergenic 55.0%
! CTCGTGTCGCTGGAAAGGAA+AGG - Chr1:101510123-101510142 MsG0180006217.01.T01:intron 55.0%
! GAACACTATGGTGGGATGCC+TGG + Chr1:101508879-101508898 None:intergenic 55.0%
! GCGGTCACGTTGTTGTTAGC+AGG + Chr1:101508901-101508920 None:intergenic 55.0%
! GTGGAGAAGCACACGACCTA+TGG - Chr1:101511609-101511628 MsG0180006217.01.T01:intron 55.0%
! TCGGCAGGATCTCAGGTTGT+CGG - Chr1:101508744-101508763 MsG0180006217.01.T01:CDS 55.0%
! TTAACCAGTGCCGAGGGCAA+CGG + Chr1:101510894-101510913 None:intergenic 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG + Chr1:101511736-101511755 None:intergenic 55.0%
ACAACGTGACCGCCTCTGTC+GGG - Chr1:101508908-101508927 MsG0180006217.01.T01:intron 60.0%
AGCTAGAAGGCTCGTGTCGC+TGG - Chr1:101510113-101510132 MsG0180006217.01.T01:intron 60.0%
GAAATGCTAACCGGTGCCCC+GGG + Chr1:101511040-101511059 None:intergenic 60.0%
GGAAATGCTAACCGGTGCCC+CGG + Chr1:101511041-101511060 None:intergenic 60.0%
GGGGGTTGAGAGGAGATACG+TGG - Chr1:101511590-101511609 MsG0180006217.01.T01:intron 60.0%
GGTTCGGGGAGAAACCTCAC+AGG - Chr1:101508817-101508836 MsG0180006217.01.T01:CDS 60.0%
TTAACCGTTGCCCTCGGCAC+TGG - Chr1:101510887-101510906 MsG0180006217.01.T01:intron 60.0%
! CGGCAGGATCTCAGGTTGTC+GGG - Chr1:101508745-101508764 MsG0180006217.01.T01:CDS 60.0%
! GAAGGCTCGTGTCGCTGGAA+AGG - Chr1:101510118-101510137 MsG0180006217.01.T01:intron 60.0%
! GCGACACGAGCCTTCTAGCT+TGG + Chr1:101510113-101510132 None:intergenic 60.0%
! GGCAGGATCTCAGGTTGTCG+GGG - Chr1:101508746-101508765 MsG0180006217.01.T01:CDS 60.0%
CGACGATGGACACCCGACAG+AGG + Chr1:101508923-101508942 None:intergenic 65.0%
CGATGGACACCCGACAGAGG+CGG + Chr1:101508920-101508939 None:intergenic 65.0%
CTAACCGGTGCCCCGGGTAT+TGG + Chr1:101511034-101511053 None:intergenic 65.0%
CTTCCTGCGTTCGGCGACGA+TGG + Chr1:101508937-101508956 None:intergenic 65.0%
TGTCCATCGTCGCCGAACGC+AGG - Chr1:101508931-101508950 MsG0180006217.01.T01:intron 65.0%
TTAGGGGGTGGGGGGTTGAG+AGG - Chr1:101511580-101511599 MsG0180006217.01.T01:intron 65.0%
CGGTCCTCCCCTCGGTGAAG+AGG + Chr1:101509057-101509076 None:intergenic 70.0%
GGTGGGATGCCTGGCAGCAC+AGG + Chr1:101508870-101508889 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101508732 101512350 101508732 ID=MsG0180006217.01;Name=MsG0180006217.01
Chr1 mRNA 101508732 101512350 101508732 ID=MsG0180006217.01.T01;Parent=MsG0180006217.01;Name=MsG0180006217.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0.5|0.66|3|0|127
Chr1 exon 101512265 101512350 101512265 ID=MsG0180006217.01.T01:exon:15088;Parent=MsG0180006217.01.T01
Chr1 exon 101509008 101509159 101509008 ID=MsG0180006217.01.T01:exon:15087;Parent=MsG0180006217.01.T01
Chr1 exon 101508732 101508877 101508732 ID=MsG0180006217.01.T01:exon:15086;Parent=MsG0180006217.01.T01
Chr1 CDS 101512265 101512350 101512265 ID=MsG0180006217.01.T01:cds;Parent=MsG0180006217.01.T01
Chr1 CDS 101509008 101509159 101509008 ID=MsG0180006217.01.T01:cds;Parent=MsG0180006217.01.T01
Chr1 CDS 101508732 101508877 101508732 ID=MsG0180006217.01.T01:cds;Parent=MsG0180006217.01.T01
Gene Sequence

>MsG0180006217.01.T01

ATGGGATCATCTTCGGCAGGATCTCAGGTTGTCGGGGTCATTGATAGTGGGAAATTTGATAGTGGTTATTTAGTTACTGTACAATGGAAGAAGAAGAAGAAGATGGTCCCAGTAAATGTTGTTTCCAGGCGTCAATGTCTTAAATGTTTATGTTCAACTCCATTTTTAATTAATGCAACAAACGCAGCAGCAACCGCTCTTGATAAACCTCCAGGTTGCAGAAATTGTGGTGGAAGTGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCACAAGATTTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAGGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAACAATAAGGTCTTCTCAGGAGGCCTGA

Protein sequence

>MsG0180006217.01.T01

MGSSSAGSQVVGVIDSGKFDSGYLVTVQWKKKKKMVPVNVVSRRQCLKCLCSTPFLINATNAAATALDKPPGCRNCGGSGKWKALNRKRAQDFYEFTECPNCYGRGKLVCPVCLGTGVPTIRSSQEA*