Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045130.01.T01 | XP_003599784.3 | 73.684 | 323 | 85 | 0 | 7 | 329 | 14 | 336 | 6.71E-177 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045130.01.T01 | Q9M1V2 | 53.312 | 317 | 145 | 3 | 14 | 329 | 9 | 323 | 2.95E-112 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000148.01 | MsG0880045130.01 | 0.801432 | 9.029409e-49 | 4.311475e-46 |
| MsG0180000466.01 | MsG0880045130.01 | 0.831510 | 1.602292e-55 | 1.742562e-52 |
| MsG0180001029.01 | MsG0880045130.01 | 0.804429 | 2.169239e-49 | 1.118179e-46 |
| MsG0180002404.01 | MsG0880045130.01 | 0.802052 | 6.736044e-49 | 3.267366e-46 |
| MsG0880044712.01 | MsG0880045130.01 | 0.806443 | 8.207458e-50 | 4.455320e-47 |
| MsG0880045128.01 | MsG0880045130.01 | 0.895994 | 5.644683e-76 | 5.988002e-72 |
| MsG0880045130.01 | MsG0880045725.01 | 0.818818 | 1.607612e-52 | 1.215995e-49 |
| MsG0180003320.01 | MsG0880045130.01 | 0.815408 | 9.387223e-52 | 6.466671e-49 |
| MsG0780040716.01 | MsG0880045130.01 | 0.824875 | 6.369000e-54 | 5.713198e-51 |
| MsG0780040847.01 | MsG0880045130.01 | 0.801640 | 8.183962e-49 | 3.928278e-46 |
| MsG0880043550.01 | MsG0880045130.01 | 0.817333 | 3.481474e-52 | 2.528089e-49 |
| MsG0280011128.01 | MsG0880045130.01 | 0.801962 | 7.029968e-49 | 3.401977e-46 |
| MsG0680034238.01 | MsG0880045130.01 | 0.807259 | 5.515956e-50 | 3.058091e-47 |
| MsG0480019171.01 | MsG0880045130.01 | 0.832608 | 8.577863e-56 | 9.636447e-53 |
| MsG0480019663.01 | MsG0880045130.01 | 0.800359 | 1.495816e-48 | 6.951116e-46 |
| MsG0480020810.01 | MsG0880045130.01 | 0.800844 | 1.190830e-48 | 5.602422e-46 |
| MsG0480020904.01 | MsG0880045130.01 | 0.820387 | 7.047400e-53 | 5.568739e-50 |
| MsG0580024980.01 | MsG0880045130.01 | 0.832942 | 7.088516e-56 | 8.042887e-53 |
| MsG0380016490.01 | MsG0880045130.01 | 0.829848 | 4.091064e-55 | 4.238246e-52 |
| MsG0380017030.01 | MsG0880045130.01 | 0.803322 | 3.684930e-49 | 1.846177e-46 |
| MsG0380017901.01 | MsG0880045130.01 | 0.823821 | 1.126515e-53 | 9.806041e-51 |
| MsG0480018362.01 | MsG0880045130.01 | 0.822479 | 2.317840e-53 | 1.942340e-50 |
| MsG0580026521.01 | MsG0880045130.01 | 0.829925 | 3.918854e-55 | 4.068192e-52 |
| MsG0580028041.01 | MsG0880045130.01 | 0.815188 | 1.050550e-51 | 7.193151e-49 |
| MsG0580030141.01 | MsG0880045130.01 | 0.802917 | 4.468654e-49 | 2.215859e-46 |
| MsG0680030296.01 | MsG0880045130.01 | 0.811789 | 5.872950e-51 | 3.669191e-48 |
| MsG0680030613.01 | MsG0880045130.01 | 0.800155 | 1.645746e-48 | 7.607918e-46 |
| MsG0280006579.01 | MsG0880045130.01 | 0.815265 | 1.010105e-51 | 6.931090e-49 |
| MsG0280007505.01 | MsG0880045130.01 | 0.812337 | 4.459663e-51 | 2.828023e-48 |
| MsG0280009753.01 | MsG0880045130.01 | 0.801091 | 1.060229e-48 | 5.019511e-46 |
| MsG0780035930.01 | MsG0880045130.01 | 0.810028 | 1.412969e-50 | 8.426569e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880045130.01 | MsG0580026320.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045130.01.T01 | MTR_0071s0010 | 73.684 | 323 | 85 | 0 | 7 | 329 | 11 | 333 | 1.12e-180 | 503 |
| MsG0880045130.01.T01 | MTR_3g046670 | 73.684 | 323 | 85 | 0 | 7 | 329 | 11 | 333 | 1.12e-180 | 503 |
| MsG0880045130.01.T01 | MTR_3g435130 | 70.642 | 327 | 96 | 0 | 3 | 329 | 8 | 334 | 1.59e-175 | 489 |
| MsG0880045130.01.T01 | MTR_8g066220 | 68.807 | 327 | 101 | 1 | 3 | 329 | 8 | 333 | 7.60e-166 | 465 |
| MsG0880045130.01.T01 | MTR_8g066210 | 67.278 | 327 | 91 | 2 | 3 | 329 | 8 | 318 | 4.64e-160 | 450 |
| MsG0880045130.01.T01 | MTR_3g013500 | 52.351 | 319 | 151 | 1 | 11 | 329 | 20 | 337 | 1.02e-122 | 356 |
| MsG0880045130.01.T01 | MTR_7g007710 | 50.311 | 322 | 148 | 4 | 15 | 329 | 16 | 332 | 2.57e-113 | 332 |
| MsG0880045130.01.T01 | MTR_8g040820 | 46.708 | 319 | 165 | 4 | 15 | 329 | 27 | 344 | 4.76e-106 | 314 |
| MsG0880045130.01.T01 | MTR_7g007680 | 47.170 | 318 | 159 | 4 | 15 | 329 | 22 | 333 | 8.01e-106 | 314 |
| MsG0880045130.01.T01 | MTR_8g035720 | 45.897 | 329 | 174 | 2 | 5 | 329 | 78 | 406 | 9.22e-106 | 315 |
| MsG0880045130.01.T01 | MTR_8g040490 | 46.273 | 322 | 169 | 3 | 11 | 329 | 23 | 343 | 3.00e-102 | 306 |
| MsG0880045130.01.T01 | MTR_8g040430 | 45.566 | 327 | 172 | 5 | 8 | 329 | 20 | 345 | 1.99e-101 | 302 |
| MsG0880045130.01.T01 | MTR_8g066280 | 72.872 | 188 | 51 | 0 | 142 | 329 | 22 | 209 | 4.69e-97 | 286 |
| MsG0880045130.01.T01 | MTR_8g041790 | 45.768 | 319 | 149 | 6 | 16 | 329 | 26 | 325 | 1.34e-96 | 289 |
| MsG0880045130.01.T01 | MTR_8g040520 | 47.619 | 315 | 157 | 4 | 11 | 321 | 23 | 333 | 8.92e-94 | 283 |
| MsG0880045130.01.T01 | MTR_3g434790 | 68.508 | 181 | 57 | 0 | 149 | 329 | 54 | 234 | 7.86e-88 | 263 |
| MsG0880045130.01.T01 | MTR_3g434790 | 65.306 | 49 | 17 | 0 | 3 | 51 | 9 | 57 | 8.90e-14 | 70.1 |
| MsG0880045130.01.T01 | MTR_8g040250 | 42.222 | 315 | 142 | 6 | 19 | 329 | 15 | 293 | 1.50e-80 | 247 |
| MsG0880045130.01.T01 | MTR_8g014380 | 43.051 | 295 | 127 | 5 | 15 | 307 | 26 | 281 | 3.45e-76 | 235 |
| MsG0880045130.01.T01 | MTR_8g040820 | 46.119 | 219 | 114 | 3 | 115 | 329 | 27 | 245 | 6.85e-70 | 218 |
| MsG0880045130.01.T01 | MTR_8g040430 | 46.575 | 219 | 113 | 3 | 115 | 329 | 27 | 245 | 9.15e-68 | 213 |
| MsG0880045130.01.T01 | MTR_8g040730 | 50.000 | 182 | 82 | 5 | 73 | 249 | 39 | 216 | 6.36e-45 | 161 |
| MsG0880045130.01.T01 | MTR_8g040730 | 45.882 | 170 | 86 | 3 | 17 | 184 | 343 | 508 | 6.27e-39 | 144 |
| MsG0880045130.01.T01 | MTR_8g040710 | 49.324 | 148 | 73 | 1 | 174 | 319 | 135 | 282 | 5.68e-44 | 152 |
| MsG0880045130.01.T01 | MTR_8g066190 | 58.716 | 109 | 27 | 1 | 221 | 329 | 2 | 92 | 7.01e-34 | 120 |
| MsG0880045130.01.T01 | MTR_8g040315 | 42.520 | 127 | 72 | 1 | 203 | 329 | 7 | 132 | 7.36e-27 | 103 |
| MsG0880045130.01.T01 | MTR_8g040410 | 35.955 | 89 | 39 | 1 | 213 | 301 | 75 | 145 | 1.57e-13 | 67.4 |
| MsG0880045130.01.T01 | MTR_8g040410 | 49.153 | 59 | 29 | 1 | 62 | 119 | 22 | 80 | 7.96e-13 | 65.5 |
| MsG0880045130.01.T01 | MTR_8g066200 | 52.632 | 57 | 27 | 0 | 126 | 182 | 4 | 60 | 4.66e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045130.01.T01 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 14 | 328 | 2.92e-113 | 332 |
| MsG0880045130.01.T01 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 9 | 323 | 3.00e-113 | 331 |
| MsG0880045130.01.T01 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 41 | 355 | 4.15e-113 | 332 |
| MsG0880045130.01.T01 | AT2G03760 | 50.610 | 328 | 156 | 2 | 2 | 329 | 3 | 324 | 6.38e-112 | 328 |
| MsG0880045130.01.T01 | AT5G07010 | 48.308 | 325 | 166 | 2 | 6 | 329 | 33 | 356 | 1.34e-111 | 328 |
| MsG0880045130.01.T01 | AT5G07000 | 46.273 | 322 | 169 | 3 | 11 | 329 | 24 | 344 | 4.49e-105 | 311 |
| MsG0880045130.01.T01 | AT3G45080 | 51.572 | 318 | 150 | 4 | 14 | 329 | 14 | 329 | 1.61e-104 | 309 |
| MsG0880045130.01.T01 | AT2G03770 | 47.516 | 322 | 156 | 3 | 2 | 321 | 4 | 314 | 2.17e-103 | 306 |
| MsG0880045130.01.T01 | AT1G13420 | 51.935 | 310 | 141 | 4 | 20 | 327 | 26 | 329 | 9.03e-103 | 305 |
| MsG0880045130.01.T01 | AT1G28170 | 51.057 | 331 | 155 | 6 | 1 | 329 | 1 | 326 | 5.09e-100 | 298 |
| MsG0880045130.01.T01 | AT5G43690 | 46.789 | 327 | 169 | 4 | 6 | 329 | 7 | 331 | 2.39e-95 | 286 |
| MsG0880045130.01.T01 | AT4G26280 | 49.363 | 314 | 138 | 3 | 10 | 321 | 7 | 301 | 2.46e-94 | 283 |
| MsG0880045130.01.T01 | AT2G03750 | 46.296 | 324 | 171 | 3 | 6 | 329 | 30 | 350 | 1.81e-93 | 282 |
| MsG0880045130.01.T01 | AT2G14920 | 45.714 | 315 | 163 | 4 | 20 | 329 | 22 | 333 | 9.18e-89 | 269 |
| MsG0880045130.01.T01 | AT1G13430 | 46.505 | 329 | 154 | 5 | 20 | 329 | 26 | 351 | 1.12e-85 | 262 |
| MsG0880045130.01.T01 | AT1G18590 | 43.671 | 316 | 162 | 6 | 20 | 327 | 34 | 341 | 1.77e-85 | 261 |
| MsG0880045130.01.T01 | AT1G74100 | 43.175 | 315 | 165 | 5 | 20 | 327 | 26 | 333 | 4.70e-85 | 260 |
| MsG0880045130.01.T01 | AT2G27570 | 44.062 | 320 | 123 | 4 | 10 | 329 | 10 | 273 | 1.10e-83 | 254 |
| MsG0880045130.01.T01 | AT1G74090 | 43.987 | 316 | 161 | 6 | 20 | 327 | 38 | 345 | 2.98e-79 | 246 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTCTTGTTCCCTTCT+TGG | 0.122818 | 8:+54621091 | MsG0880045130.01.T01:CDS |
| TCATATTCTTCCAAGTATTT+TGG | 0.152482 | 8:-54620786 | None:intergenic |
| TCCACCAATATCAAGGATTT+TGG | 0.206103 | 8:+54620877 | MsG0880045130.01.T01:CDS |
| GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8:-54620985 | None:intergenic |
| GTTGAGTCTTTGATAGATTT+CGG | 0.273652 | 8:-54621209 | None:intergenic |
| AGGATATTGGCAGGAGAGTT+TGG | 0.297515 | 8:+54621400 | MsG0880045130.01.T01:CDS |
| CTCTCGAATGCCTCTTCTAA+TGG | 0.302803 | 8:-54621329 | None:intergenic |
| AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8:-54620984 | None:intergenic |
| AGTGAAACAAAAGTGTCTTT+TGG | 0.331004 | 8:-54621260 | None:intergenic |
| GGGAGCATGTATTAGGATAT+TGG | 0.339272 | 8:+54621387 | MsG0880045130.01.T01:CDS |
| CACTCTTGTGCCAAAATACT+TGG | 0.349067 | 8:+54620776 | MsG0880045130.01.T01:CDS |
| TGAGTCCAATGGGACCCTTT+TGG | 0.353951 | 8:+54621366 | MsG0880045130.01.T01:CDS |
| TATATCACCAACCAAACCTT+TGG | 0.363123 | 8:-54621537 | None:intergenic |
| GTAATCATCCCTTTCTCTAA+TGG | 0.365334 | 8:-54620846 | None:intergenic |
| CAAGTTAAGACCACATAGTT+GGG | 0.387955 | 8:+54621298 | MsG0880045130.01.T01:CDS |
| ACACTATCACCGAAGAGAAA+TGG | 0.398695 | 8:+54621711 | MsG0880045130.01.T01:CDS |
| AGAAGAAGAATCCAAAGGTT+TGG | 0.416854 | 8:+54621526 | MsG0880045130.01.T01:CDS |
| AAGACTGGGAAATTGCCTTC+TGG | 0.423203 | 8:+54621605 | MsG0880045130.01.T01:CDS |
| CACTATCACCGAAGAGAAAT+GGG | 0.423999 | 8:+54621712 | MsG0880045130.01.T01:CDS |
| TTTGCCAAAATCCTTGATAT+TGG | 0.424451 | 8:-54620881 | None:intergenic |
| CAAACTTTGCCATTAGAGAA+AGG | 0.427827 | 8:+54620837 | MsG0880045130.01.T01:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8:-54621381 | None:intergenic |
| TATCAAAGACTCAACTTGTA+AGG | 0.438404 | 8:+54621217 | MsG0880045130.01.T01:CDS |
| CTACGATTATATCTGTATCA+TGG | 0.444290 | 8:-54620953 | None:intergenic |
| GCCAAAATCCTTGATATTGG+TGG | 0.461798 | 8:-54620878 | None:intergenic |
| ATGTTTAGCCCATTTCTCTT+CGG | 0.462362 | 8:-54621720 | None:intergenic |
| GTAGCTACCACTCCCAAATC+AGG | 0.473936 | 8:+54620972 | MsG0880045130.01.T01:CDS |
| TGCTCCCAAAAGGGTCCCAT+TGG | 0.483845 | 8:-54621371 | None:intergenic |
| TGTAGAGGAGTGAGTCCAAT+GGG | 0.487163 | 8:+54621356 | MsG0880045130.01.T01:CDS |
| AAACTTTGCCATTAGAGAAA+GGG | 0.495208 | 8:+54620838 | MsG0880045130.01.T01:CDS |
| TGTGTAGAGAAGAGCCTTGG+AGG | 0.501089 | 8:-54621167 | None:intergenic |
| AACTTGGAGACTAATAAGAC+TGG | 0.514423 | 8:+54621590 | MsG0880045130.01.T01:CDS |
| GGGGATAATGAATCTAGATC+AGG | 0.515231 | 8:-54621146 | None:intergenic |
| AGATGTGTAGAGAAGAGCCT+TGG | 0.519657 | 8:-54621170 | None:intergenic |
| TACGATTATATCTGTATCAT+GGG | 0.520155 | 8:-54620952 | None:intergenic |
| TGATTGTTATCATGAATGTA+TGG | 0.524189 | 8:-54621047 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8:-54621380 | None:intergenic |
| CCCTACGTCCACCAATATCA+AGG | 0.532931 | 8:+54620870 | MsG0880045130.01.T01:CDS |
| GAAGAATCCAAAGGTTTGGT+TGG | 0.534930 | 8:+54621530 | MsG0880045130.01.T01:CDS |
| ACAAGTTAAGACCACATAGT+TGG | 0.537480 | 8:+54621297 | MsG0880045130.01.T01:CDS |
| CCTTGATATTGGTGGACGTA+GGG | 0.539308 | 8:-54620870 | None:intergenic |
| CAAACCACACAAGATCTTCA+AGG | 0.542152 | 8:+54620900 | MsG0880045130.01.T01:CDS |
| GAAGAGAAATGGGCTAAACA+TGG | 0.550159 | 8:+54621722 | MsG0880045130.01.T01:CDS |
| CTCCCAAATCAGGTACCACT+TGG | 0.552250 | 8:+54620982 | MsG0880045130.01.T01:CDS |
| TTCTTTCGTCGAGGCCAAGT+TGG | 0.555525 | 8:+54621644 | MsG0880045130.01.T01:CDS |
| GTGTAGAGAAGAGCCTTGGA+GGG | 0.561070 | 8:-54621166 | None:intergenic |
| ATATTTCTTGCGGTTGAGCA+AGG | 0.563864 | 8:-54621024 | None:intergenic |
| GCATGTATTAGGATATTGGC+AGG | 0.564003 | 8:+54621391 | MsG0880045130.01.T01:CDS |
| GTAAAGGGTAAGTTCCAAGA+AGG | 0.564258 | 8:-54621105 | None:intergenic |
| ACAAAAGAAGAAGAATCCAA+AGG | 0.588521 | 8:+54621521 | MsG0880045130.01.T01:CDS |
| AACTCCTTGAAGATCTTGTG+TGG | 0.593904 | 8:-54620904 | None:intergenic |
| TCTCAGATGAAATGATTCAA+CGG | 0.595222 | 8:+54621684 | MsG0880045130.01.T01:CDS |
| GGGAACACTTCCATTAGAAG+AGG | 0.598671 | 8:+54621319 | MsG0880045130.01.T01:CDS |
| TAAAGGGTAAGTTCCAAGAA+GGG | 0.605054 | 8:-54621104 | None:intergenic |
| AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8:-54621089 | None:intergenic |
| TTGTAGAGGAGTGAGTCCAA+TGG | 0.609516 | 8:+54621355 | MsG0880045130.01.T01:CDS |
| TAGATTCATTATCCCCTCCA+AGG | 0.609856 | 8:+54621153 | MsG0880045130.01.T01:CDS |
| TGTTAATGCTTTGAGCCAAG+TGG | 0.610189 | 8:-54620997 | None:intergenic |
| TGAGGGTTGTTAGTAAGCAA+AGG | 0.612891 | 8:-54621071 | None:intergenic |
| AGTGGTACCTGATTTGGGAG+TGG | 0.613042 | 8:-54620979 | None:intergenic |
| GAATGTATGGATATTTCTTG+CGG | 0.616190 | 8:-54621034 | None:intergenic |
| GGAAGTGTTCCCCAACTATG+TGG | 0.617769 | 8:-54621308 | None:intergenic |
| AAGAGAAATGGGCTAAACAT+GGG | 0.623036 | 8:+54621723 | MsG0880045130.01.T01:CDS |
| TGTAGAGAAGAGCCTTGGAG+GGG | 0.624064 | 8:-54621165 | None:intergenic |
| CAAAGACTCAACTTGTAAGG+TGG | 0.630632 | 8:+54621220 | MsG0880045130.01.T01:CDS |
| ACTTGGAGACTAATAAGACT+GGG | 0.632456 | 8:+54621591 | MsG0880045130.01.T01:CDS |
| AAGTTAAGACCACATAGTTG+GGG | 0.664111 | 8:+54621299 | MsG0880045130.01.T01:CDS |
| AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8:-54621088 | None:intergenic |
| TCCTTGATATTGGTGGACGT+AGG | 0.684594 | 8:-54620871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTTTTTTAAAGTAAA+GGG | - | Chr8:54621123-54621142 | None:intergenic | 10.0% |
| !!! | ATCTTTTTCAAATAAAAATT+AGG | - | Chr8:54621476-54621495 | None:intergenic | 10.0% |
| !!! | TCTTTTTCAAATAAAAATTA+GGG | - | Chr8:54621475-54621494 | None:intergenic | 10.0% |
| !!! | GAATATCTTTTTTAAAGTAA+AGG | - | Chr8:54621124-54621143 | None:intergenic | 15.0% |
| ! | CTCAAAAACATAACTTTCTT+TGG | - | Chr8:54621431-54621450 | None:intergenic | 25.0% |
| ! | TACGATTATATCTGTATCAT+GGG | - | Chr8:54620955-54620974 | None:intergenic | 25.0% |
| ! | TGATTGTTATCATGAATGTA+TGG | - | Chr8:54621050-54621069 | None:intergenic | 25.0% |
| !! | AATAATATTTTCTTTCGTCG+AGG | + | Chr8:54621635-54621654 | MsG0880045130.01.T01:CDS | 25.0% |
| !! | GAAAAAGATTGCTAAGTTTT+TGG | + | Chr8:54621487-54621506 | MsG0880045130.01.T01:CDS | 25.0% |
| !! | GATTCTTCTTCTTTTGTAAA+TGG | - | Chr8:54621518-54621537 | None:intergenic | 25.0% |
| !! | TCATATTCTTCCAAGTATTT+TGG | - | Chr8:54620789-54620808 | None:intergenic | 25.0% |
| !!! | ATATTATTTTGTTCACCAGA+AGG | - | Chr8:54621623-54621642 | None:intergenic | 25.0% |
| AAACTTTGCCATTAGAGAAA+GGG | + | Chr8:54620838-54620857 | MsG0880045130.01.T01:CDS | 30.0% | |
| ACAAAAGAAGAAGAATCCAA+AGG | + | Chr8:54621521-54621540 | MsG0880045130.01.T01:CDS | 30.0% | |
| CTACGATTATATCTGTATCA+TGG | - | Chr8:54620956-54620975 | None:intergenic | 30.0% | |
| GAATGTATGGATATTTCTTG+CGG | - | Chr8:54621037-54621056 | None:intergenic | 30.0% | |
| GTTGAGTCTTTGATAGATTT+CGG | - | Chr8:54621212-54621231 | None:intergenic | 30.0% | |
| TATCAAAGACTCAACTTGTA+AGG | + | Chr8:54621217-54621236 | MsG0880045130.01.T01:CDS | 30.0% | |
| TCTCAGATGAAATGATTCAA+CGG | + | Chr8:54621684-54621703 | MsG0880045130.01.T01:CDS | 30.0% | |
| TTTGCCAAAATCCTTGATAT+TGG | - | Chr8:54620884-54620903 | None:intergenic | 30.0% | |
| !! | AATTTTTGCTATCTCCAACT+TGG | - | Chr8:54621661-54621680 | None:intergenic | 30.0% |
| !!! | AGTGAAACAAAAGTGTCTTT+TGG | - | Chr8:54621263-54621282 | None:intergenic | 30.0% |
| AACTTGGAGACTAATAAGAC+TGG | + | Chr8:54621590-54621609 | MsG0880045130.01.T01:CDS | 35.0% | |
| AAGTTAAGACCACATAGTTG+GGG | + | Chr8:54621299-54621318 | MsG0880045130.01.T01:CDS | 35.0% | |
| ACAAGTTAAGACCACATAGT+TGG | + | Chr8:54621297-54621316 | MsG0880045130.01.T01:CDS | 35.0% | |
| ACTTGGAGACTAATAAGACT+GGG | + | Chr8:54621591-54621610 | MsG0880045130.01.T01:CDS | 35.0% | |
| AGAAGAAGAATCCAAAGGTT+TGG | + | Chr8:54621526-54621545 | MsG0880045130.01.T01:CDS | 35.0% | |
| ATGTTTAGCCCATTTCTCTT+CGG | - | Chr8:54621723-54621742 | None:intergenic | 35.0% | |
| CAAACTTTGCCATTAGAGAA+AGG | + | Chr8:54620837-54620856 | MsG0880045130.01.T01:CDS | 35.0% | |
| CAAGTTAAGACCACATAGTT+GGG | + | Chr8:54621298-54621317 | MsG0880045130.01.T01:CDS | 35.0% | |
| GTAATCATCCCTTTCTCTAA+TGG | - | Chr8:54620849-54620868 | None:intergenic | 35.0% | |
| TAAAGGGTAAGTTCCAAGAA+GGG | - | Chr8:54621107-54621126 | None:intergenic | 35.0% | |
| TATATCACCAACCAAACCTT+TGG | - | Chr8:54621540-54621559 | None:intergenic | 35.0% | |
| ! | TCCACCAATATCAAGGATTT+TGG | + | Chr8:54620877-54620896 | MsG0880045130.01.T01:CDS | 35.0% |
| !! | AAGAGAAATGGGCTAAACAT+GGG | + | Chr8:54621723-54621742 | MsG0880045130.01.T01:CDS | 35.0% |
| !! | TTTTGAGAATCTGAGCAACT+TGG | + | Chr8:54621574-54621593 | MsG0880045130.01.T01:CDS | 35.0% |
| AACTCCTTGAAGATCTTGTG+TGG | - | Chr8:54620907-54620926 | None:intergenic | 40.0% | |
| ACACTATCACCGAAGAGAAA+TGG | + | Chr8:54621711-54621730 | MsG0880045130.01.T01:CDS | 40.0% | |
| ATATTTCTTGCGGTTGAGCA+AGG | - | Chr8:54621027-54621046 | None:intergenic | 40.0% | |
| CAAACCACACAAGATCTTCA+AGG | + | Chr8:54620900-54620919 | MsG0880045130.01.T01:CDS | 40.0% | |
| CAAAGACTCAACTTGTAAGG+TGG | + | Chr8:54621220-54621239 | MsG0880045130.01.T01:CDS | 40.0% | |
| CACTATCACCGAAGAGAAAT+GGG | + | Chr8:54621712-54621731 | MsG0880045130.01.T01:CDS | 40.0% | |
| CACTCTTGTGCCAAAATACT+TGG | + | Chr8:54620776-54620795 | MsG0880045130.01.T01:CDS | 40.0% | |
| CCTAATACATGCTCCCAAAA+GGG | - | Chr8:54621383-54621402 | None:intergenic | 40.0% | |
| GCATGTATTAGGATATTGGC+AGG | + | Chr8:54621391-54621410 | MsG0880045130.01.T01:CDS | 40.0% | |
| GCCAAAATCCTTGATATTGG+TGG | - | Chr8:54620881-54620900 | None:intergenic | 40.0% | |
| GGGGATAATGAATCTAGATC+AGG | - | Chr8:54621149-54621168 | None:intergenic | 40.0% | |
| GTAAAGGGTAAGTTCCAAGA+AGG | - | Chr8:54621108-54621127 | None:intergenic | 40.0% | |
| TAGATTCATTATCCCCTCCA+AGG | + | Chr8:54621153-54621172 | MsG0880045130.01.T01:CDS | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | - | Chr8:54621384-54621403 | None:intergenic | 40.0% | |
| TGAGGGTTGTTAGTAAGCAA+AGG | - | Chr8:54621074-54621093 | None:intergenic | 40.0% | |
| ! | GAAGAATCCAAAGGTTTGGT+TGG | + | Chr8:54621530-54621549 | MsG0880045130.01.T01:CDS | 40.0% |
| ! | GCATTCGAGAGTTTTTGTAG+AGG | + | Chr8:54621341-54621360 | MsG0880045130.01.T01:CDS | 40.0% |
| ! | GGGAGCATGTATTAGGATAT+TGG | + | Chr8:54621387-54621406 | MsG0880045130.01.T01:CDS | 40.0% |
| ! | TGTTAATGCTTTGAGCCAAG+TGG | - | Chr8:54621000-54621019 | None:intergenic | 40.0% |
| !! | GAAGAGAAATGGGCTAAACA+TGG | + | Chr8:54621722-54621741 | MsG0880045130.01.T01:CDS | 40.0% |
| AAGACTGGGAAATTGCCTTC+TGG | + | Chr8:54621605-54621624 | MsG0880045130.01.T01:CDS | 45.0% | |
| AGATGTGTAGAGAAGAGCCT+TGG | - | Chr8:54621173-54621192 | None:intergenic | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | - | Chr8:54620987-54621006 | None:intergenic | 45.0% | |
| AGGATATTGGCAGGAGAGTT+TGG | + | Chr8:54621400-54621419 | MsG0880045130.01.T01:CDS | 45.0% | |
| CTCTCGAATGCCTCTTCTAA+TGG | - | Chr8:54621332-54621351 | None:intergenic | 45.0% | |
| GGGAACACTTCCATTAGAAG+AGG | + | Chr8:54621319-54621338 | MsG0880045130.01.T01:CDS | 45.0% | |
| TCATGCTCTTGTTCCCTTCT+TGG | + | Chr8:54621091-54621110 | MsG0880045130.01.T01:CDS | 45.0% | |
| TGTAGAGGAGTGAGTCCAAT+GGG | + | Chr8:54621356-54621375 | MsG0880045130.01.T01:CDS | 45.0% | |
| TTGTAGAGGAGTGAGTCCAA+TGG | + | Chr8:54621355-54621374 | MsG0880045130.01.T01:CDS | 45.0% | |
| ! | AAGAAGGGAACAAGAGCATG+AGG | - | Chr8:54621092-54621111 | None:intergenic | 45.0% |
| ! | AGAAGGGAACAAGAGCATGA+GGG | - | Chr8:54621091-54621110 | None:intergenic | 45.0% |
| ! | CCTTGATATTGGTGGACGTA+GGG | - | Chr8:54620873-54620892 | None:intergenic | 45.0% |
| ! | TCCTTGATATTGGTGGACGT+AGG | - | Chr8:54620874-54620893 | None:intergenic | 45.0% |
| !! | CCCTTTTGGGAGCATGTATT+AGG | + | Chr8:54621380-54621399 | MsG0880045130.01.T01:CDS | 45.0% |
| CCCTACGTCCACCAATATCA+AGG | + | Chr8:54620870-54620889 | MsG0880045130.01.T01:CDS | 50.0% | |
| CTCCCAAATCAGGTACCACT+TGG | + | Chr8:54620982-54621001 | MsG0880045130.01.T01:CDS | 50.0% | |
| GAGCCAAGTGGTACCTGATT+TGG | - | Chr8:54620988-54621007 | None:intergenic | 50.0% | |
| GTAGCTACCACTCCCAAATC+AGG | + | Chr8:54620972-54620991 | MsG0880045130.01.T01:CDS | 50.0% | |
| GTGTAGAGAAGAGCCTTGGA+GGG | - | Chr8:54621169-54621188 | None:intergenic | 50.0% | |
| TGTAGAGAAGAGCCTTGGAG+GGG | - | Chr8:54621168-54621187 | None:intergenic | 50.0% | |
| TGTGTAGAGAAGAGCCTTGG+AGG | - | Chr8:54621170-54621189 | None:intergenic | 50.0% | |
| TTCTTTCGTCGAGGCCAAGT+TGG | + | Chr8:54621644-54621663 | MsG0880045130.01.T01:CDS | 50.0% | |
| ! | GAGTCCAATGGGACCCTTTT+GGG | + | Chr8:54621367-54621386 | MsG0880045130.01.T01:CDS | 50.0% |
| ! | TGAGTCCAATGGGACCCTTT+TGG | + | Chr8:54621366-54621385 | MsG0880045130.01.T01:CDS | 50.0% |
| !! | AGTGGTACCTGATTTGGGAG+TGG | - | Chr8:54620982-54621001 | None:intergenic | 50.0% |
| !! | GGAAGTGTTCCCCAACTATG+TGG | - | Chr8:54621311-54621330 | None:intergenic | 50.0% |
| TGCTCCCAAAAGGGTCCCAT+TGG | - | Chr8:54621374-54621393 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 54620768 | 54621757 | 54620768 | ID=MsG0880045130.01;Name=MsG0880045130.01 |
| Chr8 | mRNA | 54620768 | 54621757 | 54620768 | ID=MsG0880045130.01.T01;Parent=MsG0880045130.01;Name=MsG0880045130.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|329 |
| Chr8 | exon | 54620768 | 54621757 | 54620768 | ID=MsG0880045130.01.T01:exon:23511;Parent=MsG0880045130.01.T01 |
| Chr8 | CDS | 54620768 | 54621757 | 54620768 | ID=MsG0880045130.01.T01:cds;Parent=MsG0880045130.01.T01 |
| Gene Sequence |
| Protein sequence |
