AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1305810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305810 MtrunA17_Chr1g0191241 98.653 297 4 0 1 297 1 297 0.0 597
Msa1305810 MtrunA17_Chr4g0061391 61.977 263 98 1 37 297 24 286 2.71e-109 318
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305810 AT3G05010.1 68.493 292 88 1 6 297 13 300 1.60e-149 421
Msa1305810 AT5G27210.1 70.370 270 80 0 28 297 28 297 1.97e-140 398

Find 78 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCTAAATTTAGAATT+AGG 0.096517 8_3:-69488693 Msa1305810:five_prime_UTR
TTGTCCTTGTTTACTTCTTC+TGG 0.137493 8_3:-69487581 Msa1305810:CDS
TTCTTCTGGAATGCTGTTTC+TGG 0.158996 8_3:-69487567 Msa1305810:CDS
AAAACCCTAATTCTAAATTT+AGG 0.221899 8_3:+69488688 None:intergenic
TCGCTTGTATATCCTATTTC+GGG 0.232882 8_3:-69486548 Msa1305810:three_prime_UTR
CTCGTGCTCACCGTTGTTTA+TGG 0.242634 8_3:-69487259 Msa1305810:CDS
TATTGTTCATGTATCATTCT+AGG 0.242876 8_3:-69487231 Msa1305810:CDS
ACTGGAAACGGCGCTGGTTT+TGG 0.246426 8_3:-69487033 Msa1305810:CDS
ACTGCTGTATATTACATTTC+TGG 0.250927 8_3:-69486872 Msa1305810:CDS
CTATATATCTATTTGCATTT+GGG 0.257819 8_3:-69487351 Msa1305810:CDS
TTGTTTGCTTGCGGGCTTAC+TGG 0.258766 8_3:-69487051 Msa1305810:CDS
CCATTTGTGCGAGAAATTCT+TGG 0.258968 8_3:+69488642 None:intergenic
TTCACCTAAATTTAGAATTA+GGG 0.270715 8_3:-69488692 Msa1305810:five_prime_UTR
ATCGCTTGTATATCCTATTT+CGG 0.271322 8_3:-69486549 Msa1305810:three_prime_UTR
TCTAAATTTAGGTGAAGAAT+TGG 0.276391 8_3:+69488699 None:intergenic
CAATTGCATTGTTTGCTTGC+GGG 0.288884 8_3:-69487059 Msa1305810:CDS
GCTATATATCTATTTGCATT+TGG 0.295526 8_3:-69487352 Msa1305810:CDS
ACAAAAGAATTACCTTTAAC+AGG 0.300915 8_3:+69487441 None:intergenic
TCGTGCTCACCGTTGTTTAT+GGG 0.323009 8_3:-69487258 Msa1305810:CDS
ATACAGCAGTGGAAGATAAA+AGG 0.326151 8_3:+69486885 None:intergenic
TGGAATCGATGGAGAAAATA+AGG 0.331613 8_3:+69488719 None:intergenic
CAGGCATGGGAGTGCACTCC+TGG 0.335049 8_3:-69487626 Msa1305810:CDS
TTGATTATTCACGACGACTA+TGG 0.343314 8_3:+69488876 None:intergenic
GTTTCTGGAAGTGAGCTTGC+TGG 0.348925 8_3:-69487552 Msa1305810:CDS
GAAGATTCTTCTTCTTCTAC+TGG 0.367957 8_3:-69488590 Msa1305810:CDS
TTTCGTATTATGCTTCTCTT+TGG 0.381366 8_3:-69488409 Msa1305810:CDS
GAAGCATTGACACGAACTTT+TGG 0.389803 8_3:-69487494 Msa1305810:CDS
GGTATATCCGGTATCATTGT+TGG 0.395818 8_3:-69487473 Msa1305810:CDS
GTCCTCTATATACTAATTGC+AGG 0.397111 8_3:-69486619 Msa1305810:three_prime_UTR
CCAAGAATTTCTCGCACAAA+TGG 0.414360 8_3:-69488642 Msa1305810:exon
GAGGAGAGTAGAATTTACTA+TGG 0.436023 8_3:+69488977 None:intergenic
TCGCTTGAAGTGGAACTTGT+GGG 0.460605 8_3:-69487293 Msa1305810:CDS
TAACAAAGGGATTCACCGAT+TGG 0.465604 8_3:-69488562 Msa1305810:CDS
TACTCTGAAATGAAAGATGC+TGG 0.469422 8_3:-69486698 Msa1305810:CDS
AACAAAGGGATTCACCGATT+GGG 0.473818 8_3:-69488561 Msa1305810:CDS
GATCAGTGTCGATGAACAAC+GGG 0.476434 8_3:+69487326 None:intergenic
GGGCTTACTGGAAACGGCGC+TGG 0.478494 8_3:-69487039 Msa1305810:CDS
GATGTTGAAGAGATTAGTTA+CGG 0.484170 8_3:+69488760 None:intergenic
GCTTGCGGGCTTACTGGAAA+CGG 0.488027 8_3:-69487045 Msa1305810:CDS
TTCCATGTTAGCTCTTTCCC+AGG 0.494192 8_3:+69487608 None:intergenic
TTAGCATTCTCAATCTCGCT+TGG 0.494748 8_3:-69488382 Msa1305810:CDS
ATCAAAACCAACAATGATAC+CGG 0.504747 8_3:+69487466 None:intergenic
GCAATTGCATTGTTTGCTTG+CGG 0.512576 8_3:-69487060 Msa1305810:CDS
CTCGCTTGAAGTGGAACTTG+TGG 0.521442 8_3:-69487294 Msa1305810:CDS
TATATATCTATTTGCATTTG+GGG 0.524806 8_3:-69487350 Msa1305810:CDS
AGGTGAAGAATTGGAATCGA+TGG 0.533879 8_3:+69488708 None:intergenic
TTGTTCATCGACACTGATCA+TGG 0.535592 8_3:-69487322 Msa1305810:CDS
CAACGGTGAGCACGAGCTTG+TGG 0.536256 8_3:+69487266 None:intergenic
ATAAAGCAATCAAACACTAC+AGG 0.537807 8_3:+69486494 None:intergenic
CTCCTGGGAAAGAGCTAACA+TGG 0.539196 8_3:-69487610 Msa1305810:CDS
GTCCTGCAATTAGTATATAG+AGG 0.539923 8_3:+69486617 None:intergenic
ATCATTCTAGGTGGAGAGAA+AGG 0.546944 8_3:-69487219 Msa1305810:CDS
TATAAAAGATAAAATAGCAA+TGG 0.552291 8_3:+69488953 None:intergenic
ATGGTACTCCTCGCTTGAAG+TGG 0.567386 8_3:-69487303 Msa1305810:CDS
AAGATAAAATAGCAATGGAG+AGG 0.575276 8_3:+69488958 None:intergenic
CTTCAGGGAAATAATGCAAG+TGG 0.588641 8_3:-69487521 Msa1305810:CDS
GTGACACTCGAAAACCCAAT+CGG 0.591095 8_3:+69488547 None:intergenic
TATCAGATTACGACCACCGC+GGG 0.591316 8_3:-69486474 Msa1305810:three_prime_UTR
AGGTGGAGAGAAAGGTTACC+CGG 0.604674 8_3:-69487211 Msa1305810:intron
AGGCATGGGAGTGCACTCCT+GGG 0.610220 8_3:-69487625 Msa1305810:CDS
ATCGGTGCTATCAATAACAA+AGG 0.618733 8_3:-69488612 Msa1305810:CDS
CATTCCAGAAGAAGTAAACA+AGG 0.620907 8_3:+69487577 None:intergenic
CACAAGTTCCACTTCAAGCG+AGG 0.621744 8_3:+69487295 None:intergenic
TATGATATAAGAGCGACCAT+TGG 0.623291 8_3:+69488433 None:intergenic
TGATCAGTGTCGATGAACAA+CGG 0.625959 8_3:+69487325 None:intergenic
ATAACATACTTGTAAAACGC+AGG 0.629597 8_3:+69487102 None:intergenic
CGCTTGTATATCCTATTTCG+GGG 0.629906 8_3:-69486547 Msa1305810:three_prime_UTR
GCAGTGGAAGATAAAAGGCA+TGG 0.634056 8_3:+69486890 None:intergenic
AAGCAATCAAACACTACAGG+AGG 0.642728 8_3:+69486497 None:intergenic
TGTTCATGTATCATTCTAGG+TGG 0.650713 8_3:-69487228 Msa1305810:CDS
AGAAATGTAATATACAGCAG+TGG 0.653445 8_3:+69486874 None:intergenic
TAGAATTTACTATGGACAGA+CGG 0.654445 8_3:+69488985 None:intergenic
ACGACGACTATGGTTAAAGT+CGG 0.673621 8_3:+69488886 None:intergenic
GAATCAGACTGGGAGTGACG+TGG 0.679586 8_3:-69486668 Msa1305810:exon
CAATATGAGCCCATAAACAA+CGG 0.679882 8_3:+69487249 None:intergenic
AAAATAAATGTAACCCGCGG+TGG 0.693404 8_3:+69486461 None:intergenic
TCTAAAATAAATGTAACCCG+CGG 0.718265 8_3:+69486458 None:intergenic
TTATCAGATTACGACCACCG+CGG 0.792310 8_3:-69486475 Msa1305810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAGATAAAATAGCAA+TGG + chr8_3:69486478-69486497 None:intergenic 15.0%
!!! TGATTGATTTTGATTATGTT+TGG + chr8_3:69486606-69486625 None:intergenic 20.0%
!!! TTCACCTAAATTTAGAATTA+GGG - chr8_3:69486736-69486755 Msa1305810:intron 20.0%
!! AAAACCCTAATTCTAAATTT+AGG + chr8_3:69486743-69486762 None:intergenic 20.0%
!!! CTTGTTTCATTTTTATTTCA+AGG - chr8_3:69487097-69487116 Msa1305810:CDS 20.0%
!! AATTAAGCTGTTTATCTAAA+TGG - chr8_3:69487205-69487224 Msa1305810:intron 20.0%
!! CTATATATCTATTTGCATTT+GGG - chr8_3:69488077-69488096 Msa1305810:intron 20.0%
!! TATATATCTATTTGCATTTG+GGG - chr8_3:69488078-69488097 Msa1305810:intron 20.0%
!!! ATGTTTGGTTTGTTTTTCTT+GGG + chr8_3:69486591-69486610 None:intergenic 25.0%
!!! TATGTTTGGTTTGTTTTTCT+TGG + chr8_3:69486592-69486611 None:intergenic 25.0%
! TCTAAATTTAGGTGAAGAAT+TGG + chr8_3:69486732-69486751 None:intergenic 25.0%
!! CTTCACCTAAATTTAGAATT+AGG - chr8_3:69486735-69486754 Msa1305810:intron 25.0%
!! TTTTCTCTTCGTTTTGTATT+TGG - chr8_3:69486939-69486958 Msa1305810:intron 25.0%
!! TTATCTAAATGGACTTAGTT+AGG - chr8_3:69487216-69487235 Msa1305810:CDS 25.0%
!! TATCTAAATGGACTTAGTTA+GGG - chr8_3:69487217-69487236 Msa1305810:CDS 25.0%
! AATAAGCTGAAAACATCTTA+TGG + chr8_3:69487335-69487354 None:intergenic 25.0%
!! TAGATTTTCATAAGCTATCT+TGG + chr8_3:69487370-69487389 None:intergenic 25.0%
! AAGATAGCTTATGAAAATCT+AGG - chr8_3:69487369-69487388 Msa1305810:intron 25.0%
! TTAGAGAACATATGTTCTTA+TGG - chr8_3:69487540-69487559 Msa1305810:CDS 25.0%
!! ATTGAGTTGTATATCTAAAC+AGG - chr8_3:69487605-69487624 Msa1305810:CDS 25.0%
!! TTGAGTTGTATATCTAAACA+GGG - chr8_3:69487606-69487625 Msa1305810:CDS 25.0%
! ACAAAAGAATTACCTTTAAC+AGG + chr8_3:69487990-69488009 None:intergenic 25.0%
! GCTATATATCTATTTGCATT+TGG - chr8_3:69488076-69488095 Msa1305810:intron 25.0%
! TATTGTTCATGTATCATTCT+AGG - chr8_3:69488197-69488216 Msa1305810:intron 25.0%
!!! TAGTTCTGAACTTTATTCTT+TGG - chr8_3:69488451-69488470 Msa1305810:CDS 25.0%
! ATTGTTCTTCTTTGTATTAC+AGG - chr8_3:69488678-69488697 Msa1305810:five_prime_UTR 25.0%
TAGAATTTACTATGGACAGA+CGG + chr8_3:69486446-69486465 None:intergenic 30.0%
AAGATAAAATAGCAATGGAG+AGG + chr8_3:69486473-69486492 None:intergenic 30.0%
! GATGTTGAAGAGATTAGTTA+CGG + chr8_3:69486671-69486690 None:intergenic 30.0%
!! ATTCTTGGTTTTTGGGAAAA+GGG + chr8_3:69486774-69486793 None:intergenic 30.0%
!! AATTCTTGGTTTTTGGGAAA+AGG + chr8_3:69486775-69486794 None:intergenic 30.0%
!! TTCTACTGGAGTTTTAACAA+AGG - chr8_3:69486852-69486871 Msa1305810:intron 30.0%
!! TCTACTGGAGTTTTAACAAA+GGG - chr8_3:69486853-69486872 Msa1305810:intron 30.0%
TTTCGTATTATGCTTCTCTT+TGG - chr8_3:69487019-69487038 Msa1305810:intron 30.0%
AGAAAGAAAGAATGAAACCT+GGG + chr8_3:69487079-69487098 None:intergenic 30.0%
AAGAAAGAAAGAATGAAACC+TGG + chr8_3:69487080-69487099 None:intergenic 30.0%
TATACAATGACATAAGCATG+AGG - chr8_3:69487266-69487285 Msa1305810:CDS 30.0%
! TTATATCCTTTTTCTCCCTT+TGG - chr8_3:69487756-69487775 Msa1305810:intron 30.0%
ATTTGTTCTGGTGATAATTC+AGG - chr8_3:69487783-69487802 Msa1305810:intron 30.0%
ATCAAAACCAACAATGATAC+CGG + chr8_3:69487965-69487984 None:intergenic 30.0%
! CTGGTTATGTATGATTAGTT+TGG - chr8_3:69488038-69488057 Msa1305810:intron 30.0%
AATCCCTACAATTAACTTAC+CGG + chr8_3:69488239-69488258 None:intergenic 30.0%
ATAACATACTTGTAAAACGC+AGG + chr8_3:69488329-69488348 None:intergenic 30.0%
AGAAATGTAATATACAGCAG+TGG + chr8_3:69488557-69488576 None:intergenic 30.0%
ACTGCTGTATATTACATTTC+TGG - chr8_3:69488556-69488575 Msa1305810:CDS 30.0%
TTACAATGCGCTTTACTTTA+TGG - chr8_3:69488594-69488613 Msa1305810:CDS 30.0%
ATGCAGTATTGTTTGTAGTT+TGG - chr8_3:69488644-69488663 Msa1305810:exon 30.0%
ATCGCTTGTATATCCTATTT+CGG - chr8_3:69488879-69488898 Msa1305810:five_prime_UTR 30.0%
!!! TTTTTTTTCTTCCCCGAAAT+AGG + chr8_3:69488895-69488914 None:intergenic 30.0%
ATAAAGCAATCAAACACTAC+AGG + chr8_3:69488937-69488956 None:intergenic 30.0%
! TCTAAAATAAATGTAACCCG+CGG + chr8_3:69488973-69488992 None:intergenic 30.0%
GAGGAGAGTAGAATTTACTA+TGG + chr8_3:69486454-69486473 None:intergenic 35.0%
TTGATTATTCACGACGACTA+TGG + chr8_3:69486555-69486574 None:intergenic 35.0%
! TGTTTTTCTTGGGTGAGTTT+TGG + chr8_3:69486581-69486600 None:intergenic 35.0%
TGGAATCGATGGAGAAAATA+AGG + chr8_3:69486712-69486731 None:intergenic 35.0%
!! GCGAGAAATTCTTGGTTTTT+GGG + chr8_3:69486781-69486800 None:intergenic 35.0%
!! TGCGAGAAATTCTTGGTTTT+TGG + chr8_3:69486782-69486801 None:intergenic 35.0%
CGCACAAATGGTTGAAAAAT+CGG - chr8_3:69486798-69486817 Msa1305810:intron 35.0%
!! ATCGGTGCTATCAATAACAA+AGG - chr8_3:69486816-69486835 Msa1305810:intron 35.0%
GAAGATTCTTCTTCTTCTAC+TGG - chr8_3:69486838-69486857 Msa1305810:intron 35.0%
! AGCTTTTACAAACTCACCAA+TGG - chr8_3:69486979-69486998 Msa1305810:intron 35.0%
TATGATATAAGAGCGACCAT+TGG + chr8_3:69486998-69487017 None:intergenic 35.0%
AAAATCTAGGTAGTCAATCC+CGG - chr8_3:69487382-69487401 Msa1305810:intron 35.0%
AACTAGAATAGCAGCAACTA+AGG + chr8_3:69487632-69487651 None:intergenic 35.0%
ATTCAACCAAAGGGAGAAAA+AGG + chr8_3:69487765-69487784 None:intergenic 35.0%
CCAGAACAAATTCAACCAAA+GGG + chr8_3:69487774-69487793 None:intergenic 35.0%
ACCAGAACAAATTCAACCAA+AGG + chr8_3:69487775-69487794 None:intergenic 35.0%
! TTGTCCTTGTTTACTTCTTC+TGG - chr8_3:69487847-69487866 Msa1305810:intron 35.0%
CATTCCAGAAGAAGTAAACA+AGG + chr8_3:69487854-69487873 None:intergenic 35.0%
!!! TTGCTGGCTTTTTTACTTCA+GGG - chr8_3:69487892-69487911 Msa1305810:intron 35.0%
! ACACGAACTTTTGGTATATC+CGG - chr8_3:69487943-69487962 Msa1305810:intron 35.0%
!!! TGGTTTTGATGTCCTGTTAA+AGG - chr8_3:69487975-69487994 Msa1305810:intron 35.0%
ATATTTCATTGTCCTTGTGC+TGG - chr8_3:69488019-69488038 Msa1305810:intron 35.0%
AATCATACATAACCAGCACA+AGG + chr8_3:69488034-69488053 None:intergenic 35.0%
! AGTTTGGCGTTTTCTTTGTT+AGG - chr8_3:69488054-69488073 Msa1305810:intron 35.0%
CAATATGAGCCCATAAACAA+CGG + chr8_3:69488182-69488201 None:intergenic 35.0%
TGTTCATGTATCATTCTAGG+TGG - chr8_3:69488200-69488219 Msa1305810:intron 35.0%
TTACCCGGTAAGTTAATTGT+AGG - chr8_3:69488232-69488251 Msa1305810:intron 35.0%
TACCCGGTAAGTTAATTGTA+GGG - chr8_3:69488233-69488252 Msa1305810:intron 35.0%
ATCCCTACAATTAACTTACC+GGG + chr8_3:69488238-69488257 None:intergenic 35.0%
CTGTGTTTACTTTATCTCAC+AGG - chr8_3:69488489-69488508 Msa1305810:CDS 35.0%
ATACAGCAGTGGAAGATAAA+AGG + chr8_3:69488546-69488565 None:intergenic 35.0%
!!! ATTTCTGGCAGACTTTTTTC+AGG - chr8_3:69488571-69488590 Msa1305810:CDS 35.0%
ACAAAGAAGAACAATCAGTC+AGG + chr8_3:69488673-69488692 None:intergenic 35.0%
GTTCTTCTTTGTATTACAGG+AGG - chr8_3:69488681-69488700 Msa1305810:five_prime_UTR 35.0%
!! TACTCTGAAATGAAAGATGC+TGG - chr8_3:69488730-69488749 Msa1305810:five_prime_UTR 35.0%
!!! TGGTTTTTTCGAATCAGACT+GGG - chr8_3:69488750-69488769 Msa1305810:five_prime_UTR 35.0%
GTCCTCTATATACTAATTGC+AGG - chr8_3:69488809-69488828 Msa1305810:five_prime_UTR 35.0%
GTCCTGCAATTAGTATATAG+AGG + chr8_3:69488814-69488833 None:intergenic 35.0%
TCGCTTGTATATCCTATTTC+GGG - chr8_3:69488880-69488899 Msa1305810:five_prime_UTR 35.0%
ACGACGACTATGGTTAAAGT+CGG + chr8_3:69486545-69486564 None:intergenic 40.0%
AGGTGAAGAATTGGAATCGA+TGG + chr8_3:69486723-69486742 None:intergenic 40.0%
CCATTTGTGCGAGAAATTCT+TGG + chr8_3:69486789-69486808 None:intergenic 40.0%
CCAAGAATTTCTCGCACAAA+TGG - chr8_3:69486786-69486805 Msa1305810:intron 40.0%
TAACAAAGGGATTCACCGAT+TGG - chr8_3:69486866-69486885 Msa1305810:CDS 40.0%
! AACAAAGGGATTCACCGATT+GGG - chr8_3:69486867-69486886 Msa1305810:CDS 40.0%
TTAGCATTCTCAATCTCGCT+TGG - chr8_3:69487046-69487065 Msa1305810:CDS 40.0%
ACATAAGCATGAGGCTGTTT+GGG - chr8_3:69487275-69487294 Msa1305810:CDS 40.0%
! CCCTTTGGTTGAATTTGTTC+TGG - chr8_3:69487771-69487790 Msa1305810:intron 40.0%
TTCTGGTGATAATTCAGGCA+TGG - chr8_3:69487788-69487807 Msa1305810:intron 40.0%
TCTGGTGATAATTCAGGCAT+GGG - chr8_3:69487789-69487808 Msa1305810:intron 40.0%
!! TTCTTCTGGAATGCTGTTTC+TGG - chr8_3:69487861-69487880 Msa1305810:intron 40.0%
!!! CTTGCTGGCTTTTTTACTTC+AGG - chr8_3:69487891-69487910 Msa1305810:intron 40.0%
CTTCAGGGAAATAATGCAAG+TGG - chr8_3:69487907-69487926 Msa1305810:intron 40.0%
!!! GAAGCATTGACACGAACTTT+TGG - chr8_3:69487934-69487953 Msa1305810:intron 40.0%
GGTATATCCGGTATCATTGT+TGG - chr8_3:69487955-69487974 Msa1305810:intron 40.0%
!! TGATCAGTGTCGATGAACAA+CGG + chr8_3:69488106-69488125 None:intergenic 40.0%
TTGTTCATCGACACTGATCA+TGG - chr8_3:69488106-69488125 Msa1305810:intron 40.0%
ATCATTCTAGGTGGAGAGAA+AGG - chr8_3:69488209-69488228 Msa1305810:intron 40.0%
GCAATTGCATTGTTTGCTTG+CGG - chr8_3:69488368-69488387 Msa1305810:intron 40.0%
CAATTGCATTGTTTGCTTGC+GGG - chr8_3:69488369-69488388 Msa1305810:intron 40.0%
! ACAGGAGGAAGATTTTCACA+TGG - chr8_3:69488696-69488715 Msa1305810:five_prime_UTR 40.0%
!!! CTGGTTTTTTCGAATCAGAC+TGG - chr8_3:69488749-69488768 Msa1305810:five_prime_UTR 40.0%
CGCTTGTATATCCTATTTCG+GGG - chr8_3:69488881-69488900 Msa1305810:five_prime_UTR 40.0%
AAGCAATCAAACACTACAGG+AGG + chr8_3:69488934-69488953 None:intergenic 40.0%
AAAATAAATGTAACCCGCGG+TGG + chr8_3:69488970-69488989 None:intergenic 40.0%
GTGACACTCGAAAACCCAAT+CGG + chr8_3:69486884-69486903 None:intergenic 45.0%
!!! GATTGGGTTTTCGAGTGTCA+CGG - chr8_3:69486883-69486902 Msa1305810:CDS 45.0%
!!! ATTGGGTTTTCGAGTGTCAC+GGG - chr8_3:69486884-69486903 Msa1305810:CDS 45.0%
!!! TTTTCGAGTGTCACGGGTTT+TGG - chr8_3:69486890-69486909 Msa1305810:CDS 45.0%
GGACTTAGTTAGGGTCTGTT+TGG - chr8_3:69487226-69487245 Msa1305810:CDS 45.0%
GACATAAGCATGAGGCTGTT+TGG - chr8_3:69487274-69487293 Msa1305810:CDS 45.0%
CATAAGCATGAGGCTGTTTG+GGG - chr8_3:69487276-69487295 Msa1305810:CDS 45.0%
ATAAGCATGAGGCTGTTTGG+GGG - chr8_3:69487277-69487296 Msa1305810:CDS 45.0%
!! ATCCCGTTATCCCACTTTTG+GGG + chr8_3:69487419-69487438 None:intergenic 45.0%
!! GATCCCGTTATCCCACTTTT+GGG + chr8_3:69487420-69487439 None:intergenic 45.0%
AATCCATCCTTTGCAATCCC+CGG + chr8_3:69487459-69487478 None:intergenic 45.0%
! TTCCATGTTAGCTCTTTCCC+AGG + chr8_3:69487823-69487842 None:intergenic 45.0%
!! GATCAGTGTCGATGAACAAC+GGG + chr8_3:69488105-69488124 None:intergenic 45.0%
TCGCTTGAAGTGGAACTTGT+GGG - chr8_3:69488135-69488154 Msa1305810:intron 45.0%
TCGTGCTCACCGTTGTTTAT+GGG - chr8_3:69488170-69488189 Msa1305810:intron 45.0%
GCAGTGGAAGATAAAAGGCA+TGG + chr8_3:69488541-69488560 None:intergenic 45.0%
TTATCAGATTACGACCACCG+CGG - chr8_3:69488953-69488972 Msa1305810:five_prime_UTR 45.0%
AGGCTGTTTGGGGGAACTTA+TGG - chr8_3:69487286-69487305 Msa1305810:CDS 50.0%
AGGTAGTCAATCCCGGATAG+CGG - chr8_3:69487389-69487408 Msa1305810:intron 50.0%
CGACCCCAAAAGTGGGATAA+CGG - chr8_3:69487413-69487432 Msa1305810:intron 50.0%
GACCCCAAAAGTGGGATAAC+GGG - chr8_3:69487414-69487433 Msa1305810:intron 50.0%
! GGATCCCGTTATCCCACTTT+TGG + chr8_3:69487421-69487440 None:intergenic 50.0%
! ATAACGGGATCCCAGTTAGC+AGG - chr8_3:69487429-69487448 Msa1305810:intron 50.0%
ATCCCAGTTAGCAGGATCAC+CGG - chr8_3:69487437-69487456 Msa1305810:intron 50.0%
CTCCTGGGAAAGAGCTAACA+TGG - chr8_3:69487818-69487837 Msa1305810:intron 50.0%
! GTTTCTGGAAGTGAGCTTGC+TGG - chr8_3:69487876-69487895 Msa1305810:intron 50.0%
ATGGTACTCCTCGCTTGAAG+TGG - chr8_3:69488125-69488144 Msa1305810:intron 50.0%
CACAAGTTCCACTTCAAGCG+AGG + chr8_3:69488136-69488155 None:intergenic 50.0%
CTCGCTTGAAGTGGAACTTG+TGG - chr8_3:69488134-69488153 Msa1305810:intron 50.0%
CTCGTGCTCACCGTTGTTTA+TGG - chr8_3:69488169-69488188 Msa1305810:intron 50.0%
AGGTGGAGAGAAAGGTTACC+CGG - chr8_3:69488217-69488236 Msa1305810:intron 50.0%
TTGTTTGCTTGCGGGCTTAC+TGG - chr8_3:69488377-69488396 Msa1305810:CDS 50.0%
TATCAGATTACGACCACCGC+GGG - chr8_3:69488954-69488973 Msa1305810:five_prime_UTR 50.0%
!!! TCTCGCTTGGTGCTTTTCCC+AGG - chr8_3:69487059-69487078 Msa1305810:CDS 55.0%
!!! TTTTGGGGTCGACCGCTATC+CGG + chr8_3:69487404-69487423 None:intergenic 55.0%
ATAGCGGTCGACCCCAAAAG+TGG - chr8_3:69487405-69487424 Msa1305810:intron 55.0%
TAGCGGTCGACCCCAAAAGT+GGG - chr8_3:69487406-69487425 Msa1305810:intron 55.0%
TCCCAGTTAGCAGGATCACC+GGG - chr8_3:69487438-69487457 Msa1305810:intron 55.0%
AGGATCACCGGGGATTGCAA+AGG - chr8_3:69487449-69487468 Msa1305810:intron 55.0%
TCACCGGGGATTGCAAAGGA+TGG - chr8_3:69487453-69487472 Msa1305810:intron 55.0%
AACGCAGGTCTTGCTGCAGA+AGG + chr8_3:69488314-69488333 None:intergenic 55.0%
GCTTGCGGGCTTACTGGAAA+CGG - chr8_3:69488383-69488402 Msa1305810:CDS 55.0%
!!! ACTGGAAACGGCGCTGGTTT+TGG - chr8_3:69488395-69488414 Msa1305810:CDS 55.0%
!!! ACGGCGCTGGTTTTGGTTTC+TGG - chr8_3:69488402-69488421 Msa1305810:CDS 55.0%
GAATCAGACTGGGAGTGACG+TGG - chr8_3:69488760-69488779 Msa1305810:five_prime_UTR 55.0%
! TTTGGGGTCGACCGCTATCC+GGG + chr8_3:69487403-69487422 None:intergenic 60.0%
CCCCGGTGATCCTGCTAACT+GGG + chr8_3:69487442-69487461 None:intergenic 60.0%
CCCAGTTAGCAGGATCACCG+GGG - chr8_3:69487439-69487458 Msa1305810:intron 60.0%
TCCCCGGTGATCCTGCTAAC+TGG + chr8_3:69487443-69487462 None:intergenic 60.0%
! AGGCATGGGAGTGCACTCCT+GGG - chr8_3:69487803-69487822 Msa1305810:intron 60.0%
CAACGGTGAGCACGAGCTTG+TGG + chr8_3:69488165-69488184 None:intergenic 60.0%
! CAGGCATGGGAGTGCACTCC+TGG - chr8_3:69487802-69487821 Msa1305810:intron 65.0%
GGGCTTACTGGAAACGGCGC+TGG - chr8_3:69488389-69488408 Msa1305810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 69486437 69489013 69486437 ID=Msa1305810;Name=Msa1305810
chr8_3 mRNA 69486437 69489013 69486437 ID=Msa1305810-mRNA-1;Parent=Msa1305810;Name=Msa1305810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=368|1|1|1|1|1|6|236|297
chr8_3 exon 69486437 69486750 69486437 ID=Msa1305810-mRNA-1:exon:21504;Parent=Msa1305810-mRNA-1
chr8_3 exon 69486858 69486939 69486858 ID=Msa1305810-mRNA-1:exon:21503;Parent=Msa1305810-mRNA-1
chr8_3 exon 69487027 69487129 69487027 ID=Msa1305810-mRNA-1:exon:21502;Parent=Msa1305810-mRNA-1
chr8_3 exon 69487212 69487374 69487212 ID=Msa1305810-mRNA-1:exon:21501;Parent=Msa1305810-mRNA-1
chr8_3 exon 69487454 69487645 69487454 ID=Msa1305810-mRNA-1:exon:21500;Parent=Msa1305810-mRNA-1
chr8_3 exon 69488370 69489013 69488370 ID=Msa1305810-mRNA-1:exon:21499;Parent=Msa1305810-mRNA-1
chr8_3 five_prime_UTR 69488646 69489013 69488646 ID=Msa1305810-mRNA-1:five_prime_utr;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69488370 69488645 69488370 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69487454 69487645 69487454 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69487212 69487374 69487212 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69487027 69487129 69487027 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69486858 69486939 69486858 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 CDS 69486673 69486750 69486673 ID=Msa1305810-mRNA-1:cds;Parent=Msa1305810-mRNA-1
chr8_3 three_prime_UTR 69486437 69486672 69486437 ID=Msa1305810-mRNA-1:three_prime_utr;Parent=Msa1305810-mRNA-1
Gene Sequence

>Msa1305810

ATGGTTGAAAAATCGGTGCTATCAATAACAAAGGAAGATTCTTCTTCTTCTACTGGAGTTTTAACAAAGGGATTCACCGATTGGGTTTTCGAGTGTCACGGGTTTTGGCACAATGCTGTTTTAATAATCGCTTCTTTTCTCTTCGTTTTGTATTTGGCTTTTCAAGCGAAGAAGAGCTTTTACAAACTCACCAATGGTCGCTCTTATATCATAATTTCGTATTATGCTTCTCTTTGGCTTGTTAGCATTCTCAATCTCGCTTGGTGCTTTTCCCAGGCATGGGAGTGCACTCCTGGGAAAGAGCTAACATGGAACTTGTTGTCCTTGTTTACTTCTTCTGGAATGCTGTTTCTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAGGGAAATAATGCAAGTGGTGTAGAAGCATTGACACGAACTTTTGGTATATCCGGTATCATTGTTGGTTTTGATGTCCTGTTAAAGGCTATATATCTATTTGCATTTGGGGTCCCGTTGTTCATCGACACTGATCATGGTACTCCTCGCTTGAAGTGGAACTTGTGGGTTATCCACAAGCTCGTGCTCACCGTTGTTTATGGGCTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCCGCAAGACCTGCGTTTTACAAGTATGTTATTATCATGTTCATCTTGAATGCAATTGCATTGTTTGCTTGCGGGCTTACTGGAAACGGCGCTGGTTTTGGTTTCTGGTTTTATCATGTCACTATTGTGTGTTACCATGCCTTTTATCTTCCACTGCTGTATATTACATTTCTGGCAGACTTTTTTCAGGAGGAAGATTTTCACATGGAGAATGTGTATTACTCTGAAATGAAAGATGCTGGTTTTTTCGAATCAGACTGGGAGTGA

Protein sequence

>Msa1305810

MVEKSVLSITKEDSSSSTGVLTKGFTDWVFECHGFWHNAVLIIASFLFVLYLAFQAKKSFYKLTNGRSYIIISYYASLWLVSILNLAWCFSQAWECTPGKELTWNLLSLFTSSGMLFLEVSLLAFLLQGNNASGVEALTRTFGISGIIVGFDVLLKAIYLFAFGVPLFIDTDHGTPRLKWNLWVIHKLVLTVVYGLILFMYHSRWRERLPARPAFYKYVIIMFILNAIALFACGLTGNGAGFGFWFYHVTIVCYHAFYLPLLYITFLADFFQEEDFHMENVYYSEMKDAGFFESDWE*