AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350690 MtrunA17_Chr2g0331461 95.447 637 28 1 1 636 1 637 0.0 1194
Msa1350690 MtrunA17_Chr2g0331481 84.434 636 99 0 1 636 1 636 0.0 1098
Msa1350690 MtrunA17_Chr2g0331471 83.019 636 107 1 1 636 65 699 0.0 1080
Msa1350690 MtrunA17_Chr2g0331511 78.997 638 121 5 1 636 1 627 0.0 1043
Msa1350690 MtrunA17_Chr4g0003761 66.444 599 188 6 1 592 1 593 0.0 813
Msa1350690 MtrunA17_Chr1g0177591 67.826 575 160 5 1 575 24 573 0.0 798
Msa1350690 MtrunA17_Chr2g0331521 55.651 584 248 6 1 580 1 577 0.0 682
Msa1350690 MtrunA17_Chr1g0177611 68.035 463 129 3 113 575 1 444 0.0 656
Msa1350690 MtrunA17_Chr1g0177631 68.683 463 126 3 113 575 1 444 0.0 641
Msa1350690 MtrunA17_Chr8g0390331 46.459 579 297 6 16 586 6 579 0.0 532
Msa1350690 MtrunA17_Chr1g0147631 47.804 592 292 8 5 584 1 587 4.61e-179 520
Msa1350690 MtrunA17_Chr1g0157601 46.154 559 287 7 14 568 7 555 6.19e-176 511
Msa1350690 MtrunA17_Chr1g0157611 47.232 578 284 9 14 586 8 569 1.67e-171 500
Msa1350690 MtrunA17_Chr1g0157621 44.386 570 305 7 46 611 1 562 2.42e-157 464
Msa1350690 MtrunA17_Chr5g0415791 36.457 587 348 11 15 585 19 596 2.60e-128 391
Msa1350690 MtrunA17_Chr4g0059991 35.140 609 364 11 9 602 7 599 4.50e-123 377
Msa1350690 MtrunA17_Chr4g0059971 36.637 565 346 7 11 566 20 581 4.47e-122 374
Msa1350690 MtrunA17_Chr5g0422881 34.010 591 370 9 8 589 3 582 4.43e-118 364
Msa1350690 MtrunA17_Chr7g0255601 34.064 593 366 12 15 593 17 598 1.81e-116 360
Msa1350690 MtrunA17_Chr7g0255621 32.943 598 376 13 17 600 12 598 7.27e-114 353
Msa1350690 MtrunA17_Chr4g0059981 34.583 587 362 12 14 581 15 598 3.35e-113 352
Msa1350690 MtrunA17_Chr7g0255611 32.779 601 379 12 10 598 14 601 6.32e-113 351
Msa1350690 MtrunA17_Chr8g0362781 34.744 567 351 11 14 566 17 578 2.62e-109 341
Msa1350690 MtrunA17_Chr8g0375311 35.273 550 338 9 25 566 40 579 1.71e-107 336
Msa1350690 MtrunA17_Chr8g0375321 33.391 581 365 9 2 568 6 578 8.61e-104 327
Msa1350690 MtrunA17_Chr8g0375291 34.552 547 336 11 25 561 40 574 6.22e-103 324
Msa1350690 MtrunA17_Chr3g0104011 34.601 552 338 12 25 566 22 560 4.96e-102 322
Msa1350690 MtrunA17_Chr8g0375351 33.273 556 351 9 21 566 34 579 2.92e-101 320
Msa1350690 MtrunA17_Chr4g0060001 31.667 600 385 12 14 601 18 604 1.50e-97 311
Msa1350690 MtrunA17_Chr8g0375341 32.671 554 357 8 21 566 34 579 1.58e-97 310
Msa1350690 MtrunA17_Chr4g0005901 33.877 552 340 12 25 566 32 568 4.81e-96 306
Msa1350690 MtrunA17_Chr8g0375331 33.977 518 324 8 35 544 34 541 7.50e-96 305
Msa1350690 MtrunA17_Chr8g0362801 35.524 487 290 10 113 583 1 479 1.49e-95 302
Msa1350690 MtrunA17_Chr7g0241741 32.743 565 346 11 15 560 3 552 2.89e-94 301
Msa1350690 MtrunA17_Chr8g0375361 33.635 553 343 11 25 566 39 578 2.79e-92 296
Msa1350690 MtrunA17_Chr7g0240271 30.537 596 381 12 14 586 3 588 3.05e-92 296
Msa1350690 MtrunA17_Chr7g0240281 31.325 581 370 14 25 589 24 591 3.82e-90 291
Msa1350690 MtrunA17_Chr3g0142091 33.058 605 361 14 2 594 3 575 1.39e-88 286
Msa1350690 MtrunA17_Chr5g0399061 30.986 568 365 15 25 579 26 579 6.80e-88 285
Msa1350690 MtrunA17_Chr3g0142101 32.297 579 352 12 25 594 35 582 2.91e-87 283
Msa1350690 MtrunA17_Chr2g0325961 33.737 578 338 14 1 566 1 545 1.58e-85 278
Msa1350690 MtrunA17_Chr2g0325951 33.563 581 334 16 1 566 1 544 4.23e-85 276
Msa1350690 MtrunA17_Chr7g0214731 32.378 593 353 15 29 592 65 638 1.43e-83 275
Msa1350690 MtrunA17_Chr2g0326211 34.072 587 323 17 1 566 1 544 2.94e-83 272
Msa1350690 MtrunA17_Chr7g0261811 31.389 583 363 13 36 600 38 601 1.24e-82 271
Msa1350690 MtrunA17_Chr5g0399071 29.021 572 369 12 14 566 14 567 4.79e-82 270
Msa1350690 MtrunA17_Chr7g0261851 31.311 610 379 16 11 604 12 597 2.64e-81 268
Msa1350690 MtrunA17_Chr4g0014781 31.173 571 355 13 4 566 10 550 3.08e-81 267
Msa1350690 MtrunA17_Chr1g0187241 30.676 577 366 13 26 585 26 585 4.48e-81 267
Msa1350690 MtrunA17_Chr4g0014871 31.185 574 359 13 2 566 6 552 6.47e-81 266
Msa1350690 MtrunA17_Chr3g0112671 29.519 603 386 13 1 589 1 578 1.87e-80 265
Msa1350690 MtrunA17_Chr4g0014791 31.944 576 342 14 4 566 10 548 2.71e-80 264
Msa1350690 MtrunA17_Chr4g0056431 30.637 581 371 13 25 588 24 589 3.10e-80 265
Msa1350690 MtrunA17_Chr5g0415841 32.833 466 291 11 113 566 1 456 5.51e-80 261
Msa1350690 MtrunA17_Chr5g0439381 30.619 565 358 11 29 584 32 571 7.52e-80 264
Msa1350690 MtrunA17_Chr7g0261881 31.023 577 360 14 36 594 38 594 4.13e-79 262
Msa1350690 MtrunA17_Chr1g0166711 31.597 576 360 13 36 596 36 592 2.60e-78 260
Msa1350690 MtrunA17_Chr3g0112611 32.092 564 353 14 36 588 43 587 2.80e-78 260
Msa1350690 MtrunA17_Chr3g0077151 31.047 554 339 10 25 570 28 546 3.90e-78 258
Msa1350690 MtrunA17_Chr7g0261791 31.005 587 366 14 21 587 23 590 7.54e-78 259
Msa1350690 MtrunA17_Chr4g0008651 30.354 537 353 12 36 566 45 566 1.28e-77 258
Msa1350690 MtrunA17_Chr3g0114501 31.193 545 342 15 36 566 33 558 1.44e-77 258
Msa1350690 MtrunA17_Chr7g0261771 30.272 588 379 13 26 598 31 602 1.60e-77 258
Msa1350690 MtrunA17_Chr4g0063591 29.492 590 398 11 1 586 1 576 2.14e-77 257
Msa1350690 MtrunA17_Chr4g0014801 30.541 573 354 14 4 566 10 548 4.05e-77 256
Msa1350690 MtrunA17_Chr4g0014841 30.594 572 355 13 4 566 10 548 2.33e-76 254
Msa1350690 MtrunA17_Chr7g0240381 29.483 580 361 16 2 566 9 555 1.01e-75 253
Msa1350690 MtrunA17_Chr1g0166791 31.250 560 344 16 26 566 24 561 1.07e-75 253
Msa1350690 MtrunA17_Chr8g0353031 31.304 575 348 10 28 587 21 563 4.74e-73 245
Msa1350690 MtrunA17_Chr2g0284701 28.477 604 400 15 1 584 11 602 7.37e-73 246
Msa1350690 MtrunA17_Chr7g0214461 29.131 587 386 11 10 586 63 629 1.63e-72 245
Msa1350690 MtrunA17_Chr3g0133341 30.071 562 360 12 16 564 5 546 3.32e-72 243
Msa1350690 MtrunA17_Chr5g0400371 29.061 554 380 8 37 582 124 672 2.21e-71 243
Msa1350690 MtrunA17_Chr7g0240131 29.918 488 319 10 113 588 1 477 6.63e-71 237
Msa1350690 MtrunA17_Chr2g0276751 28.183 589 386 14 11 586 18 582 1.25e-70 239
Msa1350690 MtrunA17_Chr7g0240211 30.652 460 297 9 113 560 1 450 5.74e-70 234
Msa1350690 MtrunA17_Chr7g0240181 30.652 460 297 9 113 560 1 450 5.92e-70 234
Msa1350690 MtrunA17_Chr1g0193391 27.660 611 403 15 11 611 3 584 9.43e-70 237
Msa1350690 MtrunA17_Chr7g0235521 30.652 460 297 9 113 560 1 450 1.02e-69 234
Msa1350690 MtrunA17_Chr4g0014861 31.973 441 276 9 134 566 3 427 1.42e-68 229
Msa1350690 MtrunA17_Chr1g0166741 30.669 538 335 15 26 549 27 540 2.89e-68 233
Msa1350690 MtrunA17_Chr7g0271221 29.255 564 364 14 11 565 3 540 5.07e-67 229
Msa1350690 MtrunA17_Chr1g0213711 28.748 567 369 12 15 566 8 554 9.79e-67 229
Msa1350690 MtrunA17_Chr7g0240151 30.435 460 280 11 113 560 1 432 1.53e-65 222
Msa1350690 MtrunA17_Chr1g0147591 55.670 194 81 4 154 344 9 200 2.28e-65 213
Msa1350690 MtrunA17_Chr8g0379971 29.016 610 381 16 14 579 2 603 2.60e-65 225
Msa1350690 MtrunA17_Chr1g0166771 29.310 522 330 16 45 552 11 507 3.38e-65 224
Msa1350690 MtrunA17_Chr7g0218851 28.857 551 366 9 26 566 47 581 3.02e-63 220
Msa1350690 MtrunA17_Chr4g0054891 28.358 536 363 8 37 563 122 645 3.98e-63 221
Msa1350690 MtrunA17_Chr7g0261661 29.821 503 322 13 113 600 1 487 7.11e-63 216
Msa1350690 MtrunA17_Chr1g0166731 30.353 481 307 10 112 579 9 474 3.59e-62 214
Msa1350690 MtrunA17_Chr3g0082631 31.808 437 257 12 151 563 34 453 1.40e-61 212
Msa1350690 MtrunA17_Chr4g0011471 28.967 542 362 11 36 566 27 556 2.23e-61 214
Msa1350690 MtrunA17_Chr8g0379991 30.293 581 353 17 46 579 1 576 6.96e-61 213
Msa1350690 MtrunA17_Chr7g0217461 28.826 562 365 15 1 544 2 546 1.49e-60 212
Msa1350690 MtrunA17_Chr8g0362711 26.998 563 362 14 28 565 27 565 2.21e-58 206
Msa1350690 MtrunA17_Chr5g0415961 24.518 571 383 12 21 565 18 566 3.60e-54 194
Msa1350690 MtrunA17_Chr4g0011041 25.490 561 387 14 23 566 32 578 4.50e-52 189
Msa1350690 MtrunA17_Chr4g0069581 29.259 499 314 16 86 571 47 519 9.05e-50 182
Msa1350690 MtrunA17_Chr7g0261751 29.114 474 276 13 26 454 31 489 8.92e-48 176
Msa1350690 MtrunA17_Chr6g0451841 25.650 577 358 15 18 566 1 534 3.72e-47 174
Msa1350690 MtrunA17_Chr3g0112631 31.119 286 189 3 294 579 3 280 8.44e-45 161
Msa1350690 MtrunA17_Chr3g0142121 32.781 302 173 7 295 594 11 284 4.93e-43 156
Msa1350690 MtrunA17_Chr7g0261731 33.231 325 193 9 26 339 31 342 8.51e-43 157
Msa1350690 MtrunA17_Chr4g0060071 29.391 279 176 7 290 565 32 292 3.63e-37 140
Msa1350690 MtrunA17_Chr3g0142111 31.690 284 184 5 25 301 46 326 2.47e-34 133
Msa1350690 MtrunA17_Chr7g0234381 26.840 462 285 13 112 566 3 418 3.69e-31 126
Msa1350690 MtrunA17_Chr7g0261721 28.261 230 162 2 371 598 4 232 4.59e-29 115
Msa1350690 MtrunA17_Chr7g0234181 26.797 459 283 13 115 566 1 413 9.92e-28 116
Msa1350690 MtrunA17_Chr7g0234151 25.918 463 288 14 112 566 3 418 2.43e-26 112
Msa1350690 MtrunA17_Chr2g0326221 30.672 238 131 6 331 566 15 220 8.85e-25 103
Msa1350690 MtrunA17_Chr1g0177601 71.930 57 16 0 55 111 1 57 3.43e-20 84.7
Msa1350690 MtrunA17_Chr1g0177621 71.930 57 16 0 55 111 1 57 3.43e-20 84.7
Msa1350690 MtrunA17_Chr1g0147581 41.071 112 60 1 431 542 10 115 2.17e-19 84.3
Msa1350690 MtrunA17_Chr8g0382591 39.695 131 71 5 294 420 3 129 2.34e-18 82.0
Msa1350690 MtrunA17_Chr3g0112651 28.713 202 131 6 100 295 9 203 4.92e-17 80.5
Msa1350690 MtrunA17_Chr7g0240221 32.432 111 65 1 11 111 3 113 4.87e-14 68.9
Msa1350690 MtrunA17_Chr7g0240191 32.432 111 65 1 11 111 3 113 4.87e-14 68.9
Msa1350690 MtrunA17_Chr7g0240161 32.432 111 65 1 11 111 3 113 4.87e-14 68.9
Msa1350690 MtrunA17_Chr7g0240141 31.532 111 66 1 11 111 3 113 1.65e-13 67.4
Msa1350690 MtrunA17_Chr8g0362791 38.372 86 53 0 30 115 41 126 2.13e-12 65.1
Msa1350690 MtrunA17_Chr7g0235511 30.973 113 66 2 11 111 3 115 1.06e-11 62.4
Msa1350690 MtrunA17_Chr4g0060061 33.962 106 68 2 137 241 8 112 9.25e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350690 AT1G52190.1 54.939 577 253 6 15 585 9 584 0.0 657
Msa1350690 AT3G16180.1 53.242 586 267 7 11 591 6 589 0.0 636
Msa1350690 AT1G69870.1 34.662 577 360 9 18 585 42 610 1.38e-119 369
Msa1350690 AT5G62680.1 37.333 600 352 14 9 593 25 615 7.82e-118 364
Msa1350690 AT1G68570.1 35.434 587 364 8 9 586 5 585 1.90e-115 357
Msa1350690 AT1G18880.1 34.722 576 354 10 30 594 22 586 2.21e-112 349
Msa1350690 AT3G47960.1 36.572 566 340 10 10 566 50 605 1.73e-111 348
Msa1350690 AT5G11570.1 38.787 544 249 11 28 567 14 477 7.10e-111 342
Msa1350690 AT1G27080.1 34.039 567 347 13 24 580 11 560 5.06e-106 332
Msa1350690 AT1G62200.1 35.079 573 345 10 1 562 25 581 1.54e-105 332
Msa1350690 AT1G68570.2 34.650 557 349 8 39 586 5 555 6.30e-104 327
Msa1350690 AT2G02040.1 33.857 573 356 11 5 566 18 578 4.93e-103 325
Msa1350690 AT3G54140.1 35.185 540 329 11 36 566 33 560 8.90e-101 318
Msa1350690 AT3G54140.2 35.185 540 329 11 36 566 33 560 8.90e-101 318
Msa1350690 AT1G62200.2 33.721 602 343 11 1 562 25 610 1.70e-100 319
Msa1350690 AT1G62200.3 33.721 602 343 11 1 562 39 624 1.83e-100 320
Msa1350690 AT5G01180.2 35.135 555 328 13 21 560 17 554 1.37e-99 315
Msa1350690 AT5G01180.3 35.135 555 328 13 21 560 17 554 1.37e-99 315
Msa1350690 AT5G01180.1 35.135 555 328 13 21 560 17 554 1.37e-99 315
Msa1350690 AT1G27080.2 33.273 550 340 13 56 595 1 533 1.63e-97 309
Msa1350690 AT5G28470.2 33.517 543 342 10 25 559 15 546 8.61e-97 308
Msa1350690 AT5G28470.1 33.333 543 341 11 25 559 15 544 5.32e-94 301
Msa1350690 AT3G45650.1 32.920 565 344 11 9 566 4 540 7.76e-92 295
Msa1350690 AT3G45660.1 32.855 557 345 12 14 566 8 539 7.68e-90 290
Msa1350690 AT3G45660.3 32.855 557 345 12 14 566 8 539 7.68e-90 290
Msa1350690 AT3G45660.2 32.855 557 345 12 14 566 29 560 1.62e-89 290
Msa1350690 AT3G54450.1 31.763 573 347 11 25 580 10 555 2.40e-87 283
Msa1350690 AT3G45650.2 31.472 591 344 12 9 566 4 566 2.31e-86 281
Msa1350690 AT3G45710.1 31.439 563 351 10 12 566 6 541 9.03e-86 279
Msa1350690 AT1G69860.1 32.369 553 341 11 25 566 16 546 6.13e-85 277
Msa1350690 AT2G02020.1 31.685 546 324 10 25 566 40 540 6.44e-85 276
Msa1350690 AT2G26690.1 30.192 573 383 10 13 581 10 569 1.50e-82 271
Msa1350690 AT3G45720.1 31.107 569 350 14 28 588 20 554 2.47e-80 265
Msa1350690 AT2G26690.2 30.642 545 361 10 41 581 5 536 1.35e-79 262
Msa1350690 AT5G46050.1 30.258 542 349 11 21 549 19 544 2.43e-79 263
Msa1350690 AT3G21670.1 29.264 598 393 12 11 599 12 588 2.45e-78 260
Msa1350690 AT2G26690.3 30.784 536 354 10 50 581 2 524 1.33e-77 257
Msa1350690 AT2G37900.1 29.455 550 355 12 24 563 34 560 1.84e-77 258
Msa1350690 AT1G12110.1 31.771 576 361 15 21 579 19 579 8.05e-77 256
Msa1350690 AT3G45680.1 30.810 568 356 12 7 566 1 539 8.56e-77 255
Msa1350690 AT1G22540.1 32.188 553 343 11 21 566 22 549 3.84e-76 253
Msa1350690 AT3G45700.1 30.319 564 346 12 11 566 5 529 1.77e-75 251
Msa1350690 AT1G33440.1 28.934 591 371 15 23 589 32 597 1.39e-74 251
Msa1350690 AT5G46040.1 30.857 525 336 11 36 549 36 544 2.25e-74 249
Msa1350690 AT1G72125.1 30.185 540 344 9 36 566 38 553 2.70e-74 249
Msa1350690 AT5G13400.1 31.228 570 361 11 29 582 66 620 7.31e-74 249
Msa1350690 AT2G40460.1 29.946 551 353 12 36 575 33 561 1.28e-73 248
Msa1350690 AT3G53960.1 27.915 609 400 14 10 594 6 599 2.36e-73 247
Msa1350690 AT2G37900.2 29.293 495 318 11 78 563 10 481 1.85e-71 239
Msa1350690 AT1G59740.1 29.474 570 364 15 11 563 23 571 4.44e-71 241
Msa1350690 AT1G72140.1 28.929 560 340 12 25 566 32 551 5.32e-70 237
Msa1350690 AT2G02020.2 30.331 544 313 11 25 566 40 519 1.44e-69 235
Msa1350690 AT1G32450.1 28.147 572 388 9 37 592 47 611 3.00e-69 236
Msa1350690 AT1G22550.1 29.948 581 362 13 2 566 5 556 7.11e-69 234
Msa1350690 AT1G72120.1 29.720 572 348 12 11 566 16 549 2.29e-67 230
Msa1350690 AT5G46050.2 30.942 446 285 8 113 549 1 432 7.43e-67 226
Msa1350690 AT1G22570.1 29.084 557 361 9 2 547 5 538 1.10e-66 228
Msa1350690 AT1G27040.1 28.832 548 358 10 29 565 29 555 5.89e-66 226
Msa1350690 AT1G27040.2 28.832 548 358 10 29 565 25 551 6.78e-66 226
Msa1350690 AT1G72130.1 28.261 552 342 10 25 566 23 530 2.52e-64 221
Msa1350690 AT1G22570.2 29.537 518 331 9 41 547 7 501 7.33e-64 220
Msa1350690 AT4G21680.1 27.304 586 383 14 3 566 6 570 7.73e-64 221
Msa1350690 AT1G27040.3 28.810 538 351 10 39 565 7 523 5.97e-63 218
Msa1350690 AT3G45690.1 28.980 559 322 15 15 566 6 496 8.76e-63 217
Msa1350690 AT5G19640.1 27.273 583 374 16 28 593 60 609 3.54e-58 206
Msa1350690 AT5G14940.1 26.270 571 367 12 25 572 5 544 7.29e-53 191
Msa1350690 AT1G69850.1 26.362 569 365 15 29 565 27 573 4.69e-52 189
Msa1350690 AT1G72130.2 28.406 433 266 9 144 566 14 412 1.94e-50 181
Msa1350690 AT1G72130.3 28.406 433 266 9 144 566 14 412 1.94e-50 181
Msa1350690 AT3G01350.1 25.694 576 374 16 25 572 5 554 1.78e-48 179
Msa1350690 AT5G62730.1 24.955 557 381 11 28 572 57 588 4.52e-47 175
Msa1350690 AT5G62730.2 24.954 549 375 11 36 572 6 529 1.35e-45 170
Msa1350690 AT3G25260.1 25.752 532 334 14 41 565 35 512 7.79e-45 167
Msa1350690 AT3G25280.1 25.385 520 335 14 52 565 46 518 4.49e-37 145
Msa1350690 AT2G38100.2 24.081 544 353 13 55 586 2 497 5.95e-29 121
Msa1350690 AT2G38100.1 24.081 544 353 13 55 586 18 513 1.59e-28 120
Msa1350690 AT2G38100.3 24.081 544 353 13 55 586 24 519 1.93e-28 120

Find 147 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 tig0011794:-10978 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 tig0011794:-12006 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 tig0011794:+12182 Msa1350690:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 tig0011794:+11076 Msa1350690:CDS
ACTCGTGAAGGCCGACTATT+AGG 0.208164 tig0011794:+12864 Msa1350690:three_prime_UTR
TTATCTTTGTAATACTTATA+TGG 0.221781 tig0011794:+11714 Msa1350690:CDS
GCTGAGGCATTCAATGTTAT+TGG 0.226194 tig0011794:+11983 Msa1350690:CDS
AAATAAAGCTTGTGTTATTC+AGG 0.227714 tig0011794:+11454 Msa1350690:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 tig0011794:-11561 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 tig0011794:+11952 Msa1350690:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 tig0011794:+9849 Msa1350690:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 tig0011794:+11082 Msa1350690:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 tig0011794:+12439 Msa1350690:CDS
CAAGTAGGAGGCTGCGTCGC+TGG 0.300060 tig0011794:-10809 None:intergenic
ATTTCATGTTCTTTAGCATT+TGG 0.304538 tig0011794:+10926 Msa1350690:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 tig0011794:+12244 Msa1350690:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 tig0011794:+11037 Msa1350690:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 tig0011794:-9582 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 tig0011794:-11648 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 tig0011794:+11572 Msa1350690:CDS
AAGGAGAAAGAAAGCAATTC+AGG 0.340505 tig0011794:+11880 Msa1350690:CDS
AGGTTCTATTATCAGTTTCC+TGG 0.349967 tig0011794:+9893 Msa1350690:CDS
GCGTTAATTCTGATAGGAAT+TGG 0.359891 tig0011794:+10893 Msa1350690:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 tig0011794:-10842 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 tig0011794:-12034 None:intergenic
ATTAACATCGGAGGCTCGTT+TGG 0.361174 tig0011794:+11608 Msa1350690:CDS
CAACATGATATTGTATTTGA+TGG 0.361317 tig0011794:+9740 Msa1350690:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 tig0011794:+11956 Msa1350690:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 tig0011794:-11764 None:intergenic
TCATTTCGACAAATATTTAT+GGG 0.366923 tig0011794:+12183 Msa1350690:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 tig0011794:-12086 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 tig0011794:+12049 Msa1350690:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 tig0011794:-12349 None:intergenic
TTCCAATAACAATAGAGCTT+TGG 0.382182 tig0011794:+10976 Msa1350690:CDS
GACATGTGGTTCCCACGATT+TGG 0.391714 tig0011794:-12602 None:intergenic
AGACCACCCTTGCTTCTTTG+TGG 0.395960 tig0011794:-9549 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 tig0011794:+12286 Msa1350690:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 tig0011794:+9873 Msa1350690:CDS
TCTTATATTGGTCGATTCCT+AGG 0.404111 tig0011794:+9861 Msa1350690:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 tig0011794:+12054 Msa1350690:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 tig0011794:+11764 Msa1350690:CDS
ATCAAATACAATATCATGTT+GGG 0.422265 tig0011794:-9738 None:intergenic
ATCCATGTGTCATAATCTTA+AGG 0.424248 tig0011794:-12804 None:intergenic
AGGCTGCGTCGCTGGGATCA+TGG 0.429972 tig0011794:-10801 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 tig0011794:+10993 Msa1350690:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 tig0011794:+10856 Msa1350690:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 tig0011794:-11806 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 tig0011794:+12236 Msa1350690:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 tig0011794:+10887 Msa1350690:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 tig0011794:+12075 Msa1350690:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 tig0011794:+9512 Msa1350690:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 tig0011794:+11806 Msa1350690:CDS
AAGTAGGAGGCTGCGTCGCT+GGG 0.464764 tig0011794:-10808 None:intergenic
AAATATTTATGGGTTATAGC+TGG 0.467548 tig0011794:+12193 Msa1350690:CDS
TTCACGGGTGAGTGTTAGAA+AGG 0.468477 tig0011794:+12633 Msa1350690:three_prime_UTR
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 tig0011794:+12133 Msa1350690:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 tig0011794:+12447 Msa1350690:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 tig0011794:-9834 None:intergenic
AGGAGGAATAGTACGATAGA+AGG 0.477176 tig0011794:+12467 Msa1350690:exon
ATTCTGATAGGAATTGGAAA+TGG 0.478772 tig0011794:+10899 Msa1350690:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 tig0011794:+12067 Msa1350690:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 tig0011794:+11302 Msa1350690:CDS
TGAATTCAAGAATGGTGGTC+AGG 0.484071 tig0011794:+12405 Msa1350690:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 tig0011794:+9867 Msa1350690:CDS
AGGATGGCAAGTGCTGGACT+TGG 0.485050 tig0011794:+9714 Msa1350690:CDS
CACATGTCACATGTGTTTCA+CGG 0.485689 tig0011794:+12617 Msa1350690:three_prime_UTR
TGAGATTAATTTCCAAATCG+TGG 0.488271 tig0011794:+12590 Msa1350690:three_prime_UTR
CTTGCTAGGATGGCAAGTGC+TGG 0.493484 tig0011794:+9708 Msa1350690:CDS
CTCGTGAAGGCCGACTATTA+GGG 0.495249 tig0011794:+12865 Msa1350690:three_prime_UTR
CCTGCTAGAAAGAATGTCAT+TGG 0.495358 tig0011794:-12522 None:intergenic
TAATGAGGCACTTGCTAGGA+TGG 0.505197 tig0011794:+9698 Msa1350690:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 tig0011794:+12237 Msa1350690:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 tig0011794:+11800 Msa1350690:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 tig0011794:+9801 Msa1350690:CDS
CCAATGACATTCTTTCTAGC+AGG 0.512517 tig0011794:+12522 Msa1350690:three_prime_UTR
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 tig0011794:+11670 Msa1350690:CDS
CATCAAATACAATATCATGT+TGG 0.518744 tig0011794:-9739 None:intergenic
GATATAAGCATGAGTGCTGC+TGG 0.520880 tig0011794:-11109 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 tig0011794:+11799 Msa1350690:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 tig0011794:-11791 None:intergenic
TGGTATGTCTCTGAATGTAT+TGG 0.523497 tig0011794:-12502 None:intergenic
GAGATTAATTTCCAAATCGT+GGG 0.530007 tig0011794:+12591 Msa1350690:three_prime_UTR
AGCACTCTCTGGATTGGCAA+TGG 0.530645 tig0011794:+12060 Msa1350690:CDS
AACATGATATTGTATTTGAT+GGG 0.530924 tig0011794:+9741 Msa1350690:CDS
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 tig0011794:+11178 Msa1350690:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 tig0011794:+11765 Msa1350690:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 tig0011794:+10902 Msa1350690:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 tig0011794:+12121 Msa1350690:CDS
TTGTTTGGCTGGTATAGCTG+AGG 0.550780 tig0011794:+11967 Msa1350690:CDS
TACGATAGAAGGCTTATAGT+TGG 0.551668 tig0011794:+12478 Msa1350690:three_prime_UTR
AAACTAATAATTTATGAAGG+AGG 0.553015 tig0011794:-12684 None:intergenic
ATTTATTGTTGAACCATCTG+AGG 0.553024 tig0011794:-11495 None:intergenic
CAATCCACAAATTGATGACA+AGG 0.554131 tig0011794:+12345 Msa1350690:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 tig0011794:-10866 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 tig0011794:-11712 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 tig0011794:+11501 Msa1350690:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 tig0011794:+9694 Msa1350690:intron
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 tig0011794:-9773 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 tig0011794:+11068 Msa1350690:CDS
ACATGTCACATGTGTTTCAC+GGG 0.566506 tig0011794:+12618 Msa1350690:three_prime_UTR
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 tig0011794:-10821 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 tig0011794:+12397 Msa1350690:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 tig0011794:+11674 Msa1350690:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 tig0011794:-12268 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 tig0011794:-11185 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 tig0011794:+11064 Msa1350690:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 tig0011794:+12450 Msa1350690:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 tig0011794:+11807 Msa1350690:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 tig0011794:+12159 Msa1350690:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.587940 tig0011794:+12369 Msa1350690:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 tig0011794:-9811 None:intergenic
AGAAAGAAAGCAATTCAGGC+AGG 0.591725 tig0011794:+11884 Msa1350690:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 tig0011794:+11564 Msa1350690:CDS
TCACGGGTGAGTGTTAGAAA+GGG 0.597203 tig0011794:+12634 Msa1350690:three_prime_UTR
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 tig0011794:+12294 Msa1350690:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 tig0011794:+12134 Msa1350690:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 tig0011794:-9577 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 tig0011794:-11307 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 tig0011794:+10848 Msa1350690:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 tig0011794:-11026 None:intergenic
TTTATGAAGGAGGAGTGCTA+TGG 0.614803 tig0011794:-12674 None:intergenic
GAACAAGATATAGCCTCAGA+TGG 0.621248 tig0011794:+11482 Msa1350690:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 tig0011794:-10839 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 tig0011794:+12400 Msa1350690:CDS
AATTAGTATGATACTCGTGA+AGG 0.628108 tig0011794:+12852 Msa1350690:three_prime_UTR
AGCAAGAAAGAATAAGACAG+TGG 0.634801 tig0011794:-11131 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 tig0011794:-11689 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 tig0011794:+12124 Msa1350690:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 tig0011794:+11573 Msa1350690:CDS
TGTCATGACACCCTAATAGT+CGG 0.637642 tig0011794:-12875 None:intergenic
ACTTGCAGCAATCCACCTGA+AGG 0.637785 tig0011794:+10827 Msa1350690:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 tig0011794:-11260 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 tig0011794:-11578 None:intergenic
ATCGCAATGTCTATTAACAT+CGG 0.651661 tig0011794:+11596 Msa1350690:CDS
ATTTCTGATAATATTAACAA+GGG 0.652732 tig0011794:+12160 Msa1350690:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 tig0011794:-10824 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 tig0011794:-11959 None:intergenic
ACTATTAGGGTGTCATGACA+CGG 0.659868 tig0011794:+12878 Msa1350690:three_prime_UTR
AAACCACAAAGAAGCAAGGG+TGG 0.667497 tig0011794:+9546 Msa1350690:CDS
GACCTTAAGATTATGACACA+TGG 0.668498 tig0011794:+12802 Msa1350690:three_prime_UTR
GCAATGTCTATTAACATCGG+AGG 0.673604 tig0011794:+11599 Msa1350690:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 tig0011794:+12137 Msa1350690:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 tig0011794:+10771 Msa1350690:intron
TGAAGAAAATGGTTCCAAGG+AGG 0.705179 tig0011794:+12297 Msa1350690:CDS
TAGAACCTATTCCAACACCT+AGG 0.705760 tig0011794:-9878 None:intergenic
CGTGAAACACATGTGACATG+TGG 0.714313 tig0011794:-12616 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 tig0011794:+11930 Msa1350690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - tig0011794:9413-9432 None:intergenic 0.0%
!!! AAATATTTTATTTATTATTT+TGG + tig0011794:12731-12750 Msa1350690:three_prime_UTR 0.0%
!! TGATTAATTAAAGATATATT+AGG + tig0011794:10310-10329 Msa1350690:intron 10.0%
!! TTAAATAAAATATTCAACTA+TGG + tig0011794:10548-10567 Msa1350690:intron 10.0%
!!! AATTAATATTCTGAAATTAT+TGG + tig0011794:10691-10710 Msa1350690:intron 10.0%
!! AAAAAACTAATAATTTATGA+AGG - tig0011794:12690-12709 None:intergenic 10.0%
!! TTAGATACCAATAAAAAAAA+TGG + tig0011794:9461-9480 Msa1350690:exon 15.0%
!! AAAATGAATATAATATTACC+AGG - tig0011794:9914-9933 None:intergenic 15.0%
!!! GGTAATATTATATTCATTTT+TGG + tig0011794:9914-9933 Msa1350690:intron 15.0%
!! ATATTATTAAGTCCAATTAT+GGG + tig0011794:9994-10013 Msa1350690:intron 15.0%
!! CTTCTTTCAAAAAAAAAAAA+AGG - tig0011794:10223-10242 None:intergenic 15.0%
!! TATGAAAAAGAATCATATAA+AGG + tig0011794:10635-10654 Msa1350690:intron 15.0%
!!! AATTTTCTTTTCTTTTAACT+TGG - tig0011794:10958-10977 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG - tig0011794:11715-11734 None:intergenic 15.0%
!! TTATCTTTGTAATACTTATA+TGG + tig0011794:11714-11733 Msa1350690:CDS 15.0%
!! ATTTCTGATAATATTAACAA+GGG + tig0011794:12160-12179 Msa1350690:CDS 15.0%
!!! AGTTGTTATTTTAAATTCTT+AGG + tig0011794:12760-12779 Msa1350690:three_prime_UTR 15.0%
!! ACCAATAAAAAAAATGGATA+AGG + tig0011794:9467-9486 Msa1350690:exon 20.0%
!!! TCCTTATCCATTTTTTTTAT+TGG - tig0011794:9471-9490 None:intergenic 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG + tig0011794:9631-9650 Msa1350690:intron 20.0%
!! ATCAAATACAATATCATGTT+GGG - tig0011794:9741-9760 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG + tig0011794:9741-9760 Msa1350690:CDS 20.0%
!! TTTATTGCAGATTCTTATAT+TGG + tig0011794:9849-9868 Msa1350690:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG - tig0011794:9961-9980 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG + tig0011794:9993-10012 Msa1350690:intron 20.0%
!! CTCGAATATTTAATTGATAT+AGG - tig0011794:10525-10544 None:intergenic 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG - tig0011794:10590-10609 None:intergenic 20.0%
!! ATTGGTATAATGAAAAAAGT+TGG + tig0011794:10709-10728 Msa1350690:intron 20.0%
!! AAACAAACAAACAAAAAAGA+AGG - tig0011794:10742-10761 None:intergenic 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG + tig0011794:10755-10774 Msa1350690:intron 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG - tig0011794:11227-11246 None:intergenic 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG - tig0011794:11268-11287 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG + tig0011794:11378-11397 Msa1350690:intron 20.0%
!! TGAAATCAAACGTTTAATAT+GGG - tig0011794:11421-11440 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG - tig0011794:11422-11441 None:intergenic 20.0%
!! CAATGGAATAACTTTAATAA+TGG - tig0011794:11564-11583 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG + tig0011794:11564-11583 Msa1350690:CDS 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG + tig0011794:11832-11851 Msa1350690:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG - tig0011794:12009-12028 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG + tig0011794:12159-12178 Msa1350690:CDS 20.0%
!! TCATTTCGACAAATATTTAT+GGG + tig0011794:12183-12202 Msa1350690:CDS 20.0%
!! AAACTAATAATTTATGAAGG+AGG - tig0011794:12687-12706 None:intergenic 20.0%
! GATAAGATACCAATGATAAA+AGG - tig0011794:9585-9604 None:intergenic 25.0%
! CATCAAATACAATATCATGT+TGG - tig0011794:9742-9761 None:intergenic 25.0%
! CAACATGATATTGTATTTGA+TGG + tig0011794:9740-9759 Msa1350690:CDS 25.0%
! GTATCATGGAATGAAAAAAA+AGG - tig0011794:9947-9966 None:intergenic 25.0%
! ATACAATTTACTCCCATAAT+TGG - tig0011794:10009-10028 None:intergenic 25.0%
! TCAAAATGTGACAATTCAAA+AGG - tig0011794:10088-10107 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG + tig0011794:10127-10146 Msa1350690:intron 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG + tig0011794:10754-10773 Msa1350690:intron 25.0%
! ATTTCATGTTCTTTAGCATT+TGG + tig0011794:10926-10945 Msa1350690:CDS 25.0%
!! TGTGTAATTTTCACATAAAG+AGG - tig0011794:11160-11179 None:intergenic 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG + tig0011794:11426-11445 Msa1350690:intron 25.0%
!! AAATAAAGCTTGTGTTATTC+AGG + tig0011794:11454-11473 Msa1350690:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG + tig0011794:11905-11924 Msa1350690:CDS 25.0%
! GTCATTTCGACAAATATTTA+TGG + tig0011794:12182-12201 Msa1350690:CDS 25.0%
!! AAATATTTATGGGTTATAGC+TGG + tig0011794:12193-12212 Msa1350690:CDS 25.0%
! TGTATTATTTAGTATGCAGT+TGG + tig0011794:12236-12255 Msa1350690:CDS 25.0%
! GTATTATTTAGTATGCAGTT+GGG + tig0011794:12237-12256 Msa1350690:CDS 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG + tig0011794:12439-12458 Msa1350690:CDS 25.0%
!!! AGGTTTCTAAGATTTTCTTA+TGG + tig0011794:12780-12799 Msa1350690:three_prime_UTR 25.0%
TGACAATTATAAAGGAACTG+AGG + tig0011794:10135-10154 Msa1350690:intron 30.0%
GACAATTATAAAGGAACTGA+GGG + tig0011794:10136-10155 Msa1350690:intron 30.0%
TAATCATACTTCAATGCAGA+AGG + tig0011794:10168-10187 Msa1350690:intron 30.0%
! AGAAGCATATATGTATAACC+TGG + tig0011794:10238-10257 Msa1350690:intron 30.0%
AATCAATATGTTGTAGATCC+AGG - tig0011794:10259-10278 None:intergenic 30.0%
GAACACTTGAATTGAATCTA+TGG + tig0011794:10332-10351 Msa1350690:intron 30.0%
! ATCTGAAACATAAAGAGAGA+CGG + tig0011794:10377-10396 Msa1350690:intron 30.0%
AGAAAGAATCACAAATCAAG+GGG - tig0011794:10421-10440 None:intergenic 30.0%
GAGAAAGAATCACAAATCAA+GGG - tig0011794:10422-10441 None:intergenic 30.0%
TGAGAAAGAATCACAAATCA+AGG - tig0011794:10423-10442 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG + tig0011794:10426-10445 Msa1350690:intron 30.0%
TTGAATATACGTACCAAGTT+TGG - tig0011794:10673-10692 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG + tig0011794:10899-10918 Msa1350690:CDS 30.0%
TTCCAATAACAATAGAGCTT+TGG + tig0011794:10976-10995 Msa1350690:CDS 30.0%
TTCCAAAGCTCTATTGTTAT+TGG - tig0011794:10981-11000 None:intergenic 30.0%
! CTTTGGAAATATTCTTCACT+TGG + tig0011794:10993-11012 Msa1350690:CDS 30.0%
GTATATATCCAAGATCATCT+TGG + tig0011794:11064-11083 Msa1350690:CDS 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG - tig0011794:11279-11298 None:intergenic 30.0%
ACATGCAAAAGCTATAAAGA+TGG - tig0011794:11332-11351 None:intergenic 30.0%
ATTTATTGTTGAACCATCTG+AGG - tig0011794:11498-11517 None:intergenic 30.0%
ATGGTTCAACAATAAATCGT+TGG + tig0011794:11501-11520 Msa1350690:CDS 30.0%
ATCGCAATGTCTATTAACAT+CGG + tig0011794:11596-11615 Msa1350690:CDS 30.0%
TGAAATGATATGTCTGTCTA+AGG - tig0011794:11651-11670 None:intergenic 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG + tig0011794:11670-11689 Msa1350690:CDS 30.0%
ATTATAGTAAAAGATCCTGC+CGG - tig0011794:11692-11711 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG + tig0011794:11765-11784 Msa1350690:CDS 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG + tig0011794:11861-11880 Msa1350690:CDS 30.0%
ATTGAAAACACTACTTCAAG+TGG + tig0011794:12121-12140 Msa1350690:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG + tig0011794:12369-12388 Msa1350690:CDS 30.0%
GAGTTAACTGAATTCAAGAA+TGG + tig0011794:12397-12416 Msa1350690:CDS 30.0%
TTAACTGAATTCAAGAATGG+TGG + tig0011794:12400-12419 Msa1350690:CDS 30.0%
TGAGATTAATTTCCAAATCG+TGG + tig0011794:12590-12609 Msa1350690:three_prime_UTR 30.0%
GAGATTAATTTCCAAATCGT+GGG + tig0011794:12591-12610 Msa1350690:three_prime_UTR 30.0%
ATCCATGTGTCATAATCTTA+AGG - tig0011794:12807-12826 None:intergenic 30.0%
AATTAGTATGATACTCGTGA+AGG + tig0011794:12852-12871 Msa1350690:three_prime_UTR 30.0%
ACAAAAACCACAAAGAAGCA+AGG + tig0011794:9542-9561 Msa1350690:CDS 35.0%
CAAAAACCACAAAGAAGCAA+GGG + tig0011794:9543-9562 Msa1350690:CDS 35.0%
GATACCAATGATAAAAGGCA+TGG - tig0011794:9580-9599 None:intergenic 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG + tig0011794:9683-9702 Msa1350690:intron 35.0%
! TCTTATATTGGTCGATTCCT+AGG + tig0011794:9861-9880 Msa1350690:CDS 35.0%
AGGTTCTATTATCAGTTTCC+TGG + tig0011794:9893-9912 Msa1350690:CDS 35.0%
GACAATTCAAAAGGAAGAGA+GGG - tig0011794:10079-10098 None:intergenic 35.0%
TGACAATTCAAAAGGAAGAG+AGG - tig0011794:10080-10099 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG + tig0011794:10346-10365 Msa1350690:intron 35.0%
ATTGTCTTGCCTAAGACATA+TGG - tig0011794:10455-10474 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG + tig0011794:10657-10676 Msa1350690:intron 35.0%
AATATACGTACCAAGTTTGG+TGG - tig0011794:10670-10689 None:intergenic 35.0%
GCGTTAATTCTGATAGGAAT+TGG + tig0011794:10893-10912 Msa1350690:CDS 35.0%
ATATCCAAGATCATCTTGGT+TGG + tig0011794:11068-11087 Msa1350690:CDS 35.0%
! TTTTCCAACCAAGATGATCT+TGG - tig0011794:11075-11094 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG + tig0011794:11076-11095 Msa1350690:CDS 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG + tig0011794:11082-11101 Msa1350690:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG - tig0011794:11134-11153 None:intergenic 35.0%
ATGATGGTAAAATTCAGGTG+AGG - tig0011794:11263-11282 None:intergenic 35.0%
TTGTTCCAACTGATAGACTA+AGG + tig0011794:11302-11321 Msa1350690:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG - tig0011794:11310-11329 None:intergenic 35.0%
TTATTCCATTGTGGTCAACA+GGG + tig0011794:11573-11592 Msa1350690:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG - tig0011794:11767-11786 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG + tig0011794:11764-11783 Msa1350690:CDS 35.0%
TATCAGTCCGAAGATAAGAA+TGG + tig0011794:11799-11818 Msa1350690:CDS 35.0%
ATCAGTCCGAAGATAAGAAT+GGG + tig0011794:11800-11819 Msa1350690:CDS 35.0%
AAGGAGAAAGAAAGCAATTC+AGG + tig0011794:11880-11899 Msa1350690:CDS 35.0%
TGTTGAAAATGTCTGCAATG+TGG + tig0011794:11930-11949 Msa1350690:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG - tig0011794:12037-12056 None:intergenic 35.0%
AAAAGAAGACACCAAGTTTC+CGG - tig0011794:12089-12108 None:intergenic 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG + tig0011794:12286-12305 Msa1350690:CDS 35.0%
! ACCATTTTCTTCACTCACTT+TGG - tig0011794:12290-12309 None:intergenic 35.0%
! TTCAGTTGAATTTTCCTCCT+TGG - tig0011794:12314-12333 None:intergenic 35.0%
! CAATCCACAAATTGATGACA+AGG + tig0011794:12345-12364 Msa1350690:CDS 35.0%
CTAACCTTGTCATCAATTTG+TGG - tig0011794:12352-12371 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG + tig0011794:12447-12466 Msa1350690:CDS 35.0%
TACGATAGAAGGCTTATAGT+TGG + tig0011794:12478-12497 Msa1350690:three_prime_UTR 35.0%
TGGTATGTCTCTGAATGTAT+TGG - tig0011794:12505-12524 None:intergenic 35.0%
! TCTAGCAGGAACTCTTTTAT+TGG + tig0011794:12536-12555 Msa1350690:three_prime_UTR 35.0%
GACCTTAAGATTATGACACA+TGG + tig0011794:12802-12821 Msa1350690:three_prime_UTR 35.0%
TGCTGCTGATGAAGAAGAAA+TGG + tig0011794:9512-9531 Msa1350690:CDS 40.0%
! GTCACCATGCCTTTTATCAT+TGG + tig0011794:9573-9592 Msa1350690:CDS 40.0%
GCAATAAAAGCAGCAACAAC+AGG - tig0011794:9837-9856 None:intergenic 40.0%
TAGAACCTATTCCAACACCT+AGG - tig0011794:9881-9900 None:intergenic 40.0%
GAATCTATGGCTAAAGTCTG+TGG + tig0011794:10345-10364 Msa1350690:intron 40.0%
ACTAGGACTCCATATGTCTT+AGG + tig0011794:10443-10462 Msa1350690:intron 40.0%
TATAGGGAATGTCAATGCTG+TGG + tig0011794:10771-10790 Msa1350690:intron 40.0%
TTTGCTGATATACAGCCTTC+AGG - tig0011794:10845-10864 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG + tig0011794:10856-10875 Msa1350690:CDS 40.0%
! AGTAACATTGCCATTTGACC+TGG - tig0011794:10869-10888 None:intergenic 40.0%
CTCTCTGCGTTAATTCTGAT+AGG + tig0011794:10887-10906 Msa1350690:CDS 40.0%
CTGATAGGAATTGGAAATGG+TGG + tig0011794:10902-10921 Msa1350690:CDS 40.0%
TGCTATGACAGCTATAGTTG+TGG - tig0011794:11029-11048 None:intergenic 40.0%
! AATTCAGGTGAGGTTTTCGA+TGG - tig0011794:11253-11272 None:intergenic 40.0%
GAACAAGATATAGCCTCAGA+TGG + tig0011794:11482-11501 Msa1350690:CDS 40.0%
GTTATTCCATTGTGGTCAAC+AGG + tig0011794:11572-11591 Msa1350690:CDS 40.0%
GCAATGTCTATTAACATCGG+AGG + tig0011794:11599-11618 Msa1350690:CDS 40.0%
CCAAGTCCCATTCTTATCTT+CGG - tig0011794:11809-11828 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG + tig0011794:11807-11826 Msa1350690:CDS 40.0%
AGAAAGAAAGCAATTCAGGC+AGG + tig0011794:11884-11903 Msa1350690:CDS 40.0%
ATACCAGCCAAACAAAGTGA+AGG - tig0011794:11962-11981 None:intergenic 40.0%
! GCTGAGGCATTCAATGTTAT+TGG + tig0011794:11983-12002 Msa1350690:CDS 40.0%
GAAAACACTACTTCAAGTGG+AGG + tig0011794:12124-12143 Msa1350690:CDS 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG + tig0011794:12133-12152 Msa1350690:CDS 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG + tig0011794:12134-12153 Msa1350690:CDS 40.0%
TTAGTATGCAGTTGGGCTTA+TGG + tig0011794:12244-12263 Msa1350690:CDS 40.0%
TTGGATACTTGATCAGCTGT+AGG - tig0011794:12271-12290 None:intergenic 40.0%
GAGTGAAGAAAATGGTTCCA+AGG + tig0011794:12294-12313 Msa1350690:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG + tig0011794:12297-12316 Msa1350690:CDS 40.0%
TGAATTCAAGAATGGTGGTC+AGG + tig0011794:12405-12424 Msa1350690:CDS 40.0%
TGAAGAAAATGGCTTGAAGG+AGG + tig0011794:12450-12469 Msa1350690:CDS 40.0%
AGGAGGAATAGTACGATAGA+AGG + tig0011794:12467-12486 Msa1350690:exon 40.0%
CCTGCTAGAAAGAATGTCAT+TGG - tig0011794:12525-12544 None:intergenic 40.0%
! CCAATGACATTCTTTCTAGC+AGG + tig0011794:12522-12541 Msa1350690:three_prime_UTR 40.0%
CACATGTCACATGTGTTTCA+CGG + tig0011794:12617-12636 Msa1350690:three_prime_UTR 40.0%
ACATGTCACATGTGTTTCAC+GGG + tig0011794:12618-12637 Msa1350690:three_prime_UTR 40.0%
!! TTTATGAAGGAGGAGTGCTA+TGG - tig0011794:12677-12696 None:intergenic 40.0%
TGTCATGACACCCTAATAGT+CGG - tig0011794:12878-12897 None:intergenic 40.0%
AAACCACAAAGAAGCAAGGG+TGG + tig0011794:9546-9565 Msa1350690:CDS 45.0%
! TAATGAGGCACTTGCTAGGA+TGG + tig0011794:9698-9717 Msa1350690:CDS 45.0%
GAGTAGCTGTAGCAAGATGA+AGG - tig0011794:9776-9795 None:intergenic 45.0%
TGTGAAATTTCCAGCTGCAG+AGG - tig0011794:9814-9833 None:intergenic 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG + tig0011794:9867-9886 Msa1350690:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG + tig0011794:9873-9892 Msa1350690:CDS 45.0%
GGCTGTATATCAGCAAAACC+AGG + tig0011794:10848-10867 Msa1350690:CDS 45.0%
GCTGTCATAGCAGCTCTATT+TGG + tig0011794:11037-11056 Msa1350690:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG - tig0011794:11112-11131 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG + tig0011794:11608-11627 Msa1350690:CDS 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG + tig0011794:11674-11693 Msa1350690:CDS 45.0%
ATCTTCGGACTGATACTCAC+TGG - tig0011794:11794-11813 None:intergenic 45.0%
CCGAAGATAAGAATGGGACT+TGG + tig0011794:11806-11825 Msa1350690:CDS 45.0%
GCTTGCACCTTCACTTTGTT+TGG + tig0011794:11952-11971 Msa1350690:CDS 45.0%
TTGTTTGGCTGGTATAGCTG+AGG + tig0011794:11967-11986 Msa1350690:CDS 45.0%
AGTGTTTCTTCAGCACTCTC+TGG + tig0011794:12049-12068 Msa1350690:CDS 45.0%
TTCTTCAGCACTCTCTGGAT+TGG + tig0011794:12054-12073 Msa1350690:CDS 45.0%
CGTGAAACACATGTGACATG+TGG - tig0011794:12619-12638 None:intergenic 45.0%
TTCACGGGTGAGTGTTAGAA+AGG + tig0011794:12633-12652 Msa1350690:three_prime_UTR 45.0%
TCACGGGTGAGTGTTAGAAA+GGG + tig0011794:12634-12653 Msa1350690:three_prime_UTR 45.0%
!!! ATCATTTTTTAATTTTAAAA+AGG - tig0011794:10599-10618 None:intergenic 5.0%
AGACCACCCTTGCTTCTTTG+TGG - tig0011794:9552-9571 None:intergenic 50.0%
! CAGCTAATGAGGCACTTGCT+AGG + tig0011794:9694-9713 Msa1350690:intron 50.0%
CTTCTCATATCCTCTGCAGC+TGG + tig0011794:9801-9820 Msa1350690:CDS 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG - tig0011794:10827-10846 None:intergenic 50.0%
ACTTGCAGCAATCCACCTGA+AGG + tig0011794:10827-10846 Msa1350690:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG - tig0011794:10842-10861 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG + tig0011794:11178-11197 Msa1350690:CDS 50.0%
TGCAAAACCAGTGAGCAAGC+TGG - tig0011794:11188-11207 None:intergenic 50.0%
! GCACCTTCACTTTGTTTGGC+TGG + tig0011794:11956-11975 Msa1350690:CDS 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG + tig0011794:12060-12079 Msa1350690:CDS 50.0%
CAAGTGGAGGAAAAGATGGG+TGG + tig0011794:12137-12156 Msa1350690:CDS 50.0%
GACATGTGGTTCCCACGATT+TGG - tig0011794:12605-12624 None:intergenic 50.0%
ACTCGTGAAGGCCGACTATT+AGG + tig0011794:12864-12883 Msa1350690:three_prime_UTR 50.0%
CTCGTGAAGGCCGACTATTA+GGG + tig0011794:12865-12884 Msa1350690:three_prime_UTR 50.0%
CTTGCTAGGATGGCAAGTGC+TGG + tig0011794:9708-9727 Msa1350690:CDS 55.0%
!! AGGATGGCAAGTGCTGGACT+TGG + tig0011794:9714-9733 Msa1350690:CDS 55.0%
!! GGTGGATTGCTGCAAGTAGG+AGG - tig0011794:10824-10843 None:intergenic 55.0%
GCGATCCCTGTTGACCACAA+TGG - tig0011794:11581-11600 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG + tig0011794:12067-12086 Msa1350690:CDS 55.0%
AAGTAGGAGGCTGCGTCGCT+GGG - tig0011794:10811-10830 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG + tig0011794:12075-12094 Msa1350690:CDS 60.0%
AGGCTGCGTCGCTGGGATCA+TGG - tig0011794:10804-10823 None:intergenic 65.0%
CAAGTAGGAGGCTGCGTCGC+TGG - tig0011794:10812-10831 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0011794 gene 9392 12899 9392 ID=Msa1350690;Name=Msa1350690
tig0011794 mRNA 9392 12899 9392 ID=Msa1350690-mRNA-1;Parent=Msa1350690;Name=Msa1350690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=88|1|1|1|1|1|4|422|636
tig0011794 exon 9392 9594 9392 ID=Msa1350690-mRNA-1:exon:7522;Parent=Msa1350690-mRNA-1
tig0011794 exon 9697 9914 9697 ID=Msa1350690-mRNA-1:exon:7523;Parent=Msa1350690-mRNA-1
tig0011794 exon 10776 11323 10776 ID=Msa1350690-mRNA-1:exon:7524;Parent=Msa1350690-mRNA-1
tig0011794 exon 11448 12899 11448 ID=Msa1350690-mRNA-1:exon:7525;Parent=Msa1350690-mRNA-1
tig0011794 five_prime_UTR 9392 9479 9392 ID=Msa1350690-mRNA-1:five_prime_utr;Parent=Msa1350690-mRNA-1
tig0011794 CDS 9480 9594 9480 ID=Msa1350690-mRNA-1:cds;Parent=Msa1350690-mRNA-1
tig0011794 CDS 9697 9914 9697 ID=Msa1350690-mRNA-1:cds;Parent=Msa1350690-mRNA-1
tig0011794 CDS 10776 11323 10776 ID=Msa1350690-mRNA-1:cds;Parent=Msa1350690-mRNA-1
tig0011794 CDS 11448 12477 11448 ID=Msa1350690-mRNA-1:cds;Parent=Msa1350690-mRNA-1
tig0011794 three_prime_UTR 12478 12899 12478 ID=Msa1350690-mRNA-1:three_prime_utr;Parent=Msa1350690-mRNA-1
Gene Sequence

>Msa1350690

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGCTAATGAGGCACTTGCTAGGATGGCAAGTGCTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCGACGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCATTTGGTGCAGACCAAGTTAAAAGAAAAGAAAATTCCAATAACAATAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCATCGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTTTCTAAATAAAGCTTGTGTTATTCAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCTATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAAAGCAATTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAGGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAAGGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>Msa1350690

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASAGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPATQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRKENSNNNRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPSKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIQDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKKAIQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSKEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE*