Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001710 | XP_003630631.1 | 93.493 | 292 | 13 | 1 | 1 | 292 | 1 | 286 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001710 | sp|O65896|CDA1_ARATH | 57.003 | 307 | 108 | 5 | 1 | 292 | 1 | 298 | 7.57e-116 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001710 | Msa0072420 | -0.824676 | 7.094337e-54 | -8.615850e-47 |
| Msa0001710 | Msa0079070 | -0.807818 | 4.197115e-50 | -8.615850e-47 |
| Msa0001710 | Msa0083280 | -0.809764 | 1.610312e-50 | -8.615850e-47 |
| Msa0001710 | Msa0123560 | -0.819126 | 1.368169e-52 | -8.615850e-47 |
| Msa0001710 | Msa0194950 | 0.820976 | 5.160360e-53 | -8.615850e-47 |
| Msa0001710 | Msa0259240 | -0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0001710 | Msa0315440 | 0.818466 | 1.932055e-52 | -8.615850e-47 |
| Msa0001710 | Msa0387820 | -0.800811 | 1.209889e-48 | -8.615850e-47 |
| Msa0001710 | Msa0398670 | -0.816399 | 5.642592e-52 | -8.615850e-47 |
| Msa0001710 | Msa0512340 | -0.820046 | 8.433871e-53 | -8.615850e-47 |
| Msa0001710 | Msa0542290 | -0.801474 | 8.852532e-49 | -8.615850e-47 |
| Msa0001710 | Msa0609410 | 0.803428 | 3.503092e-49 | -8.615850e-47 |
| Msa0001710 | Msa0709400 | -0.806675 | 7.332437e-50 | -8.615850e-47 |
| Msa0001710 | Msa1167340 | -0.803593 | 3.237763e-49 | -8.615850e-47 |
| Msa0001710 | Msa1254730 | -0.808994 | 2.355552e-50 | -8.615850e-47 |
| Msa0001710 | Msa1305810 | -0.804090 | 2.552150e-49 | -8.615850e-47 |
| Msa0001710 | Msa1434420 | 0.851494 | 8.558921e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001710 | MtrunA17_Chr8g0389191 | 93.493 | 292 | 13 | 1 | 1 | 292 | 1 | 286 | 0.0 | 555 |
| Msa0001710 | MtrunA17_Chr6g0488531 | 65.385 | 104 | 36 | 0 | 1 | 104 | 1 | 104 | 1.22e-41 | 142 |
| Msa0001710 | MtrunA17_Chr6g0488531 | 57.471 | 87 | 34 | 1 | 210 | 293 | 105 | 191 | 3.09e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001710 | AT2G19570.1 | 57.003 | 307 | 108 | 5 | 1 | 292 | 1 | 298 | 7.69e-117 | 338 |
| Msa0001710 | AT4G29600.1 | 49.020 | 306 | 133 | 7 | 2 | 295 | 5 | 299 | 2.73e-90 | 271 |
| Msa0001710 | AT4G29610.1 | 50.365 | 274 | 120 | 5 | 28 | 292 | 21 | 287 | 9.05e-89 | 266 |
| Msa0001710 | AT4G29620.1 | 45.395 | 304 | 139 | 7 | 2 | 295 | 26 | 312 | 5.33e-78 | 241 |
| Msa0001710 | AT4G29640.1 | 43.206 | 287 | 147 | 7 | 16 | 292 | 13 | 293 | 2.57e-64 | 206 |
| Msa0001710 | AT4G29630.1 | 48.918 | 231 | 97 | 5 | 2 | 222 | 4 | 223 | 4.59e-62 | 196 |
| Msa0001710 | AT4G29570.1 | 42.446 | 278 | 141 | 7 | 26 | 292 | 23 | 292 | 5.41e-58 | 188 |
| Msa0001710 | AT4G29650.1 | 38.062 | 289 | 127 | 7 | 6 | 292 | 7 | 245 | 8.04e-49 | 163 |
| Msa0001710 | AT4G29580.1 | 39.726 | 292 | 151 | 10 | 4 | 282 | 7 | 286 | 1.05e-48 | 164 |
| Msa0001710 | AT4G29580.2 | 39.726 | 292 | 151 | 10 | 4 | 282 | 7 | 286 | 1.24e-47 | 165 |
Find 112 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGACAGAGAAGTGAAATT+TGG | 0.221554 | 1_1:+3409812 | None:intergenic |
| GACAGCTCCGACGTGGAAAT+TGG | 0.275635 | 1_1:+3410069 | None:intergenic |
| CGGGTGCTCCGCGGATTTCT+TGG | 0.278140 | 1_1:+3409867 | None:intergenic |
| TCCTAGTTTGGGTCCTCTTC+AGG | 0.279807 | 1_1:-3409507 | Msa0001710:CDS |
| TGAAGATTTGGCCATGGATT+TGG | 0.298830 | 1_1:+3410162 | None:intergenic |
| TGGGTGGTCGGGCGAGGGAT+TGG | 0.308461 | 1_1:+3410095 | None:intergenic |
| AAAGTCTGCAATTGACATTT+AGG | 0.308869 | 1_1:+3409353 | None:intergenic |
| GGTAATGATGATTTGAATAT+CGG | 0.323221 | 1_1:+3409847 | None:intergenic |
| GGGTGGTCGGGCGAGGGATT+GGG | 0.334841 | 1_1:+3410096 | None:intergenic |
| GGCGGCGTTTAATCCTAGTT+TGG | 0.341522 | 1_1:-3409519 | Msa0001710:CDS |
| CCAGATGGTGAATTACTATA+AGG | 0.358174 | 1_1:+3409596 | None:intergenic |
| GAGAGTGAGGGATGAAGATT+TGG | 0.361013 | 1_1:+3410150 | None:intergenic |
| TCCTCTTCAGGCTGCGGTGG+TGG | 0.366749 | 1_1:-3409495 | Msa0001710:CDS |
| GCGGCGTTTAATCCTAGTTT+GGG | 0.380242 | 1_1:-3409518 | Msa0001710:CDS |
| CCTTATAGTAATTCACCATC+TGG | 0.384670 | 1_1:-3409596 | Msa0001710:CDS |
| GAGACAGAGAAGTGAAATTT+GGG | 0.388256 | 1_1:+3409813 | None:intergenic |
| GGATTTCTTGGAAGAATTGC+CGG | 0.395040 | 1_1:+3409879 | None:intergenic |
| GAATTGCCGGCAGTGGCCAC+AGG | 0.404218 | 1_1:+3409892 | None:intergenic |
| CCGGCAGTGGCCACAGGGAG+CGG | 0.421277 | 1_1:+3409898 | None:intergenic |
| GCGTTTATTGTCGCCGGCGG+CGG | 0.423175 | 1_1:-3409473 | Msa0001710:CDS |
| GATAGTTTCTCTGTTGTTAA+CGG | 0.423842 | 1_1:+3409698 | None:intergenic |
| GACGGCAAATGAGTGGAGAT+TGG | 0.429471 | 1_1:+3409925 | None:intergenic |
| TGACAAGTGATGGGAGGAGT+TGG | 0.430025 | 1_1:+3410125 | None:intergenic |
| GGAGGAGTTGGGTGAGAGTG+AGG | 0.430382 | 1_1:+3410137 | None:intergenic |
| TTTGGCCATGGATTTGGCTT+CGG | 0.430920 | 1_1:+3410168 | None:intergenic |
| CCATCGGGTCGGATCTTAAT+CGG | 0.432605 | 1_1:-3410037 | Msa0001710:CDS |
| TGGAGATGGGTGGTCGGGCG+AGG | 0.432898 | 1_1:+3410089 | None:intergenic |
| TCGGGCGAGGGATTGGGCGG+AGG | 0.439797 | 1_1:+3410102 | None:intergenic |
| AGTGAAATTTGGGTCAGATT+CGG | 0.443529 | 1_1:+3409823 | None:intergenic |
| GAAGCTAAAGATTGCGGCTA+TGG | 0.452033 | 1_1:-3409642 | Msa0001710:CDS |
| GAAATTGGAGATGGGTGGTC+GGG | 0.455841 | 1_1:+3410084 | None:intergenic |
| CCGCTCCCTGTGGCCACTGC+CGG | 0.461973 | 1_1:-3409898 | Msa0001710:CDS |
| AGTGATGAAGAGGGAGGCCT+GGG | 0.468579 | 1_1:+3409999 | None:intergenic |
| TAAAGGATCTTATGTTGAAT+CGG | 0.470270 | 1_1:-3409540 | Msa0001710:CDS |
| CTTGGAAGAATTGCCGGCAG+TGG | 0.473200 | 1_1:+3409885 | None:intergenic |
| TGGGCGGAGGTGACAAGTGA+TGG | 0.473273 | 1_1:+3410115 | None:intergenic |
| GACAAGTGATGGGAGGAGTT+GGG | 0.474173 | 1_1:+3410126 | None:intergenic |
| GAGAAACTGTTCGGCGTGGA+TGG | 0.474486 | 1_1:+3409976 | None:intergenic |
| ACGGCAAATGAGTGGAGATT+GGG | 0.480319 | 1_1:+3409926 | None:intergenic |
| GAGTGATGAAGAGGGAGGCC+TGG | 0.482748 | 1_1:+3409998 | None:intergenic |
| ATCACCGTTGCAAACGCCAT+TGG | 0.486585 | 1_1:+3409676 | None:intergenic |
| ACCATCTGGGATGGCGATTG+TGG | 0.487559 | 1_1:-3409582 | Msa0001710:CDS |
| GCCACAGGGAGCGGCGGAGA+CGG | 0.489161 | 1_1:+3409907 | None:intergenic |
| GGCCATGGATTTGGCTTCGG+TGG | 0.493035 | 1_1:+3410171 | None:intergenic |
| AATTTCCACGTCGGAGCTGT+CGG | 0.496820 | 1_1:-3410067 | Msa0001710:CDS |
| AAAACAGAGGAGCGTGTTGA+GGG | 0.498221 | 1_1:+3409753 | None:intergenic |
| CCGATTAAGATCCGACCCGA+TGG | 0.499542 | 1_1:+3410037 | None:intergenic |
| CGGAAGAAGCTTTAACCCGT+TGG | 0.502023 | 1_1:+3409718 | None:intergenic |
| GCCACCACCGCAGCCTGAAG+AGG | 0.504864 | 1_1:+3409494 | None:intergenic |
| GGGTCCTCTTCAGGCTGCGG+TGG | 0.509491 | 1_1:-3409498 | Msa0001710:CDS |
| TGGTCGGGCGAGGGATTGGG+CGG | 0.511129 | 1_1:+3410099 | None:intergenic |
| GTAATGATGATTTGAATATC+GGG | 0.511400 | 1_1:+3409848 | None:intergenic |
| CGATTAAGATCCGACCCGAT+GGG | 0.512765 | 1_1:+3410038 | None:intergenic |
| GGAGATGGGTGGTCGGGCGA+GGG | 0.514417 | 1_1:+3410090 | None:intergenic |
| ATTTGTGAGGAGAAACTGTT+CGG | 0.519896 | 1_1:+3409967 | None:intergenic |
| GGAAATTGGAGATGGGTGGT+CGG | 0.522634 | 1_1:+3410083 | None:intergenic |
| GTGGTGGCGTTTATTGTCGC+CGG | 0.545550 | 1_1:-3409479 | Msa0001710:CDS |
| TTTGGGTCCTCTTCAGGCTG+CGG | 0.545667 | 1_1:-3409501 | Msa0001710:CDS |
| TCCGACGTGGAAATTGGAGA+TGG | 0.546314 | 1_1:+3410075 | None:intergenic |
| TCGTGTGGTCCAAATCTGTA+AGG | 0.546455 | 1_1:+3409782 | None:intergenic |
| GAGGGATGAAGATTTGGCCA+TGG | 0.547112 | 1_1:+3410156 | None:intergenic |
| GAGGAGTTGGGTGAGAGTGA+GGG | 0.549562 | 1_1:+3410138 | None:intergenic |
| GGCCATTGATCATTCATCAA+AGG | 0.550701 | 1_1:+3409322 | None:intergenic |
| GAGATTGGGTTCGTCGTGGA+GGG | 0.551352 | 1_1:+3409940 | None:intergenic |
| GGGCGGAGGTGACAAGTGAT+GGG | 0.554215 | 1_1:+3410116 | None:intergenic |
| TGAGATCGTGGGTGCTGTGT+TGG | 0.554657 | 1_1:-3409441 | Msa0001710:CDS |
| AGCTGTCGGATTATCCCCAT+CGG | 0.556466 | 1_1:-3410053 | Msa0001710:CDS |
| GCTAAAGATTGCGGCTATGG+AGG | 0.558173 | 1_1:-3409639 | Msa0001710:CDS |
| ATGGCGATTGTGGATTGTAA+TGG | 0.559387 | 1_1:-3409572 | Msa0001710:CDS |
| GATCGTGGGTGCTGTGTTGG+TGG | 0.562554 | 1_1:-3409438 | Msa0001710:CDS |
| AGCTTTAACCCGTTGGTGCG+TGG | 0.562632 | 1_1:+3409725 | None:intergenic |
| GGAGTCAATGTCGAATTCCC+AGG | 0.562922 | 1_1:-3410016 | Msa0001710:CDS |
| GGAGATTGGGTTCGTCGTGG+AGG | 0.563710 | 1_1:+3409939 | None:intergenic |
| CGGCGGAGACGGCAAATGAG+TGG | 0.568502 | 1_1:+3409918 | None:intergenic |
| CGGTAAGTATGATGAGATCG+TGG | 0.575614 | 1_1:-3409453 | Msa0001710:CDS |
| CTTATAGTAATTCACCATCT+GGG | 0.578783 | 1_1:-3409595 | Msa0001710:CDS |
| AGCCACCGAAGCCAAATCCA+TGG | 0.582069 | 1_1:-3410173 | Msa0001710:CDS |
| CGTGGATGGAGTGATGAAGA+GGG | 0.588357 | 1_1:+3409990 | None:intergenic |
| CTATCCAATGGCGTTTGCAA+CGG | 0.589084 | 1_1:-3409680 | Msa0001710:CDS |
| GCCTGAAGAGGACCCAAACT+AGG | 0.589128 | 1_1:+3409506 | None:intergenic |
| CTCATCATACTTACCGCCGC+CGG | 0.591519 | 1_1:+3409460 | None:intergenic |
| CCGACGTGGAAATTGGAGAT+GGG | 0.591562 | 1_1:+3410076 | None:intergenic |
| GAAATTTGGGTCAGATTCGG+AGG | 0.592488 | 1_1:+3409826 | None:intergenic |
| TAGTAATTCACCATCTGGGA+TGG | 0.593503 | 1_1:-3409591 | Msa0001710:CDS |
| GCCGTCTCCGCCGCTCCCTG+TGG | 0.593913 | 1_1:-3409908 | Msa0001710:CDS |
| GCGTGGATGGAGTGATGAAG+AGG | 0.599358 | 1_1:+3409989 | None:intergenic |
| GCTGTCGGATTATCCCCATC+GGG | 0.602496 | 1_1:-3410052 | Msa0001710:CDS |
| GCAGTGGCCACAGGGAGCGG+CGG | 0.603868 | 1_1:+3409901 | None:intergenic |
| AATTGCCGGCAGTGGCCACA+GGG | 0.607932 | 1_1:+3409893 | None:intergenic |
| CGGAGGTGACAAGTGATGGG+AGG | 0.610703 | 1_1:+3410119 | None:intergenic |
| TCCACAATCGCCATCCCAGA+TGG | 0.613085 | 1_1:+3409581 | None:intergenic |
| CGGAGCTATGGTGAAACAAG+AGG | 0.615878 | 1_1:-3409408 | Msa0001710:CDS |
| GGTAAGTATGATGAGATCGT+GGG | 0.617309 | 1_1:-3409452 | Msa0001710:CDS |
| GATTAAGATCCGACCCGATG+GGG | 0.619338 | 1_1:+3410039 | None:intergenic |
| GGTGGAGAAAGACGGAGCTA+TGG | 0.623714 | 1_1:-3409420 | Msa0001710:CDS |
| TCGGATTATCCCCATCGGGT+CGG | 0.633245 | 1_1:-3410048 | Msa0001710:CDS |
| GTGGCGTTTATTGTCGCCGG+CGG | 0.634221 | 1_1:-3409476 | Msa0001710:CDS |
| GGAGCTATGGTGAAACAAGA+GGG | 0.637476 | 1_1:-3409407 | Msa0001710:CDS |
| TCATGAGAAGCTAAAGATTG+CGG | 0.637485 | 1_1:-3409648 | Msa0001710:CDS |
| TTTGAATATCGGGTGCTCCG+CGG | 0.650008 | 1_1:+3409858 | None:intergenic |
| AGTGGAGATTGGGTTCGTCG+TGG | 0.655961 | 1_1:+3409936 | None:intergenic |
| ACGTGGAAATTGGAGATGGG+TGG | 0.657179 | 1_1:+3410079 | None:intergenic |
| ACAACAGAGAAACTATCCAA+TGG | 0.665950 | 1_1:-3409692 | Msa0001710:CDS |
| AGGATCTTATGTTGAATCGG+CGG | 0.667327 | 1_1:-3409537 | Msa0001710:CDS |
| CAATTCTTCCAAGAAATCCG+CGG | 0.668096 | 1_1:-3409875 | Msa0001710:CDS |
| ATAATCCGACAGCTCCGACG+TGG | 0.676269 | 1_1:+3410062 | None:intergenic |
| CCCATCTCCAATTTCCACGT+CGG | 0.677245 | 1_1:-3410076 | Msa0001710:CDS |
| GCTGTGTTGGTGGAGAAAGA+CGG | 0.682938 | 1_1:-3409428 | Msa0001710:CDS |
| TGAGGAGAAACTGTTCGGCG+TGG | 0.685610 | 1_1:+3409972 | None:intergenic |
| CGTGGAGGGAGAGATTTGTG+AGG | 0.692173 | 1_1:+3409954 | None:intergenic |
| GGATGGAGTGATGAAGAGGG+AGG | 0.695700 | 1_1:+3409993 | None:intergenic |
| TGTTGAGGGAGAAGATCGTG+TGG | 0.703420 | 1_1:+3409767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATGGAAAAATCTATAA+AGG | - | chr1_1:3409973-3409992 | Msa0001710:CDS | 20.0% |
| !!! | TGTAATGGAAAAATCTATAA+AGG | - | chr1_1:3409973-3409992 | Msa0001710:CDS | 20.0% |
| ! | GTAATGATGATTTGAATATC+GGG | + | chr1_1:3409685-3409704 | None:intergenic | 25.0% |
| ! | GGTAATGATGATTTGAATAT+CGG | + | chr1_1:3409686-3409705 | None:intergenic | 25.0% |
| ! | TAAAGGATCTTATGTTGAAT+CGG | - | chr1_1:3409990-3410009 | Msa0001710:CDS | 25.0% |
| ! | GTAATGATGATTTGAATATC+GGG | + | chr1_1:3409685-3409704 | None:intergenic | 25.0% |
| ! | GGTAATGATGATTTGAATAT+CGG | + | chr1_1:3409686-3409705 | None:intergenic | 25.0% |
| ! | TAAAGGATCTTATGTTGAAT+CGG | - | chr1_1:3409990-3410009 | Msa0001710:CDS | 25.0% |
| ! | CATTTTCTTCCTTACAGATT+TGG | - | chr1_1:3409739-3409758 | Msa0001710:CDS | 30.0% |
| GATAGTTTCTCTGTTGTTAA+CGG | + | chr1_1:3409835-3409854 | None:intergenic | 30.0% | |
| CTTATAGTAATTCACCATCT+GGG | - | chr1_1:3409935-3409954 | Msa0001710:CDS | 30.0% | |
| AAAGTCTGCAATTGACATTT+AGG | + | chr1_1:3410180-3410199 | None:intergenic | 30.0% | |
| ! | CATTTTCTTCCTTACAGATT+TGG | - | chr1_1:3409739-3409758 | Msa0001710:CDS | 30.0% |
| GATAGTTTCTCTGTTGTTAA+CGG | + | chr1_1:3409835-3409854 | None:intergenic | 30.0% | |
| CTTATAGTAATTCACCATCT+GGG | - | chr1_1:3409935-3409954 | Msa0001710:CDS | 30.0% | |
| AAAGTCTGCAATTGACATTT+AGG | + | chr1_1:3410180-3410199 | None:intergenic | 30.0% | |
| ATTTGTGAGGAGAAACTGTT+CGG | + | chr1_1:3409566-3409585 | None:intergenic | 35.0% | |
| AGTGAAATTTGGGTCAGATT+CGG | + | chr1_1:3409710-3409729 | None:intergenic | 35.0% | |
| GAGACAGAGAAGTGAAATTT+GGG | + | chr1_1:3409720-3409739 | None:intergenic | 35.0% | |
| TGAGACAGAGAAGTGAAATT+TGG | + | chr1_1:3409721-3409740 | None:intergenic | 35.0% | |
| ACAACAGAGAAACTATCCAA+TGG | - | chr1_1:3409838-3409857 | Msa0001710:CDS | 35.0% | |
| TCATGAGAAGCTAAAGATTG+CGG | - | chr1_1:3409882-3409901 | Msa0001710:CDS | 35.0% | |
| CCAGATGGTGAATTACTATA+AGG | + | chr1_1:3409937-3409956 | None:intergenic | 35.0% | |
| CCTTATAGTAATTCACCATC+TGG | - | chr1_1:3409934-3409953 | Msa0001710:CDS | 35.0% | |
| ATTTGTGAGGAGAAACTGTT+CGG | + | chr1_1:3409566-3409585 | None:intergenic | 35.0% | |
| AGTGAAATTTGGGTCAGATT+CGG | + | chr1_1:3409710-3409729 | None:intergenic | 35.0% | |
| GAGACAGAGAAGTGAAATTT+GGG | + | chr1_1:3409720-3409739 | None:intergenic | 35.0% | |
| TGAGACAGAGAAGTGAAATT+TGG | + | chr1_1:3409721-3409740 | None:intergenic | 35.0% | |
| ACAACAGAGAAACTATCCAA+TGG | - | chr1_1:3409838-3409857 | Msa0001710:CDS | 35.0% | |
| TCATGAGAAGCTAAAGATTG+CGG | - | chr1_1:3409882-3409901 | Msa0001710:CDS | 35.0% | |
| CCAGATGGTGAATTACTATA+AGG | + | chr1_1:3409937-3409956 | None:intergenic | 35.0% | |
| CCTTATAGTAATTCACCATC+TGG | - | chr1_1:3409934-3409953 | Msa0001710:CDS | 35.0% | |
| GTGGCTTCGATAACAAAAAC+GGG | + | chr1_1:3409343-3409362 | None:intergenic | 40.0% | |
| GGTGGCTTCGATAACAAAAA+CGG | + | chr1_1:3409344-3409363 | None:intergenic | 40.0% | |
| TGAAGATTTGGCCATGGATT+TGG | + | chr1_1:3409371-3409390 | None:intergenic | 40.0% | |
| GGATTTCTTGGAAGAATTGC+CGG | + | chr1_1:3409654-3409673 | None:intergenic | 40.0% | |
| CAATTCTTCCAAGAAATCCG+CGG | - | chr1_1:3409655-3409674 | Msa0001710:CDS | 40.0% | |
| TAGTAATTCACCATCTGGGA+TGG | - | chr1_1:3409939-3409958 | Msa0001710:CDS | 40.0% | |
| ! | ATGGCGATTGTGGATTGTAA+TGG | - | chr1_1:3409958-3409977 | Msa0001710:CDS | 40.0% |
| AGGATCTTATGTTGAATCGG+CGG | - | chr1_1:3409993-3410012 | Msa0001710:CDS | 40.0% | |
| GGTAAGTATGATGAGATCGT+GGG | - | chr1_1:3410078-3410097 | Msa0001710:CDS | 40.0% | |
| GTGGCTTCGATAACAAAAAC+GGG | + | chr1_1:3409343-3409362 | None:intergenic | 40.0% | |
| GGTGGCTTCGATAACAAAAA+CGG | + | chr1_1:3409344-3409363 | None:intergenic | 40.0% | |
| TGAAGATTTGGCCATGGATT+TGG | + | chr1_1:3409371-3409390 | None:intergenic | 40.0% | |
| GGATTTCTTGGAAGAATTGC+CGG | + | chr1_1:3409654-3409673 | None:intergenic | 40.0% | |
| CAATTCTTCCAAGAAATCCG+CGG | - | chr1_1:3409655-3409674 | Msa0001710:CDS | 40.0% | |
| TAGTAATTCACCATCTGGGA+TGG | - | chr1_1:3409939-3409958 | Msa0001710:CDS | 40.0% | |
| ! | ATGGCGATTGTGGATTGTAA+TGG | - | chr1_1:3409958-3409977 | Msa0001710:CDS | 40.0% |
| AGGATCTTATGTTGAATCGG+CGG | - | chr1_1:3409993-3410012 | Msa0001710:CDS | 40.0% | |
| GGTAAGTATGATGAGATCGT+GGG | - | chr1_1:3410078-3410097 | Msa0001710:CDS | 40.0% | |
| ! | TTTGGCCATGGATTTGGCTT+CGG | + | chr1_1:3409365-3409384 | None:intergenic | 45.0% |
| GAGAGTGAGGGATGAAGATT+TGG | + | chr1_1:3409383-3409402 | None:intergenic | 45.0% | |
| ACGGCAAATGAGTGGAGATT+GGG | + | chr1_1:3409607-3409626 | None:intergenic | 45.0% | |
| GAAATTTGGGTCAGATTCGG+AGG | + | chr1_1:3409707-3409726 | None:intergenic | 45.0% | |
| TCGTGTGGTCCAAATCTGTA+AGG | + | chr1_1:3409751-3409770 | None:intergenic | 45.0% | |
| ! | AAAACAGAGGAGCGTGTTGA+GGG | + | chr1_1:3409780-3409799 | None:intergenic | 45.0% |
| ! | AAAAACAGAGGAGCGTGTTG+AGG | + | chr1_1:3409781-3409800 | None:intergenic | 45.0% |
| ! | TCAACACGCTCCTCTGTTTT+TGG | - | chr1_1:3409780-3409799 | Msa0001710:CDS | 45.0% |
| !!! | TTTTTGGAACCACGCACCAA+CGG | - | chr1_1:3409796-3409815 | Msa0001710:CDS | 45.0% |
| CTATCCAATGGCGTTTGCAA+CGG | - | chr1_1:3409850-3409869 | Msa0001710:CDS | 45.0% | |
| GAAGCTAAAGATTGCGGCTA+TGG | - | chr1_1:3409888-3409907 | Msa0001710:CDS | 45.0% | |
| GCGGCGTTTAATCCTAGTTT+GGG | - | chr1_1:3410012-3410031 | Msa0001710:CDS | 45.0% | |
| CGGTAAGTATGATGAGATCG+TGG | - | chr1_1:3410077-3410096 | Msa0001710:CDS | 45.0% | |
| GGAGCTATGGTGAAACAAGA+GGG | - | chr1_1:3410123-3410142 | Msa0001710:CDS | 45.0% | |
| ! | TTTGGCCATGGATTTGGCTT+CGG | + | chr1_1:3409365-3409384 | None:intergenic | 45.0% |
| GAGAGTGAGGGATGAAGATT+TGG | + | chr1_1:3409383-3409402 | None:intergenic | 45.0% | |
| ACGGCAAATGAGTGGAGATT+GGG | + | chr1_1:3409607-3409626 | None:intergenic | 45.0% | |
| GAAATTTGGGTCAGATTCGG+AGG | + | chr1_1:3409707-3409726 | None:intergenic | 45.0% | |
| TCGTGTGGTCCAAATCTGTA+AGG | + | chr1_1:3409751-3409770 | None:intergenic | 45.0% | |
| ! | AAAACAGAGGAGCGTGTTGA+GGG | + | chr1_1:3409780-3409799 | None:intergenic | 45.0% |
| ! | AAAAACAGAGGAGCGTGTTG+AGG | + | chr1_1:3409781-3409800 | None:intergenic | 45.0% |
| ! | TCAACACGCTCCTCTGTTTT+TGG | - | chr1_1:3409780-3409799 | Msa0001710:CDS | 45.0% |
| !!! | TTTTTGGAACCACGCACCAA+CGG | - | chr1_1:3409796-3409815 | Msa0001710:CDS | 45.0% |
| CTATCCAATGGCGTTTGCAA+CGG | - | chr1_1:3409850-3409869 | Msa0001710:CDS | 45.0% | |
| GAAGCTAAAGATTGCGGCTA+TGG | - | chr1_1:3409888-3409907 | Msa0001710:CDS | 45.0% | |
| GCGGCGTTTAATCCTAGTTT+GGG | - | chr1_1:3410012-3410031 | Msa0001710:CDS | 45.0% | |
| CGGTAAGTATGATGAGATCG+TGG | - | chr1_1:3410077-3410096 | Msa0001710:CDS | 45.0% | |
| GGAGCTATGGTGAAACAAGA+GGG | - | chr1_1:3410123-3410142 | Msa0001710:CDS | 45.0% | |
| GAGGGATGAAGATTTGGCCA+TGG | + | chr1_1:3409377-3409396 | None:intergenic | 50.0% | |
| ! | GACAAGTGATGGGAGGAGTT+GGG | + | chr1_1:3409407-3409426 | None:intergenic | 50.0% |
| ! | TGACAAGTGATGGGAGGAGT+TGG | + | chr1_1:3409408-3409427 | None:intergenic | 50.0% |
| GAAATTGGAGATGGGTGGTC+GGG | + | chr1_1:3409449-3409468 | None:intergenic | 50.0% | |
| GGAAATTGGAGATGGGTGGT+CGG | + | chr1_1:3409450-3409469 | None:intergenic | 50.0% | |
| ACGTGGAAATTGGAGATGGG+TGG | + | chr1_1:3409454-3409473 | None:intergenic | 50.0% | |
| CCGACGTGGAAATTGGAGAT+GGG | + | chr1_1:3409457-3409476 | None:intergenic | 50.0% | |
| CCCATCTCCAATTTCCACGT+CGG | - | chr1_1:3409454-3409473 | Msa0001710:CDS | 50.0% | |
| TCCGACGTGGAAATTGGAGA+TGG | + | chr1_1:3409458-3409477 | None:intergenic | 50.0% | |
| AATTTCCACGTCGGAGCTGT+CGG | - | chr1_1:3409463-3409482 | Msa0001710:CDS | 50.0% | |
| AGCTGTCGGATTATCCCCAT+CGG | - | chr1_1:3409477-3409496 | Msa0001710:CDS | 50.0% | |
| GATTAAGATCCGACCCGATG+GGG | + | chr1_1:3409494-3409513 | None:intergenic | 50.0% | |
| CGATTAAGATCCGACCCGAT+GGG | + | chr1_1:3409495-3409514 | None:intergenic | 50.0% | |
| CCATCGGGTCGGATCTTAAT+CGG | - | chr1_1:3409493-3409512 | Msa0001710:CDS | 50.0% | |
| GGAGTCAATGTCGAATTCCC+AGG | - | chr1_1:3409514-3409533 | Msa0001710:CDS | 50.0% | |
| CGTGGATGGAGTGATGAAGA+GGG | + | chr1_1:3409543-3409562 | None:intergenic | 50.0% | |
| GACGGCAAATGAGTGGAGAT+TGG | + | chr1_1:3409608-3409627 | None:intergenic | 50.0% | |
| TTTGAATATCGGGTGCTCCG+CGG | + | chr1_1:3409675-3409694 | None:intergenic | 50.0% | |
| TGTTGAGGGAGAAGATCGTG+TGG | + | chr1_1:3409766-3409785 | None:intergenic | 50.0% | |
| GTGCGTGGTTCCAAAAACAG+AGG | + | chr1_1:3409793-3409812 | None:intergenic | 50.0% | |
| !!! | TTTTGGAACCACGCACCAAC+GGG | - | chr1_1:3409797-3409816 | Msa0001710:CDS | 50.0% |
| ! | CGGAAGAAGCTTTAACCCGT+TGG | + | chr1_1:3409815-3409834 | None:intergenic | 50.0% |
| ATCACCGTTGCAAACGCCAT+TGG | + | chr1_1:3409857-3409876 | None:intergenic | 50.0% | |
| GCTAAAGATTGCGGCTATGG+AGG | - | chr1_1:3409891-3409910 | Msa0001710:CDS | 50.0% | |
| GGCGGCGTTTAATCCTAGTT+TGG | - | chr1_1:3410011-3410030 | Msa0001710:CDS | 50.0% | |
| TCCTAGTTTGGGTCCTCTTC+AGG | - | chr1_1:3410023-3410042 | Msa0001710:CDS | 50.0% | |
| ! | GCTGTGTTGGTGGAGAAAGA+CGG | - | chr1_1:3410102-3410121 | Msa0001710:CDS | 50.0% |
| CGGAGCTATGGTGAAACAAG+AGG | - | chr1_1:3410122-3410141 | Msa0001710:CDS | 50.0% | |
| GAGGGATGAAGATTTGGCCA+TGG | + | chr1_1:3409377-3409396 | None:intergenic | 50.0% | |
| ! | GACAAGTGATGGGAGGAGTT+GGG | + | chr1_1:3409407-3409426 | None:intergenic | 50.0% |
| ! | TGACAAGTGATGGGAGGAGT+TGG | + | chr1_1:3409408-3409427 | None:intergenic | 50.0% |
| GAAATTGGAGATGGGTGGTC+GGG | + | chr1_1:3409449-3409468 | None:intergenic | 50.0% | |
| GGAAATTGGAGATGGGTGGT+CGG | + | chr1_1:3409450-3409469 | None:intergenic | 50.0% | |
| ACGTGGAAATTGGAGATGGG+TGG | + | chr1_1:3409454-3409473 | None:intergenic | 50.0% | |
| CCGACGTGGAAATTGGAGAT+GGG | + | chr1_1:3409457-3409476 | None:intergenic | 50.0% | |
| CCCATCTCCAATTTCCACGT+CGG | - | chr1_1:3409454-3409473 | Msa0001710:CDS | 50.0% | |
| TCCGACGTGGAAATTGGAGA+TGG | + | chr1_1:3409458-3409477 | None:intergenic | 50.0% | |
| AATTTCCACGTCGGAGCTGT+CGG | - | chr1_1:3409463-3409482 | Msa0001710:CDS | 50.0% | |
| AGCTGTCGGATTATCCCCAT+CGG | - | chr1_1:3409477-3409496 | Msa0001710:CDS | 50.0% | |
| GATTAAGATCCGACCCGATG+GGG | + | chr1_1:3409494-3409513 | None:intergenic | 50.0% | |
| CGATTAAGATCCGACCCGAT+GGG | + | chr1_1:3409495-3409514 | None:intergenic | 50.0% | |
| CCATCGGGTCGGATCTTAAT+CGG | - | chr1_1:3409493-3409512 | Msa0001710:CDS | 50.0% | |
| GGAGTCAATGTCGAATTCCC+AGG | - | chr1_1:3409514-3409533 | Msa0001710:CDS | 50.0% | |
| CGTGGATGGAGTGATGAAGA+GGG | + | chr1_1:3409543-3409562 | None:intergenic | 50.0% | |
| GACGGCAAATGAGTGGAGAT+TGG | + | chr1_1:3409608-3409627 | None:intergenic | 50.0% | |
| TTTGAATATCGGGTGCTCCG+CGG | + | chr1_1:3409675-3409694 | None:intergenic | 50.0% | |
| TGTTGAGGGAGAAGATCGTG+TGG | + | chr1_1:3409766-3409785 | None:intergenic | 50.0% | |
| GTGCGTGGTTCCAAAAACAG+AGG | + | chr1_1:3409793-3409812 | None:intergenic | 50.0% | |
| !!! | TTTTGGAACCACGCACCAAC+GGG | - | chr1_1:3409797-3409816 | Msa0001710:CDS | 50.0% |
| ! | CGGAAGAAGCTTTAACCCGT+TGG | + | chr1_1:3409815-3409834 | None:intergenic | 50.0% |
| ATCACCGTTGCAAACGCCAT+TGG | + | chr1_1:3409857-3409876 | None:intergenic | 50.0% | |
| GCTAAAGATTGCGGCTATGG+AGG | - | chr1_1:3409891-3409910 | Msa0001710:CDS | 50.0% | |
| GGCGGCGTTTAATCCTAGTT+TGG | - | chr1_1:3410011-3410030 | Msa0001710:CDS | 50.0% | |
| TCCTAGTTTGGGTCCTCTTC+AGG | - | chr1_1:3410023-3410042 | Msa0001710:CDS | 50.0% | |
| ! | GCTGTGTTGGTGGAGAAAGA+CGG | - | chr1_1:3410102-3410121 | Msa0001710:CDS | 50.0% |
| CGGAGCTATGGTGAAACAAG+AGG | - | chr1_1:3410122-3410141 | Msa0001710:CDS | 50.0% | |
| AGCCACCGAAGCCAAATCCA+TGG | - | chr1_1:3409357-3409376 | Msa0001710:CDS | 55.0% | |
| GAGGAGTTGGGTGAGAGTGA+GGG | + | chr1_1:3409395-3409414 | None:intergenic | 55.0% | |
| GACAGCTCCGACGTGGAAAT+TGG | + | chr1_1:3409464-3409483 | None:intergenic | 55.0% | |
| ATAATCCGACAGCTCCGACG+TGG | + | chr1_1:3409471-3409490 | None:intergenic | 55.0% | |
| GCTGTCGGATTATCCCCATC+GGG | - | chr1_1:3409478-3409497 | Msa0001710:CDS | 55.0% | |
| TCGGATTATCCCCATCGGGT+CGG | - | chr1_1:3409482-3409501 | Msa0001710:CDS | 55.0% | |
| CCGATTAAGATCCGACCCGA+TGG | + | chr1_1:3409496-3409515 | None:intergenic | 55.0% | |
| AGTGATGAAGAGGGAGGCCT+GGG | + | chr1_1:3409534-3409553 | None:intergenic | 55.0% | |
| GGATGGAGTGATGAAGAGGG+AGG | + | chr1_1:3409540-3409559 | None:intergenic | 55.0% | |
| GCGTGGATGGAGTGATGAAG+AGG | + | chr1_1:3409544-3409563 | None:intergenic | 55.0% | |
| GAGAAACTGTTCGGCGTGGA+TGG | + | chr1_1:3409557-3409576 | None:intergenic | 55.0% | |
| TGAGGAGAAACTGTTCGGCG+TGG | + | chr1_1:3409561-3409580 | None:intergenic | 55.0% | |
| CGTGGAGGGAGAGATTTGTG+AGG | + | chr1_1:3409579-3409598 | None:intergenic | 55.0% | |
| GAGATTGGGTTCGTCGTGGA+GGG | + | chr1_1:3409593-3409612 | None:intergenic | 55.0% | |
| AGTGGAGATTGGGTTCGTCG+TGG | + | chr1_1:3409597-3409616 | None:intergenic | 55.0% | |
| CTTGGAAGAATTGCCGGCAG+TGG | + | chr1_1:3409648-3409667 | None:intergenic | 55.0% | |
| ! | AGCTTTAACCCGTTGGTGCG+TGG | + | chr1_1:3409808-3409827 | None:intergenic | 55.0% |
| ! | ACCATCTGGGATGGCGATTG+TGG | - | chr1_1:3409948-3409967 | Msa0001710:CDS | 55.0% |
| TCCACAATCGCCATCCCAGA+TGG | + | chr1_1:3409952-3409971 | None:intergenic | 55.0% | |
| GCCTGAAGAGGACCCAAACT+AGG | + | chr1_1:3410027-3410046 | None:intergenic | 55.0% | |
| TTTGGGTCCTCTTCAGGCTG+CGG | - | chr1_1:3410029-3410048 | Msa0001710:CDS | 55.0% | |
| ! | GTGGTGGCGTTTATTGTCGC+CGG | - | chr1_1:3410051-3410070 | Msa0001710:CDS | 55.0% |
| CTCATCATACTTACCGCCGC+CGG | + | chr1_1:3410073-3410092 | None:intergenic | 55.0% | |
| ! | TGAGATCGTGGGTGCTGTGT+TGG | - | chr1_1:3410089-3410108 | Msa0001710:CDS | 55.0% |
| GGTGGAGAAAGACGGAGCTA+TGG | - | chr1_1:3410110-3410129 | Msa0001710:CDS | 55.0% | |
| AGCCACCGAAGCCAAATCCA+TGG | - | chr1_1:3409357-3409376 | Msa0001710:CDS | 55.0% | |
| GAGGAGTTGGGTGAGAGTGA+GGG | + | chr1_1:3409395-3409414 | None:intergenic | 55.0% | |
| GACAGCTCCGACGTGGAAAT+TGG | + | chr1_1:3409464-3409483 | None:intergenic | 55.0% | |
| ATAATCCGACAGCTCCGACG+TGG | + | chr1_1:3409471-3409490 | None:intergenic | 55.0% | |
| GCTGTCGGATTATCCCCATC+GGG | - | chr1_1:3409478-3409497 | Msa0001710:CDS | 55.0% | |
| TCGGATTATCCCCATCGGGT+CGG | - | chr1_1:3409482-3409501 | Msa0001710:CDS | 55.0% | |
| CCGATTAAGATCCGACCCGA+TGG | + | chr1_1:3409496-3409515 | None:intergenic | 55.0% | |
| AGTGATGAAGAGGGAGGCCT+GGG | + | chr1_1:3409534-3409553 | None:intergenic | 55.0% | |
| GGATGGAGTGATGAAGAGGG+AGG | + | chr1_1:3409540-3409559 | None:intergenic | 55.0% | |
| GCGTGGATGGAGTGATGAAG+AGG | + | chr1_1:3409544-3409563 | None:intergenic | 55.0% | |
| GAGAAACTGTTCGGCGTGGA+TGG | + | chr1_1:3409557-3409576 | None:intergenic | 55.0% | |
| TGAGGAGAAACTGTTCGGCG+TGG | + | chr1_1:3409561-3409580 | None:intergenic | 55.0% | |
| CGTGGAGGGAGAGATTTGTG+AGG | + | chr1_1:3409579-3409598 | None:intergenic | 55.0% | |
| GAGATTGGGTTCGTCGTGGA+GGG | + | chr1_1:3409593-3409612 | None:intergenic | 55.0% | |
| AGTGGAGATTGGGTTCGTCG+TGG | + | chr1_1:3409597-3409616 | None:intergenic | 55.0% | |
| CTTGGAAGAATTGCCGGCAG+TGG | + | chr1_1:3409648-3409667 | None:intergenic | 55.0% | |
| ! | AGCTTTAACCCGTTGGTGCG+TGG | + | chr1_1:3409808-3409827 | None:intergenic | 55.0% |
| ! | ACCATCTGGGATGGCGATTG+TGG | - | chr1_1:3409948-3409967 | Msa0001710:CDS | 55.0% |
| TCCACAATCGCCATCCCAGA+TGG | + | chr1_1:3409952-3409971 | None:intergenic | 55.0% | |
| GCCTGAAGAGGACCCAAACT+AGG | + | chr1_1:3410027-3410046 | None:intergenic | 55.0% | |
| TTTGGGTCCTCTTCAGGCTG+CGG | - | chr1_1:3410029-3410048 | Msa0001710:CDS | 55.0% | |
| ! | GTGGTGGCGTTTATTGTCGC+CGG | - | chr1_1:3410051-3410070 | Msa0001710:CDS | 55.0% |
| CTCATCATACTTACCGCCGC+CGG | + | chr1_1:3410073-3410092 | None:intergenic | 55.0% | |
| ! | TGAGATCGTGGGTGCTGTGT+TGG | - | chr1_1:3410089-3410108 | Msa0001710:CDS | 55.0% |
| GGTGGAGAAAGACGGAGCTA+TGG | - | chr1_1:3410110-3410129 | Msa0001710:CDS | 55.0% | |
| ! | GGCCATGGATTTGGCTTCGG+TGG | + | chr1_1:3409362-3409381 | None:intergenic | 60.0% |
| GGAGGAGTTGGGTGAGAGTG+AGG | + | chr1_1:3409396-3409415 | None:intergenic | 60.0% | |
| ! | CGGAGGTGACAAGTGATGGG+AGG | + | chr1_1:3409414-3409433 | None:intergenic | 60.0% |
| GGGCGGAGGTGACAAGTGAT+GGG | + | chr1_1:3409417-3409436 | None:intergenic | 60.0% | |
| TGGGCGGAGGTGACAAGTGA+TGG | + | chr1_1:3409418-3409437 | None:intergenic | 60.0% | |
| GAGTGATGAAGAGGGAGGCC+TGG | + | chr1_1:3409535-3409554 | None:intergenic | 60.0% | |
| GGAGATTGGGTTCGTCGTGG+AGG | + | chr1_1:3409594-3409613 | None:intergenic | 60.0% | |
| AATTGCCGGCAGTGGCCACA+GGG | + | chr1_1:3409640-3409659 | None:intergenic | 60.0% | |
| GTGGCGTTTATTGTCGCCGG+CGG | - | chr1_1:3410054-3410073 | Msa0001710:CDS | 60.0% | |
| ! | GATCGTGGGTGCTGTGTTGG+TGG | - | chr1_1:3410092-3410111 | Msa0001710:CDS | 60.0% |
| ! | GGCCATGGATTTGGCTTCGG+TGG | + | chr1_1:3409362-3409381 | None:intergenic | 60.0% |
| GGAGGAGTTGGGTGAGAGTG+AGG | + | chr1_1:3409396-3409415 | None:intergenic | 60.0% | |
| ! | CGGAGGTGACAAGTGATGGG+AGG | + | chr1_1:3409414-3409433 | None:intergenic | 60.0% |
| GGGCGGAGGTGACAAGTGAT+GGG | + | chr1_1:3409417-3409436 | None:intergenic | 60.0% | |
| TGGGCGGAGGTGACAAGTGA+TGG | + | chr1_1:3409418-3409437 | None:intergenic | 60.0% | |
| GAGTGATGAAGAGGGAGGCC+TGG | + | chr1_1:3409535-3409554 | None:intergenic | 60.0% | |
| GGAGATTGGGTTCGTCGTGG+AGG | + | chr1_1:3409594-3409613 | None:intergenic | 60.0% | |
| AATTGCCGGCAGTGGCCACA+GGG | + | chr1_1:3409640-3409659 | None:intergenic | 60.0% | |
| GTGGCGTTTATTGTCGCCGG+CGG | - | chr1_1:3410054-3410073 | Msa0001710:CDS | 60.0% | |
| ! | GATCGTGGGTGCTGTGTTGG+TGG | - | chr1_1:3410092-3410111 | Msa0001710:CDS | 60.0% |
| CGGCGGAGACGGCAAATGAG+TGG | + | chr1_1:3409615-3409634 | None:intergenic | 65.0% | |
| GAATTGCCGGCAGTGGCCAC+AGG | + | chr1_1:3409641-3409660 | None:intergenic | 65.0% | |
| CGGGTGCTCCGCGGATTTCT+TGG | + | chr1_1:3409666-3409685 | None:intergenic | 65.0% | |
| TCCTCTTCAGGCTGCGGTGG+TGG | - | chr1_1:3410035-3410054 | Msa0001710:CDS | 65.0% | |
| GCGTTTATTGTCGCCGGCGG+CGG | - | chr1_1:3410057-3410076 | Msa0001710:CDS | 65.0% | |
| CGGCGGAGACGGCAAATGAG+TGG | + | chr1_1:3409615-3409634 | None:intergenic | 65.0% | |
| GAATTGCCGGCAGTGGCCAC+AGG | + | chr1_1:3409641-3409660 | None:intergenic | 65.0% | |
| CGGGTGCTCCGCGGATTTCT+TGG | + | chr1_1:3409666-3409685 | None:intergenic | 65.0% | |
| TCCTCTTCAGGCTGCGGTGG+TGG | - | chr1_1:3410035-3410054 | Msa0001710:CDS | 65.0% | |
| GCGTTTATTGTCGCCGGCGG+CGG | - | chr1_1:3410057-3410076 | Msa0001710:CDS | 65.0% | |
| TGGTCGGGCGAGGGATTGGG+CGG | + | chr1_1:3409434-3409453 | None:intergenic | 70.0% | |
| GGGTGGTCGGGCGAGGGATT+GGG | + | chr1_1:3409437-3409456 | None:intergenic | 70.0% | |
| TGGGTGGTCGGGCGAGGGAT+TGG | + | chr1_1:3409438-3409457 | None:intergenic | 70.0% | |
| GGAGATGGGTGGTCGGGCGA+GGG | + | chr1_1:3409443-3409462 | None:intergenic | 70.0% | |
| TGGAGATGGGTGGTCGGGCG+AGG | + | chr1_1:3409444-3409463 | None:intergenic | 70.0% | |
| GGGTCCTCTTCAGGCTGCGG+TGG | - | chr1_1:3410032-3410051 | Msa0001710:CDS | 70.0% | |
| GCCACCACCGCAGCCTGAAG+AGG | + | chr1_1:3410039-3410058 | None:intergenic | 70.0% | |
| TGGTCGGGCGAGGGATTGGG+CGG | + | chr1_1:3409434-3409453 | None:intergenic | 70.0% | |
| GGGTGGTCGGGCGAGGGATT+GGG | + | chr1_1:3409437-3409456 | None:intergenic | 70.0% | |
| TGGGTGGTCGGGCGAGGGAT+TGG | + | chr1_1:3409438-3409457 | None:intergenic | 70.0% | |
| GGAGATGGGTGGTCGGGCGA+GGG | + | chr1_1:3409443-3409462 | None:intergenic | 70.0% | |
| TGGAGATGGGTGGTCGGGCG+AGG | + | chr1_1:3409444-3409463 | None:intergenic | 70.0% | |
| GGGTCCTCTTCAGGCTGCGG+TGG | - | chr1_1:3410032-3410051 | Msa0001710:CDS | 70.0% | |
| GCCACCACCGCAGCCTGAAG+AGG | + | chr1_1:3410039-3410058 | None:intergenic | 70.0% | |
| TCGGGCGAGGGATTGGGCGG+AGG | + | chr1_1:3409431-3409450 | None:intergenic | 75.0% | |
| GCCACAGGGAGCGGCGGAGA+CGG | + | chr1_1:3409626-3409645 | None:intergenic | 75.0% | |
| GCAGTGGCCACAGGGAGCGG+CGG | + | chr1_1:3409632-3409651 | None:intergenic | 75.0% | |
| CCGGCAGTGGCCACAGGGAG+CGG | + | chr1_1:3409635-3409654 | None:intergenic | 75.0% | |
| CCGCTCCCTGTGGCCACTGC+CGG | - | chr1_1:3409632-3409651 | Msa0001710:CDS | 75.0% | |
| TCGGGCGAGGGATTGGGCGG+AGG | + | chr1_1:3409431-3409450 | None:intergenic | 75.0% | |
| GCCACAGGGAGCGGCGGAGA+CGG | + | chr1_1:3409626-3409645 | None:intergenic | 75.0% | |
| GCAGTGGCCACAGGGAGCGG+CGG | + | chr1_1:3409632-3409651 | None:intergenic | 75.0% | |
| CCGGCAGTGGCCACAGGGAG+CGG | + | chr1_1:3409635-3409654 | None:intergenic | 75.0% | |
| CCGCTCCCTGTGGCCACTGC+CGG | - | chr1_1:3409632-3409651 | Msa0001710:CDS | 75.0% | |
| ! | GCCGTCTCCGCCGCTCCCTG+TGG | - | chr1_1:3409622-3409641 | Msa0001710:CDS | 80.0% |
| ! | GCCGTCTCCGCCGCTCCCTG+TGG | - | chr1_1:3409622-3409641 | Msa0001710:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3409331 | 3410221 | 3409331 | ID=Msa0001710;Name=Msa0001710 |
| chr1_1 | mRNA | 3409331 | 3410221 | 3409331 | ID=Msa0001710-mRNA-1;Parent=Msa0001710;Name=Msa0001710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|296 |
| chr1_1 | exon | 3409331 | 3410221 | 3409331 | ID=Msa0001710-mRNA-1:exon:963;Parent=Msa0001710-mRNA-1 |
| chr1_1 | CDS | 3409331 | 3410221 | 3409331 | ID=Msa0001710-mRNA-1:cds;Parent=Msa0001710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
