Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381220 | XP_013461781.1 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381220 | sp|Q5S1U6|IFRD1_PIG | 24.661 | 442 | 266 | 14 | 16 | 432 | 41 | 440 | 1.65e-25 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381220 | A0A072V2D3 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000570 | Msa0381220 | -0.803724 | 3.041345e-49 | -8.615850e-47 |
| Msa0370870 | Msa0381220 | 0.835672 | 1.463881e-56 | -8.615850e-47 |
| Msa0381220 | Msa0404700 | 0.802189 | 6.312858e-49 | -8.615850e-47 |
| Msa0381220 | Msa0416320 | 0.816493 | 5.374445e-52 | -8.615850e-47 |
| Msa0381220 | Msa0431020 | 0.947759 | 3.595836e-106 | -8.615850e-47 |
| Msa0381220 | Msa0462540 | 0.806518 | 7.911580e-50 | -8.615850e-47 |
| Msa0381220 | Msa0475050 | 0.806682 | 7.305544e-50 | -8.615850e-47 |
| Msa0381220 | Msa0598560 | 0.835024 | 2.134326e-56 | -8.615850e-47 |
| Msa0381220 | Msa0785430 | 0.804445 | 2.152525e-49 | -8.615850e-47 |
| Msa0381220 | Msa0866800 | 0.813837 | 2.090882e-51 | -8.615850e-47 |
| Msa0381220 | Msa0944730 | 0.833953 | 3.965062e-56 | -8.615850e-47 |
| Msa0381220 | Msa0962210 | 0.813655 | 2.293726e-51 | -8.615850e-47 |
| Msa0381220 | Msa1350690 | 0.807772 | 4.293681e-50 | -8.615850e-47 |
| Msa0381220 | Msa1360280 | 0.805295 | 1.430280e-49 | -8.615850e-47 |
| Msa0381220 | Msa1368180 | 0.822194 | 2.699307e-53 | -8.615850e-47 |
| Msa0381220 | Msa1383480 | 0.814432 | 1.545637e-51 | -8.615850e-47 |
| Msa0381220 | Msa1385580 | 0.800081 | 1.703352e-48 | -8.615850e-47 |
| Msa0381220 | Msa1442220 | -0.805139 | 1.541708e-49 | -8.615850e-47 |
| Msa0275400 | Msa0381220 | -0.803808 | 2.921090e-49 | -8.615850e-47 |
| Msa0287670 | Msa0381220 | 0.809038 | 2.305528e-50 | -8.615850e-47 |
| Msa0328380 | Msa0381220 | 0.833525 | 5.073053e-56 | -8.615850e-47 |
| Msa0362060 | Msa0381220 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0363100 | Msa0381220 | 0.804632 | 1.968448e-49 | -8.615850e-47 |
| Msa0363170 | Msa0381220 | 0.801040 | 1.086224e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381220 | MtrunA17_Chr3g0134791 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381220 | AT1G27760.3 | 56.923 | 455 | 175 | 6 | 1 | 449 | 1 | 440 | 1.32e-178 | 507 |
| Msa0381220 | AT1G27760.1 | 56.484 | 455 | 173 | 7 | 1 | 449 | 1 | 436 | 1.65e-174 | 496 |
| Msa0381220 | AT1G27760.2 | 57.143 | 427 | 158 | 7 | 29 | 449 | 18 | 425 | 4.36e-173 | 492 |
Find 94 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATTGGAACCTAATT+TGG | 0.073567 | 3_1:+83230133 | None:intergenic |
| ATATGATGCAGTGATTTATT+TGG | 0.165165 | 3_1:-83227718 | Msa0381220:three_prime_UTR |
| CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 3_1:+83228578 | None:intergenic |
| GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 3_1:+83228038 | None:intergenic |
| CCCATTGTAACAGTTGTTTC+TGG | 0.235321 | 3_1:+83231488 | None:intergenic |
| TATGATGCAGTGATTTATTT+GGG | 0.236355 | 3_1:-83227717 | Msa0381220:three_prime_UTR |
| GTTTCTGGTGGTTTGTTGTT+AGG | 0.258699 | 3_1:+83231503 | None:intergenic |
| ATCCACAAGTAAATCAATTT+AGG | 0.266902 | 3_1:+83227457 | None:intergenic |
| CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 3_1:+83228770 | None:intergenic |
| TCTTGAATAAGCTGTGTATT+AGG | 0.276385 | 3_1:+83231744 | None:intergenic |
| ATGAAAGATGAAGAATAATT+AGG | 0.279534 | 3_1:+83231564 | None:intergenic |
| ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 3_1:-83228849 | Msa0381220:CDS |
| ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 3_1:+83231054 | None:intergenic |
| ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 3_1:+83228009 | None:intergenic |
| TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 3_1:-83230451 | Msa0381220:intron |
| TGGGGATTCAATTATTCATT+TGG | 0.317931 | 3_1:-83227698 | Msa0381220:three_prime_UTR |
| CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 3_1:-83227769 | Msa0381220:CDS |
| ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 3_1:+83229013 | None:intergenic |
| CCGCTGATTGCTGTGTTGTC+TGG | 0.353005 | 3_1:-83227658 | Msa0381220:three_prime_UTR |
| TTTCTGGTGGTTTGTTGTTA+GGG | 0.357800 | 3_1:+83231504 | None:intergenic |
| TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 3_1:-83230388 | Msa0381220:CDS |
| CAGCTTATTCAAGATTGTTT+CGG | 0.373983 | 3_1:-83231735 | Msa0381220:five_prime_UTR |
| GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 3_1:-83228745 | Msa0381220:CDS |
| CATACATTGGAACCTAATTT+GGG | 0.377504 | 3_1:+83230134 | None:intergenic |
| AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 3_1:-83228402 | Msa0381220:CDS |
| AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 3_1:+83231063 | None:intergenic |
| CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 3_1:-83230146 | Msa0381220:CDS |
| ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 3_1:-83228396 | Msa0381220:CDS |
| AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 3_1:+83230571 | None:intergenic |
| CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 3_1:-83228578 | Msa0381220:CDS |
| CATCCATATTGACTGAATAA+TGG | 0.431054 | 3_1:+83227766 | None:intergenic |
| AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 3_1:+83228742 | None:intergenic |
| TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 3_1:-83228798 | Msa0381220:CDS |
| AGTTCAATAGCCTATTTATC+CGG | 0.449992 | 3_1:-83229023 | Msa0381220:CDS |
| TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 3_1:-83230234 | Msa0381220:intron |
| CAAAGTAGATTCGCGTACTA+CGG | 0.459071 | 3_1:-83227613 | Msa0381220:three_prime_UTR |
| ACCAGAAACAACTGTTACAA+TGG | 0.475750 | 3_1:-83231489 | Msa0381220:exon |
| AATGGCGAACATAGAATGTC+TGG | 0.477792 | 3_1:-83228188 | Msa0381220:CDS |
| GGATGAGACATGAGTTTAAG+TGG | 0.479097 | 3_1:-83227748 | Msa0381220:exon |
| GCAGTTATTAATTGAGCAGA+AGG | 0.482620 | 3_1:+83229960 | None:intergenic |
| TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 3_1:-83231270 | Msa0381220:CDS |
| AACCTAAATTGATTTACTTG+TGG | 0.491543 | 3_1:-83227459 | Msa0381220:three_prime_UTR |
| TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 3_1:-83228399 | Msa0381220:CDS |
| CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 3_1:+83228016 | None:intergenic |
| TAGCAAGAGATTCATCCAAA+GGG | 0.495141 | 3_1:+83230373 | None:intergenic |
| TTTACAAGAACGAAAACAAA+GGG | 0.500771 | 3_1:+83231587 | None:intergenic |
| ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 3_1:+83228908 | None:intergenic |
| GGGGTTCATTAAACATATGC+AGG | 0.506623 | 3_1:-83228376 | Msa0381220:intron |
| AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 3_1:+83228234 | None:intergenic |
| GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 3_1:-83230438 | Msa0381220:CDS |
| GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 3_1:-83228534 | Msa0381220:intron |
| TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 3_1:-83228398 | Msa0381220:CDS |
| AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 3_1:-83230180 | Msa0381220:CDS |
| GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 3_1:+83229004 | None:intergenic |
| CCAGAAACAACTGTTACAAT+GGG | 0.518714 | 3_1:-83231488 | Msa0381220:exon |
| AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 3_1:-83228970 | Msa0381220:CDS |
| AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 3_1:-83227789 | Msa0381220:intron |
| TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 3_1:-83228177 | Msa0381220:intron |
| CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 3_1:-83228397 | Msa0381220:CDS |
| AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 3_1:-83228804 | Msa0381220:CDS |
| TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 3_1:-83229893 | Msa0381220:CDS |
| GAAAGTTACATATTCTTACA+AGG | 0.545343 | 3_1:-83228858 | Msa0381220:CDS |
| TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 3_1:-83228395 | Msa0381220:CDS |
| ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 3_1:-83230560 | Msa0381220:intron |
| CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 3_1:+83230138 | None:intergenic |
| GACACATTCATGAGATCAGA+TGG | 0.557531 | 3_1:+83231273 | None:intergenic |
| ATTGTAACAGTTGTTTCTGG+TGG | 0.561054 | 3_1:+83231491 | None:intergenic |
| CTAGCAAGAGATTCATCCAA+AGG | 0.563507 | 3_1:+83230372 | None:intergenic |
| TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 3_1:-83229944 | Msa0381220:CDS |
| GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 3_1:-83229001 | Msa0381220:CDS |
| TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 3_1:-83229887 | Msa0381220:CDS |
| GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 3_1:-83228575 | Msa0381220:CDS |
| AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 3_1:+83228864 | None:intergenic |
| TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 3_1:-83227997 | Msa0381220:intron |
| TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 3_1:+83229913 | None:intergenic |
| AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 3_1:-83228767 | Msa0381220:CDS |
| ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 3_1:+83229905 | None:intergenic |
| ATGATGCAGTGATTTATTTG+GGG | 0.617585 | 3_1:-83227716 | Msa0381220:three_prime_UTR |
| CGAAAACAAAGGGAATTGAA+AGG | 0.618578 | 3_1:+83231597 | None:intergenic |
| AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 3_1:-83228981 | Msa0381220:CDS |
| ATCACTACATCCAACTGTCA+AGG | 0.621289 | 3_1:+83230428 | None:intergenic |
| AGCGATCAATGGACATAATG+TGG | 0.622561 | 3_1:-83230169 | Msa0381220:CDS |
| TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 3_1:-83228880 | Msa0381220:CDS |
| TGCTCAATTAATAACTGCTG+TGG | 0.636366 | 3_1:-83229955 | Msa0381220:CDS |
| GATGAGACATGAGTTTAAGT+GGG | 0.636453 | 3_1:-83227747 | Msa0381220:exon |
| GTTTACAAGAACGAAAACAA+AGG | 0.637113 | 3_1:+83231586 | None:intergenic |
| TTTATTTAAGGGGCACCACG+AGG | 0.637987 | 3_1:-83231093 | Msa0381220:intron |
| CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 3_1:-83228010 | Msa0381220:CDS |
| CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 3_1:+83228010 | None:intergenic |
| TTATTTAAGGGGCACCACGA+GGG | 0.671059 | 3_1:-83231092 | Msa0381220:intron |
| AGCAAGAGATTCATCCAAAG+GGG | 0.679651 | 3_1:+83230374 | None:intergenic |
| CCAGACAACACAGCAATCAG+CGG | 0.682498 | 3_1:+83227658 | None:intergenic |
| ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 3_1:-83228550 | Msa0381220:CDS |
| GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 3_1:-83228185 | Msa0381220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTTAAAAAAATGAAT+CGG | + | chr3_1:83227673-83227692 | None:intergenic | 10.0% |
| !!! | ATATAACTTGATTATTTTTT+AGG | - | chr3_1:83228223-83228242 | Msa0381220:CDS | 10.0% |
| !! | AATAAAGTAAAAATAAAGTA+GGG | + | chr3_1:83231627-83231646 | None:intergenic | 10.0% |
| !! | AAATAAAGTAAAAATAAAGT+AGG | + | chr3_1:83231628-83231647 | None:intergenic | 10.0% |
| !!! | ATCAATATTTAACTTAATGA+TGG | + | chr3_1:83228045-83228064 | None:intergenic | 15.0% |
| !!! | TAAATATTGATGATTATTGA+AGG | - | chr3_1:83228054-83228073 | Msa0381220:CDS | 15.0% |
| !!! | TATTTTTTAGGTTTTTGTTT+TGG | - | chr3_1:83228235-83228254 | Msa0381220:CDS | 15.0% |
| !! | ACATACATTATATATGAAAA+AGG | + | chr3_1:83228687-83228706 | None:intergenic | 15.0% |
| !! | TATAACATCAAAAACATAAA+AGG | + | chr3_1:83228921-83228940 | None:intergenic | 15.0% |
| !!! | CAAAATAAGTTGAAAAATAT+CGG | + | chr3_1:83229818-83229837 | None:intergenic | 15.0% |
| !!! | CAACTTATTTTGATAATTTA+AGG | - | chr3_1:83229826-83229845 | Msa0381220:intron | 15.0% |
| !! | ACTAAATTATTAGGAAAAAA+AGG | - | chr3_1:83229917-83229936 | Msa0381220:CDS | 15.0% |
| !! | CTAAATTATTAGGAAAAAAA+GGG | - | chr3_1:83229918-83229937 | Msa0381220:CDS | 15.0% |
| !!! | TTTGCTTATATTTAAGATTT+AGG | + | chr3_1:83229944-83229963 | None:intergenic | 15.0% |
| !! | TCAAATAATAGTAACAATAA+GGG | + | chr3_1:83230521-83230540 | None:intergenic | 15.0% |
| !! | ATGAAAGATGAAGAATAATT+AGG | + | chr3_1:83227639-83227658 | None:intergenic | 20.0% |
| !! | TTTCCTGTTGAATTTATTTA+AGG | - | chr3_1:83228095-83228114 | Msa0381220:intron | 20.0% |
| !! | TTCCTGTTGAATTTATTTAA+GGG | - | chr3_1:83228096-83228115 | Msa0381220:intron | 20.0% |
| !!! | TTTAGTCAAAATTTTACCAA+TGG | + | chr3_1:83228659-83228678 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAAAATGAAAGCA+TGG | + | chr3_1:83229542-83229561 | None:intergenic | 20.0% |
| !!! | TAAGGTTTAAATTAGAGTTT+TGG | - | chr3_1:83229844-83229863 | Msa0381220:intron | 20.0% |
| !!! | TTTTTCCTAATAATTTAGTC+TGG | + | chr3_1:83229916-83229935 | None:intergenic | 20.0% |
| !! | ACATAATTTCACACTTATTA+AGG | + | chr3_1:83230003-83230022 | None:intergenic | 20.0% |
| !!! | TGTATTTTTACTTATAGTAG+AGG | - | chr3_1:83230020-83230039 | Msa0381220:intron | 20.0% |
| !! | ATATTCTTACAAGGATTAAA+AGG | - | chr3_1:83230351-83230370 | Msa0381220:intron | 20.0% |
| !! | CTCAAATAATAGTAACAATA+AGG | + | chr3_1:83230522-83230541 | None:intergenic | 20.0% |
| !! | TAAATAAATGAAAGAAAGCA+AGG | + | chr3_1:83230696-83230715 | None:intergenic | 20.0% |
| !!! | TTGTTTAGATACTTTTTCTT+GGG | + | chr3_1:83230994-83231013 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGATACTTTTTCT+TGG | + | chr3_1:83230995-83231014 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGTATCTAAACAA+TGG | - | chr3_1:83230994-83231013 | Msa0381220:intron | 20.0% |
| !!! | CATTCTTACTATATTTTGTT+AGG | - | chr3_1:83231230-83231249 | Msa0381220:CDS | 20.0% |
| !!! | TAACACTGATTTTGATGATT+CGG | + | chr3_1:83227565-83227584 | None:intergenic | 25.0% |
| ! | TTTACAAGAACGAAAACAAA+GGG | + | chr3_1:83227616-83227635 | None:intergenic | 25.0% |
| ! | AAAAAATGAATCGGAATTTG+AGG | + | chr3_1:83227664-83227683 | None:intergenic | 25.0% |
| ! | TTGATGCATTAGATGAAAAA+AGG | - | chr3_1:83228000-83228019 | Msa0381220:CDS | 25.0% |
| !! | ATATTGATGATTATTGAAGG+TGG | - | chr3_1:83228057-83228076 | Msa0381220:intron | 25.0% |
| ! | TCCTGTTGAATTTATTTAAG+GGG | - | chr3_1:83228097-83228116 | Msa0381220:intron | 25.0% |
| ! | TCAAATATGTCAATTCAAAC+AGG | - | chr3_1:83228468-83228487 | Msa0381220:intron | 25.0% |
| ! | TTAAAGACATACATTACACA+AGG | + | chr3_1:83228494-83228513 | None:intergenic | 25.0% |
| ! | AAAACAAATAAATCACAGCA+TGG | + | chr3_1:83228541-83228560 | None:intergenic | 25.0% |
| ! | TGTCTTGCTTCAATAAAAAA+GGG | - | chr3_1:83228589-83228608 | Msa0381220:CDS | 25.0% |
| ! | AATAAAAAAGGGATCAAAGA+AGG | - | chr3_1:83228600-83228619 | Msa0381220:intron | 25.0% |
| ! | ATTAAATTTCATTCCATTGC+AGG | - | chr3_1:83228741-83228760 | Msa0381220:CDS | 25.0% |
| ! | TGCTAGAAGTAAAAATGTTT+CGG | - | chr3_1:83228845-83228864 | Msa0381220:CDS | 25.0% |
| ! | AAAAACATAAAAGGAGAACA+GGG | + | chr3_1:83228912-83228931 | None:intergenic | 25.0% |
| !!! | ATTTTAACAGATGCATACAT+TGG | + | chr3_1:83229082-83229101 | None:intergenic | 25.0% |
| ! | TAAATAAAGGGAAGACAAAT+GGG | + | chr3_1:83229180-83229199 | None:intergenic | 25.0% |
| ! | TAATTAAGTGATTTAAGCAG+TGG | + | chr3_1:83229474-83229493 | None:intergenic | 25.0% |
| !! | TTGATCAATTTGAAACTGTT+TGG | - | chr3_1:83229561-83229580 | Msa0381220:intron | 25.0% |
| ! | AGCAACAACAAAATATAAGT+GGG | + | chr3_1:83229784-83229803 | None:intergenic | 25.0% |
| ! | AATTTCACACTTATTAAGGA+TGG | + | chr3_1:83229999-83230018 | None:intergenic | 25.0% |
| ! | TACAAATCTATATGTAGGAT+AGG | + | chr3_1:83230099-83230118 | None:intergenic | 25.0% |
| ! | AGGAATACAAATCTATATGT+AGG | + | chr3_1:83230104-83230123 | None:intergenic | 25.0% |
| ! | GGAAAATAAAATCAATAAGC+TGG | + | chr3_1:83230153-83230172 | None:intergenic | 25.0% |
| ! | GAAAGTTACATATTCTTACA+AGG | - | chr3_1:83230342-83230361 | Msa0381220:intron | 25.0% |
| !!! | AGATATCTTGGATTTTTTTG+AGG | - | chr3_1:83230467-83230486 | Msa0381220:intron | 25.0% |
| !!! | TTTGTTCCTTTTAATTTGAC+TGG | - | chr3_1:83231374-83231393 | Msa0381220:intron | 25.0% |
| ! | ATATGATGCAGTGATTTATT+TGG | - | chr3_1:83231482-83231501 | Msa0381220:intron | 25.0% |
| ! | TATGATGCAGTGATTTATTT+GGG | - | chr3_1:83231483-83231502 | Msa0381220:exon | 25.0% |
| !! | AACCTAAATTGATTTACTTG+TGG | - | chr3_1:83231741-83231760 | Msa0381220:five_prime_UTR | 25.0% |
| ! | ATCCACAAGTAAATCAATTT+AGG | + | chr3_1:83231746-83231765 | None:intergenic | 25.0% |
| TCTTGAATAAGCTGTGTATT+AGG | + | chr3_1:83227459-83227478 | None:intergenic | 30.0% | |
| CAGCTTATTCAAGATTGTTT+CGG | - | chr3_1:83227465-83227484 | Msa0381220:three_prime_UTR | 30.0% | |
| ! | AGTAGTGTTCGAATTTTGAA+TGG | - | chr3_1:83227527-83227546 | Msa0381220:three_prime_UTR | 30.0% |
| GTTTACAAGAACGAAAACAA+AGG | + | chr3_1:83227617-83227636 | None:intergenic | 30.0% | |
| !! | GTGTTTGTTATGTTGTGTTT+AGG | - | chr3_1:83227831-83227850 | Msa0381220:intron | 30.0% |
| !! | ACTCTTGAAAGCATCAATTA+TGG | + | chr3_1:83228149-83228168 | None:intergenic | 30.0% |
| !!! | TTTTAGGTTTTTGTTTTGGC+TGG | - | chr3_1:83228239-83228258 | Msa0381220:CDS | 30.0% |
| !!! | GGTACAATTTTTAGAGTAAC+AGG | - | chr3_1:83228260-83228279 | Msa0381220:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr3_1:83228352-83228371 | Msa0381220:intron | 30.0% |
| CTGTCTTGCTTCAATAAAAA+AGG | - | chr3_1:83228588-83228607 | Msa0381220:CDS | 30.0% | |
| CAAAAACATAAAAGGAGAAC+AGG | + | chr3_1:83228913-83228932 | None:intergenic | 30.0% | |
| !! | TCATTTTTGTGTATAGTTGC+TGG | - | chr3_1:83228957-83228976 | Msa0381220:CDS | 30.0% |
| !! | TTGGCTATAATCACTTTTGT+TGG | - | chr3_1:83228985-83229004 | Msa0381220:CDS | 30.0% |
| !! | CTATAATCACTTTTGTTGGA+GGG | - | chr3_1:83228989-83229008 | Msa0381220:CDS | 30.0% |
| CATACATTGGAACCTAATTT+GGG | + | chr3_1:83229069-83229088 | None:intergenic | 30.0% | |
| AAATAAAGGGAAGACAAATG+GGG | + | chr3_1:83229179-83229198 | None:intergenic | 30.0% | |
| GTAAATAAAGGGAAGACAAA+TGG | + | chr3_1:83229181-83229200 | None:intergenic | 30.0% | |
| TGAAGCTGAATTCAAAACAT+TGG | - | chr3_1:83229307-83229326 | Msa0381220:intron | 30.0% | |
| TGAATTCAAAACATTGGCAA+AGG | - | chr3_1:83229313-83229332 | Msa0381220:intron | 30.0% | |
| TATATGAGTTACATCGTCTA+TGG | + | chr3_1:83229506-83229525 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCCTCTTTCTAT+GGG | + | chr3_1:83229675-83229694 | None:intergenic | 30.0% |
| !!! | TTTTTTCATCCCTCTTTCTA+TGG | + | chr3_1:83229676-83229695 | None:intergenic | 30.0% |
| TGGGATTACATTTCTCTTAA+GGG | + | chr3_1:83229765-83229784 | None:intergenic | 30.0% | |
| CAGCAACAACAAAATATAAG+TGG | + | chr3_1:83229785-83229804 | None:intergenic | 30.0% | |
| TCCTAATAATTTAGTCTGGA+GGG | + | chr3_1:83229912-83229931 | None:intergenic | 30.0% | |
| TTCCTAATAATTTAGTCTGG+AGG | + | chr3_1:83229913-83229932 | None:intergenic | 30.0% | |
| ATCTATATGTAGGATAGGTA+GGG | + | chr3_1:83230094-83230113 | None:intergenic | 30.0% | |
| AATCTATATGTAGGATAGGT+AGG | + | chr3_1:83230095-83230114 | None:intergenic | 30.0% | |
| AAATAGGCTATTGAACTGAA+TGG | + | chr3_1:83230174-83230193 | None:intergenic | 30.0% | |
| AGTTCAATAGCCTATTTATC+CGG | - | chr3_1:83230177-83230196 | Msa0381220:CDS | 30.0% | |
| AAGAATATGTAACTTTCCTG+TGG | + | chr3_1:83230339-83230358 | None:intergenic | 30.0% | |
| TCAATGCAAAAATCTTTCTG+TGG | - | chr3_1:83230386-83230405 | Msa0381220:CDS | 30.0% | |
| CTGACTATTAAGATCTTTCT+TGG | + | chr3_1:83230433-83230452 | None:intergenic | 30.0% | |
| AGAAAGATCTTAATAGTCAG+AGG | - | chr3_1:83230433-83230452 | Msa0381220:CDS | 30.0% | |
| !!! | TGGATTTTTTTGAGGTATGT+TGG | - | chr3_1:83230475-83230494 | Msa0381220:intron | 30.0% |
| !!! | ATTTTTTTGAGGTATGTTGG+TGG | - | chr3_1:83230478-83230497 | Msa0381220:intron | 30.0% |
| ACTTATGAATAAGAGTCAGA+AGG | - | chr3_1:83230556-83230575 | Msa0381220:intron | 30.0% | |
| ! | TGATCTTTTATTGTCATGCT+AGG | - | chr3_1:83230588-83230607 | Msa0381220:CDS | 30.0% |
| CCAATCTTCATTGAAATTTC+AGG | + | chr3_1:83230625-83230644 | None:intergenic | 30.0% | |
| CCTGAAATTTCAATGAAGAT+TGG | - | chr3_1:83230622-83230641 | Msa0381220:CDS | 30.0% | |
| GAAATTTCAATGAAGATTGG+TGG | - | chr3_1:83230625-83230644 | Msa0381220:CDS | 30.0% | |
| TTCATTAAACATATGCAGGT+TGG | - | chr3_1:83230828-83230847 | Msa0381220:intron | 30.0% | |
| ACAACTAGGTGCTAAAAAAA+AGG | + | chr3_1:83230864-83230883 | None:intergenic | 30.0% | |
| AGAAACTAAAGACATCTTGT+AGG | + | chr3_1:83230969-83230988 | None:intergenic | 30.0% | |
| !!! | ACCAAATTCAGTTTTGAACA+AGG | - | chr3_1:83231161-83231180 | Msa0381220:intron | 30.0% |
| AAATGCTACTGTACATCATA+CGG | + | chr3_1:83231291-83231310 | None:intergenic | 30.0% | |
| AGGAATCCAGTCAAATTAAA+AGG | + | chr3_1:83231383-83231402 | None:intergenic | 30.0% | |
| TTCCTTATTGTTGAATCAAC+AGG | - | chr3_1:83231398-83231417 | Msa0381220:intron | 30.0% | |
| TCCTTATTGTTGAATCAACA+GGG | - | chr3_1:83231399-83231418 | Msa0381220:intron | 30.0% | |
| ! | CATCCATATTGACTGAATAA+TGG | + | chr3_1:83231437-83231456 | None:intergenic | 30.0% |
| ATGATGCAGTGATTTATTTG+GGG | - | chr3_1:83231484-83231503 | Msa0381220:exon | 30.0% | |
| TGGGGATTCAATTATTCATT+TGG | - | chr3_1:83231502-83231521 | Msa0381220:five_prime_UTR | 30.0% | |
| CGAAAACAAAGGGAATTGAA+AGG | + | chr3_1:83227606-83227625 | None:intergenic | 35.0% | |
| !! | TTTCTGGTGGTTTGTTGTTA+GGG | + | chr3_1:83227699-83227718 | None:intergenic | 35.0% |
| !! | ATTGTAACAGTTGTTTCTGG+TGG | + | chr3_1:83227712-83227731 | None:intergenic | 35.0% |
| ACCAGAAACAACTGTTACAA+TGG | - | chr3_1:83227711-83227730 | Msa0381220:three_prime_UTR | 35.0% | |
| CCAGAAACAACTGTTACAAT+GGG | - | chr3_1:83227712-83227731 | Msa0381220:three_prime_UTR | 35.0% | |
| ATGGGTAAACGTAAGTTTCT+AGG | - | chr3_1:83227730-83227749 | Msa0381220:three_prime_UTR | 35.0% | |
| TGGGTAAACGTAAGTTTCTA+GGG | - | chr3_1:83227731-83227750 | Msa0381220:three_prime_UTR | 35.0% | |
| GCCCCTTAAATAAATTCAAC+AGG | + | chr3_1:83228101-83228120 | None:intergenic | 35.0% | |
| AGCATCAATTATGGCTGAAA+AGG | + | chr3_1:83228140-83228159 | None:intergenic | 35.0% | |
| AGATGCAAGAGTTATCTCTT+TGG | + | chr3_1:83228632-83228651 | None:intergenic | 35.0% | |
| TAGCAAGAGATTCATCCAAA+GGG | + | chr3_1:83228830-83228849 | None:intergenic | 35.0% | |
| GAAGTAAAAATGTTTCGGTG+AGG | - | chr3_1:83228850-83228869 | Msa0381220:CDS | 35.0% | |
| !! | GCTATAATCACTTTTGTTGG+AGG | - | chr3_1:83228988-83229007 | Msa0381220:CDS | 35.0% |
| GCATACATTGGAACCTAATT+TGG | + | chr3_1:83229070-83229089 | None:intergenic | 35.0% | |
| AAGCTGAAGCGGTAAATAAA+GGG | + | chr3_1:83229192-83229211 | None:intergenic | 35.0% | |
| TAAGCTGAAGCGGTAAATAA+AGG | + | chr3_1:83229193-83229212 | None:intergenic | 35.0% | |
| AAAGAGTGAATAAGCTGAAG+CGG | + | chr3_1:83229203-83229222 | None:intergenic | 35.0% | |
| CTTCAGCTTATTCACTCTTT+AGG | - | chr3_1:83229203-83229222 | Msa0381220:intron | 35.0% | |
| GCAGTTATTAATTGAGCAGA+AGG | + | chr3_1:83229243-83229262 | None:intergenic | 35.0% | |
| TGCTCAATTAATAACTGCTG+TGG | - | chr3_1:83229245-83229264 | Msa0381220:intron | 35.0% | |
| GTCGATATTATACCTCTTAC+AGG | + | chr3_1:83229413-83229432 | None:intergenic | 35.0% | |
| ! | TGTTTGGAGTTTCACACAAT+AGG | - | chr3_1:83229577-83229596 | Msa0381220:intron | 35.0% |
| ! | GTTTGGAGTTTCACACAATA+GGG | - | chr3_1:83229578-83229597 | Msa0381220:intron | 35.0% |
| ! | GAATAACACTTCACGCATTT+TGG | - | chr3_1:83229644-83229663 | Msa0381220:intron | 35.0% |
| GTGGGATTACATTTCTCTTA+AGG | + | chr3_1:83229766-83229785 | None:intergenic | 35.0% | |
| GGCAATCTATTCTATAGACT+AGG | - | chr3_1:83229865-83229884 | Msa0381220:intron | 35.0% | |
| TCCCTCCAGACTAAATTATT+AGG | - | chr3_1:83229908-83229927 | Msa0381220:CDS | 35.0% | |
| TAGATAAAATGTACTCCCTC+TGG | + | chr3_1:83230046-83230065 | None:intergenic | 35.0% | |
| TCTATATGTAGGATAGGTAG+GGG | + | chr3_1:83230093-83230112 | None:intergenic | 35.0% | |
| AAATCAATAAGCTGGAACCA+AGG | + | chr3_1:83230145-83230164 | None:intergenic | 35.0% | |
| ATCTAGAAGACCGGATAAAT+AGG | + | chr3_1:83230190-83230209 | None:intergenic | 35.0% | |
| GTCTTCTTTATCTAGAAGAC+CGG | + | chr3_1:83230199-83230218 | None:intergenic | 35.0% | |
| GTCTTCTAGATAAAGAAGAC+AGG | - | chr3_1:83230199-83230218 | Msa0381220:CDS | 35.0% | |
| !!! | CTGGCTCTAATTTTTGAGAT+TGG | - | chr3_1:83230249-83230268 | Msa0381220:intron | 35.0% |
| ! | TATCGATAAATTTTCGACCG+AGG | - | chr3_1:83230275-83230294 | Msa0381220:intron | 35.0% |
| ATGCAAAAATCTTTCTGTGG+AGG | - | chr3_1:83230389-83230408 | Msa0381220:CDS | 35.0% | |
| AATCCAAGATATCTCTGAAC+AGG | + | chr3_1:83230461-83230480 | None:intergenic | 35.0% | |
| ! | CTTTTATTGTCATGCTAGGA+TGG | - | chr3_1:83230592-83230611 | Msa0381220:CDS | 35.0% |
| AATTTCATCAAGCACTTCCT+TGG | - | chr3_1:83230798-83230817 | Msa0381220:intron | 35.0% | |
| ! | ACAAGCTTTTGACAACAACT+AGG | + | chr3_1:83230878-83230897 | None:intergenic | 35.0% |
| AAGAGGGTCAGAAAAACAAA+AGG | + | chr3_1:83230920-83230939 | None:intergenic | 35.0% | |
| ATCAGCAGATAACAAGTGAA+AGG | + | chr3_1:83231105-83231124 | None:intergenic | 35.0% | |
| ! | GCCTTGTTCAAAACTGAATT+TGG | + | chr3_1:83231165-83231184 | None:intergenic | 35.0% |
| GATGAGACATGAGTTTAAGT+GGG | - | chr3_1:83231453-83231472 | Msa0381220:intron | 35.0% | |
| !! | GTTTCTGGTGGTTTGTTGTT+AGG | + | chr3_1:83227700-83227719 | None:intergenic | 40.0% |
| ! | CCCATTGTAACAGTTGTTTC+TGG | + | chr3_1:83227715-83227734 | None:intergenic | 40.0% |
| GACACATTCATGAGATCAGA+TGG | + | chr3_1:83227930-83227949 | None:intergenic | 40.0% | |
| TCTGATCTCATGAATGTGTC+TGG | - | chr3_1:83227930-83227949 | Msa0381220:intron | 40.0% | |
| ACAGGCAATTTCAACTCACT+AGG | - | chr3_1:83228278-83228297 | Msa0381220:intron | 40.0% | |
| CAGGCAATTTCAACTCACTA+GGG | - | chr3_1:83228279-83228298 | Msa0381220:intron | 40.0% | |
| TCTACACTTGTGAGACTGTT+CGG | + | chr3_1:83228443-83228462 | None:intergenic | 40.0% | |
| TCATTCCATTGCAGGTTGTT+TGG | - | chr3_1:83228749-83228768 | Msa0381220:CDS | 40.0% | |
| ATCACTACATCCAACTGTCA+AGG | + | chr3_1:83228775-83228794 | None:intergenic | 40.0% | |
| TGAAGAATCTGTTACCCCTT+TGG | - | chr3_1:83228812-83228831 | Msa0381220:CDS | 40.0% | |
| AGCAAGAGATTCATCCAAAG+GGG | + | chr3_1:83228829-83228848 | None:intergenic | 40.0% | |
| CTAGCAAGAGATTCATCCAA+AGG | + | chr3_1:83228831-83228850 | None:intergenic | 40.0% | |
| AGAAGAAACAGAGCGATCAA+TGG | - | chr3_1:83229020-83229039 | Msa0381220:CDS | 40.0% | |
| AGCGATCAATGGACATAATG+TGG | - | chr3_1:83229031-83229050 | Msa0381220:intron | 40.0% | |
| CATTGGAACCTAATTTGGGA+TGG | + | chr3_1:83229065-83229084 | None:intergenic | 40.0% | |
| ATTCAGCTTCAGATTGCCTA+CGG | + | chr3_1:83229298-83229317 | None:intergenic | 40.0% | |
| CTCAATGCCATAGATGATGT+AGG | - | chr3_1:83229447-83229466 | Msa0381220:intron | 40.0% | |
| ! | TGCGTGAAGTGTTATTCTAG+TGG | + | chr3_1:83229641-83229660 | None:intergenic | 40.0% |
| TTGGACTAACCCATAGAAAG+AGG | - | chr3_1:83229663-83229682 | Msa0381220:intron | 40.0% | |
| TGGACTAACCCATAGAAAGA+GGG | - | chr3_1:83229664-83229683 | Msa0381220:intron | 40.0% | |
| TTACTTATAGTAGAGGCCAG+AGG | - | chr3_1:83230027-83230046 | Msa0381220:intron | 40.0% | |
| TACTTATAGTAGAGGCCAGA+GGG | - | chr3_1:83230028-83230047 | Msa0381220:intron | 40.0% | |
| !! | TTCCTTGTGTAGCTGTTTCT+TGG | - | chr3_1:83230119-83230138 | Msa0381220:intron | 40.0% |
| ATCACTTGCATTCTTAGCCT+CGG | + | chr3_1:83230295-83230314 | None:intergenic | 40.0% | |
| TCAAGAAGAGAGTAAACCAC+AGG | - | chr3_1:83230320-83230339 | Msa0381220:intron | 40.0% | |
| AAAAATCTTTCTGTGGAGGC+TGG | - | chr3_1:83230393-83230412 | Msa0381220:CDS | 40.0% | |
| GAACCTGTTCAGAGATATCT+TGG | - | chr3_1:83230455-83230474 | Msa0381220:intron | 40.0% | |
| GGGGTTCATTAAACATATGC+AGG | - | chr3_1:83230824-83230843 | Msa0381220:intron | 40.0% | |
| AAGTCGTTGTCCTAATACCA+CGG | + | chr3_1:83230946-83230965 | None:intergenic | 40.0% | |
| AATGGCGAACATAGAATGTC+TGG | - | chr3_1:83231012-83231031 | Msa0381220:intron | 40.0% | |
| ! | TAGAATGTCTGGTGGTGAAA+AGG | - | chr3_1:83231023-83231042 | Msa0381220:intron | 40.0% |
| ! | TAAGTCTTGTGATGTCTGTG+AGG | - | chr3_1:83231061-83231080 | Msa0381220:CDS | 40.0% |
| ! | ACCTATTCTTTTACGTGCAG+AGG | - | chr3_1:83231127-83231146 | Msa0381220:intron | 40.0% |
| TCCTCTGCACGTAAAAGAAT+AGG | + | chr3_1:83231131-83231150 | None:intergenic | 40.0% | |
| !!! | ATTCAGTTTTGAACAAGGCC+AGG | - | chr3_1:83231166-83231185 | Msa0381220:intron | 40.0% |
| !! | GCCCTGTTGATTCAACAATA+AGG | + | chr3_1:83231403-83231422 | None:intergenic | 40.0% |
| TATTGTTGAATCAACAGGGC+AGG | - | chr3_1:83231403-83231422 | Msa0381220:intron | 40.0% | |
| CGGCCATTATTCAGTCAATA+TGG | - | chr3_1:83231431-83231450 | Msa0381220:intron | 40.0% | |
| GGATGAGACATGAGTTTAAG+TGG | - | chr3_1:83231452-83231471 | Msa0381220:intron | 40.0% | |
| CAAAGTAGATTCGCGTACTA+CGG | - | chr3_1:83231587-83231606 | Msa0381220:five_prime_UTR | 40.0% | |
| !! | TTTATTTAAGGGGCACCACG+AGG | - | chr3_1:83228107-83228126 | Msa0381220:intron | 45.0% |
| !! | TTATTTAAGGGGCACCACGA+GGG | - | chr3_1:83228108-83228127 | Msa0381220:intron | 45.0% |
| !!! | TGAAAAGGCATTTTCCCTCG+TGG | + | chr3_1:83228125-83228144 | None:intergenic | 45.0% |
| !! | CAACTCACTAGGGCATTGTT+TGG | - | chr3_1:83228289-83228308 | Msa0381220:intron | 45.0% |
| CTACACTTGTGAGACTGTTC+GGG | + | chr3_1:83228442-83228461 | None:intergenic | 45.0% | |
| ACTCTTGCATCTCAAGCCAT+TGG | - | chr3_1:83228640-83228659 | Msa0381220:intron | 45.0% | |
| TGTATAGTTGCTGGACTGCT+TGG | - | chr3_1:83228966-83228985 | Msa0381220:CDS | 45.0% | |
| CGAGTGATCCATCCCAAATT+AGG | - | chr3_1:83229054-83229073 | Msa0381220:intron | 45.0% | |
| ! | TCTTTTCTCCTCTCTACCGT+AGG | - | chr3_1:83229279-83229298 | Msa0381220:intron | 45.0% |
| ! | CCTCTTACAGGAAGCATGAA+TGG | + | chr3_1:83229401-83229420 | None:intergenic | 45.0% |
| CCATTCATGCTTCCTGTAAG+AGG | - | chr3_1:83229398-83229417 | Msa0381220:intron | 45.0% | |
| CAGTGGTCCTACATCATCTA+TGG | + | chr3_1:83229457-83229476 | None:intergenic | 45.0% | |
| GAGTTACATCGTCTATGGAC+TGG | + | chr3_1:83229501-83229520 | None:intergenic | 45.0% | |
| AGGTCAGTAAGAATTGCTGC+TGG | - | chr3_1:83230219-83230238 | Msa0381220:CDS | 45.0% | |
| ATTCTCTACAGACATCGTCG+TGG | - | chr3_1:83230650-83230669 | Msa0381220:intron | 45.0% | |
| GTCGTGGTCTCAAATGATAC+AGG | - | chr3_1:83230666-83230685 | Msa0381220:intron | 45.0% | |
| TTCATCAAGCACTTCCTTGG+AGG | - | chr3_1:83230801-83230820 | Msa0381220:intron | 45.0% | |
| TCATCAAGCACTTCCTTGGA+GGG | - | chr3_1:83230802-83230821 | Msa0381220:intron | 45.0% | |
| ATGTCTGTGAGGACTTTCAC+TGG | - | chr3_1:83231072-83231091 | Msa0381220:CDS | 45.0% | |
| CTTATTGAGTAACTGGGTCC+TGG | + | chr3_1:83231187-83231206 | None:intergenic | 45.0% | |
| CCGCTGCTTATTGAGTAACT+GGG | + | chr3_1:83231193-83231212 | None:intergenic | 45.0% | |
| CCCAGTTACTCAATAAGCAG+CGG | - | chr3_1:83231190-83231209 | Msa0381220:intron | 45.0% | |
| ACCGCTGCTTATTGAGTAAC+TGG | + | chr3_1:83231194-83231213 | None:intergenic | 45.0% | |
| TAAGCAGCGGTTACAATCTG+AGG | - | chr3_1:83231203-83231222 | Msa0381220:CDS | 45.0% | |
| GCATAAATGACAGCGAAGCA+AGG | + | chr3_1:83231317-83231336 | None:intergenic | 45.0% | |
| AATCAACAGGGCAGGAACTT+CGG | - | chr3_1:83231411-83231430 | Msa0381220:intron | 45.0% | |
| CAAGGCCAAACAACCTGCAA+TGG | + | chr3_1:83228757-83228776 | None:intergenic | 50.0% | |
| !! | GGTTGTTTGGCCTTGACAGT+TGG | - | chr3_1:83228762-83228781 | Msa0381220:CDS | 50.0% |
| TAACTGCTGTGGTGTCTGCA+TGG | - | chr3_1:83229256-83229275 | Msa0381220:intron | 50.0% | |
| TCAGATTGCCTACGGTAGAG+AGG | + | chr3_1:83229290-83229309 | None:intergenic | 50.0% | |
| GGCCAAGAAACAGCTACACA+AGG | + | chr3_1:83230124-83230143 | None:intergenic | 50.0% | |
| !! | GTGTAGCTGTTTCTTGGCCT+TGG | - | chr3_1:83230125-83230144 | Msa0381220:intron | 50.0% |
| AATTGCTGCTGGTGAAGCAC+TGG | - | chr3_1:83230230-83230249 | Msa0381220:CDS | 50.0% | |
| AATCTTTCTGTGGAGGCTGG+TGG | - | chr3_1:83230396-83230415 | Msa0381220:CDS | 50.0% | |
| CATCAAGCACTTCCTTGGAG+GGG | - | chr3_1:83230803-83230822 | Msa0381220:intron | 50.0% | |
| ATCAAGCACTTCCTTGGAGG+GGG | - | chr3_1:83230804-83230823 | Msa0381220:intron | 50.0% | |
| GTTTAATGAACCCCCCTCCA+AGG | + | chr3_1:83230818-83230837 | None:intergenic | 50.0% | |
| CCTAATACCACGGAGGAAGA+GGG | + | chr3_1:83230936-83230955 | None:intergenic | 50.0% | |
| TCCTAATACCACGGAGGAAG+AGG | + | chr3_1:83230937-83230956 | None:intergenic | 50.0% | |
| TCGTTGTCCTAATACCACGG+AGG | + | chr3_1:83230943-83230962 | None:intergenic | 50.0% | |
| GGCGAACATAGAATGTCTGG+TGG | - | chr3_1:83231015-83231034 | Msa0381220:intron | 50.0% | |
| CCAGACAACACAGCAATCAG+CGG | + | chr3_1:83231545-83231564 | None:intergenic | 50.0% | |
| TCTGTGGAGGCTGGTGGAAA+AGG | - | chr3_1:83230402-83230421 | Msa0381220:CDS | 55.0% | |
| TCAAGCACTTCCTTGGAGGG+GGG | - | chr3_1:83230805-83230824 | Msa0381220:intron | 55.0% | |
| TTTCTGACCCTCTTCCTCCG+TGG | - | chr3_1:83230926-83230945 | Msa0381220:intron | 55.0% | |
| CCCTCTTCCTCCGTGGTATT+AGG | - | chr3_1:83230933-83230952 | Msa0381220:intron | 55.0% | |
| ! | CCGCTGATTGCTGTGTTGTC+TGG | - | chr3_1:83231542-83231561 | Msa0381220:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 83227427 | 83231795 | 83227427 | ID=Msa0381220;Name=Msa0381220 |
| chr3_1 | mRNA | 83227427 | 83231795 | 83227427 | ID=Msa0381220-mRNA-1;Parent=Msa0381220;Name=Msa0381220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=303|0.91|0.92|1|1|1|13|331|450 |
| chr3_1 | exon | 83227427 | 83227802 | 83227427 | ID=Msa0381220-mRNA-1:exon:21363;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83227998 | 83228075 | 83227998 | ID=Msa0381220-mRNA-1:exon:21362;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83228178 | 83228267 | 83228178 | ID=Msa0381220-mRNA-1:exon:21361;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83228377 | 83228427 | 83228377 | ID=Msa0381220-mRNA-1:exon:21360;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83228535 | 83228612 | 83228535 | ID=Msa0381220-mRNA-1:exon:21359;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83228734 | 83229043 | 83228734 | ID=Msa0381220-mRNA-1:exon:21358;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83229867 | 83229997 | 83229867 | ID=Msa0381220-mRNA-1:exon:21357;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83230139 | 83230249 | 83230139 | ID=Msa0381220-mRNA-1:exon:21356;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83230356 | 83230459 | 83230356 | ID=Msa0381220-mRNA-1:exon:21355;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83230561 | 83230655 | 83230561 | ID=Msa0381220-mRNA-1:exon:21354;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83231025 | 83231105 | 83231025 | ID=Msa0381220-mRNA-1:exon:21353;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83231201 | 83231369 | 83231201 | ID=Msa0381220-mRNA-1:exon:21352;Parent=Msa0381220-mRNA-1 |
| chr3_1 | exon | 83231483 | 83231795 | 83231483 | ID=Msa0381220-mRNA-1:exon:21351;Parent=Msa0381220-mRNA-1 |
| chr3_1 | five_prime_UTR | 83231493 | 83231795 | 83231493 | ID=Msa0381220-mRNA-1:five_prime_utr;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83231483 | 83231492 | 83231483 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83231201 | 83231369 | 83231201 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83231025 | 83231105 | 83231025 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83230561 | 83230655 | 83230561 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83230356 | 83230459 | 83230356 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83230139 | 83230249 | 83230139 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83229867 | 83229997 | 83229867 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83228734 | 83229043 | 83228734 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83228535 | 83228612 | 83228535 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83228377 | 83228427 | 83228377 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83228178 | 83228267 | 83228178 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83227998 | 83228075 | 83227998 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | CDS | 83227758 | 83227802 | 83227758 | ID=Msa0381220-mRNA-1:cds;Parent=Msa0381220-mRNA-1 |
| chr3_1 | three_prime_UTR | 83227427 | 83227757 | 83227427 | ID=Msa0381220-mRNA-1:three_prime_utr;Parent=Msa0381220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
