AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083280 MtrunA17_Chr1g0196541 96.170 731 28 0 40 770 1 731 0.0 1488
Msa0083280 MtrunA17_Chr2g0296781 66.094 699 229 3 40 732 1 697 0.0 948
Msa0083280 MtrunA17_Chr6g0477261 67.517 588 183 3 151 732 1 586 0.0 805
Msa0083280 MtrunA17_Chr5g0441581 42.320 612 331 8 31 630 23 624 9.90e-167 497
Msa0083280 MtrunA17_Chr2g0291581 36.219 566 342 8 36 596 71 622 2.72e-116 367
Msa0083280 MtrunA17_Chr1g0207551 34.201 576 353 8 33 597 31 591 4.90e-108 348
Msa0083280 MtrunA17_Chr1g0202341 34.321 574 352 11 35 596 50 610 5.55e-103 332
Msa0083280 MtrunA17_Chr3g0080351 33.223 602 351 6 35 615 75 646 6.53e-102 333
Msa0083280 MtrunA17_Chr2g0329031 31.614 601 382 10 25 615 3 584 3.56e-101 328
Msa0083280 MtrunA17_Chr5g0448761 33.904 584 366 12 33 603 57 633 9.02e-100 326
Msa0083280 MtrunA17_Chr2g0291591 31.791 497 322 3 35 529 63 544 5.23e-89 291
Msa0083280 MtrunA17_Chr5g0440451 30.268 598 371 14 35 608 42 617 1.21e-80 277
Msa0083280 MtrunA17_Chr5g0448511 33.494 415 268 5 193 606 1 408 2.00e-79 265
Msa0083280 MtrunA17_Chr3g0118611 34.848 396 248 5 201 595 115 501 2.89e-76 262
Msa0083280 MtrunA17_Chr8g0363841 29.153 590 395 11 32 607 10 590 2.25e-69 241
Msa0083280 MtrunA17_Chr2g0287061 30.175 570 333 17 35 592 182 698 5.80e-68 239
Msa0083280 MtrunA17_Chr2g0324011 27.210 577 385 12 33 592 7 565 8.55e-68 234
Msa0083280 MtrunA17_Chr6g0476441 63.235 204 67 3 535 732 1 202 4.02e-67 224
Msa0083280 MtrunA17_Chr2g0287651 25.758 660 462 11 10 654 51 697 1.27e-64 231
Msa0083280 MtrunA17_Chr1g0198761 28.174 575 377 13 39 592 50 609 1.03e-60 218
Msa0083280 MtrunA17_Chr1g0203721 25.618 566 398 8 39 592 66 620 7.56e-59 215
Msa0083280 MtrunA17_Chr6g0458391 25.620 605 403 15 3 592 190 762 9.36e-56 204
Msa0083280 MtrunA17_Chr3g0082121 27.826 575 373 17 33 592 40 587 4.16e-53 196
Msa0083280 MtrunA17_Chr1g0203051 26.582 553 367 14 42 576 85 616 5.74e-53 194
Msa0083280 MtrunA17_Chr2g0276841 25.301 581 386 14 36 592 70 626 7.46e-50 186
Msa0083280 MtrunA17_Chr2g0294841 23.179 755 486 23 36 736 45 759 8.27e-45 172
Msa0083280 MtrunA17_Chr5g0431001 27.021 433 278 12 36 441 61 482 2.99e-39 152
Msa0083280 MtrunA17_Chr2g0290391 24.570 582 392 14 36 592 51 610 3.83e-39 154
Msa0083280 MtrunA17_Chr1g0164591 33.333 231 151 3 195 423 79 308 2.36e-38 145
Msa0083280 MtrunA17_Chr7g0258861 28.269 283 196 4 33 308 7 289 4.43e-31 124
Msa0083280 MtrunA17_Chr6g0476431 56.977 86 37 0 40 125 1 86 2.85e-27 105
Msa0083280 MtrunA17_Chr2g0308841 24.454 229 166 4 367 594 4 226 1.10e-16 80.9
Msa0083280 MtrunA17_Chr1g0172041 35.354 99 63 1 507 605 1 98 2.29e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083280 AT4G15090.1 33.026 651 401 11 33 664 48 682 3.95e-113 362
Msa0083280 AT4G15090.5 33.026 651 401 11 33 664 48 682 3.95e-113 362
Msa0083280 AT4G15090.3 33.026 651 401 11 33 664 48 682 3.95e-113 362
Msa0083280 AT4G15090.2 33.026 651 401 11 33 664 48 682 3.95e-113 362
Msa0083280 AT4G15090.4 33.026 651 401 11 33 664 48 682 3.95e-113 362
Msa0083280 AT3G22170.2 31.981 616 362 8 10 598 36 621 9.57e-102 333
Msa0083280 AT3G22170.1 31.981 616 362 8 10 598 36 621 9.57e-102 333
Msa0083280 AT1G52520.1 33.391 581 364 12 26 596 72 639 1.58e-100 326
Msa0083280 AT4G38180.1 32.168 572 372 8 33 595 70 634 5.98e-98 321
Msa0083280 AT1G76320.3 32.292 576 352 12 40 602 1 551 1.50e-94 309
Msa0083280 AT1G76320.1 32.118 576 353 11 40 602 1 551 4.61e-94 310
Msa0083280 AT1G76320.4 32.118 576 353 11 40 602 1 551 4.61e-94 310
Msa0083280 AT1G76320.2 32.118 576 353 11 40 602 1 551 4.69e-94 309
Msa0083280 AT1G80010.1 32.988 579 365 11 36 599 95 665 9.68e-92 303
Msa0083280 AT4G19990.3 33.105 583 327 11 39 600 24 564 2.46e-89 297
Msa0083280 AT4G19990.4 33.105 583 327 11 39 600 24 564 2.46e-89 297
Msa0083280 AT4G19990.7 33.105 583 327 11 39 600 38 578 4.32e-89 297
Msa0083280 AT4G19990.6 33.105 583 327 11 39 600 24 564 4.46e-89 297
Msa0083280 AT4G19990.2 33.105 583 327 11 39 600 24 564 4.46e-89 297
Msa0083280 AT4G19990.5 33.105 583 327 11 39 600 24 564 4.81e-89 296
Msa0083280 AT2G32250.5 31.261 563 333 7 35 592 37 550 8.89e-89 296
Msa0083280 AT2G32250.2 31.261 563 333 7 35 592 37 550 2.48e-88 296
Msa0083280 AT2G32250.4 31.261 563 333 7 35 592 37 550 2.48e-88 296
Msa0083280 AT2G32250.6 31.261 563 333 7 35 592 37 550 2.95e-88 296
Msa0083280 AT2G32250.1 31.261 563 333 7 35 592 37 550 2.95e-88 296
Msa0083280 AT2G32250.3 31.261 563 333 7 35 592 37 550 2.95e-88 296
Msa0083280 AT2G32250.8 31.004 558 331 7 40 592 1 509 1.52e-86 290
Msa0083280 AT2G32250.7 31.004 558 331 7 40 592 1 509 1.53e-86 290
Msa0083280 AT4G19990.1 34.592 503 285 9 101 600 46 507 6.09e-85 284
Msa0083280 AT2G27110.2 30.626 591 366 17 35 615 48 604 8.09e-77 265
Msa0083280 AT2G27110.1 30.626 591 366 17 35 615 48 604 8.09e-77 265
Msa0083280 AT2G27110.3 32.068 474 296 10 150 615 4 459 1.02e-73 254
Msa0083280 AT5G18960.2 29.610 564 343 16 35 592 210 725 1.30e-69 244
Msa0083280 AT5G18960.1 29.610 564 343 16 35 592 210 725 1.30e-69 244
Msa0083280 AT3G06250.2 28.419 563 348 16 35 592 189 701 3.88e-67 237
Msa0083280 AT3G06250.1 28.419 563 348 16 35 592 189 701 3.88e-67 237
Msa0083280 AT3G06250.3 28.419 563 348 16 35 592 189 701 3.88e-67 237
Msa0083280 AT4G38170.1 30.808 396 262 5 206 599 18 403 5.85e-67 231
Msa0083280 AT1G10240.2 26.162 581 381 16 36 592 48 604 4.88e-50 187
Msa0083280 AT1G10240.1 26.162 581 381 16 36 592 48 604 4.88e-50 187
Msa0083280 AT5G28530.3 24.704 591 380 18 36 592 55 614 1.65e-40 159
Msa0083280 AT5G28530.2 24.704 591 380 18 36 592 55 614 1.65e-40 159
Msa0083280 AT5G28530.1 24.452 593 383 18 36 592 55 618 1.73e-39 156
Msa0083280 AT5G28530.5 23.196 582 337 20 36 592 55 551 6.63e-27 117
Msa0083280 AT5G28530.4 22.931 580 345 19 36 592 55 555 9.56e-26 113

Find 159 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATACAAAATTTATTT+TGG 0.073660 1_2:+62340718 Msa0083280:CDS
TGGCAATGGTAAATGCTTTC+TGG 0.145575 1_2:-62341481 None:intergenic
TACTTGAAATTCTTTAAATT+TGG 0.164119 1_2:-62341501 None:intergenic
GAGTATTTACCCAACATTTC+TGG 0.181169 1_2:-62341071 None:intergenic
AATTAAAGACGTGGTGTTTA+AGG 0.198475 1_2:+62341622 Msa0083280:CDS
TGTTGCTTATTTGAGTTTAA+AGG 0.212760 1_2:+62341683 Msa0083280:CDS
TCTAGATTTATCTACTTAAA+TGG 0.232469 1_2:-62342706 None:intergenic
TGTATGTGAAAGACACATTT+TGG 0.241766 1_2:+62341255 Msa0083280:CDS
ATTGCTTGTGTGAGTCATTT+TGG 0.243877 1_2:+62341443 Msa0083280:CDS
CATTCGTCTGAAGAAGAATT+AGG 0.251158 1_2:-62339841 None:intergenic
ATGATAATGAATGGTTAAAA+TGG 0.261144 1_2:+62341201 Msa0083280:CDS
TACGCTAATCGTGTAGGTTT+TGG 0.267234 1_2:+62340183 Msa0083280:CDS
AGAATTGCAACGTGTTAATA+TGG 0.267882 1_2:+62341838 Msa0083280:CDS
GTTCAGAACAGGAAATATTC+TGG 0.287164 1_2:-62342462 None:intergenic
AGTAGAAGCAACTTCATAAA+AGG 0.295990 1_2:-62341870 None:intergenic
CTAAATGTCATCCCAGTTCT+AGG 0.302654 1_2:-62340126 None:intergenic
GGTCTGAAGAAGAAGTTATT+AGG 0.310139 1_2:+62340148 Msa0083280:CDS
TAATACTAGCTTTGAAAGAT+TGG 0.313945 1_2:+62341547 Msa0083280:CDS
TTTATGATTTGAGGACAATA+TGG 0.324306 1_2:-62342439 None:intergenic
TCTGAGCAAAAGTGATTTCA+TGG 0.327773 1_2:+62341142 Msa0083280:CDS
AGGGCTGCATATGAATATTT+TGG 0.330794 1_2:+62340756 Msa0083280:CDS
TTCAATAACAATTCTTGAAA+TGG 0.335352 1_2:-62340382 None:intergenic
TGGTAAATGCTTTCTGGAAA+TGG 0.337237 1_2:-62341475 None:intergenic
CTAGAACTGGGATGACATTT+AGG 0.343463 1_2:+62340127 Msa0083280:CDS
CACCATCGATGACGAGCTTT+AGG 0.352465 1_2:-62341023 None:intergenic
AGGATGGTTGATCATTCTTA+TGG 0.354581 1_2:-62342587 None:intergenic
TTTAGATTGGATGAGAGTTC+GGG 0.356799 1_2:+62340441 Msa0083280:CDS
CAATGGATATGGATGATAAA+AGG 0.357213 1_2:+62340697 Msa0083280:CDS
AATGCTTGTGTAGCTTTAGA+TGG 0.358270 1_2:+62340351 Msa0083280:CDS
TCTTCGGTAATTATGCCATT+TGG 0.360910 1_2:-62340963 None:intergenic
CTTTGTGTGCTTAAGCTCAT+TGG 0.361479 1_2:+62341725 Msa0083280:CDS
TCATCAGTTTCTTGAAGAAT+AGG 0.369535 1_2:-62342299 None:intergenic
ATGGGCATCCTCTTTCAAAA+AGG 0.374223 1_2:+62342053 Msa0083280:CDS
TTAATCGTATTGAAACTTGT+AGG 0.381649 1_2:+62342758 Msa0083280:three_prime_UTR
TTTCATTGCTTTATCATCTT+CGG 0.384250 1_2:-62340979 None:intergenic
TAAGGTATGTTTCAATGAAA+AGG 0.385210 1_2:+62341640 Msa0083280:CDS
TGATGGTTCACTCCAACAAC+GGG 0.387452 1_2:-62340837 None:intergenic
AAGTGGTGACGAGACGGTTA+TGG 0.389504 1_2:-62339751 None:intergenic
ATTTGATGAGCGGCACCGTT+GGG 0.394490 1_2:+62341226 Msa0083280:CDS
GGGTGTGGGAATCTTACTTC+TGG 0.395908 1_2:+62340552 Msa0083280:CDS
GAAGATGAAGAACCTAGAAC+TGG 0.406519 1_2:+62340114 Msa0083280:CDS
CAACAGTAACTCTCAGTAAT+GGG 0.407618 1_2:+62342035 Msa0083280:CDS
TTGCCATTGGTCCCCGTTGT+TGG 0.408860 1_2:+62340825 Msa0083280:CDS
ATTAGGGCACAGAAACGATT+TGG 0.414520 1_2:-62339824 None:intergenic
GAACGCTACGGTGGTGGTTG+AGG 0.424743 1_2:-62339784 None:intergenic
ATTTACAGAAAGTGATGAAC+AGG 0.427795 1_2:+62341912 Msa0083280:CDS
ATACTTATTTGTTAAATAAG+TGG 0.431247 1_2:-62340799 None:intergenic
AACGGTGCGATTTGCAGAAA+TGG 0.432388 1_2:-62339711 None:intergenic
ACAATCCTAGTCACGTGGTT+TGG 0.434005 1_2:-62342007 None:intergenic
TTTACACTTATAATAGCATT+GGG 0.440864 1_2:+62342884 Msa0083280:three_prime_UTR
ATATTCTGGTTTATGATTTG+AGG 0.444118 1_2:-62342448 None:intergenic
ATTCGTCTGAAGAAGAATTA+GGG 0.449311 1_2:-62339840 None:intergenic
AGAGTGTTAAATGTAAAGAT+AGG 0.452463 1_2:-62342794 None:intergenic
ATTTACACTTATAATAGCAT+TGG 0.452863 1_2:+62342883 Msa0083280:three_prime_UTR
GACAACATTGAAGCGGTTTG+TGG 0.452916 1_2:+62341346 Msa0083280:CDS
TATTTGATGAGCGGCACCGT+TGG 0.456287 1_2:+62341225 Msa0083280:CDS
TTCTTCGAACGCTACGGTGG+TGG 0.460750 1_2:-62339790 None:intergenic
TACCTGTAAAAGTTCAGAAC+AGG 0.463097 1_2:-62342473 None:intergenic
GAAGAAGGTTCCAGAAATGT+TGG 0.468659 1_2:+62341061 Msa0083280:CDS
ATTTGCAGAAATGGTGAAGA+AGG 0.469711 1_2:-62339702 None:intergenic
TGGATGCTAAAACTCTTACT+TGG 0.470376 1_2:+62340901 Msa0083280:CDS
AGAAACGATTTGGCGGCAAA+AGG 0.481559 1_2:-62339814 None:intergenic
TTTGGGCAGATGCGAGATGT+AGG 0.483477 1_2:+62340736 Msa0083280:CDS
GGGCACGAAGTGCACGAATC+GGG 0.491204 1_2:+62339633 None:intergenic
GGTCTATGTCTTTACGAGGA+TGG 0.493066 1_2:-62342603 None:intergenic
TTAACCATTCATTATCATGT+AGG 0.496964 1_2:-62341196 None:intergenic
CAATCTAAAATACCGTCCTC+TGG 0.503024 1_2:-62340427 None:intergenic
CCAACAGTAACTCTCAGTAA+TGG 0.503577 1_2:+62342034 Msa0083280:CDS
AGTATGTTCTTGTGTAATCC+TGG 0.507755 1_2:-62341978 None:intergenic
GGTGTTGAGATGAATGGGTG+TGG 0.508197 1_2:+62340537 Msa0083280:CDS
TACTAGCTTTGAAAGATTGG+AGG 0.508243 1_2:+62341550 Msa0083280:CDS
ACATAGACCAACCACTACTC+TGG 0.508434 1_2:+62342617 Msa0083280:three_prime_UTR
AAGAAGGTTCCAGAAATGTT+GGG 0.510364 1_2:+62341062 Msa0083280:CDS
CAACTCCAAACCACGTGACT+AGG 0.513724 1_2:+62342002 Msa0083280:CDS
GAGGTAAGATATTGCTTCGA+AGG 0.514633 1_2:-62340303 None:intergenic
ATGATGGTTCACTCCAACAA+CGG 0.516650 1_2:-62340838 None:intergenic
CTGTGGGTGTTGAGATGAAT+GGG 0.521887 1_2:+62340532 Msa0083280:CDS
AAGTGATTTCATGGAGAGGT+GGG 0.523064 1_2:+62341151 Msa0083280:CDS
AAAGTAAGACGGTTAAGACT+TGG 0.524410 1_2:+62340603 Msa0083280:CDS
ATTGAATGATAAAATCGAAA+AGG 0.526317 1_2:+62341385 Msa0083280:CDS
GATCAAGGTGGGATTAATGT+TGG 0.526517 1_2:+62340495 Msa0083280:CDS
AAATTCTTTAAATTTGGCAA+TGG 0.528148 1_2:-62341495 None:intergenic
ATTGAACATAATCATGAACT+TGG 0.529122 1_2:+62340399 Msa0083280:CDS
TTACTTGGTTGTTCACAAGA+TGG 0.537284 1_2:+62340916 Msa0083280:CDS
TTCCTAAAGCTCGTCATCGA+TGG 0.537412 1_2:+62341021 Msa0083280:CDS
TTGGGCAGATGCGAGATGTA+GGG 0.538615 1_2:+62340737 Msa0083280:CDS
ATAACCTACATGATAATGAA+TGG 0.540605 1_2:+62341192 Msa0083280:CDS
ATTTAAAGAATTTCAAGTAG+AGG 0.542601 1_2:+62341505 Msa0083280:CDS
AATTCAGAACTTAATGATCA+AGG 0.544624 1_2:+62340480 Msa0083280:CDS
CTTGTGGCATATAATGAAGA+AGG 0.550485 1_2:+62341046 Msa0083280:CDS
ATTACAGCAATGTAAATACA+AGG 0.553033 1_2:+62342820 Msa0083280:three_prime_UTR
ATAAAATAGTCTGACCATGA+TGG 0.558886 1_2:-62340854 None:intergenic
AAAGTGATTTCATGGAGAGG+TGG 0.559223 1_2:+62341150 Msa0083280:CDS
CTTCTAAAGAGCCATCCTCC+AGG 0.560777 1_2:+62341960 Msa0083280:CDS
AAGTAAGACGGTTAAGACTT+GGG 0.560843 1_2:+62340604 Msa0083280:CDS
GAAAGTGATGAACAGGATCA+AGG 0.562243 1_2:+62341919 Msa0083280:CDS
TCTGTGGGTGTTGAGATGAA+TGG 0.568290 1_2:+62340531 Msa0083280:CDS
TACCTCGAAAACACAGTGTA+GGG 0.568827 1_2:+62340320 Msa0083280:CDS
TTACCTCGAAAACACAGTGT+AGG 0.570982 1_2:+62340319 Msa0083280:CDS
ATGAATTACGCTAATCGTGT+AGG 0.573095 1_2:+62340177 Msa0083280:CDS
GTGTTGAGATGAATGGGTGT+GGG 0.575538 1_2:+62340538 Msa0083280:CDS
ATGCATGGACATGCTCCAAA+TGG 0.577612 1_2:+62340948 Msa0083280:CDS
ACTCCAACAACGGGGACCAA+TGG 0.579058 1_2:-62340828 None:intergenic
TAAAATGGTTATTTGATGAG+CGG 0.580254 1_2:+62341216 Msa0083280:CDS
GTTGTTGGAGTGAACCATCA+TGG 0.580693 1_2:+62340840 Msa0083280:CDS
AAATAAGTATGACTTGCCAT+TGG 0.582213 1_2:+62340812 Msa0083280:CDS
ACTCAAAGACAACATTGAAG+CGG 0.582318 1_2:+62341339 Msa0083280:CDS
AAACGATCAAAGTCAAGAAG+AGG 0.583429 1_2:+62342153 Msa0083280:CDS
CAGAACTTAATGATCAAGGT+GGG 0.583962 1_2:+62340484 Msa0083280:CDS
TTTGCAGAAATGGTGAAGAA+GGG 0.584959 1_2:-62339701 None:intergenic
CCATTACTGAGAGTTACTGT+TGG 0.587222 1_2:-62342034 None:intergenic
GAATTGCGAAGCGATGAAAA+CGG 0.590798 1_2:-62339729 None:intergenic
AGATATACATTGATGAAACA+TGG 0.592243 1_2:+62341809 Msa0083280:CDS
AAAGGATTCTTCGAACGCTA+CGG 0.596633 1_2:-62339796 None:intergenic
CTCGTCATCGATGGTGCTTG+TGG 0.597557 1_2:+62341030 Msa0083280:CDS
ACATCTTAGTGATGTAAACC+AGG 0.599828 1_2:+62342328 Msa0083280:CDS
AGGGCACAGAAACGATTTGG+CGG 0.600266 1_2:-62339821 None:intergenic
TAGCATGTAATTGTGCAAGA+AGG 0.600918 1_2:+62340259 Msa0083280:CDS
GGTAGAAATCTTCAATCTGT+GGG 0.601916 1_2:+62340516 Msa0083280:CDS
TAAAATCGAAAAGGAAAGCA+TGG 0.602750 1_2:+62341394 Msa0083280:CDS
AGACGGTTAAGACTTGGGAG+AGG 0.603546 1_2:+62340609 Msa0083280:CDS
AACCACCATGTCCAGAGTAG+TGG 0.606476 1_2:-62342628 None:intergenic
AATGTGTCTTTCACATACAC+AGG 0.609838 1_2:-62341251 None:intergenic
CGAAAACACAGTGTAGGGCT+AGG 0.611004 1_2:+62340325 Msa0083280:CDS
GTAGAGAACGTGGGTTCGTG+AGG 0.615132 1_2:-62339666 None:intergenic
TCTTGTGTAATCCTGGAGGA+TGG 0.617853 1_2:-62341971 None:intergenic
GGATTCTTCGAACGCTACGG+TGG 0.623262 1_2:-62339793 None:intergenic
ATAGCTGCTGTTAAACAAAG+TGG 0.623526 1_2:+62342651 Msa0083280:three_prime_UTR
ACCAACCACTACTCTGGACA+TGG 0.633901 1_2:+62342623 Msa0083280:three_prime_UTR
AGATGGTTAGAATGTATGCA+TGG 0.634404 1_2:+62340933 Msa0083280:CDS
TGGTAGAAATCTTCAATCTG+TGG 0.643326 1_2:+62340515 Msa0083280:CDS
GTTCGGGGACTCATGTAGAG+AGG 0.649720 1_2:+62340457 Msa0083280:CDS
AACTTGGTCAAACCAGAGGA+CGG 0.650612 1_2:+62340415 Msa0083280:CDS
ACCATGTCCAGAGTAGTGGT+TGG 0.651376 1_2:-62342624 None:intergenic
AAGATGAAGAACCTAGAACT+GGG 0.654596 1_2:+62340115 Msa0083280:CDS
AGTGATTTCATGGAGAGGTG+GGG 0.655787 1_2:+62341152 Msa0083280:CDS
CAAAACTCCAAAGAACAGCA+AGG 0.655801 1_2:+62342123 Msa0083280:CDS
ATTCTGTGCAGAAAGTAAGA+CGG 0.658712 1_2:+62340592 Msa0083280:CDS
GGTTGGTCTATGTCTTTACG+AGG 0.660233 1_2:-62342607 None:intergenic
TCAGAACTTAATGATCAAGG+TGG 0.664170 1_2:+62340483 Msa0083280:CDS
TGGCTCTTTAGAAGATAACA+CGG 0.664729 1_2:-62341951 None:intergenic
CGTAGAAGAGTAGAGAACGT+GGG 0.666218 1_2:-62339675 None:intergenic
AACCACTACTCTGGACATGG+TGG 0.671470 1_2:+62342626 Msa0083280:three_prime_UTR
TTACAGCAATGTAAATACAA+GGG 0.672978 1_2:+62342821 Msa0083280:three_prime_UTR
TTAGATTGGATGAGAGTTCG+GGG 0.678804 1_2:+62340442 Msa0083280:CDS
TCACATACACAGGAACCCAA+CGG 0.679348 1_2:-62341241 None:intergenic
TCGATGACGAGCTTTAGGAA+AGG 0.682769 1_2:-62341018 None:intergenic
AAAAGAGAAAATTAAAGACG+TGG 0.683650 1_2:+62341613 Msa0083280:CDS
GCAAAAGTGATTTCATGGAG+AGG 0.684724 1_2:+62341147 Msa0083280:CDS
GTGTGCAATATTGTCGAACG+TGG 0.685729 1_2:+62340881 Msa0083280:CDS
CTGGAATGTCGACTGCACAA+CGG 0.692769 1_2:+62341279 Msa0083280:CDS
CATGAACTTGGTCAAACCAG+AGG 0.694396 1_2:+62340411 Msa0083280:CDS
GGTGGAGGAAGTATGTAAAG+CGG 0.705310 1_2:+62341786 Msa0083280:CDS
GATCAACAATCCTAGTCACG+TGG 0.707154 1_2:-62342012 None:intergenic
TTTACATACTTCCTCCACCG+TGG 0.708646 1_2:-62341782 None:intergenic
TCGTAGAAGAGTAGAGAACG+TGG 0.712398 1_2:-62339676 None:intergenic
AATCGAAAAGGAAAGCATGG+CGG 0.726163 1_2:+62341397 Msa0083280:CDS
ATGTTCTTGTGTAATCCTGG+AGG 0.762199 1_2:-62341975 None:intergenic
GATGGTTCACTCCAACAACG+GGG 0.773003 1_2:-62340836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTATTGTATTTAG+TGG + chr1_2:62340002-62340021 Msa0083280:intron 10.0%
!!! GAATATACAAAATTTATTTT+GGG + chr1_2:62340719-62340738 Msa0083280:CDS 10.0%
!!! GGAATATACAAAATTTATTT+TGG + chr1_2:62340718-62340737 Msa0083280:CDS 15.0%
!!! ATACTTATTTGTTAAATAAG+TGG - chr1_2:62340802-62340821 None:intergenic 15.0%
!! TACTTGAAATTCTTTAAATT+TGG - chr1_2:62341504-62341523 None:intergenic 15.0%
!! AAATAGAGAAAATAAATTTG+TGG - chr1_2:62342191-62342210 None:intergenic 15.0%
!!! ATAAATAAATGTCTGATTTT+AGG + chr1_2:62342248-62342267 Msa0083280:intron 15.0%
!!! ATTTATTTGATTATTTCTTG+TGG + chr1_2:62342495-62342514 Msa0083280:intron 15.0%
!! TTCAATAACAATTCTTGAAA+TGG - chr1_2:62340385-62340404 None:intergenic 20.0%
!!! ATGATAATGAATGGTTAAAA+TGG + chr1_2:62341201-62341220 Msa0083280:CDS 20.0%
!! ATTGAATGATAAAATCGAAA+AGG + chr1_2:62341385-62341404 Msa0083280:CDS 20.0%
!! AAATTCTTTAAATTTGGCAA+TGG - chr1_2:62341498-62341517 None:intergenic 20.0%
!!! ATTTAAAGAATTTCAAGTAG+AGG + chr1_2:62341505-62341524 Msa0083280:CDS 20.0%
!! TTATTTGAACATTTACATTG+TGG + chr1_2:62342384-62342403 Msa0083280:intron 20.0%
!! TCTAGATTTATCTACTTAAA+TGG - chr1_2:62342709-62342728 None:intergenic 20.0%
!! ATTTACACTTATAATAGCAT+TGG + chr1_2:62342883-62342902 Msa0083280:three_prime_UTR 20.0%
!! TTTACACTTATAATAGCATT+GGG + chr1_2:62342884-62342903 Msa0083280:three_prime_UTR 20.0%
!! TTTTGTCTCTTATGATATGA+AGG - chr1_2:62339910-62339929 None:intergenic 25.0%
! ATTGAACATAATCATGAACT+TGG + chr1_2:62340399-62340418 Msa0083280:CDS 25.0%
! AATTCAGAACTTAATGATCA+AGG + chr1_2:62340480-62340499 Msa0083280:CDS 25.0%
!! TAGTCAATTTTATTGTGCAA+TGG + chr1_2:62340680-62340699 Msa0083280:CDS 25.0%
!! ATTTTATTGTGCAATGGATA+TGG + chr1_2:62340686-62340705 Msa0083280:CDS 25.0%
! TTTCATTGCTTTATCATCTT+CGG - chr1_2:62340982-62341001 None:intergenic 25.0%
!! ATAACCTACATGATAATGAA+TGG + chr1_2:62341192-62341211 Msa0083280:CDS 25.0%
! TTAACCATTCATTATCATGT+AGG - chr1_2:62341199-62341218 None:intergenic 25.0%
! TAAAATGGTTATTTGATGAG+CGG + chr1_2:62341216-62341235 Msa0083280:CDS 25.0%
!!! AGTATAGACTCATTTTTTGA+TGG + chr1_2:62341308-62341327 Msa0083280:CDS 25.0%
!!! GTATAGACTCATTTTTTGAT+GGG + chr1_2:62341309-62341328 Msa0083280:CDS 25.0%
!!! TAATACTAGCTTTGAAAGAT+TGG + chr1_2:62341547-62341566 Msa0083280:CDS 25.0%
! AAAAGAGAAAATTAAAGACG+TGG + chr1_2:62341613-62341632 Msa0083280:CDS 25.0%
! TAAGGTATGTTTCAATGAAA+AGG + chr1_2:62341640-62341659 Msa0083280:CDS 25.0%
!! TGTTGCTTATTTGAGTTTAA+AGG + chr1_2:62341683-62341702 Msa0083280:CDS 25.0%
! AGATATACATTGATGAAACA+TGG + chr1_2:62341809-62341828 Msa0083280:CDS 25.0%
!!! GTCTGATTTTAGGTTTTTTA+TGG + chr1_2:62342258-62342277 Msa0083280:intron 25.0%
!!! ATTTTAGGTTTTTTATGGCA+GGG + chr1_2:62342263-62342282 Msa0083280:intron 25.0%
!!! AAATAAAAATAAAGAGCACC+AGG - chr1_2:62342370-62342389 None:intergenic 25.0%
! TTTATGATTTGAGGACAATA+TGG - chr1_2:62342442-62342461 None:intergenic 25.0%
!!! ATATTCTGGTTTATGATTTG+AGG - chr1_2:62342451-62342470 None:intergenic 25.0%
! TTAATCGTATTGAAACTTGT+AGG + chr1_2:62342758-62342777 Msa0083280:three_prime_UTR 25.0%
!! AGAGTGTTAAATGTAAAGAT+AGG - chr1_2:62342797-62342816 None:intergenic 25.0%
! ATTACAGCAATGTAAATACA+AGG + chr1_2:62342820-62342839 Msa0083280:three_prime_UTR 25.0%
! TTACAGCAATGTAAATACAA+GGG + chr1_2:62342821-62342840 Msa0083280:three_prime_UTR 25.0%
ATTCGTCTGAAGAAGAATTA+GGG - chr1_2:62339843-62339862 None:intergenic 30.0%
AGTTCAAAAAATGCAGATGA+TGG + chr1_2:62340219-62340238 Msa0083280:CDS 30.0%
! TTTTAGATTGGATGAGAGTT+CGG + chr1_2:62340440-62340459 Msa0083280:CDS 30.0%
CAATGGATATGGATGATAAA+AGG + chr1_2:62340697-62340716 Msa0083280:CDS 30.0%
! TTTTGGTGAAGTCATAACTT+TGG + chr1_2:62340773-62340792 Msa0083280:CDS 30.0%
! AAATAAGTATGACTTGCCAT+TGG + chr1_2:62340812-62340831 Msa0083280:CDS 30.0%
ATAAAATAGTCTGACCATGA+TGG - chr1_2:62340857-62340876 None:intergenic 30.0%
! TCATGGTCAGACTATTTTAT+TGG + chr1_2:62340857-62340876 Msa0083280:CDS 30.0%
! CATGGTCAGACTATTTTATT+GGG + chr1_2:62340858-62340877 Msa0083280:CDS 30.0%
! ATGGTCAGACTATTTTATTG+GGG + chr1_2:62340859-62340878 Msa0083280:CDS 30.0%
AGCAATGAAAAATGCAATTG+AGG + chr1_2:62340992-62341011 Msa0083280:CDS 30.0%
! TGTATGTGAAAGACACATTT+TGG + chr1_2:62341255-62341274 Msa0083280:CDS 30.0%
! GTATGTGAAAGACACATTTT+GGG + chr1_2:62341256-62341275 Msa0083280:CDS 30.0%
TAAAATCGAAAAGGAAAGCA+TGG + chr1_2:62341394-62341413 Msa0083280:CDS 30.0%
AATTAAAGACGTGGTGTTTA+AGG + chr1_2:62341622-62341641 Msa0083280:CDS 30.0%
CGTGGCAAAATATAAAAAGA+CGG - chr1_2:62341767-62341786 None:intergenic 30.0%
! CGTCTTTTTATATTTTGCCA+CGG + chr1_2:62341765-62341784 Msa0083280:CDS 30.0%
AGAATTGCAACGTGTTAATA+TGG + chr1_2:62341838-62341857 Msa0083280:CDS 30.0%
AGTAGAAGCAACTTCATAAA+AGG - chr1_2:62341873-62341892 None:intergenic 30.0%
ATTTACAGAAAGTGATGAAC+AGG + chr1_2:62341912-62341931 Msa0083280:CDS 30.0%
!!! TTATTTTCCTTGCTGTTCTT+TGG - chr1_2:62342133-62342152 None:intergenic 30.0%
!!! GATTTTAGGTTTTTTATGGC+AGG + chr1_2:62342262-62342281 Msa0083280:intron 30.0%
TCATCAGTTTCTTGAAGAAT+AGG - chr1_2:62342302-62342321 None:intergenic 30.0%
TGATAAAACATCTGTTTCGT+AGG + chr1_2:62342414-62342433 Msa0083280:intron 30.0%
! GATTATTTCTTGTGGTAACA+TGG + chr1_2:62342503-62342522 Msa0083280:intron 30.0%
TTTGCAGAAATGGTGAAGAA+GGG - chr1_2:62339704-62339723 None:intergenic 35.0%
ATTTGCAGAAATGGTGAAGA+AGG - chr1_2:62339705-62339724 None:intergenic 35.0%
CATTCGTCTGAAGAAGAATT+AGG - chr1_2:62339844-62339863 None:intergenic 35.0%
AAGATGAAGAACCTAGAACT+GGG + chr1_2:62340115-62340134 Msa0083280:CDS 35.0%
GGTCTGAAGAAGAAGTTATT+AGG + chr1_2:62340148-62340167 Msa0083280:CDS 35.0%
ATGAATTACGCTAATCGTGT+AGG + chr1_2:62340177-62340196 Msa0083280:CDS 35.0%
TAGCATGTAATTGTGCAAGA+AGG + chr1_2:62340259-62340278 Msa0083280:CDS 35.0%
!! AATGCTTGTGTAGCTTTAGA+TGG + chr1_2:62340351-62340370 Msa0083280:CDS 35.0%
TTTAGATTGGATGAGAGTTC+GGG + chr1_2:62340441-62340460 Msa0083280:CDS 35.0%
TCAGAACTTAATGATCAAGG+TGG + chr1_2:62340483-62340502 Msa0083280:CDS 35.0%
CAGAACTTAATGATCAAGGT+GGG + chr1_2:62340484-62340503 Msa0083280:CDS 35.0%
TGGTAGAAATCTTCAATCTG+TGG + chr1_2:62340515-62340534 Msa0083280:CDS 35.0%
GGTAGAAATCTTCAATCTGT+GGG + chr1_2:62340516-62340535 Msa0083280:CDS 35.0%
ATTCTGTGCAGAAAGTAAGA+CGG + chr1_2:62340592-62340611 Msa0083280:CDS 35.0%
AAAGTAAGACGGTTAAGACT+TGG + chr1_2:62340603-62340622 Msa0083280:CDS 35.0%
AAGTAAGACGGTTAAGACTT+GGG + chr1_2:62340604-62340623 Msa0083280:CDS 35.0%
! AGGGCTGCATATGAATATTT+TGG + chr1_2:62340756-62340775 Msa0083280:CDS 35.0%
TGGATGCTAAAACTCTTACT+TGG + chr1_2:62340901-62340920 Msa0083280:CDS 35.0%
TTACTTGGTTGTTCACAAGA+TGG + chr1_2:62340916-62340935 Msa0083280:CDS 35.0%
AGATGGTTAGAATGTATGCA+TGG + chr1_2:62340933-62340952 Msa0083280:CDS 35.0%
TCTTCGGTAATTATGCCATT+TGG - chr1_2:62340966-62340985 None:intergenic 35.0%
CTTGTGGCATATAATGAAGA+AGG + chr1_2:62341046-62341065 Msa0083280:CDS 35.0%
AAGAAGGTTCCAGAAATGTT+GGG + chr1_2:62341062-62341081 Msa0083280:CDS 35.0%
GAGTATTTACCCAACATTTC+TGG - chr1_2:62341074-62341093 None:intergenic 35.0%
! GTCTATCAAAACACTTTTGC+AGG + chr1_2:62341103-62341122 Msa0083280:CDS 35.0%
TCTGAGCAAAAGTGATTTCA+TGG + chr1_2:62341142-62341161 Msa0083280:CDS 35.0%
AATGTGTCTTTCACATACAC+AGG - chr1_2:62341254-62341273 None:intergenic 35.0%
ACTCAAAGACAACATTGAAG+CGG + chr1_2:62341339-62341358 Msa0083280:CDS 35.0%
! ATTGCTTGTGTGAGTCATTT+TGG + chr1_2:62341443-62341462 Msa0083280:CDS 35.0%
! TGGTAAATGCTTTCTGGAAA+TGG - chr1_2:62341478-62341497 None:intergenic 35.0%
!! TACTAGCTTTGAAAGATTGG+AGG + chr1_2:62341550-62341569 Msa0083280:CDS 35.0%
! CTTTTTATATTTTGCCACGG+TGG + chr1_2:62341768-62341787 Msa0083280:CDS 35.0%
! TGGCTCTTTAGAAGATAACA+CGG - chr1_2:62341954-62341973 None:intergenic 35.0%
AGTATGTTCTTGTGTAATCC+TGG - chr1_2:62341981-62342000 None:intergenic 35.0%
CAACAGTAACTCTCAGTAAT+GGG + chr1_2:62342035-62342054 Msa0083280:CDS 35.0%
!! GATGTCTTCCTTTTTGAAAG+AGG - chr1_2:62342064-62342083 None:intergenic 35.0%
AAACGATCAAAGTCAAGAAG+AGG + chr1_2:62342153-62342172 Msa0083280:CDS 35.0%
ACATCTTAGTGATGTAAACC+AGG + chr1_2:62342328-62342347 Msa0083280:CDS 35.0%
! GGTTCTATATTTTCATCACC+TGG - chr1_2:62342349-62342368 None:intergenic 35.0%
GGTGATGAAAATATAGAACC+TGG + chr1_2:62342349-62342368 Msa0083280:intron 35.0%
GTTCAGAACAGGAAATATTC+TGG - chr1_2:62342465-62342484 None:intergenic 35.0%
!! TTCCTGTTCTGAACTTTTAC+AGG + chr1_2:62342471-62342490 Msa0083280:CDS 35.0%
TACCTGTAAAAGTTCAGAAC+AGG - chr1_2:62342476-62342495 None:intergenic 35.0%
AGGATGGTTGATCATTCTTA+TGG - chr1_2:62342590-62342609 None:intergenic 35.0%
ATAGCTGCTGTTAAACAAAG+TGG + chr1_2:62342651-62342670 Msa0083280:three_prime_UTR 35.0%
GAATTGCGAAGCGATGAAAA+CGG - chr1_2:62339732-62339751 None:intergenic 40.0%
! AGAAAAAAGTGGTGACGAGA+CGG - chr1_2:62339760-62339779 None:intergenic 40.0%
GTTGAGGAAGCAGAAAAAAG+TGG - chr1_2:62339771-62339790 None:intergenic 40.0%
AAAGGATTCTTCGAACGCTA+CGG - chr1_2:62339799-62339818 None:intergenic 40.0%
ATTAGGGCACAGAAACGATT+TGG - chr1_2:62339827-62339846 None:intergenic 40.0%
GAAGATGAAGAACCTAGAAC+TGG + chr1_2:62340114-62340133 Msa0083280:CDS 40.0%
CTAAATGTCATCCCAGTTCT+AGG - chr1_2:62340129-62340148 None:intergenic 40.0%
CTAGAACTGGGATGACATTT+AGG + chr1_2:62340127-62340146 Msa0083280:CDS 40.0%
! TACGCTAATCGTGTAGGTTT+TGG + chr1_2:62340183-62340202 Msa0083280:CDS 40.0%
GAGGTAAGATATTGCTTCGA+AGG - chr1_2:62340306-62340325 None:intergenic 40.0%
TTACCTCGAAAACACAGTGT+AGG + chr1_2:62340319-62340338 Msa0083280:CDS 40.0%
TACCTCGAAAACACAGTGTA+GGG + chr1_2:62340320-62340339 Msa0083280:CDS 40.0%
! CAATCTAAAATACCGTCCTC+TGG - chr1_2:62340430-62340449 None:intergenic 40.0%
!! CAGAGGACGGTATTTTAGAT+TGG + chr1_2:62340428-62340447 Msa0083280:CDS 40.0%
TTAGATTGGATGAGAGTTCG+GGG + chr1_2:62340442-62340461 Msa0083280:CDS 40.0%
GATCAAGGTGGGATTAATGT+TGG + chr1_2:62340495-62340514 Msa0083280:CDS 40.0%
ATGATGGTTCACTCCAACAA+CGG - chr1_2:62340841-62340860 None:intergenic 40.0%
GAAGAAGGTTCCAGAAATGT+TGG + chr1_2:62341061-62341080 Msa0083280:CDS 40.0%
! CAAAACACTTTTGCAGGATG+TGG + chr1_2:62341109-62341128 Msa0083280:CDS 40.0%
GCAAAAGTGATTTCATGGAG+AGG + chr1_2:62341147-62341166 Msa0083280:CDS 40.0%
AAAGTGATTTCATGGAGAGG+TGG + chr1_2:62341150-62341169 Msa0083280:CDS 40.0%
AAGTGATTTCATGGAGAGGT+GGG + chr1_2:62341151-62341170 Msa0083280:CDS 40.0%
! AATCGAAAAGGAAAGCATGG+CGG + chr1_2:62341397-62341416 Msa0083280:CDS 40.0%
TGGCAATGGTAAATGCTTTC+TGG - chr1_2:62341484-62341503 None:intergenic 40.0%
CTTTGTGTGCTTAAGCTCAT+TGG + chr1_2:62341725-62341744 Msa0083280:CDS 40.0%
! TTTATATTTTGCCACGGTGG+AGG + chr1_2:62341771-62341790 Msa0083280:CDS 40.0%
GAAAGTGATGAACAGGATCA+AGG + chr1_2:62341919-62341938 Msa0083280:CDS 40.0%
ATGTTCTTGTGTAATCCTGG+AGG - chr1_2:62341978-62341997 None:intergenic 40.0%
CCATTACTGAGAGTTACTGT+TGG - chr1_2:62342037-62342056 None:intergenic 40.0%
CCAACAGTAACTCTCAGTAA+TGG + chr1_2:62342034-62342053 Msa0083280:CDS 40.0%
ATGGGCATCCTCTTTCAAAA+AGG + chr1_2:62342053-62342072 Msa0083280:CDS 40.0%
CAAAACTCCAAAGAACAGCA+AGG + chr1_2:62342123-62342142 Msa0083280:CDS 40.0%
TGCTCATGTGTTCTATTTGC+AGG + chr1_2:62342557-62342576 Msa0083280:intron 40.0%
! GTAAGCTAGAACTTTTGTGC+GGG - chr1_2:62342861-62342880 None:intergenic 40.0%
! CGTAAGCTAGAACTTTTGTG+CGG - chr1_2:62342862-62342881 None:intergenic 40.0%
CGTAGAAGAGTAGAGAACGT+GGG - chr1_2:62339678-62339697 None:intergenic 45.0%
TCGTAGAAGAGTAGAGAACG+TGG - chr1_2:62339679-62339698 None:intergenic 45.0%
AACGGTGCGATTTGCAGAAA+TGG - chr1_2:62339714-62339733 None:intergenic 45.0%
! AGAAACGATTTGGCGGCAAA+AGG - chr1_2:62339817-62339836 None:intergenic 45.0%
CATGAACTTGGTCAAACCAG+AGG + chr1_2:62340411-62340430 Msa0083280:CDS 45.0%
AACTTGGTCAAACCAGAGGA+CGG + chr1_2:62340415-62340434 Msa0083280:CDS 45.0%
!! TCTGTGGGTGTTGAGATGAA+TGG + chr1_2:62340531-62340550 Msa0083280:CDS 45.0%
!! CTGTGGGTGTTGAGATGAAT+GGG + chr1_2:62340532-62340551 Msa0083280:CDS 45.0%
GTGTTGAGATGAATGGGTGT+GGG + chr1_2:62340538-62340557 Msa0083280:CDS 45.0%
TGATGGTTCACTCCAACAAC+GGG - chr1_2:62340840-62340859 None:intergenic 45.0%
GTTGTTGGAGTGAACCATCA+TGG + chr1_2:62340840-62340859 Msa0083280:CDS 45.0%
GTGTGCAATATTGTCGAACG+TGG + chr1_2:62340881-62340900 Msa0083280:CDS 45.0%
ATGCATGGACATGCTCCAAA+TGG + chr1_2:62340948-62340967 Msa0083280:CDS 45.0%
!! TCGATGACGAGCTTTAGGAA+AGG - chr1_2:62341021-62341040 None:intergenic 45.0%
TTCCTAAAGCTCGTCATCGA+TGG + chr1_2:62341021-62341040 Msa0083280:CDS 45.0%
AGTGATTTCATGGAGAGGTG+GGG + chr1_2:62341152-62341171 Msa0083280:CDS 45.0%
TCACATACACAGGAACCCAA+CGG - chr1_2:62341244-62341263 None:intergenic 45.0%
! GTGAAAGACACATTTTGGGC+TGG + chr1_2:62341260-62341279 Msa0083280:CDS 45.0%
GACAACATTGAAGCGGTTTG+TGG + chr1_2:62341346-62341365 Msa0083280:CDS 45.0%
TTTACATACTTCCTCCACCG+TGG - chr1_2:62341785-62341804 None:intergenic 45.0%
! GGTGGAGGAAGTATGTAAAG+CGG + chr1_2:62341786-62341805 Msa0083280:CDS 45.0%
TCTTGTGTAATCCTGGAGGA+TGG - chr1_2:62341974-62341993 None:intergenic 45.0%
ACAATCCTAGTCACGTGGTT+TGG - chr1_2:62342010-62342029 None:intergenic 45.0%
GATCAACAATCCTAGTCACG+TGG - chr1_2:62342015-62342034 None:intergenic 45.0%
GGTCTATGTCTTTACGAGGA+TGG - chr1_2:62342606-62342625 None:intergenic 45.0%
!! GGTTGGTCTATGTCTTTACG+AGG - chr1_2:62342610-62342629 None:intergenic 45.0%
ACATAGACCAACCACTACTC+TGG + chr1_2:62342617-62342636 Msa0083280:three_prime_UTR 45.0%
! AAGTGGTGACGAGACGGTTA+TGG - chr1_2:62339754-62339773 None:intergenic 50.0%
! AGGGCACAGAAACGATTTGG+CGG - chr1_2:62339824-62339843 None:intergenic 50.0%
! AGCCCTACACTGTGTTTTCG+AGG - chr1_2:62340325-62340344 None:intergenic 50.0%
CGAAAACACAGTGTAGGGCT+AGG + chr1_2:62340325-62340344 Msa0083280:CDS 50.0%
! GGTGTTGAGATGAATGGGTG+TGG + chr1_2:62340537-62340556 Msa0083280:CDS 50.0%
GGGTGTGGGAATCTTACTTC+TGG + chr1_2:62340552-62340571 Msa0083280:CDS 50.0%
AGACGGTTAAGACTTGGGAG+AGG + chr1_2:62340609-62340628 Msa0083280:CDS 50.0%
TTTGGGCAGATGCGAGATGT+AGG + chr1_2:62340736-62340755 Msa0083280:CDS 50.0%
TTGGGCAGATGCGAGATGTA+GGG + chr1_2:62340737-62340756 Msa0083280:CDS 50.0%
GATGGTTCACTCCAACAACG+GGG - chr1_2:62340839-62340858 None:intergenic 50.0%
CACCATCGATGACGAGCTTT+AGG - chr1_2:62341026-62341045 None:intergenic 50.0%
TATTTGATGAGCGGCACCGT+TGG + chr1_2:62341225-62341244 Msa0083280:CDS 50.0%
ATTTGATGAGCGGCACCGTT+GGG + chr1_2:62341226-62341245 Msa0083280:CDS 50.0%
! CTGGAATGTCGACTGCACAA+CGG + chr1_2:62341279-62341298 Msa0083280:CDS 50.0%
! CTTCTAAAGAGCCATCCTCC+AGG + chr1_2:62341960-62341979 Msa0083280:CDS 50.0%
CAACTCCAAACCACGTGACT+AGG + chr1_2:62342002-62342021 Msa0083280:CDS 50.0%
ACCAACCACTACTCTGGACA+TGG + chr1_2:62342623-62342642 Msa0083280:three_prime_UTR 50.0%
ACCATGTCCAGAGTAGTGGT+TGG - chr1_2:62342627-62342646 None:intergenic 50.0%
AACCACTACTCTGGACATGG+TGG + chr1_2:62342626-62342645 Msa0083280:three_prime_UTR 50.0%
AACCACCATGTCCAGAGTAG+TGG - chr1_2:62342631-62342650 None:intergenic 50.0%
GTAGAGAACGTGGGTTCGTG+AGG - chr1_2:62339669-62339688 None:intergenic 55.0%
TTCTTCGAACGCTACGGTGG+TGG - chr1_2:62339793-62339812 None:intergenic 55.0%
GGATTCTTCGAACGCTACGG+TGG - chr1_2:62339796-62339815 None:intergenic 55.0%
GTTCGGGGACTCATGTAGAG+AGG + chr1_2:62340457-62340476 Msa0083280:CDS 55.0%
TTGCCATTGGTCCCCGTTGT+TGG + chr1_2:62340825-62340844 Msa0083280:CDS 55.0%
ACTCCAACAACGGGGACCAA+TGG - chr1_2:62340831-62340850 None:intergenic 55.0%
CTCGTCATCGATGGTGCTTG+TGG + chr1_2:62341030-62341049 Msa0083280:CDS 55.0%
! GAACGCTACGGTGGTGGTTG+AGG - chr1_2:62339787-62339806 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62339648 62342916 62339648 ID=Msa0083280;Name=Msa0083280
chr1_2 mRNA 62339648 62342916 62339648 ID=Msa0083280-mRNA-1;Parent=Msa0083280;Name=Msa0083280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=231|1|1|1|0.75|0.8|5|302|770
chr1_2 exon 62339648 62339879 62339648 ID=Msa0083280-mRNA-1:exon:20722;Parent=Msa0083280-mRNA-1
chr1_2 exon 62340022 62342174 62340022 ID=Msa0083280-mRNA-1:exon:20723;Parent=Msa0083280-mRNA-1
chr1_2 exon 62342284 62342349 62342284 ID=Msa0083280-mRNA-1:exon:20724;Parent=Msa0083280-mRNA-1
chr1_2 exon 62342436 62342492 62342436 ID=Msa0083280-mRNA-1:exon:20725;Parent=Msa0083280-mRNA-1
chr1_2 exon 62342579 62342916 62342579 ID=Msa0083280-mRNA-1:exon:20726;Parent=Msa0083280-mRNA-1
chr1_2 five_prime_UTR 62339648 62339878 62339648 ID=Msa0083280-mRNA-1:five_prime_utr;Parent=Msa0083280-mRNA-1
chr1_2 CDS 62339879 62339879 62339879 ID=Msa0083280-mRNA-1:cds;Parent=Msa0083280-mRNA-1
chr1_2 CDS 62340022 62342174 62340022 ID=Msa0083280-mRNA-1:cds;Parent=Msa0083280-mRNA-1
chr1_2 CDS 62342284 62342349 62342284 ID=Msa0083280-mRNA-1:cds;Parent=Msa0083280-mRNA-1
chr1_2 CDS 62342436 62342492 62342436 ID=Msa0083280-mRNA-1:cds;Parent=Msa0083280-mRNA-1
chr1_2 CDS 62342579 62342614 62342579 ID=Msa0083280-mRNA-1:cds;Parent=Msa0083280-mRNA-1
chr1_2 three_prime_UTR 62342615 62342916 62342615 ID=Msa0083280-mRNA-1:three_prime_utr;Parent=Msa0083280-mRNA-1
Gene Sequence

>Msa0083280

ATGGAAGAAATAGTTGCATCTTGTGATAAAGTTGAAAAAAGTGAAGCAAATAAAAGAAATGATGATAAATTTGCAGCTGCTATTGTTGTTAGTGAAGATGAAGAACCTAGAACTGGGATGACATTTAGGTCTGAAGAAGAAGTTATTAGGTATTACATGAATTACGCTAATCGTGTAGGTTTTGGAGTTACAAAAATAAGTTCAAAAAATGCAGATGATGGAAAGAAGTATTTTACTCTAGCATGTAATTGTGCAAGAAGGTATGTGAGTACTTCGAAGAATCCTTCGAAGCAATATCTTACCTCGAAAACACAGTGTAGGGCTAGGTTGAATGCTTGTGTAGCTTTAGATGGATCTAGTACCATTTCAAGAATTGTTATTGAACATAATCATGAACTTGGTCAAACCAGAGGACGGTATTTTAGATTGGATGAGAGTTCGGGGACTCATGTAGAGAGGAATTCAGAACTTAATGATCAAGGTGGGATTAATGTTGGTAGAAATCTTCAATCTGTGGGTGTTGAGATGAATGGGTGTGGGAATCTTACTTCTGGAGAAAATGATTGTAGAAATTCTGTGCAGAAAGTAAGACGGTTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTATTGTGCAATGGATATGGATGATAAAAGGAATATACAAAATTTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCATAACTTTGGACACCACTTATTTAACAAATAAGTATGACTTGCCATTGGTCCCCGTTGTTGGAGTGAACCATCATGGTCAGACTATTTTATTGGGGTGTGCAATATTGTCGAACGTGGATGCTAAAACTCTTACTTGGTTGTTCACAAGATGGTTAGAATGTATGCATGGACATGCTCCAAATGGCATAATTACCGAAGATGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCTAAAGCTCGTCATCGATGGTGCTTGTGGCATATAATGAAGAAGGTTCCAGAAATGTTGGGTAAATACTCTCGTAATGAGTCTATCAAAACACTTTTGCAGGATGTGGTATATGACTCTCTGAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAACCTACATGATAATGAATGGTTAAAATGGTTATTTGATGAGCGGCACCGTTGGGTTCCTGTGTATGTGAAAGACACATTTTGGGCTGGAATGTCGACTGCACAACGGAATGAAAGTATAGACTCATTTTTTGATGGGTATGTTAACTCAAAGACAACATTGAAGCGGTTTGTGGAACAGTATGACGATGCATTGAATGATAAAATCGAAAAGGAAAGCATGGCGGATTTTGATTCATTTAACTCAACAATTGCTTGTGTGAGTCATTTTGGCTTTGAAGTCCATTTCCAGAAAGCATTTACCATTGCCAAATTTAAAGAATTTCAAGTAGAGGTCTCTTCTATGATGTATTGTAATACTAGCTTTGAAAGATTGGAGGACTTGAATTCTATATTCTCTGTTACTGAAAATAAGAAAGTAAAAGAGAAAATTAAAGACGTGGTGTTTAAGGTATGTTTCAATGAAAAGGACTTCAAATTGCAGTGCACGTGTTGCTTATTTGAGTTTAAAGGAATTTTATGTAGACACATTCTTTGTGTGCTTAAGCTCATTGGCAAAACAGATTCAATGCCGTCTTTTTATATTTTGCCACGGTGGAGGAAGTATGTAAAGCGGAGATATACATTGATGAAACATGGTTTTGAAGAATTGCAACGTGTTAATATGGCATGTGATGCCTTTTATGAAGTTGCTTCTACTATGATAAATTCTGAAGATGATTTACAGAAAGTGATGAACAGGATCAAGGACTTGAAAACCGTGTTATCTTCTAAAGAGCCATCCTCCAGGATTACACAAGAACATACTTCAACTCCAAACCACGTGACTAGGATTGTTGATCCAACAGTAACTCTCAGTAATGGGCATCCTCTTTCAAAAAGGAAGACATCTAATGTTGATCAAATTTTAAAGAAGAAGCTTGCAAGACACAAAACTCCAAAGAACAGCAAGGAAAATAAAAACGATCAAAGTCAAGAAGAGGGCTCATTGTGTACACCTATTCTTCAAGAAACTGATGATGAAGAACATCTTAGTGATGTAAACCAGGTTCCATATTGTCCTCAAATCATAAACCAGAATATTTCCTGTTCTGAACTTTTACAGGCACAACACCATAAGAATGATCAACCATCCTCGTAA
Protein sequence

>Msa0083280

MEEIVASCDKVEKSEANKRNDDKFAAAIVVSEDEEPRTGMTFRSEEEVIRYYMNYANRVGFGVTKISSKNADDGKKYFTLACNCARRYVSTSKNPSKQYLTSKTQCRARLNACVALDGSSTISRIVIEHNHELGQTRGRYFRLDESSGTHVERNSELNDQGGINVGRNLQSVGVEMNGCGNLTSGENDCRNSVQKVRRLRLGRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKRNIQNLFWADARCRAAYEYFGEVITLDTTYLTNKYDLPLVPVVGVNHHGQTILLGCAILSNVDAKTLTWLFTRWLECMHGHAPNGIITEDDKAMKNAIEVAFPKARHRWCLWHIMKKVPEMLGKYSRNESIKTLLQDVVYDSLSKSDFMERWGNMIEHYNLHDNEWLKWLFDERHRWVPVYVKDTFWAGMSTAQRNESIDSFFDGYVNSKTTLKRFVEQYDDALNDKIEKESMADFDSFNSTIACVSHFGFEVHFQKAFTIAKFKEFQVEVSSMMYCNTSFERLEDLNSIFSVTENKKVKEKIKDVVFKVCFNEKDFKLQCTCCLFEFKGILCRHILCVLKLIGKTDSMPSFYILPRWRKYVKRRYTLMKHGFEELQRVNMACDAFYEVASTMINSEDDLQKVMNRIKDLKTVLSSKEPSSRITQEHTSTPNHVTRIVDPTVTLSNGHPLSKRKTSNVDQILKKKLARHKTPKNSKENKNDQSQEEGSLCTPILQETDDEEHLSDVNQVPYCPQIINQNISCSELLQAQHHKNDQPSS*