AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304290 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0304290 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0304290 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0304290 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0304290 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304290 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0304290 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0304290 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0304290 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0304290 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0304290 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0304290 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2_3:-61601968 Msa0304290:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2_3:+61600369 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2_3:-61599506 Msa0304290:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2_3:-61601887 Msa0304290:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 2_3:+61599088 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 2_3:+61601724 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2_3:+61601697 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2_3:+61601958 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2_3:-61601725 Msa0304290:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2_3:-61601858 Msa0304290:intron
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2_3:-61600377 Msa0304290:CDS
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2_3:-61599379 Msa0304290:intron
CACATTATTATTCTAAATCA+GGG 0.479372 2_3:+61599089 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2_3:-61599333 Msa0304290:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2_3:-61599503 Msa0304290:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2_3:-61599327 Msa0304290:three_prime_UTR
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2_3:+61599524 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 2_3:+61603349 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2_3:-61601724 Msa0304290:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 2_3:-61603306 Msa0304290:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 2_3:+61603280 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 2_3:-61600329 Msa0304290:intron
TATTGTTCTTAGTATGCACC+AGG 0.565729 2_3:-61599474 Msa0304290:intron
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2_3:-61599326 Msa0304290:three_prime_UTR
TGGAATGAGATACACAACTA+AGG 0.585500 2_3:-61601948 Msa0304290:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 2_3:-61599076 None:intergenic
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 2_3:+61603289 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2_3:-61599312 Msa0304290:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2_3:-61601752 Msa0304290:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2_3:+61601689 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2_3:+61599515 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2_3:-61601700 Msa0304290:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 2_3:+61603244 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2_3:+61601913 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2_3:+61599280 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 2_3:+61603312 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2_3:+61601688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG + chr2_3:61599631-61599650 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG + chr2_3:61602268-61602287 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG - chr2_3:61602299-61602318 Msa0304290:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG - chr2_3:61599090-61599109 Msa0304290:three_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG + chr2_3:61599303-61599322 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG + chr2_3:61599304-61599323 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG - chr2_3:61599397-61599416 Msa0304290:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG - chr2_3:61599446-61599465 Msa0304290:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG + chr2_3:61600066-61600085 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG + chr2_3:61600067-61600086 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG - chr2_3:61600440-61600459 Msa0304290:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG - chr2_3:61600850-61600869 Msa0304290:intron 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG - chr2_3:61601864-61601883 Msa0304290:CDS 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG - chr2_3:61601988-61602007 Msa0304290:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG + chr2_3:61603362-61603381 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG + chr2_3:61599389-61599408 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG - chr2_3:61599396-61599415 Msa0304290:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG - chr2_3:61599449-61599468 Msa0304290:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG - chr2_3:61599543-61599562 Msa0304290:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG + chr2_3:61599599-61599618 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr2_3:61599781-61599800 Msa0304290:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG + chr2_3:61600194-61600213 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG + chr2_3:61600624-61600643 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG - chr2_3:61600624-61600643 Msa0304290:intron 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG - chr2_3:61601792-61601811 Msa0304290:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG - chr2_3:61601863-61601882 Msa0304290:CDS 20.0%
!!! AAAACACATTTGAAACTTAA+AGG + chr2_3:61601967-61601986 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG + chr2_3:61602422-61602441 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG - chr2_3:61602536-61602555 Msa0304290:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG - chr2_3:61602791-61602810 Msa0304290:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG + chr2_3:61602887-61602906 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG + chr2_3:61602906-61602925 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG + chr2_3:61602907-61602926 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG - chr2_3:61603287-61603306 Msa0304290:CDS 20.0%
!! CACATTATTATTCTAAATCA+GGG + chr2_3:61603425-61603444 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG + chr2_3:61603426-61603445 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG - chr2_3:61599120-61599139 Msa0304290:three_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG + chr2_3:61599291-61599310 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG + chr2_3:61599292-61599311 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG - chr2_3:61599351-61599370 Msa0304290:CDS 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG + chr2_3:61599380-61599399 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG + chr2_3:61599875-61599894 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr2_3:61599940-61599959 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG + chr2_3:61599990-61600009 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG - chr2_3:61600492-61600511 Msa0304290:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2_3:61601313-61601332 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG + chr2_3:61601349-61601368 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG + chr2_3:61601350-61601369 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG - chr2_3:61601596-61601615 Msa0304290:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG - chr2_3:61601774-61601793 Msa0304290:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG - chr2_3:61601876-61601895 Msa0304290:CDS 25.0%
! GATCATTATGATTAAATTGC+AGG + chr2_3:61601908-61601927 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG + chr2_3:61602014-61602033 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG + chr2_3:61602515-61602534 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG + chr2_3:61602552-61602571 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG - chr2_3:61602552-61602571 Msa0304290:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG - chr2_3:61602992-61603011 Msa0304290:intron 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG - chr2_3:61602993-61603012 Msa0304290:intron 25.0%
! GGTGTGAAATATTGTTAAAT+AGG + chr2_3:61603112-61603131 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG + chr2_3:61599335-61599354 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG - chr2_3:61599344-61599363 Msa0304290:exon 30.0%
! CTTTTTCCATTTTACGGTAT+TGG - chr2_3:61599350-61599369 Msa0304290:CDS 30.0%
TACGATAGCAAAACAATTTC+AGG + chr2_3:61599490-61599509 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG - chr2_3:61599696-61599715 Msa0304290:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG - chr2_3:61599744-61599763 Msa0304290:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG - chr2_3:61599889-61599908 Msa0304290:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG - chr2_3:61599959-61599978 Msa0304290:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG + chr2_3:61599987-61600006 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG - chr2_3:61600089-61600108 Msa0304290:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG - chr2_3:61600095-61600114 Msa0304290:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG - chr2_3:61600132-61600151 Msa0304290:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG + chr2_3:61600237-61600256 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG - chr2_3:61600269-61600288 Msa0304290:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG - chr2_3:61600364-61600383 Msa0304290:CDS 30.0%
CTAACTAGTTCCTGTTATTA+TGG - chr2_3:61600543-61600562 Msa0304290:intron 30.0%
GTATCTCATTCCATAATAAC+AGG + chr2_3:61600556-61600575 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG - chr2_3:61600653-61600672 Msa0304290:intron 30.0%
TCTACATGAGAATTCTATGA+AGG - chr2_3:61600698-61600717 Msa0304290:intron 30.0%
CTACATGAGAATTCTATGAA+GGG - chr2_3:61600699-61600718 Msa0304290:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG - chr2_3:61600715-61600734 Msa0304290:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG - chr2_3:61600750-61600769 Msa0304290:intron 30.0%
TAATAATGTACAGGATGTCA+AGG - chr2_3:61600759-61600778 Msa0304290:intron 30.0%
TCCTGTTATGATTTACATGA+AGG - chr2_3:61600786-61600805 Msa0304290:intron 30.0%
CCTGTTATGATTTACATGAA+GGG - chr2_3:61600787-61600806 Msa0304290:intron 30.0%
ATATAATTTCTCAGGTAGCA+AGG + chr2_3:61600904-61600923 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG + chr2_3:61600912-61600931 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG - chr2_3:61600914-61600933 Msa0304290:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG - chr2_3:61600987-61601006 Msa0304290:intron 30.0%
GCTCTATCAAAAACCATATT+TGG - chr2_3:61601131-61601150 Msa0304290:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_3:61601171-61601190 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + chr2_3:61601246-61601265 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr2_3:61601247-61601266 Msa0304290:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2_3:61601317-61601336 Msa0304290:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG + chr2_3:61601348-61601367 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG + chr2_3:61601351-61601370 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG - chr2_3:61601348-61601367 Msa0304290:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG - chr2_3:61601376-61601395 Msa0304290:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG - chr2_3:61601377-61601396 Msa0304290:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG + chr2_3:61601461-61601480 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG + chr2_3:61601462-61601481 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG + chr2_3:61601463-61601482 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG - chr2_3:61601534-61601553 Msa0304290:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + chr2_3:61601592-61601611 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG - chr2_3:61601600-61601619 Msa0304290:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG - chr2_3:61601634-61601653 Msa0304290:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_3:61601654-61601673 Msa0304290:intron 30.0%
ACATGAGATTACATAAACAC+AGG + chr2_3:61601772-61601791 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG + chr2_3:61601836-61601855 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG - chr2_3:61601836-61601855 Msa0304290:intron 30.0%
TAACCTGCACAAACTTATAT+AGG - chr2_3:61601935-61601954 Msa0304290:CDS 30.0%
!! TGAATATGACTTAGCTTTAC+TGG - chr2_3:61602059-61602078 Msa0304290:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG + chr2_3:61602145-61602164 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG + chr2_3:61602175-61602194 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG + chr2_3:61602586-61602605 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG - chr2_3:61602676-61602695 Msa0304290:intron 30.0%
ACATATATCAACAACGTACA+AGG + chr2_3:61602730-61602749 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG - chr2_3:61602796-61602815 Msa0304290:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG - chr2_3:61602847-61602866 Msa0304290:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG + chr2_3:61602990-61603009 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG - chr2_3:61603005-61603024 Msa0304290:intron 30.0%
AATTGATCAACTCTTGCAAT+GGG + chr2_3:61603069-61603088 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG + chr2_3:61603070-61603089 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG + chr2_3:61599287-61599306 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG + chr2_3:61599348-61599367 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG - chr2_3:61599553-61599572 Msa0304290:intron 35.0%
CACCACATAATCAAACACAT+AGG + chr2_3:61599701-61599720 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG - chr2_3:61599907-61599926 Msa0304290:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG - chr2_3:61599911-61599930 Msa0304290:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG + chr2_3:61600036-61600055 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG + chr2_3:61600052-61600071 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG + chr2_3:61600087-61600106 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG - chr2_3:61600099-61600118 Msa0304290:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG - chr2_3:61600100-61600119 Msa0304290:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG + chr2_3:61600329-61600348 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG - chr2_3:61600498-61600517 Msa0304290:intron 35.0%
TGGAATGAGATACACAACTA+AGG - chr2_3:61600563-61600582 Msa0304290:intron 35.0%
! TTTGAAGTCATCATGTGTGT+CGG + chr2_3:61600601-61600620 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG + chr2_3:61600790-61600809 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG - chr2_3:61600930-61600949 Msa0304290:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG + chr2_3:61601127-61601146 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr2_3:61601147-61601166 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr2_3:61601166-61601185 Msa0304290:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG + chr2_3:61601180-61601199 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG - chr2_3:61601178-61601197 Msa0304290:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG - chr2_3:61601188-61601207 Msa0304290:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr2_3:61601299-61601318 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr2_3:61601304-61601323 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr2_3:61601324-61601343 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG - chr2_3:61601431-61601450 Msa0304290:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG - chr2_3:61601456-61601475 Msa0304290:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG - chr2_3:61601473-61601492 Msa0304290:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG - chr2_3:61601482-61601501 Msa0304290:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG - chr2_3:61601518-61601537 Msa0304290:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG - chr2_3:61601621-61601640 Msa0304290:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG + chr2_3:61601830-61601849 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG + chr2_3:61601941-61601960 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG - chr2_3:61601941-61601960 Msa0304290:CDS 35.0%
! TAGCTTTACTGGATGATGAA+TGG - chr2_3:61602070-61602089 Msa0304290:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG - chr2_3:61602182-61602201 Msa0304290:intron 35.0%
TTGATATATGTACATGCGTC+TGG - chr2_3:61602739-61602758 Msa0304290:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG + chr2_3:61602999-61603018 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG - chr2_3:61603008-61603027 Msa0304290:intron 35.0%
TATTGTTCTTAGTATGCACC+AGG - chr2_3:61603037-61603056 Msa0304290:intron 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG + chr2_3:61603179-61603198 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG - chr2_3:61603178-61603197 Msa0304290:intron 35.0%
! TAAAAGCACAACTAAGGTGA+TGG - chr2_3:61603184-61603203 Msa0304290:intron 35.0%
! AAAAGCACAACTAAGGTGAT+GGG - chr2_3:61603185-61603204 Msa0304290:intron 35.0%
AAGCACTTCTGATGTATGTG+AGG + chr2_3:61599202-61599221 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG - chr2_3:61599205-61599224 Msa0304290:three_prime_UTR 40.0%
! ATGGCGACCATTCTTTTCAA+GGG - chr2_3:61599224-61599243 Msa0304290:three_prime_UTR 40.0%
AGCGATTCCCTTGAAAAGAA+TGG + chr2_3:61599234-61599253 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG + chr2_3:61599359-61599378 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG - chr2_3:61599561-61599580 Msa0304290:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG - chr2_3:61599910-61599929 Msa0304290:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr2_3:61599966-61599985 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG - chr2_3:61600005-61600024 Msa0304290:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG + chr2_3:61600033-61600052 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG - chr2_3:61600240-61600259 Msa0304290:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG - chr2_3:61600251-61600270 Msa0304290:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG + chr2_3:61600261-61600280 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG + chr2_3:61600328-61600347 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG - chr2_3:61600383-61600402 Msa0304290:intron 40.0%
GAGAACTAAATCCACACTGT+GGG + chr2_3:61600825-61600844 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG + chr2_3:61600826-61600845 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG + chr2_3:61600927-61600946 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG - chr2_3:61601001-61601020 Msa0304290:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr2_3:61601159-61601178 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr2_3:61601218-61601237 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG + chr2_3:61601224-61601243 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG + chr2_3:61601234-61601253 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG - chr2_3:61601256-61601275 Msa0304290:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG - chr2_3:61601257-61601276 Msa0304290:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG - chr2_3:61601392-61601411 Msa0304290:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG - chr2_3:61601393-61601412 Msa0304290:intron 40.0%
GACGACATTAGATAGAGAGT+TGG - chr2_3:61601430-61601449 Msa0304290:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG - chr2_3:61601432-61601451 Msa0304290:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG - chr2_3:61601476-61601495 Msa0304290:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr2_3:61601704-61601723 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG - chr2_3:61601741-61601760 Msa0304290:CDS 40.0%
GAGGATGAAATCAAAAGGCA+AGG + chr2_3:61601831-61601850 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG - chr2_3:61601842-61601861 Msa0304290:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG + chr2_3:61601850-61601869 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG - chr2_3:61602134-61602153 Msa0304290:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG - chr2_3:61602147-61602166 Msa0304290:intron 40.0%
GCATGAACAAACTTACCTGT+AGG + chr2_3:61602200-61602219 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG - chr2_3:61602200-61602219 Msa0304290:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG + chr2_3:61602963-61602982 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG - chr2_3:61603121-61603140 Msa0304290:intron 40.0%
TTCAACTCACCACTCTACAA+GGG + chr2_3:61603133-61603152 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG - chr2_3:61603199-61603218 Msa0304290:intron 40.0%
ACAGATTGCATCGAACAAGT+CGG + chr2_3:61603234-61603253 None:intergenic 40.0%
!! TCTCTCTCGCTCCTGTTTTT+GGG + chr2_3:61599134-61599153 None:intergenic 45.0%
! ATCTCTCTCGCTCCTGTTTT+TGG + chr2_3:61599135-61599154 None:intergenic 45.0%
ACGCAGACAACTTCGAACTA+AGG + chr2_3:61599165-61599184 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG + chr2_3:61599225-61599244 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG - chr2_3:61599223-61599242 Msa0304290:three_prime_UTR 45.0%
TTGGAGGAACCAAACTTGAG+TGG + chr2_3:61600017-61600036 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG + chr2_3:61600817-61600836 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG - chr2_3:61601004-61601023 Msa0304290:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_3:61601077-61601096 Msa0304290:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_3:61601078-61601097 Msa0304290:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG - chr2_3:61601394-61601413 Msa0304290:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG - chr2_3:61601539-61601558 Msa0304290:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG - chr2_3:61601561-61601580 Msa0304290:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG - chr2_3:61601562-61601581 Msa0304290:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_3:61601078-61601097 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr2_3:61601705-61601724 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG - chr2_3:61601882-61601901 Msa0304290:CDS 45.0%
GTGACTGCAGAGAAAGAACA+TGG + chr2_3:61602964-61602983 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG - chr2_3:61602964-61602983 Msa0304290:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG + chr2_3:61603058-61603077 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG + chr2_3:61603134-61603153 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG - chr2_3:61603132-61603151 Msa0304290:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG + chr2_3:61599270-61599289 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG + chr2_3:61599928-61599947 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG - chr2_3:61600811-61600830 Msa0304290:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_3:61601702-61601721 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_3:61601076-61601095 Msa0304290:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_3:61601082-61601101 Msa0304290:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG - chr2_3:61601504-61601523 Msa0304290:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG - chr2_3:61601556-61601575 Msa0304290:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG - chr2_3:61601560-61601579 Msa0304290:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_3:61601082-61601101 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG - chr2_3:61602812-61602831 Msa0304290:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG - chr2_3:61602856-61602875 Msa0304290:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG + chr2_3:61602869-61602888 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_3:61601697-61601716 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_3:61601691-61601710 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_3:61601690-61601709 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_3:61601090-61601109 Msa0304290:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_3:61601690-61601709 Msa0304290:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_3:61601691-61601710 Msa0304290:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_3:61601697-61601716 Msa0304290:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61599079 61603454 61599079 ID=Msa0304290;Name=Msa0304290
chr2_3 mRNA 61599079 61603454 61599079 ID=Msa0304290-mRNA-1;Parent=Msa0304290;Name=Msa0304290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|268|158
chr2_3 exon 61599079 61599394 61599079 ID=Msa0304290-mRNA-1:exon:20482;Parent=Msa0304290-mRNA-1
chr2_3 exon 61599475 61599553 61599475 ID=Msa0304290-mRNA-1:exon:20481;Parent=Msa0304290-mRNA-1
chr2_3 exon 61600330 61600396 61600330 ID=Msa0304290-mRNA-1:exon:20480;Parent=Msa0304290-mRNA-1
chr2_3 exon 61601662 61601761 61601662 ID=Msa0304290-mRNA-1:exon:20479;Parent=Msa0304290-mRNA-1
chr2_3 exon 61601859 61601990 61601859 ID=Msa0304290-mRNA-1:exon:20478;Parent=Msa0304290-mRNA-1
chr2_3 exon 61603259 61603454 61603259 ID=Msa0304290-mRNA-1:exon:20477;Parent=Msa0304290-mRNA-1
chr2_3 five_prime_UTR 61603310 61603454 61603310 ID=Msa0304290-mRNA-1:five_prime_utr;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61603259 61603309 61603259 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61601859 61601990 61601859 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61601662 61601761 61601662 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61600330 61600396 61600330 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61599475 61599553 61599475 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 CDS 61599347 61599394 61599347 ID=Msa0304290-mRNA-1:cds;Parent=Msa0304290-mRNA-1
chr2_3 three_prime_UTR 61599079 61599346 61599079 ID=Msa0304290-mRNA-1:three_prime_utr;Parent=Msa0304290-mRNA-1
Gene Sequence

>Msa0304290

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0304290

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*