AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024727.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024727.01.T01 MTR_5g015370 86.364 110 0 1 168 277 52 146 3.24e-59 187
MsG0580024727.01.T01 MTR_5g015370 92.982 57 4 0 1 57 1 57 4.88e-30 112
MsG0580024727.01.T01 MTR_4g026950 78.182 110 9 1 168 277 33 127 1.68e-51 166
MsG0580024727.01.T01 MTR_4g026950 78.947 38 8 0 20 57 1 38 1.59e-12 64.7
MsG0580024727.01.T01 MTR_5g078090 71.818 110 16 1 168 277 52 146 3.30e-47 156
MsG0580024727.01.T01 MTR_5g078090 82.456 57 10 0 1 57 1 57 7.75e-27 103
MsG0580024727.01.T01 MTR_4g128910 35.455 110 56 1 168 277 49 143 3.22e-16 75.1
MsG0580024727.01.T01 MTR_5g016540 32.727 110 59 1 168 277 49 143 7.17e-14 68.6
MsG0580024727.01.T01 MTR_5g034130 30.000 110 62 1 168 277 49 143 2.46e-13 67.4
MsG0580024727.01.T01 MTR_5g034125 30.000 110 62 1 168 277 49 143 2.46e-13 67.4
MsG0580024727.01.T01 MTR_1g086480 30.000 110 62 1 168 277 49 143 2.64e-13 67.0
MsG0580024727.01.T01 MTR_6g005820 30.000 110 62 1 168 277 49 143 2.70e-13 67.0
MsG0580024727.01.T01 MTR_7g109960 30.000 110 62 1 168 277 49 143 2.72e-13 67.0
MsG0580024727.01.T01 MTR_8g077540 32.576 132 69 2 147 273 22 138 1.01e-12 65.5
MsG0580024727.01.T01 MTR_2g022200 33.645 107 56 1 168 274 56 147 1.28e-12 65.9
MsG0580024727.01.T01 MTR_8g077540 32.576 132 69 2 147 273 48 164 1.57e-12 65.5
MsG0580024727.01.T01 MTR_4g077640 26.316 133 83 1 145 277 26 143 3.49e-12 64.3
MsG0580024727.01.T01 MTR_1g076550 27.820 133 81 1 145 277 26 143 6.03e-12 63.5
MsG0580024727.01.T01 MTR_7g112090 37.000 100 48 1 178 277 62 146 2.22e-11 62.0
MsG0580024727.01.T01 MTR_5g007810 27.200 125 76 1 145 269 26 135 2.43e-11 62.0
MsG0580024727.01.T01 MTR_2g034640 37.500 96 45 1 178 273 62 142 4.69e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024727.01.T01 AT3G49870 80.000 110 7 1 168 277 33 127 2.73e-55 176
MsG0580024727.01.T01 AT3G49870 89.474 38 4 0 20 57 1 38 1.62e-14 70.1
MsG0580024727.01.T01 AT3G49870 80.000 110 7 1 168 277 52 146 6.58e-55 176
MsG0580024727.01.T01 AT3G49870 91.228 57 5 0 1 57 1 57 3.39e-28 107
MsG0580024727.01.T01 AT5G67560 78.182 110 9 1 168 277 52 146 2.13e-53 172
MsG0580024727.01.T01 AT5G67560 89.474 57 6 0 1 57 1 57 1.58e-28 108
MsG0580024727.01.T01 AT5G37680 70.909 110 17 1 168 277 5 99 4.63e-48 157
MsG0580024727.01.T01 AT5G37680 70.909 110 17 1 168 277 52 146 1.79e-47 157
MsG0580024727.01.T01 AT5G37680 82.456 57 10 0 1 57 1 57 4.36e-27 104
MsG0580024727.01.T01 AT3G49860 71.818 110 16 1 168 277 44 138 1.94e-47 156
MsG0580024727.01.T01 AT3G49860 36.800 125 69 2 18 142 10 124 3.38e-14 69.7
MsG0580024727.01.T01 AT5G52210 36.792 106 52 1 168 273 56 146 2.90e-15 73.2
MsG0580024727.01.T01 AT5G52210 36.792 106 52 1 168 273 56 146 2.90e-15 73.2
MsG0580024727.01.T01 AT2G24765 31.818 110 60 1 168 277 49 143 5.37e-15 72.0
MsG0580024727.01.T01 AT5G14670 30.000 110 62 1 168 277 49 143 2.58e-13 67.4
MsG0580024727.01.T01 AT5G14670 30.000 110 62 1 168 277 49 143 2.58e-13 67.4
MsG0580024727.01.T01 AT5G14670 30.000 110 62 1 168 277 49 143 2.79e-13 67.4
MsG0580024727.01.T01 AT1G10630 30.000 110 62 1 168 277 49 143 2.94e-13 67.0
MsG0580024727.01.T01 AT1G10630 30.000 110 62 1 168 277 49 143 2.94e-13 67.0
MsG0580024727.01.T01 AT2G47170 30.000 110 62 1 168 277 49 143 3.22e-13 67.0
MsG0580024727.01.T01 AT2G47170 30.000 110 62 1 168 277 49 143 3.22e-13 67.0
MsG0580024727.01.T01 AT2G47170 30.000 110 62 1 168 277 49 143 3.22e-13 67.0
MsG0580024727.01.T01 AT3G62290 30.000 110 62 1 168 277 49 143 3.25e-13 67.0
MsG0580024727.01.T01 AT3G62290 30.000 110 62 1 168 277 49 143 3.25e-13 67.0
MsG0580024727.01.T01 AT3G62290 30.000 110 62 1 168 277 49 143 3.25e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G23490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT1G70490 30.000 110 62 1 168 277 49 143 3.28e-13 67.0
MsG0580024727.01.T01 AT2G15310 29.091 110 63 1 168 277 49 143 1.96e-12 65.1
MsG0580024727.01.T01 AT3G03120 26.316 133 83 1 145 277 26 143 4.41e-12 63.9
MsG0580024727.01.T01 AT2G24765 30.851 94 50 1 168 261 49 127 4.69e-12 62.8
MsG0580024727.01.T01 AT3G22950 27.820 133 81 1 145 277 26 143 8.12e-12 63.2
MsG0580024727.01.T01 AT3G22950 27.820 133 81 1 145 277 26 143 8.12e-12 63.2
MsG0580024727.01.T01 AT2G18390 32.031 128 67 2 147 269 22 134 1.51e-11 62.4
MsG0580024727.01.T01 AT5G17060 25.564 133 84 1 145 277 26 143 1.59e-11 62.4
MsG0580024727.01.T01 AT5G17060 25.564 133 84 1 145 277 26 143 1.59e-11 62.4
MsG0580024727.01.T01 AT4G02080 31.655 139 75 3 135 273 24 142 5.86e-11 60.8
MsG0580024727.01.T01 AT3G62560 37.500 96 45 1 178 273 62 142 5.91e-11 60.8

Find 73 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAGTGGTATCCCTTTAT+TGG 0.240394 5:-8897059 MsG0580024727.01.T01:CDS
CTTGATATGCTAAGGTTATC+TGG 0.245165 5:+8897115 None:intergenic
TTGTTTCCCAACACCAATAA+AGG 0.252942 5:+8897046 None:intergenic
AGATCTTTGCAAATAGCTTT+AGG 0.270506 5:+8899751 None:intergenic
TCTCAGTTTGGACTTCATTA+AGG 0.298702 5:-8899731 MsG0580024727.01.T01:CDS
GTGGTTGACTGGTTGTTTAC+AGG 0.303508 5:-8899676 MsG0580024727.01.T01:intron
GAGATGGAGTTATCTCTTAT+AGG 0.305630 5:-8901195 MsG0580024727.01.T01:CDS
ACAATAAAGTTATGGGATCT+TGG 0.325152 5:-8898087 MsG0580024727.01.T01:CDS
TTGCAAATAGCTTTAGGAAT+AGG 0.330450 5:+8899757 None:intergenic
GAAACAGACTTCTTATCTTC+TGG 0.332999 5:-8898000 MsG0580024727.01.T01:CDS
CAATAAAGTTATGGGATCTT+GGG 0.353435 5:-8898086 MsG0580024727.01.T01:CDS
AGATGGAGTTATCTCTTATA+GGG 0.367558 5:-8901194 MsG0580024727.01.T01:CDS
CCATCTCCTGCTTGAAGAAA+AGG 0.375686 5:+8901211 None:intergenic
GCAATGTTACAATAAAGTTA+TGG 0.384617 5:-8898095 MsG0580024727.01.T01:CDS
GGAAGAGGTAGCAAGCTTGC+AGG 0.386964 5:+8899778 None:intergenic
CAATGTTACAATAAAGTTAT+GGG 0.399340 5:-8898094 MsG0580024727.01.T01:CDS
GATGGCAGATGGAGGGGAAT+GGG 0.421849 5:-8900255 MsG0580024727.01.T01:CDS
GAGTGCAAAGCGAGGGAAGA+AGG 0.427399 5:-8902071 None:intergenic
GGTATCCCTTTATTGGTGTT+GGG 0.432316 5:-8897052 MsG0580024727.01.T01:CDS
TGTTTCCCAACACCAATAAA+GGG 0.437850 5:+8897047 None:intergenic
CAACCAGTCAACCACCAGTA+TGG 0.443324 5:+8899684 None:intergenic
GGATGGCAGATGGAGGGGAA+TGG 0.451930 5:-8900256 MsG0580024727.01.T01:CDS
TGGTATCCCTTTATTGGTGT+TGG 0.453471 5:-8897053 MsG0580024727.01.T01:CDS
CTTATAGGGCTTCAGAATGC+TGG 0.462107 5:-8901180 MsG0580024727.01.T01:CDS
AGGGACGCGTATCTTACATT+TGG 0.464988 5:+8896981 None:intergenic
CTAACACAAACAAATAGAAT+AGG 0.469784 5:+8900964 None:intergenic
CTGCATTGACTCTGATGAGC+AGG 0.474753 5:-8899471 MsG0580024727.01.T01:CDS
ATACCATACTGGTGGTTGAC+TGG 0.479883 5:-8899687 MsG0580024727.01.T01:CDS
TATTTGCAAAGATCTCAGTT+TGG 0.480024 5:-8899743 MsG0580024727.01.T01:CDS
GTTCACTTCTTGATATGCTA+AGG 0.480587 5:+8897107 None:intergenic
TGCAGGTGGGATTCAATATG+AGG 0.498889 5:-8898131 MsG0580024727.01.T01:intron
GGACTTCATTAAGGTTGTTG+AGG 0.502091 5:-8899722 MsG0580024727.01.T01:CDS
CAAAGCGAGGGAAGAAGGAT+AGG 0.507495 5:-8902066 None:intergenic
GACAAGGATGGCAGATGGAG+GGG 0.509729 5:-8900261 MsG0580024727.01.T01:CDS
CAGATGGAGGGGAATGGGAA+TGG 0.526638 5:-8900250 MsG0580024727.01.T01:intron
TTACAGCAACAACATTTACA+AGG 0.527139 5:+8901148 None:intergenic
GGACAAGGATGGCAGATGGA+GGG 0.536173 5:-8900262 MsG0580024727.01.T01:CDS
AATATGAGGAAAGTAACAAA+AGG 0.537108 5:-8898117 MsG0580024727.01.T01:CDS
GGAAACAAGATTGACAAGGC+AGG 0.537382 5:-8897031 MsG0580024727.01.T01:CDS
TTTCACTTCAGAGCAGCAAA+GGG 0.540052 5:-8899408 MsG0580024727.01.T01:intron
CTGCCATCCTTGTCCTCAAG+TGG 0.546774 5:+8900270 None:intergenic
GAAACAAGATTGACAAGGCA+GGG 0.547885 5:-8897030 MsG0580024727.01.T01:CDS
TCAATTGCCACTTGAGGACA+AGG 0.551033 5:-8900277 MsG0580024727.01.T01:CDS
CATGTCCTCGCTGTATCCAC+CGG 0.552693 5:+8901034 None:intergenic
CGTGAAGCATAACTTACTGT+AGG 0.554338 5:+8901008 None:intergenic
CCAACGATATGATACCATAC+TGG 0.557578 5:-8899698 MsG0580024727.01.T01:CDS
ATTGACTCTGATGAGCAGGC+AGG 0.557876 5:-8899467 MsG0580024727.01.T01:CDS
CCAGTATGGTATCATATCGT+TGG 0.559322 5:+8899698 None:intergenic
AGGACAAGGATGGCAGATGG+AGG 0.563787 5:-8900263 MsG0580024727.01.T01:CDS
AAAGGGATACCACTCAATGA+TGG 0.564623 5:+8897064 None:intergenic
AACCTAGGTTCCGTAGCATG+TGG 0.564867 5:-8898059 MsG0580024727.01.T01:CDS
AATAAAGTTATGGGATCTTG+GGG 0.566711 5:-8898085 MsG0580024727.01.T01:CDS
GCGAGGGAAGAAGGATAGGA+AGG 0.567798 5:-8902062 MsG0580024727.01.T01:five_prime_UTR
ATTTCACTTCAGAGCAGCAA+AGG 0.568105 5:-8899409 MsG0580024727.01.T01:CDS
AGTAACGTTCCCACATGCTA+CGG 0.585403 5:+8898049 None:intergenic
TTGAGGACAAGGATGGCAGA+TGG 0.599207 5:-8900266 MsG0580024727.01.T01:CDS
ATAGCTTTAGGAATAGGAAG+AGG 0.599549 5:+8899763 None:intergenic
TACAGCAACAACATTTACAA+GGG 0.602506 5:+8901149 None:intergenic
CTGAGCAAGCCATCATTGAG+TGG 0.608208 5:-8897073 MsG0580024727.01.T01:CDS
TTGCCACTTGAGGACAAGGA+TGG 0.612047 5:-8900273 MsG0580024727.01.T01:CDS
TAAAGTTATGGGATCTTGGG+GGG 0.613674 5:-8898083 MsG0580024727.01.T01:CDS
ACCTAGGTTCCGTAGCATGT+GGG 0.619889 5:-8898058 MsG0580024727.01.T01:CDS
AAACAAGATTGACAAGGCAG+GGG 0.626437 5:-8897029 MsG0580024727.01.T01:CDS
ACGCGTATCTTACATTTGGT+CGG 0.630887 5:+8896985 None:intergenic
TCCCACATGCTACGGAACCT+AGG 0.638908 5:+8898057 None:intergenic
GTGGGAACGTTACTGTCGTG+CGG 0.647989 5:-8898040 MsG0580024727.01.T01:CDS
AGGACTGTTGAATCAGACAT+TGG 0.650515 5:-8899447 MsG0580024727.01.T01:CDS
GTCTGTTTCATACACAATAG+CGG 0.651971 5:+8898014 None:intergenic
ACGATATGATACCATACTGG+TGG 0.660873 5:-8899695 MsG0580024727.01.T01:CDS
GATGGATCAATTGCCACTTG+AGG 0.662289 5:-8900283 MsG0580024727.01.T01:CDS
ATAAAGTTATGGGATCTTGG+GGG 0.665703 5:-8898084 MsG0580024727.01.T01:CDS
GTTGGGAAACAAGATTGACA+AGG 0.714570 5:-8897035 MsG0580024727.01.T01:CDS
TTAGACCGGTGGATACAGCG+AGG 0.780785 5:-8901039 MsG0580024727.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTGTTTGTAATAATT+TGG - Chr5:8897263-8897282 MsG0580024727.01.T01:intron 15.0%
!!! TTGTTTATTTTTTGTTGAAT+AGG - Chr5:8897220-8897239 MsG0580024727.01.T01:intron 15.0%
!! AAAAAGAATAACTCAACAAT+TGG + Chr5:8901372-8901391 None:intergenic 20.0%
!! AAGAATAATATTAAGGCTTT+AGG + Chr5:8901273-8901292 None:intergenic 20.0%
!! AATCAGCAAGAATAATATTA+AGG + Chr5:8901280-8901299 None:intergenic 20.0%
!! ATTTCTATTGTTATAACTGA+CGG - Chr5:8899498-8899517 MsG0580024727.01.T01:intron 20.0%
!! CAATGTTACAATAAAGTTAT+GGG - Chr5:8900960-8900979 MsG0580024727.01.T01:intron 20.0%
!! TAAATAAACAAGGTAAAATC+TGG + Chr5:8901346-8901365 None:intergenic 20.0%
!! TAATAAGCTATACGATAAAT+AGG - Chr5:8898312-8898331 MsG0580024727.01.T01:intron 20.0%
!! TAGTTAATTGTTATCAATCA+CGG + Chr5:8900556-8900575 None:intergenic 20.0%
!! TCAGTTATAACAATAGAAAT+AGG + Chr5:8899498-8899517 None:intergenic 20.0%
!! TGATTTACAAATCATATCAA+AGG + Chr5:8897312-8897331 None:intergenic 20.0%
!! TTCAATTATTTGATACAGAT+GGG - Chr5:8900359-8900378 MsG0580024727.01.T01:intron 20.0%
!!! AAAAATGATTTTTATCCCTA+AGG + Chr5:8897631-8897650 None:intergenic 20.0%
!!! AAAATGATTTTTATCCCTAA+GGG + Chr5:8897630-8897649 None:intergenic 20.0%
!!! CCTAATTTTATTATTCACTT+GGG - Chr5:8900826-8900845 MsG0580024727.01.T01:intron 20.0%
!!! CTTTCCTGTATTTTTTTTAA+CGG + Chr5:8900700-8900719 None:intergenic 20.0%
!!! GATATGATTTGTAAATCAAT+TGG - Chr5:8897314-8897333 MsG0580024727.01.T01:intron 20.0%
!!! TAGAAAAAAGTTTGTTATTG+TGG - Chr5:8898231-8898250 MsG0580024727.01.T01:intron 20.0%
!!! TATTTATATTGCTTTTAGAC+CGG - Chr5:8898001-8898020 MsG0580024727.01.T01:CDS 20.0%
!!! TCCTAATTTTATTATTCACT+TGG - Chr5:8900825-8900844 MsG0580024727.01.T01:intron 20.0%
!!! TTAGTTTGAGAAAAAACAAT+GGG - Chr5:8897139-8897158 MsG0580024727.01.T01:CDS 20.0%
!!! TTGAAATTTTTTCCTTACTT+GGG - Chr5:8899670-8899689 MsG0580024727.01.T01:intron 20.0%
!!! TTTAGTTTGAGAAAAAACAA+TGG - Chr5:8897138-8897157 MsG0580024727.01.T01:CDS 20.0%
!!! TTTCCTGTATTTTTTTTAAC+GGG + Chr5:8900699-8900718 None:intergenic 20.0%
!!! TTTGAAATTTTTTCCTTACT+TGG - Chr5:8899669-8899688 MsG0580024727.01.T01:intron 20.0%
! AAACTGATGTGTTCAAAAAT+GGG + Chr5:8899140-8899159 None:intergenic 25.0%
! AAAGTCAATATGTACTTCAA+AGG + Chr5:8900752-8900771 None:intergenic 25.0%
! AAATATGTAGCATGATGTTA+TGG - Chr5:8899964-8899983 MsG0580024727.01.T01:intron 25.0%
! AAATTAAGTGCTATGTGAAA+AGG + Chr5:8897693-8897712 None:intergenic 25.0%
! AACCATTTCTATAATCAAAG+AGG - Chr5:8897456-8897475 MsG0580024727.01.T01:intron 25.0%
! AAGTCAATATGTACTTCAAA+GGG + Chr5:8900751-8900770 None:intergenic 25.0%
! AATATGAGGAAAGTAACAAA+AGG - Chr5:8900937-8900956 MsG0580024727.01.T01:intron 25.0%
! AATATGTAGCATGATGTTAT+GGG - Chr5:8899965-8899984 MsG0580024727.01.T01:intron 25.0%
! AATTAAGTGCTATGTGAAAA+GGG + Chr5:8897692-8897711 None:intergenic 25.0%
! ACAAATACAATAGATCTAAG+AGG + Chr5:8901782-8901801 None:intergenic 25.0%
! ACATCAACTTAAACATCATT+TGG - Chr5:8899820-8899839 MsG0580024727.01.T01:intron 25.0%
! ACCATTTCTATAATCAAAGA+GGG - Chr5:8897457-8897476 MsG0580024727.01.T01:intron 25.0%
! AGGATCAGTTTGATTAATTA+AGG - Chr5:8900602-8900621 MsG0580024727.01.T01:intron 25.0%
! ATAACATCATGCTACATATT+TGG + Chr5:8899965-8899984 None:intergenic 25.0%
! ATGATTAGAAGGATTCATTA+GGG - Chr5:8898269-8898288 MsG0580024727.01.T01:intron 25.0%
! CAATTGGTTGTAAATAAACA+AGG + Chr5:8901356-8901375 None:intergenic 25.0%
! CACATTAGAAGGAAAAAATT+GGG - Chr5:8898705-8898724 MsG0580024727.01.T01:intron 25.0%
! CAGATAAAATACATGCAATA+AGG + Chr5:8900062-8900081 None:intergenic 25.0%
! CCCAAGTGAATAATAAAATT+AGG + Chr5:8900829-8900848 None:intergenic 25.0%
! CTAACACAAACAAATAGAAT+AGG + Chr5:8898093-8898112 None:intergenic 25.0%
! GAGTAATAAAAATTGGATGA+AGG + Chr5:8898481-8898500 None:intergenic 25.0%
! GCAATGTTACAATAAAGTTA+TGG - Chr5:8900959-8900978 MsG0580024727.01.T01:intron 25.0%
! GTTCAATTATTTGATACAGA+TGG - Chr5:8900358-8900377 MsG0580024727.01.T01:intron 25.0%
! TAAACTGATGTGTTCAAAAA+TGG + Chr5:8899141-8899160 None:intergenic 25.0%
! TAACATCATGCTACATATTT+GGG + Chr5:8899964-8899983 None:intergenic 25.0%
! TACTTAGATCCTAATCTATA+CGG + Chr5:8900654-8900673 None:intergenic 25.0%
! TAGTACCAAATATCATATTG+TGG + Chr5:8900470-8900489 None:intergenic 25.0%
! TATACGATAAATAGGAATCA+GGG - Chr5:8898320-8898339 MsG0580024727.01.T01:intron 25.0%
! TATCAGGTTATCAAACAAAT+AGG - Chr5:8899991-8900010 MsG0580024727.01.T01:intron 25.0%
! TGGTACTATTGTCAAATAAT+GGG - Chr5:8900482-8900501 MsG0580024727.01.T01:intron 25.0%
! TTGGTACTATTGTCAAATAA+TGG - Chr5:8900481-8900500 MsG0580024727.01.T01:intron 25.0%
! TTGTTCCACAATATGATATT+TGG - Chr5:8900462-8900481 MsG0580024727.01.T01:intron 25.0%
! TTTCAACATATAAAAACACC+AGG + Chr5:8901465-8901484 None:intergenic 25.0%
!! AGAGATTTTCAATACATACA+GGG - Chr5:8899558-8899577 MsG0580024727.01.T01:intron 25.0%
!! ATTTGTTTGATAACCTGATA+AGG + Chr5:8899991-8900010 None:intergenic 25.0%
!! CTGTATAATACCAATTTTCA+CGG - Chr5:8899701-8899720 MsG0580024727.01.T01:CDS 25.0%
!! GATCTATTGTATTTGTCTTT+TGG - Chr5:8901786-8901805 MsG0580024727.01.T01:intron 25.0%
!! TAGCACTTAATTTCAGTTTT+AGG - Chr5:8897700-8897719 MsG0580024727.01.T01:intron 25.0%
!! TATAGCGGAAATGATAATTA+GGG + Chr5:8899045-8899064 None:intergenic 25.0%
!! TATTGCATGTATTTTATCTG+AGG - Chr5:8900062-8900081 MsG0580024727.01.T01:intron 25.0%
!! TGTATAATACCAATTTTCAC+GGG - Chr5:8899702-8899721 MsG0580024727.01.T01:CDS 25.0%
!! TTTTGAACACATCAGTTTAT+AGG - Chr5:8899142-8899161 MsG0580024727.01.T01:intron 25.0%
!!! ACCTTTTTTCTGTTGAAAAT+TGG - Chr5:8901735-8901754 MsG0580024727.01.T01:intron 25.0%
!!! AGTTGTTTTAGTTTTTGTTG+GGG - Chr5:8901309-8901328 MsG0580024727.01.T01:intron 25.0%
!!! ATTTTTTGTTGAATAGGTTC+TGG - Chr5:8897226-8897245 MsG0580024727.01.T01:intron 25.0%
!!! CAGTTGTTTTAGTTTTTGTT+GGG - Chr5:8901308-8901327 MsG0580024727.01.T01:intron 25.0%
!!! CCTTTTTTCTGTTGAAAATT+GGG - Chr5:8901736-8901755 MsG0580024727.01.T01:intron 25.0%
AACATCATGCTACATATTTG+GGG + Chr5:8899963-8899982 None:intergenic 30.0%
AACTTAAACATCATTTGGCA+GGG - Chr5:8899825-8899844 MsG0580024727.01.T01:intron 30.0%
AATAAAGTTATGGGATCTTG+GGG - Chr5:8900969-8900988 MsG0580024727.01.T01:CDS 30.0%
AATTATTTGATACAGATGGG+AGG - Chr5:8900362-8900381 MsG0580024727.01.T01:intron 30.0%
ACAATAAAGTTATGGGATCT+TGG - Chr5:8900967-8900986 MsG0580024727.01.T01:intron 30.0%
ACATATAAAAACACCAGGAA+AGG + Chr5:8901460-8901479 None:intergenic 30.0%
AGAAAAAACAATGGGATTGT+GGG - Chr5:8897147-8897166 MsG0580024727.01.T01:intron 30.0%
AGATCTTTGCAAATAGCTTT+AGG + Chr5:8899306-8899325 None:intergenic 30.0%
AGATGGAGTTATCTCTTATA+GGG - Chr5:8897860-8897879 MsG0580024727.01.T01:intron 30.0%
AGATTTGTCAGTATAGATGA+TGG - Chr5:8900170-8900189 MsG0580024727.01.T01:intron 30.0%
ATGTGTTCAAAAATGGGATT+TGG + Chr5:8899134-8899153 None:intergenic 30.0%
ATTGTCCATTGTGTATACAA+GGG - Chr5:8899912-8899931 MsG0580024727.01.T01:intron 30.0%
CAATAAAGTTATGGGATCTT+GGG - Chr5:8900968-8900987 MsG0580024727.01.T01:intron 30.0%
CACTGCTAATATCAAAGTTT+CGG + Chr5:8897356-8897375 None:intergenic 30.0%
CAGATAGTTAATACATACGT+GGG - Chr5:8898202-8898221 MsG0580024727.01.T01:intron 30.0%
CAGTTTATAGGAACTACAAA+TGG - Chr5:8899154-8899173 MsG0580024727.01.T01:intron 30.0%
CTATACGATAAATAGGAATC+AGG - Chr5:8898319-8898338 MsG0580024727.01.T01:intron 30.0%
CTCTTCATTGAATAATGCAA+AGG - Chr5:8898434-8898453 MsG0580024727.01.T01:intron 30.0%
GACTTGATATACAGAAATGA+AGG - Chr5:8899794-8899813 MsG0580024727.01.T01:CDS 30.0%
GAGAATTAGTTAGGTTACTT+GGG - Chr5:8899470-8899489 MsG0580024727.01.T01:CDS 30.0%
GATCCCGTTAAAAAAAATAC+AGG - Chr5:8900693-8900712 MsG0580024727.01.T01:intron 30.0%
GATGATTAGAAGGATTCATT+AGG - Chr5:8898268-8898287 MsG0580024727.01.T01:intron 30.0%
GATTATAATAGACCAGGTTT+CGG - Chr5:8900201-8900220 MsG0580024727.01.T01:intron 30.0%
GCACATTAGAAGGAAAAAAT+TGG - Chr5:8898704-8898723 MsG0580024727.01.T01:intron 30.0%
GGTAGATTGACTATTACATA+GGG - Chr5:8898901-8898920 MsG0580024727.01.T01:intron 30.0%
GGTAGTTCAGTGTTAAATAA+CGG - Chr5:8900388-8900407 MsG0580024727.01.T01:intron 30.0%
GTATAGATTAGGATCTAAGT+AGG - Chr5:8900653-8900672 MsG0580024727.01.T01:intron 30.0%
TACAGCAACAACATTTACAA+GGG + Chr5:8897908-8897927 None:intergenic 30.0%
TAGTTGAGCATAACTATGTT+CGG + Chr5:8901406-8901425 None:intergenic 30.0%
TATTTGCAAAGATCTCAGTT+TGG - Chr5:8899311-8899330 MsG0580024727.01.T01:intron 30.0%
TCAAAATGCATGAGCTTATT+AGG - Chr5:8897797-8897816 MsG0580024727.01.T01:intron 30.0%
TCAGTGTTAAATAACGGTTA+TGG - Chr5:8900394-8900413 MsG0580024727.01.T01:intron 30.0%
TCCCTCTTTGATTATAGAAA+TGG + Chr5:8897461-8897480 None:intergenic 30.0%
TGAGAATTAGTTAGGTTACT+TGG - Chr5:8899469-8899488 MsG0580024727.01.T01:CDS 30.0%
TGATCTGATTATAATAGACC+AGG - Chr5:8900195-8900214 MsG0580024727.01.T01:intron 30.0%
TGCATTAAAATGCTCCTATT+TGG - Chr5:8899420-8899439 MsG0580024727.01.T01:CDS 30.0%
TGGGTAATCAGCTTAATTAA+GGG - Chr5:8897396-8897415 MsG0580024727.01.T01:intron 30.0%
TGGTAGATTGACTATTACAT+AGG - Chr5:8898900-8898919 MsG0580024727.01.T01:intron 30.0%
TGTGTTCAAAAATGGGATTT+GGG + Chr5:8899133-8899152 None:intergenic 30.0%
TTACAGCAACAACATTTACA+AGG + Chr5:8897909-8897928 None:intergenic 30.0%
TTATAGGAACTACAAATGGT+TGG - Chr5:8899158-8899177 MsG0580024727.01.T01:intron 30.0%
TTATATCCAGTATCACTGAT+TGG - Chr5:8898958-8898977 MsG0580024727.01.T01:intron 30.0%
TTATCTGAATTCGTGAAACT+TGG - Chr5:8901865-8901884 MsG0580024727.01.T01:intron 30.0%
TTGGGTAATCAGCTTAATTA+AGG - Chr5:8897395-8897414 MsG0580024727.01.T01:intron 30.0%
! ATGAAGTTTTCTATCTCTCA+AGG - Chr5:8900867-8900886 MsG0580024727.01.T01:intron 30.0%
! CAATTCTGAAAAGTCTTGAT+TGG - Chr5:8901686-8901705 MsG0580024727.01.T01:intron 30.0%
! CCCAATTTTCAACAGAAAAA+AGG + Chr5:8901739-8901758 None:intergenic 30.0%
! GAGAGATTTTCAATACATAC+AGG - Chr5:8899557-8899576 MsG0580024727.01.T01:intron 30.0%
! GATTATAATAGACCAGGTTT+TGG - Chr5:8900201-8900220 MsG0580024727.01.T01:intron 30.0%
! GTATAGCGGAAATGATAATT+AGG + Chr5:8899046-8899065 None:intergenic 30.0%
! TCCAATTTTTATTACTCCCT+CGG - Chr5:8898484-8898503 MsG0580024727.01.T01:intron 30.0%
! TGAAGTTTTCTATCTCTCAA+GGG - Chr5:8900868-8900887 MsG0580024727.01.T01:intron 30.0%
! TGTTTACAGGTTAAGTATTG+CGG - Chr5:8899391-8899410 MsG0580024727.01.T01:intron 30.0%
! TTGTTTGTGTTAGTCTGTTA+GGG - Chr5:8898100-8898119 MsG0580024727.01.T01:CDS 30.0%
! TTTGTTTGTGTTAGTCTGTT+AGG - Chr5:8898099-8898118 MsG0580024727.01.T01:CDS 30.0%
! TTTTTGCGTGAGAATTAGTT+AGG - Chr5:8899461-8899480 MsG0580024727.01.T01:CDS 30.0%
!! TTAACGAAATCGATTTGTAC+AGG + Chr5:8901525-8901544 None:intergenic 30.0%
!! TTGCAAATAGCTTTAGGAAT+AGG + Chr5:8899300-8899319 None:intergenic 30.0%
!!! CAGTTTTTTTAGCAGTTAGA+AGG - Chr5:8900582-8900601 MsG0580024727.01.T01:intron 30.0%
!!! GCAGTTGTTTTAGTTTTTGT+TGG - Chr5:8901307-8901326 MsG0580024727.01.T01:intron 30.0%
!!! TTCTCTACGCTTTTTCATAT+AGG + Chr5:8901497-8901516 None:intergenic 30.0%
!!! TTTCAGTTTTAGGTTGTCTT+TGG - Chr5:8897710-8897729 MsG0580024727.01.T01:intron 30.0%
AAGATGGTACCGTATAGATT+AGG - Chr5:8900642-8900661 MsG0580024727.01.T01:intron 35.0%
AAGCAGAGTAATGCAATCAA+AGG + Chr5:8897668-8897687 None:intergenic 35.0%
AATGATAATTAGGGTCCTTC+TGG + Chr5:8899036-8899055 None:intergenic 35.0%
ACAAAGTCATAGTTGCAAGA+TGG - Chr5:8900626-8900645 MsG0580024727.01.T01:intron 35.0%
ACATAGTTATGCTCAACTAC+TGG - Chr5:8901407-8901426 MsG0580024727.01.T01:intron 35.0%
AGTTGAGCATAACTATGTTC+GGG + Chr5:8901405-8901424 None:intergenic 35.0%
ATAAAGTTATGGGATCTTGG+GGG - Chr5:8900970-8900989 MsG0580024727.01.T01:CDS 35.0%
ATCTGTTCTTATCTGATTGC+AGG - Chr5:8900906-8900925 MsG0580024727.01.T01:intron 35.0%
ATTACATAGGGAAGAGGTTA+AGG - Chr5:8898913-8898932 MsG0580024727.01.T01:intron 35.0%
ATTGAGTGGTATCCCTTTAT+TGG - Chr5:8901995-8902014 MsG0580024727.01.T01:five_prime_UTR 35.0%
CAACTTAAACATCATTTGGC+AGG - Chr5:8899824-8899843 MsG0580024727.01.T01:intron 35.0%
CAGCTTAATTAAGGGCTTAT+TGG - Chr5:8897404-8897423 MsG0580024727.01.T01:intron 35.0%
CATTGTCCATTGTGTATACA+AGG - Chr5:8899911-8899930 MsG0580024727.01.T01:intron 35.0%
CCACGTATGTATTAACTATC+TGG + Chr5:8898204-8898223 None:intergenic 35.0%
CCAGATAGTTAATACATACG+TGG - Chr5:8898201-8898220 MsG0580024727.01.T01:intron 35.0%
CGGTCAAACTGTATTTATGT+AGG - Chr5:8897484-8897503 MsG0580024727.01.T01:intron 35.0%
CTATAATCAAAGAGGGAATG+CGG - Chr5:8897464-8897483 MsG0580024727.01.T01:intron 35.0%
CTGGATATAAGATCAAGAGA+TGG + Chr5:8898948-8898967 None:intergenic 35.0%
CTTGATATGCTAAGGTTATC+TGG + Chr5:8901942-8901961 None:intergenic 35.0%
CTTGATTATCTCACAACATG+TGG - Chr5:8901615-8901634 MsG0580024727.01.T01:intron 35.0%
CTTGTATACACAATGGACAA+TGG + Chr5:8899913-8899932 None:intergenic 35.0%
GAAACAGACTTCTTATCTTC+TGG - Chr5:8901054-8901073 MsG0580024727.01.T01:intron 35.0%
GAAGATCATGATGAAACCAT+CGG - Chr5:8898737-8898756 MsG0580024727.01.T01:intron 35.0%
GAGAAAAAACAATGGGATTG+TGG - Chr5:8897146-8897165 MsG0580024727.01.T01:intron 35.0%
GAGATGGAGTTATCTCTTAT+AGG - Chr5:8897859-8897878 MsG0580024727.01.T01:intron 35.0%
GCTAGCACAGTAATTAGTAA+TGG + Chr5:8899217-8899236 None:intergenic 35.0%
GCTATAGCAATGTATCATAG+CGG - Chr5:8900421-8900440 MsG0580024727.01.T01:intron 35.0%
GTCTGTTTCATACACAATAG+CGG + Chr5:8901043-8901062 None:intergenic 35.0%
GTGTTAAATAACGGTTATGG+CGG - Chr5:8900397-8900416 MsG0580024727.01.T01:intron 35.0%
GTTCACTTCTTGATATGCTA+AGG + Chr5:8901950-8901969 None:intergenic 35.0%
TAAGACCTTGAGAAAAACTC+TGG - Chr5:8899003-8899022 MsG0580024727.01.T01:intron 35.0%
TATACGAGAAGTAAGAGTAG+TGG - Chr5:8898170-8898189 MsG0580024727.01.T01:intron 35.0%
TATTAGCATCAAGCAGCTTA+TGG - Chr5:8898682-8898701 MsG0580024727.01.T01:intron 35.0%
TCTCAGTTTGGACTTCATTA+AGG - Chr5:8899323-8899342 MsG0580024727.01.T01:intron 35.0%
TGATGCTAATATTCTACCGT+TGG + Chr5:8898673-8898692 None:intergenic 35.0%
TGTTATCTACTGACATCAAG+AGG - Chr5:8900116-8900135 MsG0580024727.01.T01:intron 35.0%
TGTTTCCCAACACCAATAAA+GGG + Chr5:8902010-8902029 None:intergenic 35.0%
TTAGAAGGAAAAAATTGGGC+TGG - Chr5:8898709-8898728 MsG0580024727.01.T01:intron 35.0%
TTCCGCTATACTAATGAGTA+GGG - Chr5:8899055-8899074 MsG0580024727.01.T01:intron 35.0%
TTGACTATTACATAGGGAAG+AGG - Chr5:8898907-8898926 MsG0580024727.01.T01:intron 35.0%
TTGTTTCCCAACACCAATAA+AGG + Chr5:8902011-8902030 None:intergenic 35.0%
TTTCCGCTATACTAATGAGT+AGG - Chr5:8899054-8899073 MsG0580024727.01.T01:intron 35.0%
! AAGGTAAAATCTGGTAGTGA+TGG + Chr5:8901337-8901356 None:intergenic 35.0%
! ACACTGACTACTTTCATTGA+TGG + Chr5:8898585-8898604 None:intergenic 35.0%
! ACTTAATGCACTGACAAGTA+TGG + Chr5:8899242-8899261 None:intergenic 35.0%
! AGTAGTTCTGCTGTGTAATA+AGG - Chr5:8900718-8900737 MsG0580024727.01.T01:intron 35.0%
! ATTTTATCTGAGGAAGGTCT+TGG - Chr5:8900072-8900091 MsG0580024727.01.T01:intron 35.0%
! CAAGACTTTTCAGAATTGAG+CGG + Chr5:8901684-8901703 None:intergenic 35.0%
! GCATGTATTTTATCTGAGGA+AGG - Chr5:8900066-8900085 MsG0580024727.01.T01:intron 35.0%
! TTCGGTGTAGATATTCTACA+GGG - Chr5:8900250-8900269 MsG0580024727.01.T01:intron 35.0%
! TTTCGGTGTAGATATTCTAC+AGG - Chr5:8900249-8900268 MsG0580024727.01.T01:intron 35.0%
! TTTTATCTGAGGAAGGTCTT+GGG - Chr5:8900073-8900092 MsG0580024727.01.T01:intron 35.0%
!! AGTTTGTTATTGTGGTAGTC+AGG - Chr5:8898239-8898258 MsG0580024727.01.T01:intron 35.0%
!! ATAGCTTTAGGAATAGGAAG+AGG + Chr5:8899294-8899313 None:intergenic 35.0%
!! TTATATTGCTTTTAGACCGG+TGG - Chr5:8898004-8898023 MsG0580024727.01.T01:CDS 35.0%
!! TTTTGAAGGTGCATACAAGA+AGG - Chr5:8900317-8900336 MsG0580024727.01.T01:intron 35.0%
!!! CTAGGTTTTGGCTAAAAAAG+TGG - Chr5:8898856-8898875 MsG0580024727.01.T01:intron 35.0%
!!! TGCTCAACTACTGGTTTTTT+AGG - Chr5:8901416-8901435 MsG0580024727.01.T01:intron 35.0%
AAACAAGATTGACAAGGCAG+GGG - Chr5:8902025-8902044 MsG0580024727.01.T01:five_prime_UTR 40.0%
AAAGGGATACCACTCAATGA+TGG + Chr5:8901993-8902012 None:intergenic 40.0%
AAAGTGATCCACTTAGCACA+GGG + Chr5:8897775-8897794 None:intergenic 40.0%
AAGTCTGCCAAGTGTTAATC+CGG + Chr5:8898633-8898652 None:intergenic 40.0%
AAGTTCAAGACAACCAACTG+AGG + Chr5:8898412-8898431 None:intergenic 40.0%
AATCAGATCAGACCAAAACC+TGG + Chr5:8900216-8900235 None:intergenic 40.0%
ACAAAGACAACGCTCAAAGA+AGG + Chr5:8901550-8901569 None:intergenic 40.0%
ACAGGGTTAATGTTAGTGAC+AGG - Chr5:8900267-8900286 MsG0580024727.01.T01:CDS 40.0%
ACCACATAAACCACCTTGAA+TGG + Chr5:8899743-8899762 None:intergenic 40.0%
ACCATTCAAGGTGGTTTATG+TGG - Chr5:8899739-8899758 MsG0580024727.01.T01:CDS 40.0%
ACGATAAATAGGAATCAGGG+AGG - Chr5:8898323-8898342 MsG0580024727.01.T01:intron 40.0%
ACGATATGATACCATACTGG+TGG - Chr5:8899359-8899378 MsG0580024727.01.T01:intron 40.0%
AGAATATCTACACCGAAACC+TGG + Chr5:8900247-8900266 None:intergenic 40.0%
AGCATCAACAACATAACTGC+AGG + Chr5:8901913-8901932 None:intergenic 40.0%
AGGACTGTTGAATCAGACAT+TGG - Chr5:8899607-8899626 MsG0580024727.01.T01:intron 40.0%
AGTCAACCAATCAGTGATAC+TGG + Chr5:8898967-8898986 None:intergenic 40.0%
AGTTCAAGACAACCAACTGA+GGG + Chr5:8898411-8898430 None:intergenic 40.0%
ATTTCACTTCAGAGCAGCAA+AGG - Chr5:8899645-8899664 MsG0580024727.01.T01:intron 40.0%
CAGGACTTAGGATGATTAGA+AGG - Chr5:8898258-8898277 MsG0580024727.01.T01:intron 40.0%
CATAACACCGGATTAACACT+TGG - Chr5:8898623-8898642 MsG0580024727.01.T01:intron 40.0%
CCAACGATATGATACCATAC+TGG - Chr5:8899356-8899375 MsG0580024727.01.T01:intron 40.0%
CCAGTATGGTATCATATCGT+TGG + Chr5:8899359-8899378 None:intergenic 40.0%
CCATTGTGTATACAAGGGAT+AGG - Chr5:8899917-8899936 MsG0580024727.01.T01:intron 40.0%
CCTATCCCTTGTATACACAA+TGG + Chr5:8899920-8899939 None:intergenic 40.0%
CGTGAAGCATAACTTACTGT+AGG + Chr5:8898049-8898068 None:intergenic 40.0%
CTACAAATGGTTGGCACATT+TGG - Chr5:8899167-8899186 MsG0580024727.01.T01:intron 40.0%
CTCCTATTTGGAAAGAGTTG+TGG - Chr5:8899432-8899451 MsG0580024727.01.T01:CDS 40.0%
GAAACAAGATTGACAAGGCA+GGG - Chr5:8902024-8902043 MsG0580024727.01.T01:five_prime_UTR 40.0%
GCACTTGGAAGAGCTTATTT+AGG + Chr5:8897606-8897625 None:intergenic 40.0%
GCATATACCAATGCTCCTAT+GGG + Chr5:8901118-8901137 None:intergenic 40.0%
GCCGAGGGAGTAATAAAAAT+TGG + Chr5:8898488-8898507 None:intergenic 40.0%
GGACTTCATTAAGGTTGTTG+AGG - Chr5:8899332-8899351 MsG0580024727.01.T01:intron 40.0%
GTAGGATTCGAGAACAGAAA+CGG - Chr5:8900671-8900690 MsG0580024727.01.T01:intron 40.0%
GTTCTTATCTGATTGCAGGT+GGG - Chr5:8900910-8900929 MsG0580024727.01.T01:intron 40.0%
GTTGGGAAACAAGATTGACA+AGG - Chr5:8902019-8902038 MsG0580024727.01.T01:five_prime_UTR 40.0%
TATTGTGGTAGTCAGGACTT+AGG - Chr5:8898246-8898265 MsG0580024727.01.T01:intron 40.0%
TCAATCTACCACCTTGTTAG+AGG + Chr5:8898891-8898910 None:intergenic 40.0%
TCATGAGCATGAGCAAATTC+TGG - Chr5:8899531-8899550 MsG0580024727.01.T01:intron 40.0%
TCCCCTACTCATTAGTATAG+CGG + Chr5:8899060-8899079 None:intergenic 40.0%
TCCGCTATACTAATGAGTAG+GGG - Chr5:8899056-8899075 MsG0580024727.01.T01:intron 40.0%
TGCCACAACTCTTTCCAAAT+AGG + Chr5:8899437-8899456 None:intergenic 40.0%
TGGTATCCCTTTATTGGTGT+TGG - Chr5:8902001-8902020 MsG0580024727.01.T01:five_prime_UTR 40.0%
TGTTCTTATCTGATTGCAGG+TGG - Chr5:8900909-8900928 MsG0580024727.01.T01:intron 40.0%
TTTATCTGAGGAAGGTCTTG+GGG - Chr5:8900074-8900093 MsG0580024727.01.T01:intron 40.0%
TTTCACTTCAGAGCAGCAAA+GGG - Chr5:8899646-8899665 MsG0580024727.01.T01:intron 40.0%
TTTGATACAGATGGGAGGAA+CGG - Chr5:8900367-8900386 MsG0580024727.01.T01:intron 40.0%
! AACACTTGGCAGACTTTTGA+TGG - Chr5:8898637-8898656 MsG0580024727.01.T01:intron 40.0%
! ATGATGTTATGGGCCTTATC+AGG - Chr5:8899975-8899994 MsG0580024727.01.T01:intron 40.0%
! CTGTTAGGGTATCAGCAAAT+GGG - Chr5:8898114-8898133 MsG0580024727.01.T01:CDS 40.0%
! GAGAAGTAAGAGTAGTGGAA+AGG - Chr5:8898175-8898194 MsG0580024727.01.T01:intron 40.0%
! GGTATCCCTTTATTGGTGTT+GGG - Chr5:8902002-8902021 MsG0580024727.01.T01:five_prime_UTR 40.0%
! GTCATCCAGAGTTTTTCTCA+AGG + Chr5:8899011-8899030 None:intergenic 40.0%
! TATCACTGATTGGTTGACTG+AGG - Chr5:8898968-8898987 MsG0580024727.01.T01:intron 40.0%
! TCTGTTAGGGTATCAGCAAA+TGG - Chr5:8898113-8898132 MsG0580024727.01.T01:CDS 40.0%
! TCTTTGAGCGTTGTCTTTGT+CGG - Chr5:8901550-8901569 MsG0580024727.01.T01:intron 40.0%
! TGTTAGGGTATCAGCAAATG+GGG - Chr5:8898115-8898134 MsG0580024727.01.T01:CDS 40.0%
!! ATTAGCAGTGTCGACGTATT+AGG - Chr5:8897366-8897385 MsG0580024727.01.T01:intron 40.0%
!! TTAGCAGTGTCGACGTATTA+GGG - Chr5:8897367-8897386 MsG0580024727.01.T01:intron 40.0%
!!! GGAAAAAATTGGGCTGGTTT+TGG - Chr5:8898715-8898734 MsG0580024727.01.T01:intron 40.0%
AAACCTGCTAGCATCCAAGA+AGG - Chr5:8899887-8899906 MsG0580024727.01.T01:intron 45.0%
AAATGGGGCAGTAGTAAGGA+GGG - Chr5:8898130-8898149 MsG0580024727.01.T01:intron 45.0%
AACCACTAATTGTGAAGCCG+AGG + Chr5:8898504-8898523 None:intergenic 45.0%
AACGTTCCTGCTGTGTAACA+AGG - Chr5:8898378-8898397 MsG0580024727.01.T01:intron 45.0%
AACTCTGGATGACTTCCAGA+AGG - Chr5:8899018-8899037 MsG0580024727.01.T01:intron 45.0%
ACAATGGACAATGGCCTTCT+TGG + Chr5:8899904-8899923 None:intergenic 45.0%
ACCACTAATTGTGAAGCCGA+GGG + Chr5:8898503-8898522 None:intergenic 45.0%
ACGTTCCTGCTGTGTAACAA+GGG - Chr5:8898379-8898398 MsG0580024727.01.T01:intron 45.0%
AGCAGGTTGTACACCATTCA+AGG - Chr5:8899727-8899746 MsG0580024727.01.T01:CDS 45.0%
AGGAATCAGGGAGGACAAAA+AGG - Chr5:8898332-8898351 MsG0580024727.01.T01:intron 45.0%
AGGTGAATTTGATGCTGCTC+AGG + Chr5:8900042-8900061 None:intergenic 45.0%
AGGTGCATACAAGAAGGTAG+AGG - Chr5:8900323-8900342 MsG0580024727.01.T01:intron 45.0%
AGGTTGTACACCATTCAAGG+TGG - Chr5:8899730-8899749 MsG0580024727.01.T01:CDS 45.0%
AGTAACGTTCCCACATGCTA+CGG + Chr5:8901008-8901027 None:intergenic 45.0%
ATACCATACTGGTGGTTGAC+TGG - Chr5:8899367-8899386 MsG0580024727.01.T01:intron 45.0%
ATGCAACCACAAACTTCTGC+AGG + Chr5:8899772-8899791 None:intergenic 45.0%
ATTGCTCACCTCTAACAAGG+TGG - Chr5:8898880-8898899 MsG0580024727.01.T01:intron 45.0%
ATTGGTTGACTGAGGAGTTC+AGG - Chr5:8898976-8898995 MsG0580024727.01.T01:intron 45.0%
CCATCTCCTGCTTGAAGAAA+AGG + Chr5:8897846-8897865 None:intergenic 45.0%
CGACGTATTAGGGTGAGTTT+GGG - Chr5:8897377-8897396 MsG0580024727.01.T01:intron 45.0%
CGCATATACCAATGCTCCTA+TGG + Chr5:8901119-8901138 None:intergenic 45.0%
CTTATAGGGCTTCAGAATGC+TGG - Chr5:8897874-8897893 MsG0580024727.01.T01:intron 45.0%
GAAACCATCGGCAACTCTTA+AGG - Chr5:8898749-8898768 MsG0580024727.01.T01:intron 45.0%
GAAAGTGATCCACTTAGCAC+AGG + Chr5:8897776-8897795 None:intergenic 45.0%
GAAGACACTGGATAACATGG+AGG - Chr5:8898539-8898558 MsG0580024727.01.T01:intron 45.0%
GATTTCCCTTGTTACACAGC+AGG + Chr5:8898387-8898406 None:intergenic 45.0%
GCAGCTTATGGCACATTAGA+AGG - Chr5:8898694-8898713 MsG0580024727.01.T01:intron 45.0%
GCTGAAGACACTGGATAACA+TGG - Chr5:8898536-8898555 MsG0580024727.01.T01:intron 45.0%
GGAAACAAGATTGACAAGGC+AGG - Chr5:8902023-8902042 MsG0580024727.01.T01:five_prime_UTR 45.0%
GGAATCAGGGAGGACAAAAA+GGG - Chr5:8898333-8898352 MsG0580024727.01.T01:intron 45.0%
GGAATTGCTCACCTCTAACA+AGG - Chr5:8898877-8898896 MsG0580024727.01.T01:intron 45.0%
GTAAGGAGGGAAGGATTTGA+AGG - Chr5:8898143-8898162 MsG0580024727.01.T01:intron 45.0%
TACAAGAAGGTAGAGGTTGC+TGG - Chr5:8900330-8900349 MsG0580024727.01.T01:intron 45.0%
TAGGGGAACTTGCACTACAA+GGG - Chr5:8899073-8899092 MsG0580024727.01.T01:intron 45.0%
TATTGCCTAGCAATCGACTG+AGG - Chr5:8901242-8901261 MsG0580024727.01.T01:intron 45.0%
TCGACGTATTAGGGTGAGTT+TGG - Chr5:8897376-8897395 MsG0580024727.01.T01:intron 45.0%
TCTAAGAGGCAGAGAATCCT+TGG + Chr5:8901768-8901787 None:intergenic 45.0%
TGAAAATTGGGATGCTGCCA+AGG - Chr5:8901748-8901767 MsG0580024727.01.T01:intron 45.0%
TGATGGAGTATGACGACCAA+CGG - Chr5:8898654-8898673 MsG0580024727.01.T01:intron 45.0%
TGCAGGTGGGATTCAATATG+AGG - Chr5:8900923-8900942 MsG0580024727.01.T01:intron 45.0%
TGTGTGTGTGTGTTTCCCAT+AGG - Chr5:8901100-8901119 MsG0580024727.01.T01:intron 45.0%
TTAGCACAGGGCATGCATAT+AGG + Chr5:8897763-8897782 None:intergenic 45.0%
TTATCCAGTGTCTTCAGCTC+AGG + Chr5:8898534-8898553 None:intergenic 45.0%
TTTGGGAATCCAAGCACAAG+AGG + Chr5:8899116-8899135 None:intergenic 45.0%
! CAATCACGGACTGCAGAAAA+TGG + Chr5:8900542-8900561 None:intergenic 45.0%
! CCTTTTCTTCAAGCAGGAGA+TGG - Chr5:8897843-8897862 MsG0580024727.01.T01:intron 45.0%
! CTTTGAGCGTTGTCTTTGTC+GGG - Chr5:8901551-8901570 MsG0580024727.01.T01:intron 45.0%
! CTTTTCTGAACTGGTTACGC+AGG - Chr5:8897173-8897192 MsG0580024727.01.T01:intron 45.0%
! GATGGATCAATTGCCACTTG+AGG - Chr5:8898771-8898790 MsG0580024727.01.T01:intron 45.0%
! GCAATGGTGAAGCTAGGTTT+TGG - Chr5:8898844-8898863 MsG0580024727.01.T01:intron 45.0%
! GTGGTTGACTGGTTGTTTAC+AGG - Chr5:8899378-8899397 MsG0580024727.01.T01:intron 45.0%
! TCAATTGCCACTTGAGGACA+AGG - Chr5:8898777-8898796 MsG0580024727.01.T01:intron 45.0%
! TGTGGGAAGCTTTTCTGAAC+TGG - Chr5:8897164-8897183 MsG0580024727.01.T01:intron 45.0%
! TGTGTTTCCCATAGGAGCAT+TGG - Chr5:8901108-8901127 MsG0580024727.01.T01:intron 45.0%
! TTGCAGCCTTTTCTTCAAGC+AGG - Chr5:8897837-8897856 MsG0580024727.01.T01:intron 45.0%
! TTTATCCCTAAGGGTGCACT+TGG + Chr5:8897621-8897640 None:intergenic 45.0%
! TTTTCCTGAGCTGAAGACAC+TGG - Chr5:8898527-8898546 MsG0580024727.01.T01:intron 45.0%
!! ACATTTGGTGCAGTGGTTAG+GGG - Chr5:8899182-8899201 MsG0580024727.01.T01:intron 45.0%
!! AGGGTACAGTTCTAAGTGAC+AGG - Chr5:8898288-8898307 MsG0580024727.01.T01:intron 45.0%
!! CACATTTGGTGCAGTGGTTA+GGG - Chr5:8899181-8899200 MsG0580024727.01.T01:intron 45.0%
AACCTAGGTTCCGTAGCATG+TGG - Chr5:8900995-8901014 MsG0580024727.01.T01:CDS 50.0%
AATGGTCAGGGATCTCTGAG+CGG - Chr5:8898822-8898841 MsG0580024727.01.T01:intron 50.0%
ACAGACACTCTGCCCAAGTA+AGG + Chr5:8899685-8899704 None:intergenic 50.0%
ACCTAGGTTCCGTAGCATGT+GGG - Chr5:8900996-8901015 MsG0580024727.01.T01:CDS 50.0%
ACCTGCTGTCCCGTGAAAAT+TGG + Chr5:8899714-8899733 None:intergenic 50.0%
AGAAGGTAGAGGTTGCTGGA+AGG - Chr5:8900334-8900353 MsG0580024727.01.T01:intron 50.0%
AGCCAATGCAGTGCAGAATG+TGG + Chr5:8900147-8900166 None:intergenic 50.0%
CAAATGGGGCAGTAGTAAGG+AGG - Chr5:8898129-8898148 MsG0580024727.01.T01:CDS 50.0%
CAACCAGTCAACCACCAGTA+TGG + Chr5:8899373-8899392 None:intergenic 50.0%
CAAGGGAAATCTCCCTCAGT+TGG - Chr5:8898396-8898415 MsG0580024727.01.T01:intron 50.0%
CAAGGGATAGGACATACGAG+TGG - Chr5:8899929-8899948 MsG0580024727.01.T01:intron 50.0%
CACCACATTCTGCACTGCAT+TGG - Chr5:8900142-8900161 MsG0580024727.01.T01:intron 50.0%
CAGCAAATGGGGCAGTAGTA+AGG - Chr5:8898126-8898145 MsG0580024727.01.T01:CDS 50.0%
CCATCCTTAAGAGTTGCCGA+TGG + Chr5:8898756-8898775 None:intergenic 50.0%
CCATCGGCAACTCTTAAGGA+TGG - Chr5:8898753-8898772 MsG0580024727.01.T01:intron 50.0%
CTCTTCCAAGTGCACCCTTA+GGG - Chr5:8897613-8897632 MsG0580024727.01.T01:intron 50.0%
CTGAGCAAGCCATCATTGAG+TGG - Chr5:8901981-8902000 MsG0580024727.01.T01:five_prime_UTR 50.0%
CTTGCACTACAAGGGTAGGA+TGG - Chr5:8899081-8899100 MsG0580024727.01.T01:intron 50.0%
GAAAGTAGTCAGTGTCGCAG+AGG - Chr5:8898590-8898609 MsG0580024727.01.T01:intron 50.0%
GAGCATGAGCAAATTCTGGC+AGG - Chr5:8899535-8899554 MsG0580024727.01.T01:intron 50.0%
GCTGAGTAAAGAGCCTTTCC+TGG - Chr5:8901444-8901463 MsG0580024727.01.T01:intron 50.0%
GGAAAGGCTCTTTACTCAGC+AGG + Chr5:8901444-8901463 None:intergenic 50.0%
GGAACTTGCACTACAAGGGT+AGG - Chr5:8899077-8899096 MsG0580024727.01.T01:intron 50.0%
GGTGGCTAACAGCATAACAC+CGG - Chr5:8898611-8898630 MsG0580024727.01.T01:intron 50.0%
GTAGGGGAACTTGCACTACA+AGG - Chr5:8899072-8899091 MsG0580024727.01.T01:intron 50.0%
TATGCATGCCCTGTGCTAAG+TGG - Chr5:8897764-8897783 MsG0580024727.01.T01:intron 50.0%
TCCCTCGGCTTCACAATTAG+TGG - Chr5:8898499-8898518 MsG0580024727.01.T01:intron 50.0%
TGCACACCTGCAGAAGTTTG+TGG - Chr5:8899763-8899782 MsG0580024727.01.T01:CDS 50.0%
TGCTAACAGCCTCTTGTGCT+TGG - Chr5:8899104-8899123 MsG0580024727.01.T01:intron 50.0%
TGCTAGCAGGTTTCGTATGC+TGG + Chr5:8899880-8899899 None:intergenic 50.0%
TTGAGGACAAGGATGGCAGA+TGG - Chr5:8898788-8898807 MsG0580024727.01.T01:intron 50.0%
! ACCAATTTTCACGGGACAGC+AGG - Chr5:8899710-8899729 MsG0580024727.01.T01:CDS 50.0%
! ATTGACTCTGATGAGCAGGC+AGG - Chr5:8899587-8899606 MsG0580024727.01.T01:intron 50.0%
! TCACGGACTGCAGAAAATGG+TGG + Chr5:8900539-8900558 None:intergenic 50.0%
! TTGCCACTTGAGGACAAGGA+TGG - Chr5:8898781-8898800 MsG0580024727.01.T01:intron 50.0%
!! CAGAAGGGGGAAGGTTTTGA+AGG - Chr5:8900303-8900322 MsG0580024727.01.T01:intron 50.0%
!! CTGCATTGACTCTGATGAGC+AGG - Chr5:8899583-8899602 MsG0580024727.01.T01:intron 50.0%
!! GCACATTTGGTGCAGTGGTT+AGG - Chr5:8899180-8899199 MsG0580024727.01.T01:intron 50.0%
AGCGTTGTCTTTGTCGGGCA+AGG - Chr5:8901556-8901575 MsG0580024727.01.T01:intron 55.0%
AGGACAAGGATGGCAGATGG+AGG - Chr5:8898791-8898810 MsG0580024727.01.T01:intron 55.0%
AGGCAGTAGCAGCAGTCAGA+AGG - Chr5:8900287-8900306 MsG0580024727.01.T01:intron 55.0%
AGTAGTCAGTGTCGCAGAGG+TGG - Chr5:8898593-8898612 MsG0580024727.01.T01:intron 55.0%
ATAACACTGCTCCCACCTCC+TGG + Chr5:8900102-8900121 None:intergenic 55.0%
CACCACCTCAGTCGATTGCT+AGG + Chr5:8901250-8901269 None:intergenic 55.0%
CAGATGGAGGGGAATGGGAA+TGG - Chr5:8898804-8898823 MsG0580024727.01.T01:intron 55.0%
CAGTAGCAGCAGTCAGAAGG+GGG - Chr5:8900290-8900309 MsG0580024727.01.T01:intron 55.0%
CATGTCCTCGCTGTATCCAC+CGG + Chr5:8898023-8898042 None:intergenic 55.0%
CTGCCATCCTTGTCCTCAAG+TGG + Chr5:8898787-8898806 None:intergenic 55.0%
GACAAGGATGGCAGATGGAG+GGG - Chr5:8898793-8898812 MsG0580024727.01.T01:intron 55.0%
GAGGGGAATGGGAATGGTCA+GGG - Chr5:8898810-8898829 MsG0580024727.01.T01:intron 55.0%
GATGGCAGATGGAGGGGAAT+GGG - Chr5:8898799-8898818 MsG0580024727.01.T01:intron 55.0%
GCAGGTTTCGTATGCTGGTC+TGG + Chr5:8899875-8899894 None:intergenic 55.0%
GCAGTAGCAGCAGTCAGAAG+GGG - Chr5:8900289-8900308 MsG0580024727.01.T01:intron 55.0%
GCTCTTCCAAGTGCACCCTT+AGG - Chr5:8897612-8897631 MsG0580024727.01.T01:intron 55.0%
GGAAGAGGTAGCAAGCTTGC+AGG + Chr5:8899279-8899298 None:intergenic 55.0%
GGACAAGGATGGCAGATGGA+GGG - Chr5:8898792-8898811 MsG0580024727.01.T01:intron 55.0%
GGATAGGACATACGAGTGGC+AGG - Chr5:8899933-8899952 MsG0580024727.01.T01:intron 55.0%
GGCAGTAGCAGCAGTCAGAA+GGG - Chr5:8900288-8900307 MsG0580024727.01.T01:intron 55.0%
GTGCAGTGGTTAGGGGTGAA+AGG - Chr5:8899189-8899208 MsG0580024727.01.T01:intron 55.0%
GTGGGAACGTTACTGTCGTG+CGG - Chr5:8901014-8901033 MsG0580024727.01.T01:CDS 55.0%
TCCCACATGCTACGGAACCT+AGG + Chr5:8901000-8901019 None:intergenic 55.0%
TGAGCGGCAATGGTGAAGCT+AGG - Chr5:8898838-8898857 MsG0580024727.01.T01:intron 55.0%
TGCCTAGCAATCGACTGAGG+TGG - Chr5:8901245-8901264 MsG0580024727.01.T01:intron 55.0%
TGGCCTTCTTGGATGCTAGC+AGG + Chr5:8899893-8899912 None:intergenic 55.0%
TTAGACCGGTGGATACAGCG+AGG - Chr5:8898015-8898034 MsG0580024727.01.T01:CDS 55.0%
!! GGTTGGCACATTTGGTGCAG+TGG - Chr5:8899175-8899194 MsG0580024727.01.T01:intron 55.0%
AGCAGCAGTCAGAAGGGGGA+AGG - Chr5:8900294-8900313 MsG0580024727.01.T01:intron 60.0%
CAGGGATCTCTGAGCGGCAA+TGG - Chr5:8898828-8898847 MsG0580024727.01.T01:intron 60.0%
GGAGGGGAATGGGAATGGTC+AGG - Chr5:8898809-8898828 MsG0580024727.01.T01:intron 60.0%
GGATGGCAGATGGAGGGGAA+TGG - Chr5:8898798-8898817 MsG0580024727.01.T01:intron 60.0%
GGGGCAGTAGTAAGGAGGGA+AGG - Chr5:8898134-8898153 MsG0580024727.01.T01:intron 60.0%
! GAAGGTCTTGGGGCACCAGG+AGG - Chr5:8900084-8900103 MsG0580024727.01.T01:intron 65.0%
! GAGGAAGGTCTTGGGGCACC+AGG - Chr5:8900081-8900100 MsG0580024727.01.T01:intron 65.0%
! GTCTTGGGGCACCAGGAGGT+GGG - Chr5:8900088-8900107 MsG0580024727.01.T01:intron 65.0%
! GGTCTTGGGGCACCAGGAGG+TGG - Chr5:8900087-8900106 MsG0580024727.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 8896994 8902082 8896994 ID=MsG0580024727.01;Name=MsG0580024727.01
Chr5 mRNA 8896994 8902082 8896994 ID=MsG0580024727.01.T01;Parent=MsG0580024727.01;Name=MsG0580024727.01.T01;_AED=0.41;_eAED=0.41;_QI=163|0.28|0.25|1|0.71|0.62|8|0|277
Chr5 exon 8896994 8897159 8896994 ID=MsG0580024727.01.T01:exon:2851;Parent=MsG0580024727.01.T01
Chr5 exon 8897982 8898148 8897982 ID=MsG0580024727.01.T01:exon:2850;Parent=MsG0580024727.01.T01
Chr5 exon 8899409 8899497 8899409 ID=MsG0580024727.01.T01:exon:2849;Parent=MsG0580024727.01.T01
Chr5 exon 8899677 8899824 8899677 ID=MsG0580024727.01.T01:exon:2848;Parent=MsG0580024727.01.T01
Chr5 exon 8900251 8900305 8900251 ID=MsG0580024727.01.T01:exon:2847;Parent=MsG0580024727.01.T01
Chr5 exon 8900969 8901057 8900969 ID=MsG0580024727.01.T01:exon:2846;Parent=MsG0580024727.01.T01
Chr5 exon 8901152 8901233 8901152 ID=MsG0580024727.01.T01:exon:2845;Parent=MsG0580024727.01.T01
Chr5 exon 8901882 8902082 8901882 ID=MsG0580024727.01.T01:exon:2844;Parent=MsG0580024727.01.T01
Chr5 five_prime_UTR 8901920 8902082 8901920 ID=MsG0580024727.01.T01:five_prime_utr;Parent=MsG0580024727.01.T01
Chr5 CDS 8901882 8901919 8901882 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8901152 8901233 8901152 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8900969 8901057 8900969 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8900251 8900305 8900251 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8899677 8899824 8899677 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8899409 8899497 8899409 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8897982 8898148 8897982 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Chr5 CDS 8896994 8897159 8896994 ID=MsG0580024727.01.T01:cds;Parent=MsG0580024727.01.T01
Gene Sequence

>MsG0580024727.01.T01

ATGGGATTGTGGGAAGCTTTTCTGAACTGGTTACGCAGCCTTTTCTTCAAGCAGGAGATGGAGTTATCTCTTATAGGGCTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACCGGTGGATACAGCGAGGACATGATTCCTACAGTAAGTTATGCTTCACGAAATGCTTTTAGTTATTGCTTCCTATTCTATTTGTTTGTGATGGATCAATTGCCACTTGAGGACAAGGATGGCAGATGGAGGGGAATGGGAATGTGCATTAAGTATAAAGATGCGTCTCCTGCAAGCTTGCTACCTCTTCCTATTCCTAAAGCTATTTGCAAAGATCTCAGTTTGGACTTCATTAAGGTTGTTGAGGTCCAACGATATGATACCATACTGGTGGTTGACTGGTTGTTTACAGGGAACTGCATTGACTCTGATGAGCAGGCAGGACTGTTGAATCAGACATTGGAGACACATTTGCTATATTTCACTTCAGAGCAGCAAAGGGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATAAAGTTATGGGATCTTGGGGGGCAACCTAGGTTCCGTAGCATGTGGGAACGTTACTGTCGTGCGGTTTCCGCTATTGTGTATGAAACAGACTTCTTATCTTCTGGCTTTAAAGATGTCTGTCTTTATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAGCCATCATTGAGTGGTATCCCTTTATTGGTGTTGGGAAACAAGATTGACAAGGCAGGGGCTCTGTCTAAACAAGCTTTGACCGACCAAATGTAA

Protein sequence

>MsG0580024727.01.T01

MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVSYASRNAFSYCFLFYLFVMDQLPLEDKDGRWRGMGMCIKYKDASPASLLPLPIPKAICKDLSLDFIKVVEVQRYDTILVVDWLFTGNCIDSDEQAGLLNQTLETHLLYFTSEQQRVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYETDFLSSGFKDVCLYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSKQALTDQM*