AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043985.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043985.01.T01 MTR_8g045665 40.127 157 39 5 35 137 1 156 1.39e-25 95.5
MsG0880043985.01.T01 MTR_8g045695 39.490 157 40 5 35 137 1 156 2.16e-25 95.1
MsG0880043985.01.T01 MTR_8g045735 37.821 156 42 5 35 136 1 155 1.80e-24 92.8
MsG0880043985.01.T01 MTR_8g045560 38.854 157 41 4 35 137 1 156 3.36e-24 92.0
MsG0880043985.01.T01 MTR_8g045640 38.217 157 42 4 35 137 1 156 1.02e-23 90.9
MsG0880043985.01.T01 MTR_8g045520 66.667 42 14 0 96 137 116 157 2.68e-14 66.2
MsG0880043985.01.T01 MTR_8g045400 64.286 42 15 0 96 137 115 156 3.17e-14 66.2
MsG0880043985.01.T01 MTR_8g045570 75.676 37 9 0 96 132 116 152 3.29e-14 65.9
MsG0880043985.01.T01 MTR_8g045555 75.676 37 9 0 96 132 116 152 4.56e-14 65.9
MsG0880043985.01.T01 MTR_8g045300 65.854 41 14 0 96 136 116 156 6.17e-14 65.5
MsG0880043985.01.T01 MTR_8g045490 65.789 38 13 0 96 133 116 153 5.32e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 28 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGATTCGGTTAAAAT+TGG 0.176765 8:-33844742 MsG0880043985.01.T01:CDS
TTCCCAGCGAGCACCATATT+TGG 0.202241 8:+33844897 None:intergenic
AGAGAAGAAAGAAACAAATA+TGG 0.227238 8:+33844958 None:intergenic
TTAGTAGCACGATGAAGATT+TGG 0.359597 8:+33841665 None:intergenic
TAAAATTGGACTTATGTCAT+AGG 0.375986 8:-33844728 MsG0880043985.01.T01:intron
CACAAACTTTGTGCACTTCG+TGG 0.405990 8:+33844809 None:intergenic
CTACTAAAGCATTAAGTAGA+AGG 0.416138 8:-33841649 MsG0880043985.01.T01:CDS
GGGAAACTTATCACTGAACT+TGG 0.445682 8:-33844879 MsG0880043985.01.T01:CDS
AGGTAGTCCATCCAGCCATT+TGG 0.456227 8:+33842012 None:intergenic
AAAAGCACTAGAGATATTGA+TGG 0.477335 8:-33841985 MsG0880043985.01.T01:CDS
GTCATCTTGTCAAGGGGAAA+AGG 0.479343 8:-33841963 MsG0880043985.01.T01:intron
TTTCCAAATATGGTGCTCGC+TGG 0.484997 8:-33844900 MsG0880043985.01.T01:CDS
GAGAAGAAAGAAACAAATAT+GGG 0.486273 8:+33844959 None:intergenic
ATCGTCACCTTCATGAAGCT+TGG 0.499087 8:+33844771 None:intergenic
CGATTGGCATCACAATGATT+CGG 0.502356 8:-33844752 MsG0880043985.01.T01:CDS
TTCCAAATATGGTGCTCGCT+GGG 0.503897 8:-33844899 MsG0880043985.01.T01:CDS
GAGGATATTGATACTCCAAA+TGG 0.508694 8:-33842027 MsG0880043985.01.T01:CDS
ATATTGATACTCCAAATGGC+TGG 0.546067 8:-33842023 MsG0880043985.01.T01:CDS
AGCTTCATGAAGGTGACGAT+TGG 0.546452 8:-33844768 MsG0880043985.01.T01:CDS
GAACTTGGGATCAAATCACC+TGG 0.560566 8:-33844864 MsG0880043985.01.T01:CDS
TGATACTCCAAATGGCTGGA+TGG 0.568648 8:-33842019 MsG0880043985.01.T01:CDS
ATTGATGGTCATCTTGTCAA+GGG 0.573452 8:-33841970 MsG0880043985.01.T01:CDS
CATCATGCCAAGCTTCATGA+AGG 0.583004 8:-33844778 MsG0880043985.01.T01:CDS
TATTGATGGTCATCTTGTCA+AGG 0.589389 8:-33841971 MsG0880043985.01.T01:CDS
GGAAACTTATCACTGAACTT+GGG 0.624297 8:-33844878 MsG0880043985.01.T01:CDS
AACTTGGGATCAAATCACCT+GGG 0.644416 8:-33844863 MsG0880043985.01.T01:CDS
TGAATATGAGAAGAACAATG+AGG 0.650125 8:-33842046 MsG0880043985.01.T01:CDS
TTGATGGTCATCTTGTCAAG+GGG 0.660704 8:-33841969 MsG0880043985.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATAATATTTAAAA+GGG - Chr8:33842048-33842067 MsG0880043985.01.T01:CDS 0.0%
!! AATAAAATCGATAAAATATT+TGG - Chr8:33843206-33843225 MsG0880043985.01.T01:intron 10.0%
!! ATAAAAAAAAGATATTGATA+AGG + Chr8:33844061-33844080 None:intergenic 10.0%
!! ATTATAAATTAAGTGATTAT+AGG + Chr8:33842940-33842959 None:intergenic 10.0%
!!! CGTATTTAATATTTTTTTAA+AGG - Chr8:33844354-33844373 MsG0880043985.01.T01:intron 10.0%
!!! TTTAAAAAAATACTTTCTTT+TGG + Chr8:33842671-33842690 None:intergenic 10.0%
!! AATAATATAGATTAAGTTAG+TGG + Chr8:33843573-33843592 None:intergenic 15.0%
!!! TAATGTTTCTCATTTTTTTA+AGG - Chr8:33844942-33844961 MsG0880043985.01.T01:CDS 15.0%
!!! TGTATATGGTTTTATTTTTA+AGG + Chr8:33844127-33844146 None:intergenic 15.0%
!!! TTTAATAGTCTTATACATTA+GGG + Chr8:33844093-33844112 None:intergenic 15.0%
!!! TTTTAATAGTCTTATACATT+AGG + Chr8:33844094-33844113 None:intergenic 15.0%
!!! TTTTTATTTCTTTCCAAATA+TGG - Chr8:33841729-33841748 MsG0880043985.01.T01:intron 15.0%
!! AAATTAGTTGTACTAGAAAT+GGG + Chr8:33844185-33844204 None:intergenic 20.0%
!! ATGCAATAAGAATTTGTATA+TGG + Chr8:33844141-33844160 None:intergenic 20.0%
!! TAAGTGTTCATCTTTATTAT+TGG - Chr8:33844770-33844789 MsG0880043985.01.T01:CDS 20.0%
!! TATAATATTTAAAAGGGAAG+AGG - Chr8:33842054-33842073 MsG0880043985.01.T01:CDS 20.0%
!! TTAAACATAACTCTTCATTA+TGG + Chr8:33842310-33842329 None:intergenic 20.0%
!!! AACTAGTTTATTTTCTAGAT+AGG + Chr8:33842435-33842454 None:intergenic 20.0%
!!! TAATATTTACTTTTACGGTT+TGG + Chr8:33843476-33843495 None:intergenic 20.0%
!!! TATTAAATACGTTTTCTCAA+AGG + Chr8:33844345-33844364 None:intergenic 20.0%
!!! TTATCGATTTTATTTCAGAT+TGG + Chr8:33843200-33843219 None:intergenic 20.0%
!!! TTTTGCAGTTTTCAATTTTT+TGG - Chr8:33843231-33843250 MsG0880043985.01.T01:intron 20.0%
!!! TTTTTGCGTTTTTCAATTTT+TGG + Chr8:33843367-33843386 None:intergenic 20.0%
! AAAATTCGATCAGATCTTAA+CGG + Chr8:33843432-33843451 None:intergenic 25.0%
! AAACTATTCAAACTCAACTA+GGG + Chr8:33843775-33843794 None:intergenic 25.0%
! AATTCAATTGATCTGATAAC+TGG - Chr8:33841953-33841972 MsG0880043985.01.T01:intron 25.0%
! ACATGCTTGTTCAATAAAAT+AGG - Chr8:33843120-33843139 MsG0880043985.01.T01:intron 25.0%
! ACATTTATCCATACAAAAGA+AGG + Chr8:33844884-33844903 None:intergenic 25.0%
! ACCAAAAAAATTTACTACCT+CGG + Chr8:33844303-33844322 None:intergenic 25.0%
! AGAGAAGAAAGAAACAAATA+TGG + Chr8:33841684-33841703 None:intergenic 25.0%
! ATAATATTTAGTAAAGGGAG+AGG - Chr8:33842955-33842974 MsG0880043985.01.T01:intron 25.0%
! CAAACACATCCAAAAATATT+TGG + Chr8:33843391-33843410 None:intergenic 25.0%
! CAAATTAGTTGTACTAGAAA+TGG + Chr8:33844186-33844205 None:intergenic 25.0%
! CAATATTAGAACCAAATACA+TGG - Chr8:33842559-33842578 MsG0880043985.01.T01:intron 25.0%
! CATAAACAATAAAAGCCTAA+GGG + Chr8:33843072-33843091 None:intergenic 25.0%
! CATGCTTGTTCAATAAAATA+GGG - Chr8:33843121-33843140 MsG0880043985.01.T01:intron 25.0%
! CTAGTGTTATGTTTGTATAA+TGG - Chr8:33844822-33844841 MsG0880043985.01.T01:CDS 25.0%
! GAGAAGAAAGAAACAAATAT+GGG + Chr8:33841683-33841702 None:intergenic 25.0%
! GATACTTAAAAACGTAAACT+CGG - Chr8:33842828-33842847 MsG0880043985.01.T01:intron 25.0%
! GTCATAAAGACATTTGAATA+AGG - Chr8:33844710-33844729 MsG0880043985.01.T01:intron 25.0%
! TAAAATTGGACTTATGTCAT+AGG - Chr8:33841911-33841930 MsG0880043985.01.T01:intron 25.0%
! TGGAGATATTGAAAACTATA+AGG - Chr8:33844506-33844525 MsG0880043985.01.T01:intron 25.0%
! TTCGAAATAAAAATCACATG+TGG + Chr8:33843710-33843729 None:intergenic 25.0%
!! AGTGTGATTTTATAACTTCA+AGG + Chr8:33843888-33843907 None:intergenic 25.0%
!! ATGACTATTCTGAAAATAGT+CGG + Chr8:33843672-33843691 None:intergenic 25.0%
!! CGCAAAAAACCAAATATTTT+TGG - Chr8:33843379-33843398 MsG0880043985.01.T01:intron 25.0%
!! TTTTGTATGGATAAATGTGT+CGG - Chr8:33844886-33844905 MsG0880043985.01.T01:CDS 25.0%
!!! CAAATATTTTTGGATGTGTT+TGG - Chr8:33843389-33843408 MsG0880043985.01.T01:intron 25.0%
!!! GAACGATTTTTATTTCAGAT+TGG + Chr8:33843345-33843364 None:intergenic 25.0%
!!! GAAGGTAAACTCATTTTTTT+TGG + Chr8:33842792-33842811 None:intergenic 25.0%
!!! GAGAGGTATATAATTTTACA+AGG - Chr8:33842972-33842991 MsG0880043985.01.T01:intron 25.0%
!!! TTCTTTTGGACCATTTTTTT+GGG + Chr8:33842657-33842676 None:intergenic 25.0%
!!! TTTCTTTTGGACCATTTTTT+TGG + Chr8:33842658-33842677 None:intergenic 25.0%
AACATAACTCTTCATTATGG+TGG + Chr8:33842307-33842326 None:intergenic 30.0%
AGAAAATCGACCCAAAAAAA+TGG - Chr8:33842644-33842663 MsG0880043985.01.T01:intron 30.0%
ATTGAAAACACTTTATCGTC+TGG + Chr8:33842543-33842562 None:intergenic 30.0%
CCATACAAAAGAAGGATTAA+GGG + Chr8:33844876-33844895 None:intergenic 30.0%
CTAGTTAACAAGGTGAAATT+GGG + Chr8:33843099-33843118 None:intergenic 30.0%
GAAACTATTCAAACTCAACT+AGG + Chr8:33843776-33843795 None:intergenic 30.0%
GACATTAATTTCAGTACCTT+GGG - Chr8:33842596-33842615 MsG0880043985.01.T01:intron 30.0%
GACATTTGAATAAGGAGTTA+TGG - Chr8:33844718-33844737 MsG0880043985.01.T01:intron 30.0%
GCATAAACAATAAAAGCCTA+AGG + Chr8:33843073-33843092 None:intergenic 30.0%
GTTTACGATTCGATTTACAT+AGG + Chr8:33842159-33842178 None:intergenic 30.0%
TAAACGTAAACTCGTAAACA+CGG - Chr8:33842687-33842706 MsG0880043985.01.T01:intron 30.0%
TCCATACAAAAGAAGGATTA+AGG + Chr8:33844877-33844896 None:intergenic 30.0%
TGAATATGAGAAGAACAATG+AGG - Chr8:33844593-33844612 MsG0880043985.01.T01:intron 30.0%
TGCTATTGATATAATTGCCT+CGG - Chr8:33844393-33844412 MsG0880043985.01.T01:intron 30.0%
TGTACTAGAAATGGGTATAT+TGG + Chr8:33844177-33844196 None:intergenic 30.0%
TTACATAGGTAAACAAGTTG+AGG + Chr8:33842145-33842164 None:intergenic 30.0%
! CTACTAAAGCATTAAGTAGA+AGG - Chr8:33844990-33845009 MsG0880043985.01.T01:CDS 30.0%
! CTAGTACAACTAATTTGTCT+TGG - Chr8:33844189-33844208 MsG0880043985.01.T01:intron 30.0%
! GTAGAGAAGCACAAAATATA+TGG + Chr8:33843024-33843043 None:intergenic 30.0%
! TGCGTTATTATGTTACTTGT+TGG - Chr8:33843529-33843548 MsG0880043985.01.T01:intron 30.0%
!! AAAAGCACTAGAGATATTGA+TGG - Chr8:33844654-33844673 MsG0880043985.01.T01:intron 30.0%
!! CACAATGATTCGGTTAAAAT+TGG - Chr8:33841897-33841916 MsG0880043985.01.T01:intron 30.0%
!! TATTTTTGTGTCAAGATGTG+AGG + Chr8:33843958-33843977 None:intergenic 30.0%
!! TGGGAAGTTTTATGATATGA+TGG + Chr8:33841664-33841683 None:intergenic 30.0%
!!! AACTTGTGAACTTGCTTTTT+TGG + Chr8:33842394-33842413 None:intergenic 30.0%
!!! ACCGAGGTAGTAAATTTTTT+TGG - Chr8:33844299-33844318 MsG0880043985.01.T01:intron 30.0%
!!! CAATTCTTTTTTAAAGCCCA+AGG + Chr8:33842615-33842634 None:intergenic 30.0%
!!! TTTACTTTTACGGTTTGGTT+CGG + Chr8:33843471-33843490 None:intergenic 30.0%
AAATCACATGTGGATCAGTT+CGG + Chr8:33843700-33843719 None:intergenic 35.0%
AAGATCACTTACAAGCTGTT+TGG - Chr8:33844483-33844502 MsG0880043985.01.T01:intron 35.0%
ACTCTTGTAAAAAGTTACCG+AGG - Chr8:33844283-33844302 MsG0880043985.01.T01:intron 35.0%
ATATTGATACTCCAAATGGC+TGG - Chr8:33844616-33844635 MsG0880043985.01.T01:intron 35.0%
CCAATTTCACCTTGTTAACT+AGG - Chr8:33843097-33843116 MsG0880043985.01.T01:intron 35.0%
CCTAGTTAACAAGGTGAAAT+TGG + Chr8:33843100-33843119 None:intergenic 35.0%
CGACATTAATTTCAGTACCT+TGG - Chr8:33842595-33842614 MsG0880043985.01.T01:intron 35.0%
GAATAAGGAGTTATGGTTCA+AGG - Chr8:33844725-33844744 MsG0880043985.01.T01:intron 35.0%
GAGGATATTGATACTCCAAA+TGG - Chr8:33844612-33844631 MsG0880043985.01.T01:intron 35.0%
GGAAACTTATCACTGAACTT+GGG - Chr8:33841761-33841780 MsG0880043985.01.T01:intron 35.0%
TAAGAAAACTACCAAACCGA+TGG + Chr8:33843046-33843065 None:intergenic 35.0%
TAGTTTGAAAAACTTCTCCC+AGG + Chr8:33841796-33841815 None:intergenic 35.0%
TCAAAAACGTGTTAACTCGA+AGG + Chr8:33842810-33842829 None:intergenic 35.0%
TTAGTAGCACGATGAAGATT+TGG + Chr8:33844977-33844996 None:intergenic 35.0%
! ACGAGTTAACACTTGATTTG+TGG - Chr8:33842859-33842878 MsG0880043985.01.T01:intron 35.0%
! ATGTTAACCCATGCTTGTTA+GGG - Chr8:33843304-33843323 MsG0880043985.01.T01:intron 35.0%
! ATTGATGGTCATCTTGTCAA+GGG - Chr8:33844669-33844688 MsG0880043985.01.T01:intron 35.0%
! ATTTTGTGCTTCTCTACCAT+CGG - Chr8:33843027-33843046 MsG0880043985.01.T01:intron 35.0%
! CCCTTAATCCTTCTTTTGTA+TGG - Chr8:33844873-33844892 MsG0880043985.01.T01:CDS 35.0%
! GTAGTTTTCTTATGACCCTT+AGG - Chr8:33843054-33843073 MsG0880043985.01.T01:intron 35.0%
! GTTAACATGGGTTGAGTTTA+GGG + Chr8:33843292-33843311 None:intergenic 35.0%
! TAACAAGCATGGGTTAACAT+GGG + Chr8:33843304-33843323 None:intergenic 35.0%
! TATCTCTAGTGCTTTTGCTA+AGG + Chr8:33844650-33844669 None:intergenic 35.0%
! TATTGATGGTCATCTTGTCA+AGG - Chr8:33844668-33844687 MsG0880043985.01.T01:intron 35.0%
! TCGGTAACTTTTTACAAGAG+TGG + Chr8:33844284-33844303 None:intergenic 35.0%
!! ACACTTGATTTGTGGAAAAC+TGG - Chr8:33842867-33842886 MsG0880043985.01.T01:intron 35.0%
!! ATTATAGGTTCTAAACCCAG+AGG + Chr8:33842925-33842944 None:intergenic 35.0%
!! GACTCTGATGGATTAAACTT+GGG + Chr8:33842894-33842913 None:intergenic 35.0%
!! TGACTCTGATGGATTAAACT+TGG + Chr8:33842895-33842914 None:intergenic 35.0%
!! TTATAGGTTCTAAACCCAGA+GGG + Chr8:33842924-33842943 None:intergenic 35.0%
!!! TGTGAACTTGCTTTTTTGGA+TGG + Chr8:33842390-33842409 None:intergenic 35.0%
AACTTGGGATCAAATCACCT+GGG - Chr8:33841776-33841795 MsG0880043985.01.T01:intron 40.0%
ATCACTTACAAGCTGTTTGG+TGG - Chr8:33844486-33844505 MsG0880043985.01.T01:intron 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG - Chr8:33844565-33844584 MsG0880043985.01.T01:intron 40.0%
CAAGCATGTCCTAGTTAACA+AGG + Chr8:33843109-33843128 None:intergenic 40.0%
CACTAGAGAAGACCACATTA+TGG - Chr8:33842085-33842104 MsG0880043985.01.T01:intron 40.0%
CATGTTAACCCATGCTTGTT+AGG - Chr8:33843303-33843322 MsG0880043985.01.T01:intron 40.0%
CGAGTTACACGTGTTAAACT+CGG + Chr8:33842741-33842760 None:intergenic 40.0%
CGAGTTTAACACGTGTAACT+CGG - Chr8:33842739-33842758 MsG0880043985.01.T01:intron 40.0%
CGATTGGCATCACAATGATT+CGG - Chr8:33841887-33841906 MsG0880043985.01.T01:intron 40.0%
GGGAAACTTATCACTGAACT+TGG - Chr8:33841760-33841779 MsG0880043985.01.T01:intron 40.0%
GTGAGTTCAAGCCATGTATT+TGG + Chr8:33842573-33842592 None:intergenic 40.0%
TGAACATCCCTAACAAGCAT+GGG + Chr8:33843314-33843333 None:intergenic 40.0%
TTGAACATCCCTAACAAGCA+TGG + Chr8:33843315-33843334 None:intergenic 40.0%
! CTAACAAGCATGGGTTAACA+TGG + Chr8:33843305-33843324 None:intergenic 40.0%
! GGTTAACATGGGTTGAGTTT+AGG + Chr8:33843293-33843312 None:intergenic 40.0%
! TTGATGGTCATCTTGTCAAG+GGG - Chr8:33844670-33844689 MsG0880043985.01.T01:intron 40.0%
!! CATCTTAGAAGTGCTTACCA+AGG - Chr8:33844539-33844558 MsG0880043985.01.T01:intron 40.0%
!!! GTTCAAGGAGTTGGCTTTTA+TGG - Chr8:33844740-33844759 MsG0880043985.01.T01:CDS 40.0%
AATGTGTCGGAGATGTCTTG+AGG - Chr8:33844899-33844918 MsG0880043985.01.T01:CDS 45.0%
ACATGTGGATCAGTTCGGTT+TGG + Chr8:33843695-33843714 None:intergenic 45.0%
ACATTATGGAGTCGCAAGCA+AGG - Chr8:33842099-33842118 MsG0880043985.01.T01:intron 45.0%
AGCTTCATGAAGGTGACGAT+TGG - Chr8:33841871-33841890 MsG0880043985.01.T01:intron 45.0%
ATCGTCACCTTCATGAAGCT+TGG + Chr8:33841871-33841890 None:intergenic 45.0%
CACAAACTTTGTGCACTTCG+TGG + Chr8:33841833-33841852 None:intergenic 45.0%
CATCATGCCAAGCTTCATGA+AGG - Chr8:33841861-33841880 MsG0880043985.01.T01:intron 45.0%
CTCGGTAAACTCGTGTAAAC+CGG + Chr8:33842723-33842742 None:intergenic 45.0%
GAACTTGGGATCAAATCACC+TGG - Chr8:33841775-33841794 MsG0880043985.01.T01:intron 45.0%
GGAGTTATGGTTCAAGGAGT+TGG - Chr8:33844731-33844750 MsG0880043985.01.T01:CDS 45.0%
GGTACACACATGCAATGAGA+AGG - Chr8:33844434-33844453 MsG0880043985.01.T01:intron 45.0%
GTCATCTTGTCAAGGGGAAA+AGG - Chr8:33844676-33844695 MsG0880043985.01.T01:intron 45.0%
TAAACACGGTCGAGTTTACC+CGG - Chr8:33842701-33842720 MsG0880043985.01.T01:intron 45.0%
TCGGTAAACTCGTGTAAACC+GGG + Chr8:33842722-33842741 None:intergenic 45.0%
TGATACTCCAAATGGCTGGA+TGG - Chr8:33844620-33844639 MsG0880043985.01.T01:intron 45.0%
TTCCAAATATGGTGCTCGCT+GGG - Chr8:33841740-33841759 MsG0880043985.01.T01:intron 45.0%
TTGCTTGCGACTCCATAATG+TGG + Chr8:33842100-33842119 None:intergenic 45.0%
TTTCCAAATATGGTGCTCGC+TGG - Chr8:33841739-33841758 MsG0880043985.01.T01:intron 45.0%
!! AATTTATAATATTTAGTAAA+GGG - Chr8:33842950-33842969 MsG0880043985.01.T01:intron 5.0%
!! CTTAATTTATAATATTTAAA+AGG - Chr8:33842047-33842066 MsG0880043985.01.T01:CDS 5.0%
!! TAATTTATAATATTTAGTAA+AGG - Chr8:33842949-33842968 MsG0880043985.01.T01:intron 5.0%
!!! ATTATTAATATTTACTTTTA+CGG + Chr8:33843481-33843500 None:intergenic 5.0%
!!! TAATAAAAAATTATTTTAGA+TGG + Chr8:33843162-33843181 None:intergenic 5.0%
!!! TTTTTTTGTTTTTTTTTAAT+CGG + Chr8:33843811-33843830 None:intergenic 5.0%
AGCAGAACTTCCATCAGCCT+TGG + Chr8:33844559-33844578 None:intergenic 50.0%
AGGTAGTCCATCCAGCCATT+TGG + Chr8:33844630-33844649 None:intergenic 50.0%
CAGAGTCAGACAAACCCTCT+GGG - Chr8:33842907-33842926 MsG0880043985.01.T01:intron 50.0%
GAGGGTTTGTCTGACTCTGA+TGG + Chr8:33842906-33842925 None:intergenic 50.0%
TCAGAGTCAGACAAACCCTC+TGG - Chr8:33842906-33842925 MsG0880043985.01.T01:intron 50.0%
TGCCTCGGACATAACACAGA+CGG - Chr8:33844408-33844427 MsG0880043985.01.T01:intron 50.0%
TTCCCAGCGAGCACCATATT+TGG + Chr8:33841745-33841764 None:intergenic 50.0%
! CAACTAGGGTGTTCGCGATT+TGG + Chr8:33843761-33843780 None:intergenic 50.0%
! GAAGTGCTTACCAAGGCTGA+TGG - Chr8:33844546-33844565 MsG0880043985.01.T01:intron 50.0%
! GTGCTTCTCTACCATCGGTT+TGG - Chr8:33843032-33843051 MsG0880043985.01.T01:intron 50.0%
CACCGTCTGTGTTATGTCCG+AGG + Chr8:33844413-33844432 None:intergenic 55.0%
CGGACATAACACAGACGGTG+AGG - Chr8:33844413-33844432 MsG0880043985.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 33841646 33845015 33841646 ID=MsG0880043985.01;Name=MsG0880043985.01
Chr8 mRNA 33841646 33845015 33841646 ID=MsG0880043985.01.T01;Parent=MsG0880043985.01;Name=MsG0880043985.01.T01;_AED=0.50;_eAED=0.62;_QI=0|0|0|1|0.5|0.33|3|0|150
Chr8 exon 33844729 33845015 33844729 ID=MsG0880043985.01.T01:exon:10287;Parent=MsG0880043985.01.T01
Chr8 exon 33841964 33842077 33841964 ID=MsG0880043985.01.T01:exon:10286;Parent=MsG0880043985.01.T01
Chr8 exon 33841646 33841697 33841646 ID=MsG0880043985.01.T01:exon:10285;Parent=MsG0880043985.01.T01
Chr8 CDS 33844729 33845015 33844729 ID=MsG0880043985.01.T01:cds;Parent=MsG0880043985.01.T01
Chr8 CDS 33841964 33842077 33841964 ID=MsG0880043985.01.T01:cds;Parent=MsG0880043985.01.T01
Chr8 CDS 33841646 33841697 33841646 ID=MsG0880043985.01.T01:cds;Parent=MsG0880043985.01.T01
Gene Sequence

>MsG0880043985.01.T01

ATGTGGTTTCATTCACCATCATATCATAAAACTTCCCATATTTGTTTCTTTCTTCTCTTTCTTTCTATTATTGTGAATTTAGTTTTTTATTTCTTTCCAAATATGGTGCTCGCTGGGAAACTTATCACTGAACTTGGGATCAAATCACCTGGGAGAAGTTTTTCAAACTATTTTCATCAGAACTCCACGAAGTGCACAAAGTTTGTGAAAGAGTTCATCATGCCAAGCTTCATGAAGGTGACGATTGGCATCACAATGATTCGGTTAAAATTGGACTTATGTCATAGATGGACTATTGAATATGAGAAGAACAATGAGGATATTGATACTCCAAATGGCTGGATGGACTACCTTAGCAAAAGCACTAGAGATATTGATGGTCATCTTGTCAAGGGGAAAAGGTTTAGTTTGCCAAATCTTCATCGTGCTACTAAAGCATTAAGTAGAAGGTAG
Protein sequence

>MsG0880043985.01.T01

MWFHSPSYHKTSHICFFLLFLSIIVNLVFYFFPNMVLAGKLITELGIKSPGRSFSNYFHQNSTKCTKFVKEFIMPSFMKVTIGITMIRLKLDLCHRWTIEYEKNNEDIDTPNGWMDYLSKSTRDIDGHLVKGKRFSLPNLHRATKALSRR*