AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609410 MtrunA17_Chr4g0042041 94.737 247 3 1 1 247 1 237 7.42e-173 475
Msa0609410 MtrunA17_Chr2g0319301 75.100 249 41 6 1 247 1 230 4.00e-122 347
Msa0609410 MtrunA17_Chr2g0323031 48.315 267 92 7 9 247 12 260 5.39e-72 221
Msa0609410 MtrunA17_Chr1g0167821 43.462 260 109 7 5 247 8 246 1.87e-58 186
Msa0609410 MtrunA17_Chr4g0038511 46.789 109 47 2 76 184 6 103 2.86e-20 87.4
Msa0609410 MtrunA17_Chr1g0161461 34.591 159 78 5 35 184 33 174 1.45e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609410 AT5G54680.1 69.880 249 58 4 1 247 1 234 1.38e-116 333
Msa0609410 AT1G51070.1 58.167 251 76 5 1 247 1 226 1.75e-93 274
Msa0609410 AT1G51070.2 64.216 204 54 3 48 247 104 292 5.03e-84 253
Msa0609410 AT4G14410.2 50.259 193 75 5 57 247 104 277 7.30e-52 170
Msa0609410 AT4G14410.3 50.259 193 75 5 57 247 104 277 7.30e-52 170
Msa0609410 AT4G14410.1 50.259 193 75 5 57 247 110 283 8.80e-52 170
Msa0609410 AT3G23210.2 51.546 194 71 6 59 247 116 291 1.58e-51 169
Msa0609410 AT3G23210.1 51.546 194 71 6 59 247 145 320 3.74e-51 169
Msa0609410 AT3G19860.1 33.511 188 80 5 76 234 5 176 1.30e-19 85.9
Msa0609410 AT3G19860.3 33.511 188 80 5 76 234 36 207 2.54e-19 85.5
Msa0609410 AT3G19860.2 33.333 192 83 5 76 238 58 233 2.57e-19 85.9
Msa0609410 AT4G36060.2 38.333 120 63 2 65 184 15 123 1.75e-15 74.3
Msa0609410 AT4G36060.4 33.758 157 84 5 65 217 15 155 1.86e-15 74.3
Msa0609410 AT4G36060.3 33.758 157 84 5 65 217 33 173 3.97e-15 73.6
Msa0609410 AT4G36060.1 38.333 120 63 2 65 184 33 141 4.09e-15 73.6

Find 152 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGGCATCTTTCAACTTT+TGG 0.148107 4_2:+56756776 None:intergenic
AGAAAAGATTAAAGAGTTAA+AGG 0.172284 4_2:-56756743 Msa0609410:intron
GCTGGCTCTGTGCAATTCTT+TGG 0.196795 4_2:-56756283 Msa0609410:three_prime_UTR
TAATTAATTAATGTATAAAA+TGG 0.226417 4_2:+56759200 None:intergenic
CAGTGGCTTCCGTTTGTATT+TGG 0.227327 4_2:-56756185 Msa0609410:three_prime_UTR
GATACAATCTTGAGCTAAAA+TGG 0.237105 4_2:+56756256 None:intergenic
ATTAATGTATAAAATGGTTC+TGG 0.241509 4_2:+56759206 None:intergenic
GAATACTTCTGAATTAATTC+TGG 0.257512 4_2:-56756157 Msa0609410:three_prime_UTR
AACTCCTGGATAACTAATAA+AGG 0.263274 4_2:+56756381 None:intergenic
CTAACAATGTTCATTATATT+AGG 0.280910 4_2:+56756907 None:intergenic
CTAATATAATGAACATTGTT+AGG 0.292021 4_2:-56756906 Msa0609410:CDS
CTGGCTCTGTGCAATTCTTT+GGG 0.297116 4_2:-56756282 Msa0609410:three_prime_UTR
ACTGTTTCGGTGGCCTTGTT+TGG 0.303209 4_2:+56759354 None:intergenic
GAGAATAGACAGAATGAGAT+TGG 0.309621 4_2:+56759278 None:intergenic
GATGGCAGCCTTGTCTGTTT+TGG 0.318102 4_2:+56756843 None:intergenic
GGGGTTGGTAAGTTTATAAA+AGG 0.329416 4_2:-56759387 Msa0609410:five_prime_UTR
TTGTTAGTATGTATTCTAAC+TGG 0.331198 4_2:-56756211 Msa0609410:three_prime_UTR
CCAATTTGTTGCCATGGGCT+TGG 0.333737 4_2:+56756407 None:intergenic
ATTATTTAAGTATTTCATTC+AGG 0.338216 4_2:+56755788 None:intergenic
CCAAGCCCATGGCAACAAAT+TGG 0.353392 4_2:-56756407 Msa0609410:CDS
TCGGTTGCACGAATGAGAAT+TGG 0.358451 4_2:+56759073 None:intergenic
AAATACTTAAATAATACATT+TGG 0.366035 4_2:-56755780 Msa0609410:three_prime_UTR
TTCCTTCCTCTGCCTTCACC+TGG 0.374748 4_2:-56758894 Msa0609410:CDS
CAACTTCTCCCGACATGCTT+TGG 0.380918 4_2:+56757023 None:intergenic
ACCACAGTGCTCATGGTGCT+TGG 0.383975 4_2:-56755836 Msa0609410:three_prime_UTR
CATATGGTATGTTGTTGATA+TGG 0.388909 4_2:-56755892 Msa0609410:three_prime_UTR
TCAACCTTGCTTCCAATGTC+AGG 0.389116 4_2:-56758855 Msa0609410:intron
TGCCGCAGGGAGTGCGGTGG+GGG 0.394894 4_2:+56756444 None:intergenic
TCCGAATGGTGACACAGTTA+AGG 0.403203 4_2:-56756807 Msa0609410:CDS
TGAGAAGAAAGGAGCGAAGA+AGG 0.405548 4_2:+56759100 None:intergenic
GCTGAAATTGATGGCTCGTT+AGG 0.408473 4_2:-56757790 Msa0609410:CDS
GTACCCTTTATTAGTTATCC+AGG 0.420242 4_2:-56756385 Msa0609410:CDS
CTGAAATTGATGGCTCGTTA+GGG 0.421366 4_2:-56757789 Msa0609410:CDS
CAAGGCAGAGAAAGAGAAGT+TGG 0.426792 4_2:-56756512 Msa0609410:CDS
CGGTTGCACGAATGAGAATT+GGG 0.429378 4_2:+56759074 None:intergenic
TTTCCCGGGAAAACACGAAT+TGG 0.429457 4_2:-56758972 Msa0609410:CDS
ACGAATTGGATTAACGATTA+CGG 0.430120 4_2:-56758958 Msa0609410:CDS
AGTAAAGGCACTATAAAGTT+GGG 0.431953 4_2:-56759409 Msa0609410:five_prime_UTR
GCTGCTAGTGCTGAAATTGA+TGG 0.434631 4_2:-56757799 Msa0609410:intron
CGTCCTCCAGTTGCCTAAGC+TGG 0.434808 4_2:-56756301 Msa0609410:exon
GGGCTGAGTGGGCCAGGTGA+AGG 0.436983 4_2:+56758882 None:intergenic
TACTAGCTCCAAAGCATGTC+GGG 0.441749 4_2:-56757031 Msa0609410:CDS
TTAATGTATAAAATGGTTCT+GGG 0.444036 4_2:+56759207 None:intergenic
CCACAGTGCTCATGGTGCTT+GGG 0.445056 4_2:-56755835 Msa0609410:three_prime_UTR
CCCTTAACTGTGTCACCATT+CGG 0.446843 4_2:+56756806 None:intergenic
TCTCGGTACATATCTGAATT+CGG 0.450958 4_2:+56755932 None:intergenic
TAGGGTACGAAATGGTTTCC+CGG 0.451050 4_2:-56758987 Msa0609410:exon
CCGAATGGTGACACAGTTAA+GGG 0.454973 4_2:-56756806 Msa0609410:CDS
AATTGCCACATTGCAACTCC+TGG 0.456516 4_2:+56756367 None:intergenic
CTAACAAAGCAAGAAGGTAT+TGG 0.457115 4_2:+56756227 None:intergenic
ACTCCTGGATAACTAATAAA+GGG 0.460680 4_2:+56756382 None:intergenic
CCATTCGGACAGCATCAATC+AGG 0.463542 4_2:+56756821 None:intergenic
CTACCACAAATCAACTGTTT+CGG 0.463884 4_2:+56759341 None:intergenic
CCACCGAAACAGTTGATTTG+TGG 0.464136 4_2:-56759344 Msa0609410:five_prime_UTR
AGGAAGAGCGAAGGTTGAAT+CGG 0.467851 4_2:+56758912 None:intergenic
TCGTACCCTAGCTACCTTCC+CGG 0.469224 4_2:+56759000 None:intergenic
CGCGATTCGCTGTCACGCGC+CGG 0.470140 4_2:-56759019 Msa0609410:five_prime_UTR
AGAATAGACAGAATGAGATT+GGG 0.473375 4_2:+56759279 None:intergenic
ACAGAGCCAGCTTAGGCAAC+TGG 0.474028 4_2:+56756295 None:intergenic
ATTCGGTTCGTGTGAGTACA+AGG 0.477260 4_2:+56755949 None:intergenic
TCTGACAGTCTCAAAGAGTC+TGG 0.477676 4_2:-56757763 Msa0609410:CDS
TATTGAACTAGGCTCCATCT+TGG 0.477914 4_2:-56756881 Msa0609410:CDS
AATGCCGCAGGGAGTGCGGT+GGG 0.478526 4_2:+56756442 None:intergenic
CCTTGTGCAGCAAATGCCGC+AGG 0.484770 4_2:+56756430 None:intergenic
CTAGGCTCCATCTTGGAGCC+TGG 0.485022 4_2:-56756874 Msa0609410:CDS
CAAATACAAACGGAAGCCAC+TGG 0.486092 4_2:+56756186 None:intergenic
AAGTAAAGGCACTATAAAGT+TGG 0.486496 4_2:-56759410 Msa0609410:five_prime_UTR
GACATTGGAAGCAAGGTTGA+AGG 0.488201 4_2:+56758858 None:intergenic
TACAAATGTTTAAACAATCA+AGG 0.489822 4_2:-56756024 Msa0609410:three_prime_UTR
AGGGTACCAATTTGTTGCCA+TGG 0.491389 4_2:+56756401 None:intergenic
AGCAAGAAGGTATTGGTGAT+AGG 0.493895 4_2:+56756234 None:intergenic
GGGTACCAATTTGTTGCCAT+GGG 0.498672 4_2:+56756402 None:intergenic
TTCGCTGTCACGCGCCGGGA+AGG 0.500884 4_2:-56759014 Msa0609410:five_prime_UTR
GCGAAGGTTGAATCGGGAAC+GGG 0.501622 4_2:+56758919 None:intergenic
CACGCGCCGGGAAGGTAGCT+AGG 0.504584 4_2:-56759006 Msa0609410:five_prime_UTR
AACAATCAAGGAATGAAAAG+TGG 0.506211 4_2:-56756012 Msa0609410:three_prime_UTR
GAAAAGAAAAGAAAAGGGTG+GGG 0.506703 4_2:+56759235 None:intergenic
GATATTAAACCTCCACGCTC+TGG 0.514052 4_2:-56755859 Msa0609410:three_prime_UTR
GCGATTCGCTGTCACGCGCC+GGG 0.514647 4_2:-56759018 Msa0609410:five_prime_UTR
ACATTGGAAGCAAGGTTGAA+GGG 0.515771 4_2:+56758859 None:intergenic
GTGTGGTGTTGAAGTACATA+TGG 0.517533 4_2:-56755908 Msa0609410:three_prime_UTR
AGTGGGCCAGGTGAAGGCAG+AGG 0.522430 4_2:+56758888 None:intergenic
AGAAAAGAAAAGAAAAGGGT+GGG 0.522591 4_2:+56759234 None:intergenic
TTGGATCGATGTTGCACCAA+GGG 0.523151 4_2:-56755761 Msa0609410:three_prime_UTR
GCTCCATCTTGGAGCCTGGA+AGG 0.524851 4_2:-56756870 Msa0609410:CDS
ATTGTTAGGTTTATTGAACT+AGG 0.530194 4_2:-56756892 Msa0609410:CDS
GCTCTGGACCACAGTGCTCA+TGG 0.532824 4_2:-56755843 Msa0609410:three_prime_UTR
ATTCATAAGCCAAATACAAA+CGG 0.533567 4_2:+56756176 None:intergenic
GGAAGAGCGAAGGTTGAATC+GGG 0.533818 4_2:+56758913 None:intergenic
CCTGCGGCATTTGCTGCACA+AGG 0.540694 4_2:-56756430 Msa0609410:CDS
AAATGCCGCAGGGAGTGCGG+TGG 0.545674 4_2:+56756441 None:intergenic
ATTTATGCCACCTGCTGCAG+TGG 0.547258 4_2:-56756347 Msa0609410:CDS
AAGAAAAGAAAAGAAAAGGG+TGG 0.547273 4_2:+56759233 None:intergenic
TGTGAGGTATCCACTGCAGC+AGG 0.547849 4_2:+56756337 None:intergenic
AAGGTAGCTAGGGTACGAAA+TGG 0.548343 4_2:-56758995 Msa0609410:exon
ATCAAGGAATGAAAAGTGGA+AGG 0.551396 4_2:-56756008 Msa0609410:three_prime_UTR
AGGGTACGAAATGGTTTCCC+GGG 0.553844 4_2:-56758986 Msa0609410:exon
ATGCCGCAGGGAGTGCGGTG+GGG 0.554371 4_2:+56756443 None:intergenic
AGCAAATGCCGCAGGGAGTG+CGG 0.555070 4_2:+56756438 None:intergenic
AAAGTTGAAAGATGCCAACT+CGG 0.556876 4_2:-56756773 Msa0609410:CDS
GGCAGAGGAAGGAAGAGCGA+AGG 0.557011 4_2:+56758903 None:intergenic
TACTTCAACACCACACATCT+CGG 0.557939 4_2:+56755915 None:intergenic
CTACTAGCTCCAAAGCATGT+CGG 0.561189 4_2:-56757032 Msa0609410:CDS
GAATTGGGAATTGAGAAGAA+AGG 0.565106 4_2:+56759089 None:intergenic
CATTGGAAGCAAGGTTGAAG+GGG 0.566545 4_2:+56758860 None:intergenic
GAATTGCACAGAGCCAGCTT+AGG 0.566848 4_2:+56756288 None:intergenic
GGGTTGGTAAGTTTATAAAA+GGG 0.572812 4_2:-56759386 Msa0609410:five_prime_UTR
GGCCAGGTGAAGGCAGAGGA+AGG 0.573845 4_2:+56758892 None:intergenic
AGGCCTTCCAGGCTCCAAGA+TGG 0.576941 4_2:+56756867 None:intergenic
GCTGCACAAGGCCAAGCCCA+TGG 0.577267 4_2:-56756418 Msa0609410:CDS
CCACAAATCAACTGTTTCGG+TGG 0.581810 4_2:+56759344 None:intergenic
AGCGAAGGTTGAATCGGGAA+CGG 0.583174 4_2:+56758918 None:intergenic
AAGAGTCTGGTTCAAAGAAG+AGG 0.585185 4_2:-56757750 Msa0609410:intron
AAGCAGACTCAATTGACCCT+TGG 0.588041 4_2:+56755745 None:intergenic
GAGCACTGTGGTCCAGAGCG+TGG 0.589753 4_2:+56755847 None:intergenic
AAAAGAAAAGAAAAGGGTGG+GGG 0.590639 4_2:+56759236 None:intergenic
TGCTGCAGTGGATACCTCAC+AGG 0.591418 4_2:-56756335 Msa0609410:CDS
GTAAAGGCACTATAAAGTTG+GGG 0.594343 4_2:-56759408 Msa0609410:five_prime_UTR
ATTGGAAGCAAGGTTGAAGG+GGG 0.596778 4_2:+56758861 None:intergenic
TTTAAGTATTTCATTCAGGT+AGG 0.597087 4_2:+56755792 None:intergenic
AAGTTGAAAGATGCCAACTC+GGG 0.605070 4_2:-56756772 Msa0609410:CDS
CAGACCTGACATTGGAAGCA+AGG 0.608712 4_2:+56758851 None:intergenic
AAATACAAACGGAAGCCACT+GGG 0.608993 4_2:+56756187 None:intergenic
TACATACTAACAAAGCAAGA+AGG 0.610881 4_2:+56756221 None:intergenic
TAAAGGCACTATAAAGTTGG+GGG 0.612334 4_2:-56759407 Msa0609410:five_prime_UTR
CTTGTGCAGCAAATGCCGCA+GGG 0.618158 4_2:+56756431 None:intergenic
AATGAGTACAGACCTGACAT+TGG 0.621004 4_2:+56758843 None:intergenic
ACGCGCCGGGAAGGTAGCTA+GGG 0.621763 4_2:-56759005 Msa0609410:five_prime_UTR
TGAAATTGATGGCTCGTTAG+GGG 0.622534 4_2:-56757788 Msa0609410:CDS
TCAAGGAATGAAAAGTGGAA+GGG 0.625572 4_2:-56756007 Msa0609410:three_prime_UTR
CCTGATTGATGCTGTCCGAA+TGG 0.625819 4_2:-56756821 Msa0609410:CDS
TGACGAGAAACAGAGGCTCA+AGG 0.635039 4_2:-56756530 Msa0609410:CDS
AGGGTAAGTAAGTCCAAACA+AGG 0.647884 4_2:-56759367 Msa0609410:five_prime_UTR
CGAATGGTGACACAGTTAAG+GGG 0.650749 4_2:-56756805 Msa0609410:CDS
GAGGTATCCACTGCAGCAGG+TGG 0.651341 4_2:+56756340 None:intergenic
AAGGCCTGCCAAAACAGACA+AGG 0.656526 4_2:-56756851 Msa0609410:CDS
AACTTCGTGACGAGAAACAG+AGG 0.668282 4_2:-56756537 Msa0609410:CDS
CACTGTGGTCCAGAGCGTGG+AGG 0.668517 4_2:+56755850 None:intergenic
TCGGACAGCATCAATCAGGA+TGG 0.668544 4_2:+56756825 None:intergenic
TTCGGTTCGTGTGAGTACAA+GGG 0.674407 4_2:+56755950 None:intergenic
TTTGGATCGATGTTGCACCA+AGG 0.675358 4_2:-56755762 Msa0609410:three_prime_UTR
GTGCTTGGGTCACTATTGTG+AGG 0.676661 4_2:-56755821 Msa0609410:three_prime_UTR
GTTATCCAGGAGTTGCAATG+TGG 0.686227 4_2:-56756372 Msa0609410:CDS
AGGCAAACGATAATCTAGTG+AGG 0.695421 4_2:-56756091 Msa0609410:three_prime_UTR
GAGCCAGCTTAGGCAACTGG+AGG 0.695906 4_2:+56756298 None:intergenic
TGTATTCTAACTGGACCCAG+TGG 0.707527 4_2:-56756202 Msa0609410:three_prime_UTR
TTGGAAGCAAGGTTGAAGGG+GGG 0.709273 4_2:+56758862 None:intergenic
AAAGGCACTATAAAGTTGGG+GGG 0.718000 4_2:-56759406 Msa0609410:five_prime_UTR
GGGGTAGGCAAGAAACTAGG+TGG 0.721390 4_2:+56756463 None:intergenic
CAGATATGTACCGAGATGTG+TGG 0.730683 4_2:-56755925 Msa0609410:three_prime_UTR
ACGAAGTACATGATCCTGTG+AGG 0.733239 4_2:+56756321 None:intergenic
CCCAAGCACCATGAGCACTG+TGG 0.763050 4_2:+56755835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATGAAAATTATTTCAA+TGG - chr4_2:56756884-56756903 Msa0609410:CDS 10.0%
!! TTTAAGAAATAAAAATTGAA+GGG + chr4_2:56758543-56758562 None:intergenic 10.0%
!!! TTTTAAGAAATAAAAATTGA+AGG + chr4_2:56758544-56758563 None:intergenic 10.0%
!! AAATACTTAAATAATACATT+TGG - chr4_2:56759400-56759419 Msa0609410:five_prime_UTR 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756360-56756379 None:intergenic 100.0%
!! AAAAAGAAAAGAAAAGAAAA+GGG + chr4_2:56755953-56755972 None:intergenic 15.0%
!! ATAAATCTCAAATTATCATA+GGG + chr4_2:56756523-56756542 None:intergenic 15.0%
!! AATAAATCTCAAATTATCAT+AGG + chr4_2:56756524-56756543 None:intergenic 15.0%
!!! ATATTTTTAATGCTGAATAT+TGG - chr4_2:56756591-56756610 Msa0609410:intron 15.0%
!!! TATTTTTCTTTACCTAAAAA+AGG - chr4_2:56757524-56757543 Msa0609410:intron 15.0%
!! GTATTAAAAAACAAATTTCT+AGG - chr4_2:56758608-56758627 Msa0609410:intron 15.0%
!! ATTATTTAAGTATTTCATTC+AGG + chr4_2:56759395-56759414 None:intergenic 15.0%
!! GAAAAAGAAAAGAAAAGAAA+AGG + chr4_2:56755954-56755973 None:intergenic 20.0%
!! TTAATGTATAAAATGGTTCT+GGG + chr4_2:56755976-56755995 None:intergenic 20.0%
!! ATTAATGTATAAAATGGTTC+TGG + chr4_2:56755977-56755996 None:intergenic 20.0%
!! TTAAAACCCTAATTATGAAA+GGG + chr4_2:56756394-56756413 None:intergenic 20.0%
!! ATTAAAACCCTAATTATGAA+AGG + chr4_2:56756395-56756414 None:intergenic 20.0%
!!! TTTCATAATTAGGGTTTTAA+TGG - chr4_2:56756394-56756413 Msa0609410:CDS 20.0%
!!! ATTTTTTGTTTCTTACTTCA+CGG - chr4_2:56756462-56756481 Msa0609410:CDS 20.0%
!!! TGTTTTCATAACAGTTATAT+AGG + chr4_2:56756805-56756824 None:intergenic 20.0%
!! AAAATTATTTCAATGGAAGT+TGG - chr4_2:56756891-56756910 Msa0609410:CDS 20.0%
!! ATTTGCATTATGGTATTTAT+AGG - chr4_2:56757279-56757298 Msa0609410:intron 20.0%
!!! AATTGTTTAGTTCAATGAAA+GGG + chr4_2:56757479-56757498 None:intergenic 20.0%
!!! AAATTGTTTAGTTCAATGAA+AGG + chr4_2:56757480-56757499 None:intergenic 20.0%
!! AGAATAAAGATAACATGTAT+AGG - chr4_2:56757563-56757582 Msa0609410:intron 20.0%
!! CAAGTAAAACAAAACATATT+GGG + chr4_2:56757637-56757656 None:intergenic 20.0%
!! ACAAGTAAAACAAAACATAT+TGG + chr4_2:56757638-56757657 None:intergenic 20.0%
!! AATCATTATTGTAGTATACA+TGG + chr4_2:56757721-56757740 None:intergenic 20.0%
!! ATGTATACTACAATAATGAT+TGG - chr4_2:56757720-56757739 Msa0609410:intron 20.0%
!! AATTGCACTAATAATTAAGT+TGG + chr4_2:56757861-56757880 None:intergenic 20.0%
!! CTAACAATGTTCATTATATT+AGG + chr4_2:56758276-56758295 None:intergenic 20.0%
!! CTAATATAATGAACATTGTT+AGG - chr4_2:56758274-56758293 Msa0609410:intron 20.0%
!! AGAAAAGATTAAAGAGTTAA+AGG - chr4_2:56758437-56758456 Msa0609410:intron 20.0%
!!! CGATAATTTTTTCTTGTTTT+TGG - chr4_2:56759116-56759135 Msa0609410:five_prime_UTR 20.0%
!! TACAAATGTTTAAACAATCA+AGG - chr4_2:56759156-56759175 Msa0609410:five_prime_UTR 20.0%
!!! TGATTTTGATTTTGAGAATG+AGG + chr4_2:56756134-56756153 None:intergenic 25.0%
! TAAAACCCTAATTATGAAAG+GGG + chr4_2:56756393-56756412 None:intergenic 25.0%
!!! TTTTTTGTTTCTTACTTCAC+GGG - chr4_2:56756463-56756482 Msa0609410:CDS 25.0%
! AAATAATCAAACCATGCAAA+TGG + chr4_2:56756699-56756718 None:intergenic 25.0%
! TACAAGTAAGTTTCAACAAT+AGG + chr4_2:56756932-56756951 None:intergenic 25.0%
!! CAAATATACAAGTTTTGCAA+AGG + chr4_2:56756979-56756998 None:intergenic 25.0%
! AAACTTGTATATTTGTGATG+AGG - chr4_2:56756984-56757003 Msa0609410:intron 25.0%
! ACTACACTACTAAAAAATCT+GGG + chr4_2:56757069-56757088 None:intergenic 25.0%
! TATCCTCTTGATATAAAACA+TGG + chr4_2:56757246-56757265 None:intergenic 25.0%
!! ATGTTTTATATCAAGAGGAT+AGG - chr4_2:56757245-56757264 Msa0609410:intron 25.0%
!! TGTTTTATATCAAGAGGATA+GGG - chr4_2:56757246-56757265 Msa0609410:intron 25.0%
! GATTAGAACAATTTGCATTA+TGG - chr4_2:56757269-56757288 Msa0609410:intron 25.0%
! TGACATGTAAATTCATATAG+AGG + chr4_2:56757311-56757330 None:intergenic 25.0%
! ATCTCCTAAAGATTTAAACA+GGG + chr4_2:56757674-56757693 None:intergenic 25.0%
! AATCTCCTAAAGATTTAAAC+AGG + chr4_2:56757675-56757694 None:intergenic 25.0%
! TAGTATACATGGAAAGAAAA+CGG + chr4_2:56757710-56757729 None:intergenic 25.0%
! AAACTGCAAGGAAAAATTAA+TGG + chr4_2:56757955-56757974 None:intergenic 25.0%
!!! TTTTTCCTTGCAGTTTTTTT+AGG - chr4_2:56757959-56757978 Msa0609410:intron 25.0%
! ATTGTTAGGTTTATTGAACT+AGG - chr4_2:56758288-56758307 Msa0609410:intron 25.0%
! GTGAAGTCTCAATTTATATT+CGG - chr4_2:56758459-56758478 Msa0609410:intron 25.0%
! TGAAGTCTCAATTTATATTC+GGG - chr4_2:56758460-56758479 Msa0609410:intron 25.0%
! TTTCTTTGTAAATTTGCATG+TGG - chr4_2:56758487-56758506 Msa0609410:intron 25.0%
!! TGAGTTTTTCATTCAACAAT+AGG + chr4_2:56758579-56758598 None:intergenic 25.0%
! TTGTTAGTATGTATTCTAAC+TGG - chr4_2:56758969-56758988 Msa0609410:CDS 25.0%
! ATTCATAAGCCAAATACAAA+CGG + chr4_2:56759007-56759026 None:intergenic 25.0%
! GAATACTTCTGAATTAATTC+TGG - chr4_2:56759023-56759042 Msa0609410:five_prime_UTR 25.0%
! TTTAAGTATTTCATTCAGGT+AGG + chr4_2:56759391-56759410 None:intergenic 25.0%
!! AAGTAAAGGCACTATAAAGT+TGG - chr4_2:56755770-56755789 Msa0609410:three_prime_UTR 30.0%
!! AGTAAAGGCACTATAAAGTT+GGG - chr4_2:56755771-56755790 Msa0609410:three_prime_UTR 30.0%
!! GGGTTGGTAAGTTTATAAAA+GGG - chr4_2:56755794-56755813 Msa0609410:three_prime_UTR 30.0%
AGAATAGACAGAATGAGATT+GGG + chr4_2:56755904-56755923 None:intergenic 30.0%
AGAAAAGAAAAGAAAAGGGT+GGG + chr4_2:56755949-56755968 None:intergenic 30.0%
AAGAAAAGAAAAGAAAAGGG+TGG + chr4_2:56755950-56755969 None:intergenic 30.0%
!! TTGATTTTGAGAATGAGGTT+CGG + chr4_2:56756129-56756148 None:intergenic 30.0%
ACGAATTGGATTAACGATTA+CGG - chr4_2:56756222-56756241 Msa0609410:three_prime_UTR 30.0%
AAAACCCTAATTATGAAAGG+GGG + chr4_2:56756392-56756411 None:intergenic 30.0%
GATTATAGTACACTAGTATC+TGG + chr4_2:56756641-56756660 None:intergenic 30.0%
!!! CTAAGTTCTCTACTAGTTTT+AGG - chr4_2:56756672-56756691 Msa0609410:intron 30.0%
TTGCACAAACAAAACAAACT+AGG + chr4_2:56757010-56757029 None:intergenic 30.0%
!!! AGTTTGTTTTGTTTGTGCAA+TGG - chr4_2:56757010-56757029 Msa0609410:CDS 30.0%
CACTACACTACTAAAAAATC+TGG + chr4_2:56757070-56757089 None:intergenic 30.0%
!!! CAGATTTTTTAGTAGTGTAG+TGG - chr4_2:56757068-56757087 Msa0609410:intron 30.0%
! GTTTTATATCAAGAGGATAG+GGG - chr4_2:56757247-56757266 Msa0609410:intron 30.0%
! TTTAGTTCAATGAAAGGGAA+GGG + chr4_2:56757474-56757493 None:intergenic 30.0%
TACTCCCTGTTTAAATCTTT+AGG - chr4_2:56757667-56757686 Msa0609410:intron 30.0%
ACTCCAGAAATCATATCATA+GGG - chr4_2:56758064-56758083 Msa0609410:intron 30.0%
TCTTGTTAATTTCTTGTTGC+AGG - chr4_2:56758103-56758122 Msa0609410:intron 30.0%
CTTGTTAATTTCTTGTTGCA+GGG - chr4_2:56758104-56758123 Msa0609410:intron 30.0%
ACTCCTGGATAACTAATAAA+GGG + chr4_2:56758801-56758820 None:intergenic 30.0%
AACTCCTGGATAACTAATAA+AGG + chr4_2:56758802-56758821 None:intergenic 30.0%
GATACAATCTTGAGCTAAAA+TGG + chr4_2:56758927-56758946 None:intergenic 30.0%
TACATACTAACAAAGCAAGA+AGG + chr4_2:56758962-56758981 None:intergenic 30.0%
AACAATCAAGGAATGAAAAG+TGG - chr4_2:56759168-56759187 Msa0609410:five_prime_UTR 30.0%
!!! GGGTGTTTTTGTTTTAAACT+TGG - chr4_2:56759193-56759212 Msa0609410:five_prime_UTR 30.0%
CATATGGTATGTTGTTGATA+TGG - chr4_2:56759288-56759307 Msa0609410:five_prime_UTR 30.0%
!! GTAAAGGCACTATAAAGTTG+GGG - chr4_2:56755772-56755791 Msa0609410:three_prime_UTR 35.0%
!! TAAAGGCACTATAAAGTTGG+GGG - chr4_2:56755773-56755792 Msa0609410:three_prime_UTR 35.0%
!! GGGGTTGGTAAGTTTATAAA+AGG - chr4_2:56755793-56755812 Msa0609410:three_prime_UTR 35.0%
CTACCACAAATCAACTGTTT+CGG + chr4_2:56755842-56755861 None:intergenic 35.0%
GAGAATAGACAGAATGAGAT+TGG + chr4_2:56755905-56755924 None:intergenic 35.0%
AAAAGAAAAGAAAAGGGTGG+GGG + chr4_2:56755947-56755966 None:intergenic 35.0%
GAAAAGAAAAGAAAAGGGTG+GGG + chr4_2:56755948-56755967 None:intergenic 35.0%
GAATTGGGAATTGAGAAGAA+AGG + chr4_2:56756094-56756113 None:intergenic 35.0%
! TAATCCAATTCGTGTTTTCC+CGG + chr4_2:56756215-56756234 None:intergenic 35.0%
AAACCCTAATTATGAAAGGG+GGG + chr4_2:56756391-56756410 None:intergenic 35.0%
CTAGTAGAGAACTTAGTGTT+AGG + chr4_2:56756668-56756687 None:intergenic 35.0%
!!! TAGTTTTAGGTCCATTTGCA+TGG - chr4_2:56756685-56756704 Msa0609410:intron 35.0%
AACAAGAAAGAATGTTGAGG+TGG - chr4_2:56756840-56756859 Msa0609410:CDS 35.0%
TGGAGTAGAAAATGAATTGC+TGG - chr4_2:56757030-56757049 Msa0609410:CDS 35.0%
TAGTAGTGTAGTGGTTTGAA+TGG - chr4_2:56757077-56757096 Msa0609410:intron 35.0%
TACCCATGTTATGAGGAATT+GGG + chr4_2:56757193-56757212 None:intergenic 35.0%
ACAAATGTACCCATGTTATG+AGG + chr4_2:56757200-56757219 None:intergenic 35.0%
TCATAACATGGGTACATTTG+TGG - chr4_2:56757199-56757218 Msa0609410:intron 35.0%
! GCACCATGTTTTATATCAAG+AGG - chr4_2:56757240-56757259 Msa0609410:intron 35.0%
TTAGTTCAATGAAAGGGAAG+GGG + chr4_2:56757473-56757492 None:intergenic 35.0%
! GTTTAGTTCAATGAAAGGGA+AGG + chr4_2:56757475-56757494 None:intergenic 35.0%
GATTGGAGACTGAGATTAAA+AGG - chr4_2:56757737-56757756 Msa0609410:intron 35.0%
AATCAAGATGACAAGTCCTA+AGG - chr4_2:56757900-56757919 Msa0609410:intron 35.0%
!!! GTTTTTTTAGGCCAACTTTC+CGG - chr4_2:56757971-56757990 Msa0609410:intron 35.0%
AGTAGTCAATGCTACAAGAT+GGG + chr4_2:56758008-56758027 None:intergenic 35.0%
TATTCAAACCCCAAAATGAC+TGG - chr4_2:56758037-56758056 Msa0609410:intron 35.0%
CACTCCAGAAATCATATCAT+AGG - chr4_2:56758063-56758082 Msa0609410:intron 35.0%
CTCCAGAAATCATATCATAG+GGG - chr4_2:56758065-56758084 Msa0609410:intron 35.0%
TTCCCCTATGATATGATTTC+TGG + chr4_2:56758070-56758089 None:intergenic 35.0%
CATTATATTAGGTACACACC+TGG + chr4_2:56758265-56758284 None:intergenic 35.0%
! GTTGGCATCTTTCAACTTTT+GGG + chr4_2:56758406-56758425 None:intergenic 35.0%
! AGTTGGCATCTTTCAACTTT+TGG + chr4_2:56758407-56758426 None:intergenic 35.0%
AAAGTTGAAAGATGCCAACT+CGG - chr4_2:56758407-56758426 Msa0609410:intron 35.0%
GTACCCTTTATTAGTTATCC+AGG - chr4_2:56758795-56758814 Msa0609410:intron 35.0%
! CTAACAAAGCAAGAAGGTAT+TGG + chr4_2:56758956-56758975 None:intergenic 35.0%
!! GTTTCGTATCAGTTTTAGTG+AGG - chr4_2:56759069-56759088 Msa0609410:five_prime_UTR 35.0%
!!! CTTGTTTTTGGCTTGCAAAA+CGG - chr4_2:56759128-56759147 Msa0609410:five_prime_UTR 35.0%
!!! TTGTTTTTGGCTTGCAAAAC+GGG - chr4_2:56759129-56759148 Msa0609410:five_prime_UTR 35.0%
ATCAAGGAATGAAAAGTGGA+AGG - chr4_2:56759172-56759191 Msa0609410:five_prime_UTR 35.0%
TCAAGGAATGAAAAGTGGAA+GGG - chr4_2:56759173-56759192 Msa0609410:five_prime_UTR 35.0%
TCTCGGTACATATCTGAATT+CGG + chr4_2:56759251-56759270 None:intergenic 35.0%
!! AAAGGCACTATAAAGTTGGG+GGG - chr4_2:56755774-56755793 Msa0609410:three_prime_UTR 40.0%
AGGGTAAGTAAGTCCAAACA+AGG - chr4_2:56755813-56755832 Msa0609410:three_prime_UTR 40.0%
AGCGAAGAAGGAGAAAAAGA+GGG + chr4_2:56756071-56756090 None:intergenic 40.0%
! AATCCAATTCGTGTTTTCCC+GGG + chr4_2:56756214-56756233 None:intergenic 40.0%
ACATTGGAAGCAAGGTTGAA+GGG + chr4_2:56756324-56756343 None:intergenic 40.0%
AATGAGTACAGACCTGACAT+TGG + chr4_2:56756340-56756359 None:intergenic 40.0%
AACCCTAATTATGAAAGGGG+GGG + chr4_2:56756390-56756409 None:intergenic 40.0%
! ATAGTCCTCGATTTGTCTCA+TGG - chr4_2:56756721-56756740 Msa0609410:intron 40.0%
GCGAACAAGAAAGAATGTTG+AGG - chr4_2:56756837-56756856 Msa0609410:CDS 40.0%
AGAAAGAATGTTGAGGTGGA+TGG - chr4_2:56756844-56756863 Msa0609410:CDS 40.0%
GAAAGAATGTTGAGGTGGAT+GGG - chr4_2:56756845-56756864 Msa0609410:CDS 40.0%
TAGTGTAGTGGTTTGAATGG+AGG - chr4_2:56757080-56757099 Msa0609410:intron 40.0%
TTCCCCAATTCCTCATAACA+TGG - chr4_2:56757187-56757206 Msa0609410:intron 40.0%
TCCCCAATTCCTCATAACAT+GGG - chr4_2:56757188-56757207 Msa0609410:intron 40.0%
ACCCATGTTATGAGGAATTG+GGG + chr4_2:56757192-56757211 None:intergenic 40.0%
GTACCCATGTTATGAGGAAT+TGG + chr4_2:56757194-56757213 None:intergenic 40.0%
AACATGGGTACATTTGTGGT+TGG - chr4_2:56757203-56757222 Msa0609410:intron 40.0%
! CTGAAATTGATGGCTCGTTA+GGG - chr4_2:56757391-56757410 Msa0609410:intron 40.0%
! TGAAATTGATGGCTCGTTAG+GGG - chr4_2:56757392-56757411 Msa0609410:intron 40.0%
! AAGAGTCTGGTTCAAAGAAG+AGG - chr4_2:56757430-56757449 Msa0609410:intron 40.0%
TAGTTCAATGAAAGGGAAGG+GGG + chr4_2:56757472-56757491 None:intergenic 40.0%
GATTTAAACAGGGAGTAGCT+AGG + chr4_2:56757664-56757683 None:intergenic 40.0%
CTGAGATTAAAAGGCAGTGT+TGG - chr4_2:56757746-56757765 Msa0609410:intron 40.0%
TCCTATTTGTATCGCTAGCA+AGG + chr4_2:56757793-56757812 None:intergenic 40.0%
GATAACATATGCAACGCCTT+AGG + chr4_2:56757919-56757938 None:intergenic 40.0%
! AGGCGTTGCATATGTTATCT+TGG - chr4_2:56757920-56757939 Msa0609410:intron 40.0%
! GTTGGCCTAAAAAAACTGCA+AGG + chr4_2:56757967-56757986 None:intergenic 40.0%
GAAAGATAATGCCGGAAAGT+TGG + chr4_2:56757985-56758004 None:intergenic 40.0%
AAGATGGGGAAAGATAATGC+CGG + chr4_2:56757993-56758012 None:intergenic 40.0%
GTAGTCAATGCTACAAGATG+GGG + chr4_2:56758007-56758026 None:intergenic 40.0%
CAGTAGTCAATGCTACAAGA+TGG + chr4_2:56758009-56758028 None:intergenic 40.0%
!! GAGTGAATCCAGTCATTTTG+GGG + chr4_2:56758048-56758067 None:intergenic 40.0%
!! GGAGTGAATCCAGTCATTTT+GGG + chr4_2:56758049-56758068 None:intergenic 40.0%
! TGGAGTGAATCCAGTCATTT+TGG + chr4_2:56758050-56758069 None:intergenic 40.0%
TATTGAACTAGGCTCCATCT+TGG - chr4_2:56758299-56758318 Msa0609410:intron 40.0%
AAGTTGAAAGATGCCAACTC+GGG - chr4_2:56758408-56758427 Msa0609410:intron 40.0%
!! AGCAAGAAGGTATTGGTGAT+AGG + chr4_2:56758949-56758968 None:intergenic 40.0%
AAATACAAACGGAAGCCACT+GGG + chr4_2:56758996-56759015 None:intergenic 40.0%
AGGCAAACGATAATCTAGTG+AGG - chr4_2:56759089-56759108 Msa0609410:five_prime_UTR 40.0%
!!! TGTTTTTGGCTTGCAAAACG+GGG - chr4_2:56759130-56759149 Msa0609410:five_prime_UTR 40.0%
TACTTCAACACCACACATCT+CGG + chr4_2:56759268-56759287 None:intergenic 40.0%
! GTGTGGTGTTGAAGTACATA+TGG - chr4_2:56759272-56759291 Msa0609410:five_prime_UTR 40.0%
CCACAAATCAACTGTTTCGG+TGG + chr4_2:56755839-56755858 None:intergenic 45.0%
!! CCACCGAAACAGTTGATTTG+TGG - chr4_2:56755836-56755855 Msa0609410:three_prime_UTR 45.0%
GCGAAGAAGGAGAAAAAGAG+GGG + chr4_2:56756070-56756089 None:intergenic 45.0%
GAGCGAAGAAGGAGAAAAAG+AGG + chr4_2:56756072-56756091 None:intergenic 45.0%
TGAGAAGAAAGGAGCGAAGA+AGG + chr4_2:56756083-56756102 None:intergenic 45.0%
CGGTTGCACGAATGAGAATT+GGG + chr4_2:56756109-56756128 None:intergenic 45.0%
TCGGTTGCACGAATGAGAAT+TGG + chr4_2:56756110-56756129 None:intergenic 45.0%
AAGGTAGCTAGGGTACGAAA+TGG - chr4_2:56756185-56756204 Msa0609410:three_prime_UTR 45.0%
TAGGGTACGAAATGGTTTCC+CGG - chr4_2:56756193-56756212 Msa0609410:three_prime_UTR 45.0%
TTTCCCGGGAAAACACGAAT+TGG - chr4_2:56756208-56756227 Msa0609410:three_prime_UTR 45.0%
AGGAAGAGCGAAGGTTGAAT+CGG + chr4_2:56756271-56756290 None:intergenic 45.0%
ATTGGAAGCAAGGTTGAAGG+GGG + chr4_2:56756322-56756341 None:intergenic 45.0%
CATTGGAAGCAAGGTTGAAG+GGG + chr4_2:56756323-56756342 None:intergenic 45.0%
GACATTGGAAGCAAGGTTGA+AGG + chr4_2:56756325-56756344 None:intergenic 45.0%
TCAACCTTGCTTCCAATGTC+AGG - chr4_2:56756325-56756344 Msa0609410:CDS 45.0%
ACCCTAATTATGAAAGGGGG+GGG + chr4_2:56756389-56756408 None:intergenic 45.0%
CTCGTGCTAGATGGATGAAA+TGG - chr4_2:56756745-56756764 Msa0609410:CDS 45.0%
! TTCAATGGAAGTTGGTCTGC+AGG - chr4_2:56756899-56756918 Msa0609410:CDS 45.0%
! GCTGCTAGTGCTGAAATTGA+TGG - chr4_2:56757381-56757400 Msa0609410:intron 45.0%
! GCTGAAATTGATGGCTCGTT+AGG - chr4_2:56757390-56757409 Msa0609410:intron 45.0%
TCTGACAGTCTCAAAGAGTC+TGG - chr4_2:56757417-56757436 Msa0609410:intron 45.0%
!!! CGCACGCTGATTCCTTTTTT+AGG + chr4_2:56757539-56757558 None:intergenic 45.0%
GCCTTGCTAGCGATACAAAT+AGG - chr4_2:56757789-56757808 Msa0609410:CDS 45.0%
CTACTAGCTCCAAAGCATGT+CGG - chr4_2:56758148-56758167 Msa0609410:intron 45.0%
TACTAGCTCCAAAGCATGTC+GGG - chr4_2:56758149-56758168 Msa0609410:intron 45.0%
CAACAAGGAAAGAGAGAGAC+GGG + chr4_2:56758233-56758252 None:intergenic 45.0%
GCAACAAGGAAAGAGAGAGA+CGG + chr4_2:56758234-56758253 None:intergenic 45.0%
!!! TCCTTGTTGCTTTTGTGTCC+AGG - chr4_2:56758244-56758263 Msa0609410:intron 45.0%
ACCTGGACACAAAAGCAACA+AGG + chr4_2:56758248-56758267 None:intergenic 45.0%
TCCGAATGGTGACACAGTTA+AGG - chr4_2:56758373-56758392 Msa0609410:intron 45.0%
CCCTTAACTGTGTCACCATT+CGG + chr4_2:56758377-56758396 None:intergenic 45.0%
CCGAATGGTGACACAGTTAA+GGG - chr4_2:56758374-56758393 Msa0609410:intron 45.0%
CGAATGGTGACACAGTTAAG+GGG - chr4_2:56758375-56758394 Msa0609410:intron 45.0%
! CTTTTCTTGAAGACCCGAGT+TGG + chr4_2:56758424-56758443 None:intergenic 45.0%
AACTTCGTGACGAGAAACAG+AGG - chr4_2:56758643-56758662 Msa0609410:intron 45.0%
CAAGGCAGAGAAAGAGAAGT+TGG - chr4_2:56758668-56758687 Msa0609410:intron 45.0%
!! GGGTACCAATTTGTTGCCAT+GGG + chr4_2:56758781-56758800 None:intergenic 45.0%
!! AGGGTACCAATTTGTTGCCA+TGG + chr4_2:56758782-56758801 None:intergenic 45.0%
GTTATCCAGGAGTTGCAATG+TGG - chr4_2:56758808-56758827 Msa0609410:intron 45.0%
AATTGCCACATTGCAACTCC+TGG + chr4_2:56758816-56758835 None:intergenic 45.0%
ACGAAGTACATGATCCTGTG+AGG + chr4_2:56758862-56758881 None:intergenic 45.0%
!! CTGGCTCTGTGCAATTCTTT+GGG - chr4_2:56758898-56758917 Msa0609410:CDS 45.0%
TGTATTCTAACTGGACCCAG+TGG - chr4_2:56758978-56758997 Msa0609410:CDS 45.0%
CAAATACAAACGGAAGCCAC+TGG + chr4_2:56758997-56759016 None:intergenic 45.0%
CAGTGGCTTCCGTTTGTATT+TGG - chr4_2:56758995-56759014 Msa0609410:exon 45.0%
! TTCGGTTCGTGTGAGTACAA+GGG + chr4_2:56759233-56759252 None:intergenic 45.0%
! ATTCGGTTCGTGTGAGTACA+AGG + chr4_2:56759234-56759253 None:intergenic 45.0%
CAGATATGTACCGAGATGTG+TGG - chr4_2:56759255-56759274 Msa0609410:five_prime_UTR 45.0%
GATATTAAACCTCCACGCTC+TGG - chr4_2:56759321-56759340 Msa0609410:five_prime_UTR 45.0%
TTTGGATCGATGTTGCACCA+AGG - chr4_2:56759418-56759437 Msa0609410:five_prime_UTR 45.0%
TTGGATCGATGTTGCACCAA+GGG - chr4_2:56759419-56759438 Msa0609410:five_prime_UTR 45.0%
!! TAATTAATTAATGTATAAAA+TGG + chr4_2:56755983-56756002 None:intergenic 5.0%
GCACTATAAAGTTGGGGGGT+TGG - chr4_2:56755778-56755797 Msa0609410:three_prime_UTR 50.0%
!! ACTGTTTCGGTGGCCTTGTT+TGG + chr4_2:56755829-56755848 None:intergenic 50.0%
GGGGGAATCTGTGTTTGTGT+GGG + chr4_2:56755929-56755948 None:intergenic 50.0%
TGGGGGAATCTGTGTTTGTG+TGG + chr4_2:56755930-56755949 None:intergenic 50.0%
AGGGTACGAAATGGTTTCCC+GGG - chr4_2:56756194-56756213 Msa0609410:three_prime_UTR 50.0%
AGCGAAGGTTGAATCGGGAA+CGG + chr4_2:56756265-56756284 None:intergenic 50.0%
GGAAGAGCGAAGGTTGAATC+GGG + chr4_2:56756270-56756289 None:intergenic 50.0%
TTGGAAGCAAGGTTGAAGGG+GGG + chr4_2:56756321-56756340 None:intergenic 50.0%
CAGACCTGACATTGGAAGCA+AGG + chr4_2:56756332-56756351 None:intergenic 50.0%
TAATTATGAAAGGGGGGGGG+GGG + chr4_2:56756385-56756404 None:intergenic 50.0%
CTAATTATGAAAGGGGGGGG+GGG + chr4_2:56756386-56756405 None:intergenic 50.0%
CCTAATTATGAAAGGGGGGG+GGG + chr4_2:56756387-56756406 None:intergenic 50.0%
CCCTAATTATGAAAGGGGGG+GGG + chr4_2:56756388-56756407 None:intergenic 50.0%
CCCCCCCCCTTTCATAATTA+GGG - chr4_2:56756385-56756404 Msa0609410:CDS 50.0%
CGAGTCCATGAGACAAATCG+AGG + chr4_2:56756729-56756748 None:intergenic 50.0%
TCTCATGGACTCGTGCTAGA+TGG - chr4_2:56756736-56756755 Msa0609410:intron 50.0%
AGAATGTTGAGGTGGATGGG+TGG - chr4_2:56756848-56756867 Msa0609410:CDS 50.0%
ATTGGGGAACATGCTACAGC+TGG + chr4_2:56757176-56757195 None:intergenic 50.0%
CAACTTCTCCCGACATGCTT+TGG + chr4_2:56758160-56758179 None:intergenic 50.0%
AAGGAAAGAGAGAGACGGGA+AGG + chr4_2:56758229-56758248 None:intergenic 50.0%
AAGGCCTGCCAAAACAGACA+AGG - chr4_2:56758329-56758348 Msa0609410:intron 50.0%
!! GATGGCAGCCTTGTCTGTTT+TGG + chr4_2:56758340-56758359 None:intergenic 50.0%
TCGGACAGCATCAATCAGGA+TGG + chr4_2:56758358-56758377 None:intergenic 50.0%
CCATTCGGACAGCATCAATC+AGG + chr4_2:56758362-56758381 None:intergenic 50.0%
CCTGATTGATGCTGTCCGAA+TGG - chr4_2:56758359-56758378 Msa0609410:intron 50.0%
TGACGAGAAACAGAGGCTCA+AGG - chr4_2:56758650-56758669 Msa0609410:intron 50.0%
!! CCAATTTGTTGCCATGGGCT+TGG + chr4_2:56758776-56758795 None:intergenic 50.0%
CCAAGCCCATGGCAACAAAT+TGG - chr4_2:56758773-56758792 Msa0609410:intron 50.0%
ATTTATGCCACCTGCTGCAG+TGG - chr4_2:56758833-56758852 Msa0609410:intron 50.0%
GAATTGCACAGAGCCAGCTT+AGG + chr4_2:56758895-56758914 None:intergenic 50.0%
!! GCTGGCTCTGTGCAATTCTT+TGG - chr4_2:56758897-56758916 Msa0609410:CDS 50.0%
GTGCTTGGGTCACTATTGTG+AGG - chr4_2:56759359-56759378 Msa0609410:five_prime_UTR 50.0%
TCGTACCCTAGCTACCTTCC+CGG + chr4_2:56756183-56756202 None:intergenic 55.0%
GCGAAGGTTGAATCGGGAAC+GGG + chr4_2:56756264-56756283 None:intergenic 55.0%
TTCCTTCCTCTGCCTTCACC+TGG - chr4_2:56756286-56756305 Msa0609410:three_prime_UTR 55.0%
AATTATGAAAGGGGGGGGGG+GGG + chr4_2:56756384-56756403 None:intergenic 55.0%
CCCCCCCCCCTTTCATAATT+AGG - chr4_2:56756384-56756403 Msa0609410:CDS 55.0%
GAGAGACGGGAAGGTAGACA+AGG + chr4_2:56758220-56758239 None:intergenic 55.0%
!!! TCTGTTTTGGCAGGCCTTCC+AGG + chr4_2:56758327-56758346 None:intergenic 55.0%
!!! GCAGCCTTGTCTGTTTTGGC+AGG + chr4_2:56758336-56758355 None:intergenic 55.0%
GGGGTAGGCAAGAAACTAGG+TGG + chr4_2:56758720-56758739 None:intergenic 55.0%
GTGGGGGTAGGCAAGAAACT+AGG + chr4_2:56758723-56758742 None:intergenic 55.0%
CTTGTGCAGCAAATGCCGCA+GGG + chr4_2:56758752-56758771 None:intergenic 55.0%
! TGTGAGGTATCCACTGCAGC+AGG + chr4_2:56758846-56758865 None:intergenic 55.0%
TGCTGCAGTGGATACCTCAC+AGG - chr4_2:56758845-56758864 Msa0609410:intron 55.0%
ACAGAGCCAGCTTAGGCAAC+TGG + chr4_2:56758888-56758907 None:intergenic 55.0%
ACCACAGTGCTCATGGTGCT+TGG - chr4_2:56759344-56759363 Msa0609410:five_prime_UTR 55.0%
CCACAGTGCTCATGGTGCTT+GGG - chr4_2:56759345-56759364 Msa0609410:five_prime_UTR 55.0%
GGCAGAGGAAGGAAGAGCGA+AGG + chr4_2:56756280-56756299 None:intergenic 60.0%
AGGTTGAAGGGGGGCTGAGT+GGG + chr4_2:56756312-56756331 None:intergenic 60.0%
AAGGTTGAAGGGGGGCTGAG+TGG + chr4_2:56756313-56756332 None:intergenic 60.0%
ATTATGAAAGGGGGGGGGGG+GGG + chr4_2:56756383-56756402 None:intergenic 60.0%
CTAGGCTCCATCTTGGAGCC+TGG - chr4_2:56758306-56758325 Msa0609410:intron 60.0%
GCTCCATCTTGGAGCCTGGA+AGG - chr4_2:56758310-56758329 Msa0609410:intron 60.0%
AGGCCTTCCAGGCTCCAAGA+TGG + chr4_2:56758316-56758335 None:intergenic 60.0%
AGCAAATGCCGCAGGGAGTG+CGG + chr4_2:56758745-56758764 None:intergenic 60.0%
CCTTGTGCAGCAAATGCCGC+AGG + chr4_2:56758753-56758772 None:intergenic 60.0%
! CCTGCGGCATTTGCTGCACA+AGG - chr4_2:56758750-56758769 Msa0609410:intron 60.0%
! GAGGTATCCACTGCAGCAGG+TGG + chr4_2:56758843-56758862 None:intergenic 60.0%
CGTCCTCCAGTTGCCTAAGC+TGG - chr4_2:56758879-56758898 Msa0609410:CDS 60.0%
GAGCCAGCTTAGGCAACTGG+AGG + chr4_2:56758885-56758904 None:intergenic 60.0%
! GCTCTGGACCACAGTGCTCA+TGG - chr4_2:56759337-56759356 Msa0609410:five_prime_UTR 60.0%
! CCCAAGCACCATGAGCACTG+TGG + chr4_2:56759348-56759367 None:intergenic 60.0%
ACGCGCCGGGAAGGTAGCTA+GGG - chr4_2:56756175-56756194 Msa0609410:three_prime_UTR 65.0%
GGCCAGGTGAAGGCAGAGGA+AGG + chr4_2:56756291-56756310 None:intergenic 65.0%
AGTGGGCCAGGTGAAGGCAG+AGG + chr4_2:56756295-56756314 None:intergenic 65.0%
TTATGAAAGGGGGGGGGGGG+GGG + chr4_2:56756382-56756401 None:intergenic 65.0%
! AATGCCGCAGGGAGTGCGGT+GGG + chr4_2:56758741-56758760 None:intergenic 65.0%
! AAATGCCGCAGGGAGTGCGG+TGG + chr4_2:56758742-56758761 None:intergenic 65.0%
GCTGCACAAGGCCAAGCCCA+TGG - chr4_2:56758762-56758781 Msa0609410:intron 65.0%
CACTGTGGTCCAGAGCGTGG+AGG + chr4_2:56759333-56759352 None:intergenic 65.0%
! GAGCACTGTGGTCCAGAGCG+TGG + chr4_2:56759336-56759355 None:intergenic 65.0%
CGCGATTCGCTGTCACGCGC+CGG - chr4_2:56756161-56756180 Msa0609410:three_prime_UTR 70.0%
GCGATTCGCTGTCACGCGCC+GGG - chr4_2:56756162-56756181 Msa0609410:three_prime_UTR 70.0%
TTCGCTGTCACGCGCCGGGA+AGG - chr4_2:56756166-56756185 Msa0609410:three_prime_UTR 70.0%
CACGCGCCGGGAAGGTAGCT+AGG - chr4_2:56756174-56756193 Msa0609410:three_prime_UTR 70.0%
GGGCTGAGTGGGCCAGGTGA+AGG + chr4_2:56756301-56756320 None:intergenic 70.0%
TATGAAAGGGGGGGGGGGGG+GGG + chr4_2:56756381-56756400 None:intergenic 70.0%
TACCCCCACCGCACTCCCTG+CGG - chr4_2:56758734-56758753 Msa0609410:intron 70.0%
! ATGCCGCAGGGAGTGCGGTG+GGG + chr4_2:56758740-56758759 None:intergenic 70.0%
GAAGGGGGGCTGAGTGGGCC+AGG + chr4_2:56756307-56756326 None:intergenic 75.0%
ATGAAAGGGGGGGGGGGGGG+GGG + chr4_2:56756380-56756399 None:intergenic 75.0%
! GCAGGGAGTGCGGTGGGGGT+AGG + chr4_2:56758735-56758754 None:intergenic 75.0%
! TGCCGCAGGGAGTGCGGTGG+GGG + chr4_2:56758739-56758758 None:intergenic 75.0%
! TGAAAGGGGGGGGGGGGGGG+GGG + chr4_2:56756379-56756398 None:intergenic 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756377-56756396 None:intergenic 85.0%
! GAAAGGGGGGGGGGGGGGGG+GGG + chr4_2:56756378-56756397 None:intergenic 85.0%
! AAGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756376-56756395 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr4_2:56756375-56756394 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56755757 56759445 56755757 ID=Msa0609410;Name=Msa0609410
chr4_2 mRNA 56755757 56759445 56755757 ID=Msa0609410-mRNA-1;Parent=Msa0609410;Name=Msa0609410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=447|0.75|0.8|1|1|1|5|549|247
chr4_2 exon 56755757 56756572 56755757 ID=Msa0609410-mRNA-1:exon:14691;Parent=Msa0609410-mRNA-1
chr4_2 exon 56756744 56756936 56756744 ID=Msa0609410-mRNA-1:exon:14690;Parent=Msa0609410-mRNA-1
chr4_2 exon 56757000 56757077 56757000 ID=Msa0609410-mRNA-1:exon:14689;Parent=Msa0609410-mRNA-1
chr4_2 exon 56757751 56757813 56757751 ID=Msa0609410-mRNA-1:exon:14688;Parent=Msa0609410-mRNA-1
chr4_2 exon 56758856 56759445 56758856 ID=Msa0609410-mRNA-1:exon:14687;Parent=Msa0609410-mRNA-1
chr4_2 five_prime_UTR 56758999 56759445 56758999 ID=Msa0609410-mRNA-1:five_prime_utr;Parent=Msa0609410-mRNA-1
chr4_2 CDS 56758856 56758998 56758856 ID=Msa0609410-mRNA-1:cds;Parent=Msa0609410-mRNA-1
chr4_2 CDS 56757751 56757813 56757751 ID=Msa0609410-mRNA-1:cds;Parent=Msa0609410-mRNA-1
chr4_2 CDS 56757000 56757077 56757000 ID=Msa0609410-mRNA-1:cds;Parent=Msa0609410-mRNA-1
chr4_2 CDS 56756744 56756936 56756744 ID=Msa0609410-mRNA-1:cds;Parent=Msa0609410-mRNA-1
chr4_2 CDS 56756306 56756572 56756306 ID=Msa0609410-mRNA-1:cds;Parent=Msa0609410-mRNA-1
chr4_2 three_prime_UTR 56755757 56756305 56755757 ID=Msa0609410-mRNA-1:three_prime_utr;Parent=Msa0609410-mRNA-1
Gene Sequence

>Msa0609410

ATGGTTTCCCGGGAAAACACGAATTGGATTAACGATTACGGTTTCTATGATGATATTCCCGTTCCCGATTCAACCTTCGCTCTTCCTTCCTCTGCCTTCACCTGGCCCACTCAGCCCCCCTTCAACCTTGCTTCCAATGTCAGTGCTGAAATTGATGGCTCGTTAGGGGATTCTGACAGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAATCATGTGCTGCTACTAGCTCCAAAGCATGTCGGGAGAAGTTGCGTAGAGATAGACTTAACGACAAGTGTGTACCTAATATAATGAACATTGTTAGGTTTATTGAACTAGGCTCCATCTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCCATCCTGATTGATGCTGTCCGAATGGTGACACAGTTAAGGGGTGAAGCCCAAAAGTTGAAAGATGCCAACTCGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCAATGAATGCACCACCTAGTTTCTTGCCTACCCCCACCGCACTCCCTGCGGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAATTGGTACCCTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTACTTCGTCCTCCAGTTGCCTAA
Protein sequence

>Msa0609410

MVSRENTNWINDYGFYDDIPVPDSTFALPSSAFTWPTQPPFNLASNVSAEIDGSLGDSDSLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKCVPNIMNIVRFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA*