AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016131.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016131.01.T01 MTR_4g106510 96.914 162 5 0 33 194 313 474 5.00e-112 329
MsG0380016131.01.T01 MTR_3g078550 79.394 165 34 0 30 194 280 444 4.01e-97 290
MsG0380016131.01.T01 MTR_3g078550 79.394 165 34 0 30 194 310 474 9.44e-97 290
MsG0380016131.01.T01 MTR_3g078490 80.247 162 32 0 33 194 343 504 1.28e-93 283
MsG0380016131.01.T01 MTR_8g083520 39.877 163 96 1 30 192 198 358 8.81e-40 139
MsG0380016131.01.T01 MTR_6g086300 39.877 163 96 1 30 192 319 479 1.14e-39 141
MsG0380016131.01.T01 MTR_6g086300 39.877 163 96 1 30 192 319 479 1.14e-39 141
MsG0380016131.01.T01 MTR_6g086340 39.264 163 97 1 30 192 317 477 4.70e-39 140
MsG0380016131.01.T01 MTR_8g083520 39.877 163 96 1 30 192 278 438 5.01e-39 139
MsG0380016131.01.T01 MTR_8g083530 41.333 150 86 1 43 192 333 480 8.95e-38 136
MsG0380016131.01.T01 MTR_8g064170 40.789 152 88 1 43 194 339 488 1.72e-34 127
MsG0380016131.01.T01 MTR_3g078170 41.447 152 87 1 43 194 372 521 1.82e-34 128
MsG0380016131.01.T01 MTR_8g064170 40.789 152 88 1 43 194 371 520 2.65e-34 127
MsG0380016131.01.T01 MTR_2g067660 39.752 161 95 1 30 190 341 499 1.82e-33 125
MsG0380016131.01.T01 MTR_4g107040 38.816 152 91 1 43 194 374 523 5.49e-32 121
MsG0380016131.01.T01 MTR_2g034160 33.728 169 98 4 30 189 348 511 1.51e-22 94.7
MsG0380016131.01.T01 MTR_1399s0020 34.356 163 97 3 30 189 166 321 5.83e-22 91.7
MsG0380016131.01.T01 MTR_2g042330 33.516 182 106 6 21 193 305 480 8.26e-19 84.0
MsG0380016131.01.T01 MTR_2g009750 32.857 140 93 1 34 172 311 450 1.86e-16 77.0
MsG0380016131.01.T01 MTR_2g009750 32.857 140 93 1 34 172 310 449 1.89e-16 77.0
MsG0380016131.01.T01 MTR_4g093170 30.137 146 98 2 30 172 334 478 2.98e-16 76.6
MsG0380016131.01.T01 MTR_2g009750 32.394 142 92 2 34 172 311 451 3.00e-16 76.6
MsG0380016131.01.T01 MTR_4g131180 32.192 146 93 2 46 190 329 469 1.74e-15 74.3
MsG0380016131.01.T01 MTR_1g014320 31.214 173 106 5 25 190 303 469 3.84e-15 73.2
MsG0380016131.01.T01 MTR_3g078170 40.476 84 48 1 43 126 372 453 1.43e-14 71.6
MsG0380016131.01.T01 MTR_4g131180 33.333 123 77 1 46 168 329 446 3.60e-14 70.5
MsG0380016131.01.T01 MTR_8g076480 27.647 170 114 4 30 194 262 427 9.69e-14 69.3
MsG0380016131.01.T01 MTR_8g018790 83.784 37 6 0 1 37 491 527 7.56e-12 63.9
MsG0380016131.01.T01 MTR_8g018790 83.784 37 6 0 1 37 624 660 8.17e-12 63.9
MsG0380016131.01.T01 MTR_3g088150 29.054 148 99 3 49 194 293 436 8.30e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016131.01.T01 AT1G74920 82.716 162 28 0 33 194 308 469 3.07e-99 296
MsG0380016131.01.T01 AT1G74920 82.716 162 28 0 33 194 313 474 3.10e-99 296
MsG0380016131.01.T01 AT3G48170 79.012 162 34 0 33 194 313 474 3.44e-95 286
MsG0380016131.01.T01 AT3G24503 43.750 160 88 1 33 192 321 478 1.85e-40 144
MsG0380016131.01.T01 AT1G23800 37.908 153 93 1 42 194 363 513 6.93e-33 123
MsG0380016131.01.T01 AT3G48000 39.474 152 90 1 43 194 368 517 7.36e-33 123
MsG0380016131.01.T01 AT1G79440 41.830 153 87 1 38 190 355 505 1.38e-32 122
MsG0380016131.01.T01 AT3G66658 32.065 184 108 5 21 192 336 514 2.75e-23 97.1
MsG0380016131.01.T01 AT3G66658 32.065 184 108 5 21 192 336 514 2.81e-23 97.1
MsG0380016131.01.T01 AT1G54100 34.756 164 101 4 33 193 319 479 1.95e-17 80.1
MsG0380016131.01.T01 AT1G54100 34.756 164 101 4 33 193 319 479 1.95e-17 80.1
MsG0380016131.01.T01 AT2G14170 32.168 143 93 2 33 172 300 441 1.02e-16 77.8
MsG0380016131.01.T01 AT2G14170 32.168 143 93 2 33 172 409 550 1.03e-16 78.2
MsG0380016131.01.T01 AT2G14170 32.168 143 93 2 33 172 409 550 1.22e-16 77.8
MsG0380016131.01.T01 AT2G24270 31.293 147 93 3 46 190 369 509 1.41e-12 65.9
MsG0380016131.01.T01 AT2G24270 30.822 146 95 2 46 190 329 469 1.60e-12 65.9
MsG0380016131.01.T01 AT2G24270 30.822 146 95 2 46 190 329 469 1.60e-12 65.9
MsG0380016131.01.T01 AT2G24270 30.822 146 95 2 46 190 329 469 1.62e-12 65.9
MsG0380016131.01.T01 AT4G36250 29.560 159 105 4 38 194 276 429 1.86e-12 65.5

Find 41 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGATGCAGGCATTTA+AGG 0.134214 3:+79461237 MsG0380016131.01.T01:intron
ATTTGGAAAGAAGAAGTATT+TGG 0.232708 3:+79460915 MsG0380016131.01.T01:CDS
TGACTACTTCCATGCAAATT+TGG 0.235483 3:+79460898 MsG0380016131.01.T01:CDS
GGCACTAAACGTAGTGGTTT+TGG 0.274232 3:+79461316 MsG0380016131.01.T01:CDS
CATTTAAGGCCGGAATAGTA+TGG 0.290640 3:+79461251 MsG0380016131.01.T01:CDS
GGAATCTGGAATGGCGTAAA+TGG 0.293622 3:-79459660 None:intergenic
TTCAATTCATGCACGGAATC+TGG 0.312219 3:-79459674 None:intergenic
ATCCCTTGGAAGAAGGTTGC+AGG 0.381818 3:+79460226 MsG0380016131.01.T01:CDS
GCAATTGACCCATACTATTC+CGG 0.433561 3:-79461260 None:intergenic
ATGCTTCACTCAAGCGCCAT+GGG 0.461661 3:+79461291 MsG0380016131.01.T01:CDS
CATCAAAATTGCAGATCCCT+TGG 0.463562 3:+79460212 MsG0380016131.01.T01:CDS
GTCCTCTACAGCTATGGCTT+AGG 0.463601 3:+79461093 MsG0380016131.01.T01:intron
TTGGAAGAAGGTTGCAGGCT+AGG 0.466614 3:+79460231 MsG0380016131.01.T01:CDS
ACCTGTTGTTAGTGAAGGGC+AGG 0.473564 3:+79460254 MsG0380016131.01.T01:CDS
ACCTGCCCTTCACTAACAAC+AGG 0.480135 3:-79460255 None:intergenic
GTCACATCAGTTATGATGGT+TGG 0.495328 3:-79460879 None:intergenic
ATTGCAGATCCCTTGGAAGA+AGG 0.495747 3:+79460219 MsG0380016131.01.T01:CDS
TTCTTCTTTCCAAATTTGCA+TGG 0.496084 3:-79460907 None:intergenic
CAATGGCAGCATCTAAAGAA+AGG 0.502314 3:+79460843 MsG0380016131.01.T01:intron
AAGATGTGAGCGTGTAACTA+AGG 0.508552 3:+79461143 MsG0380016131.01.T01:CDS
CATGCTTCACTCAAGCGCCA+TGG 0.516509 3:+79461290 MsG0380016131.01.T01:CDS
CATACCATGCTCCTAGTTCA+CGG 0.516542 3:-79461339 None:intergenic
AGTAGTCACATCAGTTATGA+TGG 0.526637 3:-79460883 None:intergenic
TAGCCTGCAACCTTCTTCCA+AGG 0.540093 3:-79460229 None:intergenic
CTAGGACCTGTTGTTAGTGA+AGG 0.541728 3:+79460249 MsG0380016131.01.T01:CDS
GACTGGTGGGTCTCGACCAG+AGG 0.561492 3:+79460740 MsG0380016131.01.T01:CDS
TTCACTCAAGCGCCATGGGG+AGG 0.565972 3:+79461295 MsG0380016131.01.T01:CDS
CTGATGCAGGCATTTAAGGC+CGG 0.567654 3:+79461241 MsG0380016131.01.T01:intron
GTCTCGAACGCTAAGAGTGA+GGG 0.574738 3:+79460705 MsG0380016131.01.T01:CDS
TTCATGCACGGAATCTGGAA+TGG 0.586797 3:-79459669 None:intergenic
TAGGACCTGTTGTTAGTGAA+GGG 0.592104 3:+79460250 MsG0380016131.01.T01:CDS
TAGATCAATAGCTTCTTCCT+CGG 0.596377 3:-79460967 None:intergenic
AGCCTGCAACCTTCTTCCAA+GGG 0.599460 3:-79460228 None:intergenic
ATTTAAGGCCGGAATAGTAT+GGG 0.604605 3:+79461252 MsG0380016131.01.T01:CDS
TGTCTCGAACGCTAAGAGTG+AGG 0.614021 3:+79460704 MsG0380016131.01.T01:CDS
ATATTGCTTCAATTCATGCA+CGG 0.618950 3:-79459681 None:intergenic
CTACGTTTAGTGCCTCCCCA+TGG 0.627337 3:-79461307 None:intergenic
CATGGCGCTTGAGTGAAGCA+TGG 0.643282 3:-79461289 None:intergenic
TTGGCCGTGAACTAGGAGCA+TGG 0.648118 3:+79461335 MsG0380016131.01.T01:CDS
TGCTTCACTCAAGCGCCATG+GGG 0.659834 3:+79461292 MsG0380016131.01.T01:CDS
TGGGGAGGCACTAAACGTAG+TGG 0.684647 3:+79461310 MsG0380016131.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATATTCACTCAAA+GGG - Chr3:79459788-79459807 None:intergenic 20.0%
!! AAATAATTCAACATAATGGT+TGG + Chr3:79459757-79459776 MsG0380016131.01.T01:intron 20.0%
!! CAAAACATAATCAATTATCA+TGG - Chr3:79460817-79460836 None:intergenic 20.0%
!! CAAGAAAACAACTAAATAAT+TGG + Chr3:79461186-79461205 MsG0380016131.01.T01:intron 20.0%
!! CATATTCAATGAAAATGTAT+TGG + Chr3:79460388-79460407 MsG0380016131.01.T01:intron 20.0%
!! TAAGATACTCTTATTATTTC+AGG + Chr3:79460140-79460159 MsG0380016131.01.T01:intron 20.0%
!! TATTCTGTATTCACATTATA+TGG + Chr3:79460656-79460675 MsG0380016131.01.T01:intron 20.0%
!! TGTATGTATAATTTATGAGA+AGG + Chr3:79460506-79460525 MsG0380016131.01.T01:intron 20.0%
!!! AACATAATTTTTGAATAGGA+TGG + Chr3:79460173-79460192 MsG0380016131.01.T01:intron 20.0%
!!! TAGCAACATAATTTTTGAAT+AGG + Chr3:79460169-79460188 MsG0380016131.01.T01:intron 20.0%
! ACTTACATGTACAATAAGAT+GGG - Chr3:79459926-79459945 None:intergenic 25.0%
! AGAAAGAAAACTACATTATG+TGG - Chr3:79460565-79460584 None:intergenic 25.0%
! ATAATTTATGAGAAGGAAGA+AGG + Chr3:79460513-79460532 MsG0380016131.01.T01:intron 25.0%
! CAAAGTAAATATTCACTCAA+AGG - Chr3:79459789-79459808 None:intergenic 25.0%
! GCTCAAATAATTCAACATAA+TGG + Chr3:79459753-79459772 MsG0380016131.01.T01:intron 25.0%
! GGTATCTAAGTTATATACTT+TGG + Chr3:79461071-79461090 MsG0380016131.01.T01:intron 25.0%
! TACTTACATGTACAATAAGA+TGG - Chr3:79459927-79459946 None:intergenic 25.0%
! TGATTCTAAACATATTTGTC+TGG + Chr3:79460610-79460629 MsG0380016131.01.T01:intron 25.0%
! TTCTGAACTTTGTAAAGTAA+AGG + Chr3:79460331-79460350 MsG0380016131.01.T01:intron 25.0%
!! ACATAATGTAGTTTTCTTTC+TGG + Chr3:79460564-79460583 MsG0380016131.01.T01:intron 25.0%
!! ATTATGTTTTGCAAATGCAA+TGG + Chr3:79460826-79460845 MsG0380016131.01.T01:intron 25.0%
!!! ATGGTTCTACATTTTGAATA+TGG + Chr3:79459880-79459899 MsG0380016131.01.T01:intron 25.0%
!!! ATTTGGAAAGAAGAAGTATT+TGG + Chr3:79460915-79460934 MsG0380016131.01.T01:CDS 25.0%
ATATTGCTTCAATTCATGCA+CGG - Chr3:79459684-79459703 None:intergenic 30.0%
GAACTTTGTAAAGTAAAGGA+CGG + Chr3:79460335-79460354 MsG0380016131.01.T01:intron 30.0%
GACAAAAGAAAAAACGCAAA+TGG - Chr3:79460016-79460035 None:intergenic 30.0%
TAGAACTTTGTCAGACAAAT+TGG + Chr3:79460074-79460093 MsG0380016131.01.T01:intron 30.0%
TTCTTCTTTCCAAATTTGCA+TGG - Chr3:79460910-79460929 None:intergenic 30.0%
! TTCATCTGTATACTCTTTTC+CGG + Chr3:79461035-79461054 MsG0380016131.01.T01:intron 30.0%
! TTTCTTTTGTCTGCGTATAT+GGG + Chr3:79460025-79460044 MsG0380016131.01.T01:intron 30.0%
! TTTTCTTTTGTCTGCGTATA+TGG + Chr3:79460024-79460043 MsG0380016131.01.T01:intron 30.0%
! TTTTGAATAGGATGGTGAAA+TGG + Chr3:79460181-79460200 MsG0380016131.01.T01:intron 30.0%
ACTAAGGTGAGACTGATTAT+AGG + Chr3:79461159-79461178 MsG0380016131.01.T01:intron 35.0%
AGTAGTCACATCAGTTATGA+TGG - Chr3:79460886-79460905 None:intergenic 35.0%
TAGATCAATAGCTTCTTCCT+CGG - Chr3:79460970-79460989 None:intergenic 35.0%
TCATGTATTCAGCAGAGTAA+GGG + Chr3:79459717-79459736 MsG0380016131.01.T01:intron 35.0%
TGACTACTTCCATGCAAATT+TGG + Chr3:79460898-79460917 MsG0380016131.01.T01:CDS 35.0%
TGAGCTAGCACAAAAGTTTA+CGG - Chr3:79459972-79459991 None:intergenic 35.0%
! AACGTTTTTACACACAGAAC+AGG - Chr3:79460942-79460961 None:intergenic 35.0%
! ATGTCAATTTGCTTGTACCA+TGG + Chr3:79460434-79460453 MsG0380016131.01.T01:intron 35.0%
! ATTTAAGGCCGGAATAGTAT+GGG + Chr3:79461252-79461271 MsG0380016131.01.T01:CDS 35.0%
! TGTCAGACAAATTGGTAGTT+GGG + Chr3:79460082-79460101 MsG0380016131.01.T01:intron 35.0%
! TTGTCAGACAAATTGGTAGT+TGG + Chr3:79460081-79460100 MsG0380016131.01.T01:intron 35.0%
!! ATGTAGTTTTCTTTCTGGTC+AGG + Chr3:79460569-79460588 MsG0380016131.01.T01:intron 35.0%
!! ATTGGTAGTTGGGATTTTGT+CGG + Chr3:79460092-79460111 MsG0380016131.01.T01:intron 35.0%
AAGATGTGAGCGTGTAACTA+AGG + Chr3:79461143-79461162 MsG0380016131.01.T01:CDS 40.0%
ACAAAAGTTTACGGAAGGAG+TGG - Chr3:79459963-79459982 None:intergenic 40.0%
AGTTTATCTTGCTCTGATGC+AGG + Chr3:79461228-79461247 MsG0380016131.01.T01:intron 40.0%
CAAAAGTTTACGGAAGGAGT+GGG - Chr3:79459962-79459981 None:intergenic 40.0%
CAATGGCAGCATCTAAAGAA+AGG + Chr3:79460843-79460862 MsG0380016131.01.T01:intron 40.0%
CATCAAAATTGCAGATCCCT+TGG + Chr3:79460212-79460231 MsG0380016131.01.T01:CDS 40.0%
CTAGCACAAAAGTTTACGGA+AGG - Chr3:79459968-79459987 None:intergenic 40.0%
CTCATGTATTCAGCAGAGTA+AGG + Chr3:79459716-79459735 MsG0380016131.01.T01:intron 40.0%
GATACCATTCCACAAATGAC+CGG - Chr3:79461057-79461076 None:intergenic 40.0%
GCAATTGACCCATACTATTC+CGG - Chr3:79461263-79461282 None:intergenic 40.0%
GTCACATCAGTTATGATGGT+TGG - Chr3:79460882-79460901 None:intergenic 40.0%
GTCAGAGTTGCTTGAAACTA+TGG + Chr3:79459861-79459880 MsG0380016131.01.T01:intron 40.0%
TAGGACCTGTTGTTAGTGAA+GGG + Chr3:79460250-79460269 MsG0380016131.01.T01:CDS 40.0%
TGTAAAAACGTTTAGCACCG+AGG + Chr3:79460950-79460969 MsG0380016131.01.T01:CDS 40.0%
TTCAATTCATGCACGGAATC+TGG - Chr3:79459677-79459696 None:intergenic 40.0%
! AATTTGCTTGTACCATGGAC+TGG + Chr3:79460439-79460458 MsG0380016131.01.T01:intron 40.0%
! AGAAAGCATAACCATACCTC+TGG - Chr3:79460759-79460778 None:intergenic 40.0%
! CATTTAAGGCCGGAATAGTA+TGG + Chr3:79461251-79461270 MsG0380016131.01.T01:CDS 40.0%
! TACTCTTTTCCGGTCATTTG+TGG + Chr3:79461045-79461064 MsG0380016131.01.T01:intron 40.0%
! TTTTCCGGTCATTTGTGGAA+TGG + Chr3:79461050-79461069 MsG0380016131.01.T01:intron 40.0%
ACTTTGGTCCTCTACAGCTA+TGG + Chr3:79461087-79461106 MsG0380016131.01.T01:intron 45.0%
ATTGCAGATCCCTTGGAAGA+AGG + Chr3:79460219-79460238 MsG0380016131.01.T01:CDS 45.0%
CATACCATGCTCCTAGTTCA+CGG - Chr3:79461342-79461361 None:intergenic 45.0%
CTAGGACCTGTTGTTAGTGA+AGG + Chr3:79460249-79460268 MsG0380016131.01.T01:CDS 45.0%
CTGTGCAAGTGTGTTCAGTT+AGG + Chr3:79460777-79460796 MsG0380016131.01.T01:intron 45.0%
TGCTCTGATGCAGGCATTTA+AGG + Chr3:79461237-79461256 MsG0380016131.01.T01:intron 45.0%
TTCATGCACGGAATCTGGAA+TGG - Chr3:79459672-79459691 None:intergenic 45.0%
! GGAAGCTTTATACCAGTCCA+TGG - Chr3:79460454-79460473 None:intergenic 45.0%
! GGAATCTGGAATGGCGTAAA+TGG - Chr3:79459663-79459682 None:intergenic 45.0%
! GGCACTAAACGTAGTGGTTT+TGG + Chr3:79461316-79461335 MsG0380016131.01.T01:CDS 45.0%
!! AGCTTCCTGAGAAGCACTAT+TGG + Chr3:79460467-79460486 MsG0380016131.01.T01:intron 45.0%
!!! GTGCGACAATTTTGACTGGT+GGG + Chr3:79460727-79460746 MsG0380016131.01.T01:CDS 45.0%
ACCAGCCAATAGTGCTTCTC+AGG - Chr3:79460475-79460494 None:intergenic 50.0%
ACCTGCCCTTCACTAACAAC+AGG - Chr3:79460258-79460277 None:intergenic 50.0%
ACCTGTTGTTAGTGAAGGGC+AGG + Chr3:79460254-79460273 MsG0380016131.01.T01:CDS 50.0%
AGCCTGCAACCTTCTTCCAA+GGG - Chr3:79460231-79460250 None:intergenic 50.0%
ATCCCTTGGAAGAAGGTTGC+AGG + Chr3:79460226-79460245 MsG0380016131.01.T01:CDS 50.0%
ATGCTTCACTCAAGCGCCAT+GGG + Chr3:79461291-79461310 MsG0380016131.01.T01:CDS 50.0%
CACCTAAGCCATAGCTGTAG+AGG - Chr3:79461098-79461117 None:intergenic 50.0%
GTCCTCTACAGCTATGGCTT+AGG + Chr3:79461093-79461112 MsG0380016131.01.T01:intron 50.0%
GTCTCGAACGCTAAGAGTGA+GGG + Chr3:79460705-79460724 MsG0380016131.01.T01:CDS 50.0%
TAGCCTGCAACCTTCTTCCA+AGG - Chr3:79460232-79460251 None:intergenic 50.0%
TGTCTCGAACGCTAAGAGTG+AGG + Chr3:79460704-79460723 MsG0380016131.01.T01:CDS 50.0%
TTGGAAGAAGGTTGCAGGCT+AGG + Chr3:79460231-79460250 MsG0380016131.01.T01:CDS 50.0%
! CTGATGCAGGCATTTAAGGC+CGG + Chr3:79461241-79461260 MsG0380016131.01.T01:intron 50.0%
!! GAGAAGCACTATTGGCTGGT+TGG + Chr3:79460475-79460494 MsG0380016131.01.T01:intron 50.0%
!! GAGGGTGCGACAATTTTGAC+TGG + Chr3:79460723-79460742 MsG0380016131.01.T01:CDS 50.0%
!! TCCTGAGAAGCACTATTGGC+TGG + Chr3:79460471-79460490 MsG0380016131.01.T01:intron 50.0%
!!! AGTGGTTTTGGCCGTGAACT+AGG + Chr3:79461328-79461347 MsG0380016131.01.T01:CDS 50.0%
!!! GGTGCGACAATTTTGACTGG+TGG + Chr3:79460726-79460745 MsG0380016131.01.T01:CDS 50.0%
CATGCTTCACTCAAGCGCCA+TGG + Chr3:79461290-79461309 MsG0380016131.01.T01:CDS 55.0%
CATGGCGCTTGAGTGAAGCA+TGG - Chr3:79461292-79461311 None:intergenic 55.0%
CTACGTTTAGTGCCTCCCCA+TGG - Chr3:79461310-79461329 None:intergenic 55.0%
TGCTTCACTCAAGCGCCATG+GGG + Chr3:79461292-79461311 MsG0380016131.01.T01:CDS 55.0%
TTGGCCGTGAACTAGGAGCA+TGG + Chr3:79461335-79461354 MsG0380016131.01.T01:CDS 55.0%
!! TGGGGAGGCACTAAACGTAG+TGG + Chr3:79461310-79461329 MsG0380016131.01.T01:CDS 55.0%
GTGGGTCTCGACCAGAGGTA+TGG + Chr3:79460745-79460764 MsG0380016131.01.T01:intron 60.0%
TTCACTCAAGCGCCATGGGG+AGG + Chr3:79461295-79461314 MsG0380016131.01.T01:CDS 60.0%
! GACTGGTGGGTCTCGACCAG+AGG + Chr3:79460740-79460759 MsG0380016131.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79459635 79461375 79459635 ID=MsG0380016131.01;Name=MsG0380016131.01
Chr3 mRNA 79459635 79461375 79459635 ID=MsG0380016131.01.T01;Parent=MsG0380016131.01;Name=MsG0380016131.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0.8|0.5|1|1|1|6|0|199
Chr3 exon 79459635 79459732 79459635 ID=MsG0380016131.01.T01:exon:13390;Parent=MsG0380016131.01.T01
Chr3 exon 79460191 79460275 79460191 ID=MsG0380016131.01.T01:exon:13391;Parent=MsG0380016131.01.T01
Chr3 exon 79460684 79460761 79460684 ID=MsG0380016131.01.T01:exon:13392;Parent=MsG0380016131.01.T01
Chr3 exon 79460852 79461003 79460852 ID=MsG0380016131.01.T01:exon:13393;Parent=MsG0380016131.01.T01
Chr3 exon 79461104 79461164 79461104 ID=MsG0380016131.01.T01:exon:13394;Parent=MsG0380016131.01.T01
Chr3 exon 79461250 79461375 79461250 ID=MsG0380016131.01.T01:exon:13395;Parent=MsG0380016131.01.T01
Chr3 CDS 79459635 79459732 79459635 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Chr3 CDS 79460191 79460275 79460191 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Chr3 CDS 79460684 79460761 79460684 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Chr3 CDS 79460852 79461003 79460852 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Chr3 CDS 79461104 79461164 79461104 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Chr3 CDS 79461250 79461375 79461250 ID=MsG0380016131.01.T01:cds;Parent=MsG0380016131.01.T01
Gene Sequence

>MsG0380016131.01.T01

GTTTGTTATAATGTTCTGAAAATCGCCATTTACGCCATTCCAGATTCCGTGCATGAATTGAAGCAATATTTTATAAGTCTTCTCATGTATTCAGCAGAGATGGTGAAATGGATCAAAAACATCAAAATTGCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGACCTGTTGTTAGTGAAGGGCAGTACGAAAAAATATTGAAGTTTGTCTCGAACGCTAAGAGTGAGGGTGCGACAATTTTGACTGGTGGGTCTCGACCAGAGCATCTAAAGAAAGGATTCTTTGTTGAACCAACCATCATAACTGATGTGACTACTTCCATGCAAATTTGGAAAGAAGAAGTATTTGGACCTGTTCTGTGTGTAAAAACGTTTAGCACCGAGGAAGAAGCTATTGATCTAGCAAATGACACTATCTATGGCTTAGGTGCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGTGTAACTAAGGCATTTAAGGCCGGAATAGTATGGGTCAATTGCTGTCAGCCATGCTTCACTCAAGCGCCATGGGGAGGCACTAAACGTAGTGGTTTTGGCCGTGAACTAGGAGCATGGTATGACTCTATTTACTAA

Protein sequence

>MsG0380016131.01.T01

VCYNVLKIAIYAIPDSVHELKQYFISLLMYSAEMVKWIKNIKIADPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFVEPTIITDVTTSMQIWKEEVFGPVLCVKTFSTEEEAIDLANDTIYGLGAAVISNDLERCERVTKAFKAGIVWVNCCQPCFTQAPWGGTKRSGFGRELGAWYDSIY*