Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043994.01.T01 | XP_013445246.1 | 91.667 | 96 | 8 | 0 | 23 | 118 | 61 | 156 | 2.03E-56 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043994.01.T01 | P85524 | 42.697 | 89 | 49 | 2 | 25 | 112 | 63 | 150 | 2.57E-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043994.01.T01 | I3SJ62 | 91.667 | 96 | 8 | 0 | 23 | 118 | 61 | 156 | 9.69e-57 | 182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048461.01 | MsG0880043994.01 | 0.813389 | 2.624073e-51 | 1.711426e-48 |
| MsG0180000195.01 | MsG0880043994.01 | 0.808499 | 3.005961e-50 | 1.721503e-47 |
| MsG0180000334.01 | MsG0880043994.01 | 0.837903 | 3.950149e-57 | 5.204907e-54 |
| MsG0180001117.01 | MsG0880043994.01 | 0.813077 | 3.071550e-51 | 1.986168e-48 |
| MsG0180001173.01 | MsG0880043994.01 | 0.811088 | 8.337799e-51 | 5.113861e-48 |
| MsG0180001565.01 | MsG0880043994.01 | 0.805236 | 1.471302e-49 | 7.743586e-47 |
| MsG0180001566.01 | MsG0880043994.01 | 0.813160 | 2.945407e-51 | 1.908849e-48 |
| MsG0180001687.01 | MsG0880043994.01 | 0.817743 | 2.814192e-52 | 2.066727e-49 |
| MsG0180002273.01 | MsG0880043994.01 | 0.809906 | 1.500843e-50 | 8.921800e-48 |
| MsG0880043971.01 | MsG0880043994.01 | 0.810618 | 1.053851e-50 | 6.383154e-48 |
| MsG0880043975.01 | MsG0880043994.01 | 0.844944 | 5.524320e-59 | 9.062005e-56 |
| MsG0880043985.01 | MsG0880043994.01 | 0.841878 | 3.637782e-58 | 5.419192e-55 |
| MsG0880043992.01 | MsG0880043994.01 | 0.958233 | 3.910562e-116 | 1.424176e-110 |
| MsG0880043994.01 | MsG0880043996.01 | 0.836491 | 9.073369e-57 | 1.145196e-53 |
| MsG0880043994.01 | MsG0880044025.01 | 0.860124 | 2.570643e-63 | 6.952277e-60 |
| MsG0880043994.01 | MsG0880044237.01 | 0.820731 | 5.873415e-53 | 4.685116e-50 |
| MsG0880043994.01 | MsG0880044510.01 | 0.810439 | 1.152006e-50 | 6.944001e-48 |
| MsG0880043994.01 | MsG0880044782.01 | 0.813071 | 3.082017e-51 | 1.992576e-48 |
| MsG0880043994.01 | MsG0880045294.01 | 0.816098 | 6.586432e-52 | 4.624125e-49 |
| MsG0880043994.01 | MsG0880045372.01 | 0.813001 | 3.192720e-51 | 2.060378e-48 |
| MsG0880043994.01 | MsG0880046027.01 | 0.833188 | 6.156027e-56 | 7.036868e-53 |
| MsG0880043994.01 | MsG0880046762.01 | 0.813836 | 2.092122e-51 | 1.381047e-48 |
| MsG0180004754.01 | MsG0880043994.01 | 0.821663 | 3.582777e-53 | 2.933249e-50 |
| MsG0180005445.01 | MsG0880043994.01 | 0.815456 | 9.159034e-52 | 6.318106e-49 |
| MsG0280006337.01 | MsG0880043994.01 | 0.820379 | 7.076990e-53 | 5.590841e-50 |
| MsG0780040261.01 | MsG0880043994.01 | 0.803048 | 4.197289e-49 | 2.088184e-46 |
| MsG0780040926.01 | MsG0880043994.01 | 0.826696 | 2.354393e-54 | 2.224240e-51 |
| MsG0880041986.01 | MsG0880043994.01 | 0.824554 | 7.579686e-54 | 6.736723e-51 |
| MsG0280010779.01 | MsG0880043994.01 | 0.807828 | 4.177859e-50 | 2.350670e-47 |
| MsG0280010907.01 | MsG0880043994.01 | 0.862257 | 5.761490e-64 | 1.676642e-60 |
| MsG0280011034.01 | MsG0880043994.01 | 0.800964 | 1.125697e-48 | 5.312242e-46 |
| MsG0280011258.01 | MsG0880043994.01 | 0.803114 | 4.067604e-49 | 2.027079e-46 |
| MsG0280011282.01 | MsG0880043994.01 | 0.830652 | 2.603283e-55 | 2.759973e-52 |
| MsG0280011388.01 | MsG0880043994.01 | 0.807740 | 4.360537e-50 | 2.447978e-47 |
| MsG0380013548.01 | MsG0880043994.01 | 0.800829 | 1.199650e-48 | 5.641519e-46 |
| MsG0380014778.01 | MsG0880043994.01 | 0.801021 | 1.096034e-48 | 5.179819e-46 |
| MsG0680030865.01 | MsG0880043994.01 | 0.802706 | 4.939205e-49 | 2.436110e-46 |
| MsG0680031549.01 | MsG0880043994.01 | 0.822210 | 2.675548e-53 | 2.224914e-50 |
| MsG0680031617.01 | MsG0880043994.01 | 0.803255 | 3.804506e-49 | 1.902855e-46 |
| MsG0480019276.01 | MsG0880043994.01 | 0.811867 | 5.647689e-51 | 3.535771e-48 |
| MsG0480020675.01 | MsG0880043994.01 | 0.807467 | 4.983271e-50 | 2.777835e-47 |
| MsG0480020739.01 | MsG0880043994.01 | 0.802785 | 4.757510e-49 | 2.351242e-46 |
| MsG0480020780.01 | MsG0880043994.01 | 0.800259 | 1.567451e-48 | 7.265343e-46 |
| MsG0480020909.01 | MsG0880043994.01 | 0.811428 | 7.036344e-51 | 4.354539e-48 |
| MsG0480021778.01 | MsG0880043994.01 | 0.811627 | 6.370760e-51 | 3.962998e-48 |
| MsG0480022620.01 | MsG0880043994.01 | 0.804688 | 1.915931e-49 | 9.942651e-47 |
| MsG0480022855.01 | MsG0880043994.01 | 0.821724 | 3.468344e-53 | 2.844437e-50 |
| MsG0480023463.01 | MsG0880043994.01 | 0.834401 | 3.062834e-56 | 3.630813e-53 |
| MsG0480023620.01 | MsG0880043994.01 | 0.808377 | 3.190571e-50 | 1.821469e-47 |
| MsG0580024418.01 | MsG0880043994.01 | 0.800844 | 1.191064e-48 | 5.603454e-46 |
| MsG0580026059.01 | MsG0880043994.01 | 0.815770 | 7.796554e-52 | 5.424889e-49 |
| MsG0380015196.01 | MsG0880043994.01 | 0.802386 | 5.749664e-49 | 2.812924e-46 |
| MsG0380015332.01 | MsG0880043994.01 | 0.809269 | 2.057005e-50 | 1.202303e-47 |
| MsG0380015548.01 | MsG0880043994.01 | 0.800220 | 1.596509e-48 | 7.392698e-46 |
| MsG0380015677.01 | MsG0880043994.01 | 0.808114 | 3.630268e-50 | 2.058103e-47 |
| MsG0380016131.01 | MsG0880043994.01 | 0.813747 | 2.188145e-51 | 1.440946e-48 |
| MsG0380016200.01 | MsG0880043994.01 | 0.832558 | 8.825616e-56 | 9.900165e-53 |
| MsG0380016247.01 | MsG0880043994.01 | 0.825258 | 5.170223e-54 | 4.688649e-51 |
| MsG0380016517.01 | MsG0880043994.01 | 0.801873 | 7.331807e-49 | 3.540333e-46 |
| MsG0380016703.01 | MsG0880043994.01 | 0.809156 | 2.175010e-50 | 1.267468e-47 |
| MsG0380016970.01 | MsG0880043994.01 | 0.809188 | 2.140339e-50 | 1.248356e-47 |
| MsG0380016994.01 | MsG0880043994.01 | 0.813324 | 2.710922e-51 | 1.764896e-48 |
| MsG0380017159.01 | MsG0880043994.01 | 0.806219 | 9.147797e-50 | 4.937731e-47 |
| MsG0480018313.01 | MsG0880043994.01 | 0.804516 | 2.080844e-49 | 1.074999e-46 |
| MsG0580026593.01 | MsG0880043994.01 | 0.824370 | 8.376188e-54 | 7.404460e-51 |
| MsG0580027431.01 | MsG0880043994.01 | 0.803718 | 3.049794e-49 | 1.543621e-46 |
| MsG0580028060.01 | MsG0880043994.01 | 0.806545 | 7.807789e-50 | 4.249572e-47 |
| MsG0580029640.01 | MsG0880043994.01 | 0.823274 | 1.512814e-53 | 1.296554e-50 |
| MsG0680030447.01 | MsG0880043994.01 | 0.850993 | 1.184887e-60 | 2.363806e-57 |
| MsG0280008614.01 | MsG0880043994.01 | 0.820347 | 7.197315e-53 | 5.680507e-50 |
| MsG0280008615.01 | MsG0880043994.01 | 0.818160 | 2.266109e-52 | 1.683278e-49 |
| MsG0280008909.01 | MsG0880043994.01 | 0.849221 | 3.717515e-60 | 6.999311e-57 |
| MsG0280009514.01 | MsG0880043994.01 | 0.846473 | 2.125072e-59 | 3.662272e-56 |
| MsG0280009515.01 | MsG0880043994.01 | 0.813396 | 2.614941e-51 | 1.705765e-48 |
| MsG0280010491.01 | MsG0880043994.01 | 0.822495 | 2.298115e-53 | 1.926632e-50 |
| MsG0780036477.01 | MsG0880043994.01 | 0.805033 | 1.622716e-49 | 8.496030e-47 |
| MsG0780036752.01 | MsG0880043994.01 | 0.815711 | 8.035154e-52 | 5.581739e-49 |
| MsG0780038386.01 | MsG0880043994.01 | 0.802989 | 4.318682e-49 | 2.145284e-46 |
| MsG0780038602.01 | MsG0880043994.01 | 0.811197 | 7.897970e-51 | 4.857826e-48 |
| MsG0780038603.01 | MsG0880043994.01 | 0.840583 | 7.966891e-58 | 1.139912e-54 |
| MsG0780038937.01 | MsG0880043994.01 | 0.815644 | 8.316424e-52 | 5.766598e-49 |
| MsG0780039252.01 | MsG0880043994.01 | 0.813233 | 2.839928e-51 | 1.844113e-48 |
| MsG0780039443.01 | MsG0880043994.01 | 0.813305 | 2.737742e-51 | 1.781384e-48 |
| MsG0780039655.01 | MsG0880043994.01 | 0.814483 | 1.505841e-51 | 1.011665e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043994.01.T01 | MTR_8g045695 | 91.667 | 96 | 8 | 0 | 23 | 118 | 61 | 156 | 2.46e-60 | 182 |
| MsG0880043994.01.T01 | MTR_8g045735 | 92.553 | 94 | 7 | 0 | 23 | 116 | 61 | 154 | 5.34e-60 | 181 |
| MsG0880043994.01.T01 | MTR_8g045665 | 85.417 | 96 | 14 | 0 | 23 | 118 | 61 | 156 | 7.67e-56 | 171 |
| MsG0880043994.01.T01 | MTR_8g045560 | 83.505 | 97 | 16 | 0 | 22 | 118 | 60 | 156 | 5.30e-54 | 166 |
| MsG0880043994.01.T01 | MTR_8g045640 | 83.505 | 97 | 16 | 0 | 22 | 118 | 60 | 156 | 6.75e-54 | 166 |
| MsG0880043994.01.T01 | MTR_8g045520 | 71.134 | 97 | 27 | 1 | 23 | 118 | 61 | 157 | 8.14e-45 | 143 |
| MsG0880043994.01.T01 | MTR_8g045570 | 72.826 | 92 | 24 | 1 | 23 | 113 | 61 | 152 | 4.84e-44 | 141 |
| MsG0880043994.01.T01 | MTR_8g045555 | 69.565 | 92 | 27 | 1 | 23 | 113 | 61 | 152 | 5.48e-43 | 138 |
| MsG0880043994.01.T01 | MTR_8g045400 | 67.010 | 97 | 30 | 2 | 23 | 118 | 61 | 156 | 5.26e-42 | 135 |
| MsG0880043994.01.T01 | MTR_8g045490 | 68.041 | 97 | 29 | 2 | 23 | 118 | 61 | 156 | 1.08e-41 | 135 |
| MsG0880043994.01.T01 | MTR_8g045300 | 65.625 | 96 | 32 | 1 | 23 | 117 | 61 | 156 | 2.37e-41 | 134 |
| MsG0880043994.01.T01 | MTR_1g030810 | 41.758 | 91 | 50 | 2 | 25 | 112 | 62 | 152 | 4.05e-19 | 77.8 |
| MsG0880043994.01.T01 | MTR_1g030820 | 38.462 | 91 | 53 | 2 | 25 | 112 | 62 | 152 | 1.64e-17 | 73.6 |
| MsG0880043994.01.T01 | MTR_8g012550 | 37.363 | 91 | 55 | 2 | 26 | 115 | 66 | 155 | 5.47e-17 | 72.4 |
| MsG0880043994.01.T01 | MTR_1g031640 | 44.444 | 90 | 43 | 4 | 25 | 113 | 64 | 147 | 1.36e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043994.01.T01 | AT1G70870 | 45.263 | 95 | 49 | 3 | 20 | 112 | 45 | 138 | 1.23e-18 | 76.3 |
| MsG0880043994.01.T01 | AT5G28010 | 35.106 | 94 | 59 | 2 | 23 | 114 | 73 | 166 | 4.11e-14 | 65.1 |
| MsG0880043994.01.T01 | AT5G28010 | 35.106 | 94 | 59 | 2 | 23 | 114 | 73 | 166 | 4.11e-14 | 65.1 |
| MsG0880043994.01.T01 | AT1G70850 | 37.234 | 94 | 57 | 2 | 23 | 114 | 223 | 316 | 1.66e-13 | 65.5 |
| MsG0880043994.01.T01 | AT1G70850 | 37.234 | 94 | 57 | 2 | 23 | 114 | 223 | 316 | 1.66e-13 | 65.5 |
| MsG0880043994.01.T01 | AT1G24020 | 38.372 | 86 | 51 | 2 | 28 | 112 | 67 | 151 | 2.73e-13 | 62.8 |
| MsG0880043994.01.T01 | AT1G24020 | 38.372 | 86 | 51 | 2 | 28 | 112 | 67 | 151 | 2.73e-13 | 62.8 |
| MsG0880043994.01.T01 | AT5G28000 | 35.714 | 98 | 60 | 3 | 20 | 114 | 67 | 164 | 7.40e-13 | 61.6 |
| MsG0880043994.01.T01 | AT1G70840 | 34.043 | 94 | 60 | 2 | 23 | 114 | 78 | 171 | 1.03e-12 | 61.6 |
| MsG0880043994.01.T01 | AT1G23120 | 35.106 | 94 | 58 | 3 | 19 | 111 | 54 | 145 | 1.05e-12 | 60.8 |
| MsG0880043994.01.T01 | AT1G70830 | 35.106 | 94 | 59 | 2 | 23 | 114 | 80 | 173 | 1.67e-12 | 60.8 |
| MsG0880043994.01.T01 | AT1G70830 | 34.737 | 95 | 60 | 2 | 23 | 115 | 80 | 174 | 1.81e-12 | 61.2 |
| MsG0880043994.01.T01 | AT1G23120 | 35.484 | 93 | 57 | 3 | 20 | 111 | 105 | 195 | 1.91e-12 | 61.2 |
| MsG0880043994.01.T01 | AT1G70890 | 35.106 | 94 | 59 | 2 | 23 | 114 | 65 | 158 | 2.77e-12 | 60.1 |
| MsG0880043994.01.T01 | AT4G23670 | 35.556 | 90 | 56 | 2 | 25 | 113 | 63 | 151 | 5.09e-11 | 56.6 |
Find 30 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATAACTTTCAAGTTGTT+TGG | 0.327904 | 8:-34031094 | MsG0880043994.01.T01:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8:-34031012 | MsG0880043994.01.T01:CDS |
| AATTCAAGTTCGAGTTCAAC+TGG | 0.415188 | 8:-34032077 | MsG0880043994.01.T01:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8:-34031071 | MsG0880043994.01.T01:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8:+34030950 | None:intergenic |
| CATGAGTTGCTTGGTATAGC+AGG | 0.455659 | 8:+34032105 | None:intergenic |
| AATTCCCCACATGAGTTGCT+TGG | 0.459855 | 8:+34032096 | None:intergenic |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8:-34030923 | MsG0880043994.01.T01:CDS |
| ATAACTTTCAAGTTGTTTGG+TGG | 0.479625 | 8:-34031091 | MsG0880043994.01.T01:CDS |
| CGAGTTCAACTGGATGGTTG+AGG | 0.483822 | 8:-34032067 | MsG0880043994.01.T01:CDS |
| GAGTTCAACTGGATGGTTGA+GGG | 0.500056 | 8:-34032066 | MsG0880043994.01.T01:intron |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8:-34030900 | MsG0880043994.01.T01:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8:-34030907 | MsG0880043994.01.T01:CDS |
| CAAGTTCGAGTTCAACTGGA+TGG | 0.509876 | 8:-34032073 | MsG0880043994.01.T01:CDS |
| GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8:-34030965 | MsG0880043994.01.T01:CDS |
| TAACATAACAACAGATGGTA+AGG | 0.518649 | 8:-34031164 | MsG0880043994.01.T01:intron |
| CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8:-34030957 | MsG0880043994.01.T01:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8:-34030908 | MsG0880043994.01.T01:CDS |
| GAAGTGCTTAACAAGGCTGA+TGG | 0.580204 | 8:-34031031 | MsG0880043994.01.T01:CDS |
| CTATACCAAGCAACTCATGT+GGG | 0.591208 | 8:-34032101 | MsG0880043994.01.T01:CDS |
| ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8:-34030961 | MsG0880043994.01.T01:CDS |
| AGGTACACACATGCAATGAG+AGG | 0.626711 | 8:-34031144 | MsG0880043994.01.T01:CDS |
| TTGCTTGGTATAGCAGGTGT+GGG | 0.632870 | 8:+34032111 | None:intergenic |
| GCTATACCAAGCAACTCATG+TGG | 0.632973 | 8:-34032102 | MsG0880043994.01.T01:CDS |
| CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8:-34031038 | MsG0880043994.01.T01:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8:-34030906 | MsG0880043994.01.T01:CDS |
| GTTGCTTGGTATAGCAGGTG+TGG | 0.657481 | 8:+34032110 | None:intergenic |
| TATACCAAGCAACTCATGTG+GGG | 0.680077 | 8:-34032100 | MsG0880043994.01.T01:CDS |
| TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8:-34030984 | MsG0880043994.01.T01:CDS |
| GGTACACACATGCAATGAGA+GGG | 0.691358 | 8:-34031143 | MsG0880043994.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGTTTTTTATTGTTTT+TGG | - | Chr8:34031806-34031825 | MsG0880043994.01.T01:intron | 10.0% |
| !!! | TAAATTTTCACTTTTTGTTT+TGG | + | Chr8:34031334-34031353 | None:intergenic | 15.0% |
| !!! | TAAGATAAAGTTTTTACTTT+TGG | - | Chr8:34031721-34031740 | MsG0880043994.01.T01:intron | 15.0% |
| !!! | TATTAAAGTCAAACTTTTAT+CGG | - | Chr8:34031459-34031478 | MsG0880043994.01.T01:intron | 15.0% |
| !! | AATCAAATCAAATTGTGTAA+TGG | + | Chr8:34031278-34031297 | None:intergenic | 20.0% |
| !! | ATCAAAAATCAAATATCACA+AGG | + | Chr8:34031430-34031449 | None:intergenic | 20.0% |
| !! | ATCATAAAAACCTAATGATA+AGG | + | Chr8:34031557-34031576 | None:intergenic | 20.0% |
| !!! | ATTATTGTATTTTCTCTCTT+TGG | + | Chr8:34031245-34031264 | None:intergenic | 20.0% |
| !!! | TGGTGAAACTAATATTTTTA+AGG | - | Chr8:34031582-34031601 | MsG0880043994.01.T01:intron | 20.0% |
| !!! | TTAGGTTTTTATGATTTCTT+TGG | - | Chr8:34031562-34031581 | MsG0880043994.01.T01:intron | 20.0% |
| !!! | TTATTGTATTTTCTCTCTTT+GGG | + | Chr8:34031244-34031263 | None:intergenic | 20.0% |
| ! | AATGCTAACAAATGTTCTTA+AGG | + | Chr8:34031761-34031780 | None:intergenic | 25.0% |
| ! | ACAATATCTCTTGGAATTTA+CGG | + | Chr8:34031382-34031401 | None:intergenic | 25.0% |
| ! | ATAAAATTGCAGAATGATAG+AGG | - | Chr8:34031108-34031127 | MsG0880043994.01.T01:CDS | 25.0% |
| ! | ATAGAGGGAAATTATTGTTA+AGG | - | Chr8:34031124-34031143 | MsG0880043994.01.T01:CDS | 25.0% |
| ! | TAAAATTGCAGAATGATAGA+GGG | - | Chr8:34031109-34031128 | MsG0880043994.01.T01:CDS | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | - | Chr8:34031935-34031954 | MsG0880043994.01.T01:intron | 25.0% |
| !!! | AAGATAACTTTCAAGTTGTT+TGG | - | Chr8:34031912-34031931 | MsG0880043994.01.T01:intron | 25.0% |
| !!! | AATTTTTCGATCTAGTGTAA+TGG | - | Chr8:34030978-34030997 | MsG0880043994.01.T01:CDS | 25.0% |
| !!! | ATTTTACTAATGAAGAGTAC+AGG | - | Chr8:34031205-34031224 | MsG0880043994.01.T01:intron | 25.0% |
| !!! | ATTTTCACTTTTTGTTTTGG+TGG | + | Chr8:34031331-34031350 | None:intergenic | 25.0% |
| !!! | CTGTTTAGGTTATTTTGATT+AGG | + | Chr8:34031305-34031324 | None:intergenic | 25.0% |
| !!! | GTAATGGATAAGTAATTACA+TGG | - | Chr8:34030994-34031013 | MsG0880043994.01.T01:CDS | 25.0% |
| !!! | TATTTGATTTTTGATCCTTG+TGG | - | Chr8:34031435-34031454 | MsG0880043994.01.T01:intron | 25.0% |
| CTTAGGGTTAATAAAACGTA+TGG | - | Chr8:34031162-34031181 | MsG0880043994.01.T01:intron | 30.0% | |
| GCTACAAAGTTAATCTCTTA+GGG | - | Chr8:34031146-34031165 | MsG0880043994.01.T01:CDS | 30.0% | |
| TAACATAACAACAGATGGTA+AGG | - | Chr8:34031842-34031861 | MsG0880043994.01.T01:intron | 30.0% | |
| TAATTACATGGCACATATCT+AGG | - | Chr8:34031006-34031025 | MsG0880043994.01.T01:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | - | Chr8:34032022-34032041 | MsG0880043994.01.T01:intron | 30.0% | |
| ! | GTTTGACTTTAATAACCACA+AGG | + | Chr8:34031453-34031472 | None:intergenic | 30.0% |
| ! | TGATTTTAAACTATCCTGTG+AGG | - | Chr8:34031058-34031077 | MsG0880043994.01.T01:CDS | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | - | Chr8:34032083-34032102 | MsG0880043994.01.T01:CDS | 30.0% |
| !! | ATAACTTTCAAGTTGTTTGG+TGG | - | Chr8:34031915-34031934 | MsG0880043994.01.T01:intron | 30.0% |
| AATCCTTAACTAGTGCTCTA+AGG | + | Chr8:34031624-34031643 | None:intergenic | 35.0% | |
| ACCATCTGTTGTTATGTTAG+AGG | + | Chr8:34031841-34031860 | None:intergenic | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | - | Chr8:34032045-34032064 | MsG0880043994.01.T01:intron | 35.0% | |
| ATCCTTAACTAGTGCTCTAA+GGG | + | Chr8:34031623-34031642 | None:intergenic | 35.0% | |
| CCAAGAGATATTGTGCTTTA+TGG | - | Chr8:34031388-34031407 | MsG0880043994.01.T01:intron | 35.0% | |
| CCATAAAGCACAATATCTCT+TGG | + | Chr8:34031391-34031410 | None:intergenic | 35.0% | |
| GATTAACTTTGTAACCTCAC+AGG | + | Chr8:34031075-34031094 | None:intergenic | 35.0% | |
| GGCTACAAAGTTAATCTCTT+AGG | - | Chr8:34031145-34031164 | MsG0880043994.01.T01:CDS | 35.0% | |
| TGGCACATATCTAGGTAAAA+CGG | - | Chr8:34031014-34031033 | MsG0880043994.01.T01:CDS | 35.0% | |
| ! | AATTCAAGTTCGAGTTCAAC+TGG | - | Chr8:34030929-34030948 | MsG0880043994.01.T01:CDS | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | - | Chr8:34032098-34032117 | MsG0880043994.01.T01:CDS | 35.0% |
| ! | GCATCGATATCCTTATCATT+AGG | - | Chr8:34031544-34031563 | MsG0880043994.01.T01:intron | 35.0% |
| ! | GTTTGCTACGATAGCAAAAA+GGG | + | Chr8:34031360-34031379 | None:intergenic | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | + | Chr8:34032079-34032098 | None:intergenic | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | - | Chr8:34032099-34032118 | MsG0880043994.01.T01:CDS | 35.0% |
| !! | CATCTTAGAAGTGCTTAACA+AGG | - | Chr8:34031968-34031987 | MsG0880043994.01.T01:intron | 35.0% |
| AGGAAATCCATCCATCCATT+TGG | + | Chr8:34032059-34032078 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | - | Chr8:34031994-34032013 | MsG0880043994.01.T01:intron | 40.0% | |
| CTATACCAAGCAACTCATGT+GGG | - | Chr8:34030905-34030924 | MsG0880043994.01.T01:CDS | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | - | Chr8:34032041-34032060 | MsG0880043994.01.T01:intron | 40.0% | |
| GCCTCTAACATAACAACAGA+TGG | - | Chr8:34031837-34031856 | MsG0880043994.01.T01:intron | 40.0% | |
| TATACCAAGCAACTCATGTG+GGG | - | Chr8:34030906-34030925 | MsG0880043994.01.T01:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | - | Chr8:34032106-34032125 | MsG0880043994.01.T01:CDS | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | - | Chr8:34032100-34032119 | MsG0880043994.01.T01:CDS | 40.0% | |
| ! | TTCCCTTAGAGCACTAGTTA+AGG | - | Chr8:34031618-34031637 | MsG0880043994.01.T01:intron | 40.0% |
| !! | GGTTTGCTACGATAGCAAAA+AGG | + | Chr8:34031361-34031380 | None:intergenic | 40.0% |
| !!! | TGTTTTGGTGGCAACTGTTT+AGG | + | Chr8:34031319-34031338 | None:intergenic | 40.0% |
| AATTCCCCACATGAGTTGCT+TGG | + | Chr8:34030913-34030932 | None:intergenic | 45.0% | |
| AGGTACACACATGCAATGAG+AGG | - | Chr8:34031862-34031881 | MsG0880043994.01.T01:intron | 45.0% | |
| CATGAGTTGCTTGGTATAGC+AGG | + | Chr8:34030904-34030923 | None:intergenic | 45.0% | |
| CGATACTCCAAATGGATGGA+TGG | - | Chr8:34032049-34032068 | MsG0880043994.01.T01:intron | 45.0% | |
| GAGTTCAACTGGATGGTTGA+GGG | - | Chr8:34030940-34030959 | MsG0880043994.01.T01:CDS | 45.0% | |
| GCTATACCAAGCAACTCATG+TGG | - | Chr8:34030904-34030923 | MsG0880043994.01.T01:CDS | 45.0% | |
| GGTACACACATGCAATGAGA+GGG | - | Chr8:34031863-34031882 | MsG0880043994.01.T01:intron | 45.0% | |
| TTGCTTGGTATAGCAGGTGT+GGG | + | Chr8:34030898-34030917 | None:intergenic | 45.0% | |
| ! | CAAGTTCGAGTTCAACTGGA+TGG | - | Chr8:34030933-34030952 | MsG0880043994.01.T01:CDS | 45.0% |
| ! | GAAGTGCTTAACAAGGCTGA+TGG | - | Chr8:34031975-34031994 | MsG0880043994.01.T01:intron | 45.0% |
| !! | GTTGAGGGTTAGTCTTGACT+TGG | - | Chr8:34030955-34030974 | MsG0880043994.01.T01:CDS | 45.0% |
| !! | TTAAAGTAATATTAAAAATA+AGG | + | Chr8:34031785-34031804 | None:intergenic | 5.0% |
| CGAGTTCAACTGGATGGTTG+AGG | - | Chr8:34030939-34030958 | MsG0880043994.01.T01:CDS | 50.0% | |
| GTTGCTTGGTATAGCAGGTG+TGG | + | Chr8:34030899-34030918 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 34030889 | 34032139 | 34030889 | ID=MsG0880043994.01;Name=MsG0880043994.01 |
| Chr8 | mRNA | 34030889 | 34032139 | 34030889 | ID=MsG0880043994.01.T01;Parent=MsG0880043994.01;Name=MsG0880043994.01.T01;_AED=0.50;_eAED=0.62;_QI=0|0|0|1|1|1|2|0|118 |
| Chr8 | exon | 34032067 | 34032139 | 34032067 | ID=MsG0880043994.01.T01:exon:10336;Parent=MsG0880043994.01.T01 |
| Chr8 | exon | 34030889 | 34031172 | 34030889 | ID=MsG0880043994.01.T01:exon:10335;Parent=MsG0880043994.01.T01 |
| Chr8 | CDS | 34032067 | 34032139 | 34032067 | ID=MsG0880043994.01.T01:cds;Parent=MsG0880043994.01.T01 |
| Chr8 | CDS | 34030889 | 34031172 | 34030889 | ID=MsG0880043994.01.T01:cds;Parent=MsG0880043994.01.T01 |
| Gene Sequence |
| Protein sequence |
