AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094920 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0094920 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0094920 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0094920 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0094920 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094920 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0094920 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0094920 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0094920 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0094920 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0094920 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0094920 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 1_2:+78344074 Msa0094920:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 1_2:-78345673 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 1_2:+78346536 Msa0094920:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 1_2:+78344155 Msa0094920:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 1_2:-78346954 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 1_2:-78344318 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 1_2:-78344345 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 1_2:-78344084 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 1_2:+78344317 Msa0094920:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 1_2:+78344184 Msa0094920:CDS
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 1_2:+78345665 Msa0094920:intron
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 1_2:+78346663 Msa0094920:intron
CACATTATTATTCTAAATCA+GGG 0.479372 1_2:-78346953 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 1_2:+78346709 Msa0094920:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 1_2:+78346539 Msa0094920:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 1_2:+78346715 Msa0094920:exon
ATGAAAACTTGTGGAAATGT+TGG 0.528223 1_2:-78346518 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 1_2:-78342693 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 1_2:+78344318 Msa0094920:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 1_2:+78342736 Msa0094920:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 1_2:-78342762 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 1_2:+78345713 Msa0094920:CDS
TATTGTTCTTAGTATGCACC+AGG 0.565729 1_2:+78346568 Msa0094920:CDS
AAAAGCACAACTAAGGTGAT+GGG 0.568881 1_2:+78346716 Msa0094920:exon
TGGAATGAGATACACAACTA+AGG 0.585500 1_2:+78344094 Msa0094920:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 1_2:+78346966 Msa0094920:three_prime_UTR
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 1_2:-78342753 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 1_2:+78346730 Msa0094920:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 1_2:+78344290 Msa0094920:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 1_2:-78344353 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 1_2:-78346527 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 1_2:+78344342 Msa0094920:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 1_2:-78342798 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 1_2:-78344129 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 1_2:-78346762 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 1_2:-78342730 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 1_2:-78344354 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG - chr1_2:78343162-78343181 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG - chr1_2:78345799-78345818 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG + chr1_2:78345830-78345849 Msa0094920:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG + chr1_2:78342621-78342640 Msa0094920:five_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG - chr1_2:78342834-78342853 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG - chr1_2:78342835-78342854 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG + chr1_2:78342928-78342947 Msa0094920:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG + chr1_2:78342977-78342996 Msa0094920:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG - chr1_2:78343597-78343616 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG - chr1_2:78343598-78343617 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG + chr1_2:78343971-78343990 Msa0094920:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG + chr1_2:78344381-78344400 Msa0094920:CDS 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG + chr1_2:78345395-78345414 Msa0094920:intron 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG + chr1_2:78345519-78345538 Msa0094920:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG - chr1_2:78346893-78346912 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG - chr1_2:78342920-78342939 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG + chr1_2:78342927-78342946 Msa0094920:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG + chr1_2:78342980-78342999 Msa0094920:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG + chr1_2:78343074-78343093 Msa0094920:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG - chr1_2:78343130-78343149 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG + chr1_2:78343312-78343331 Msa0094920:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG - chr1_2:78343725-78343744 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG - chr1_2:78344155-78344174 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG + chr1_2:78344155-78344174 Msa0094920:CDS 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG + chr1_2:78345323-78345342 Msa0094920:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG + chr1_2:78345394-78345413 Msa0094920:intron 20.0%
!!! AAAACACATTTGAAACTTAA+AGG - chr1_2:78345498-78345517 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG - chr1_2:78345953-78345972 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG + chr1_2:78346067-78346086 Msa0094920:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG + chr1_2:78346322-78346341 Msa0094920:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG - chr1_2:78346418-78346437 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG - chr1_2:78346437-78346456 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG - chr1_2:78346438-78346457 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG + chr1_2:78346818-78346837 Msa0094920:three_prime_UTR 20.0%
!! CACATTATTATTCTAAATCA+GGG - chr1_2:78346956-78346975 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG - chr1_2:78346957-78346976 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG + chr1_2:78342651-78342670 Msa0094920:five_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG - chr1_2:78342822-78342841 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG - chr1_2:78342823-78342842 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG + chr1_2:78342882-78342901 Msa0094920:intron 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG - chr1_2:78342911-78342930 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG - chr1_2:78343406-78343425 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr1_2:78343471-78343490 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG - chr1_2:78343521-78343540 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG + chr1_2:78344023-78344042 Msa0094920:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr1_2:78344844-78344863 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG - chr1_2:78344880-78344899 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG - chr1_2:78344881-78344900 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG + chr1_2:78345127-78345146 Msa0094920:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG + chr1_2:78345305-78345324 Msa0094920:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG + chr1_2:78345407-78345426 Msa0094920:intron 25.0%
! GATCATTATGATTAAATTGC+AGG - chr1_2:78345439-78345458 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG - chr1_2:78345545-78345564 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG - chr1_2:78346046-78346065 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG - chr1_2:78346083-78346102 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG + chr1_2:78346083-78346102 Msa0094920:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG + chr1_2:78346523-78346542 Msa0094920:CDS 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG + chr1_2:78346524-78346543 Msa0094920:CDS 25.0%
! GGTGTGAAATATTGTTAAAT+AGG - chr1_2:78346643-78346662 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG - chr1_2:78342866-78342885 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG + chr1_2:78342875-78342894 Msa0094920:intron 30.0%
! CTTTTTCCATTTTACGGTAT+TGG + chr1_2:78342881-78342900 Msa0094920:intron 30.0%
TACGATAGCAAAACAATTTC+AGG - chr1_2:78343021-78343040 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG + chr1_2:78343227-78343246 Msa0094920:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG + chr1_2:78343275-78343294 Msa0094920:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG + chr1_2:78343420-78343439 Msa0094920:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG + chr1_2:78343490-78343509 Msa0094920:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG - chr1_2:78343518-78343537 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG + chr1_2:78343620-78343639 Msa0094920:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG + chr1_2:78343626-78343645 Msa0094920:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG + chr1_2:78343663-78343682 Msa0094920:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG - chr1_2:78343768-78343787 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG + chr1_2:78343800-78343819 Msa0094920:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG + chr1_2:78343895-78343914 Msa0094920:intron 30.0%
CTAACTAGTTCCTGTTATTA+TGG + chr1_2:78344074-78344093 Msa0094920:CDS 30.0%
GTATCTCATTCCATAATAAC+AGG - chr1_2:78344087-78344106 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG + chr1_2:78344184-78344203 Msa0094920:CDS 30.0%
TCTACATGAGAATTCTATGA+AGG + chr1_2:78344229-78344248 Msa0094920:intron 30.0%
CTACATGAGAATTCTATGAA+GGG + chr1_2:78344230-78344249 Msa0094920:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG + chr1_2:78344246-78344265 Msa0094920:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG + chr1_2:78344281-78344300 Msa0094920:intron 30.0%
TAATAATGTACAGGATGTCA+AGG + chr1_2:78344290-78344309 Msa0094920:intron 30.0%
TCCTGTTATGATTTACATGA+AGG + chr1_2:78344317-78344336 Msa0094920:CDS 30.0%
CCTGTTATGATTTACATGAA+GGG + chr1_2:78344318-78344337 Msa0094920:CDS 30.0%
ATATAATTTCTCAGGTAGCA+AGG - chr1_2:78344435-78344454 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG - chr1_2:78344443-78344462 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG + chr1_2:78344445-78344464 Msa0094920:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG + chr1_2:78344518-78344537 Msa0094920:intron 30.0%
GCTCTATCAAAAACCATATT+TGG + chr1_2:78344662-78344681 Msa0094920:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr1_2:78344702-78344721 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG - chr1_2:78344777-78344796 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG + chr1_2:78344778-78344797 Msa0094920:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr1_2:78344848-78344867 Msa0094920:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG - chr1_2:78344879-78344898 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG - chr1_2:78344882-78344901 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG + chr1_2:78344879-78344898 Msa0094920:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG + chr1_2:78344907-78344926 Msa0094920:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG + chr1_2:78344908-78344927 Msa0094920:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG - chr1_2:78344992-78345011 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG - chr1_2:78344993-78345012 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG - chr1_2:78344994-78345013 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG + chr1_2:78345065-78345084 Msa0094920:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG - chr1_2:78345123-78345142 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG + chr1_2:78345131-78345150 Msa0094920:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG + chr1_2:78345165-78345184 Msa0094920:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_2:78345185-78345204 Msa0094920:intron 30.0%
ACATGAGATTACATAAACAC+AGG - chr1_2:78345303-78345322 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG - chr1_2:78345367-78345386 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG + chr1_2:78345367-78345386 Msa0094920:intron 30.0%
TAACCTGCACAAACTTATAT+AGG + chr1_2:78345466-78345485 Msa0094920:intron 30.0%
!! TGAATATGACTTAGCTTTAC+TGG + chr1_2:78345590-78345609 Msa0094920:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG - chr1_2:78345676-78345695 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG - chr1_2:78345706-78345725 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG - chr1_2:78346117-78346136 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG + chr1_2:78346207-78346226 Msa0094920:intron 30.0%
ACATATATCAACAACGTACA+AGG - chr1_2:78346261-78346280 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG + chr1_2:78346327-78346346 Msa0094920:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG + chr1_2:78346378-78346397 Msa0094920:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG - chr1_2:78346521-78346540 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG + chr1_2:78346536-78346555 Msa0094920:CDS 30.0%
AATTGATCAACTCTTGCAAT+GGG - chr1_2:78346600-78346619 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG - chr1_2:78346601-78346620 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG - chr1_2:78342818-78342837 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG - chr1_2:78342879-78342898 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG + chr1_2:78343084-78343103 Msa0094920:intron 35.0%
CACCACATAATCAAACACAT+AGG - chr1_2:78343232-78343251 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG + chr1_2:78343438-78343457 Msa0094920:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG + chr1_2:78343442-78343461 Msa0094920:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG - chr1_2:78343567-78343586 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG - chr1_2:78343583-78343602 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG - chr1_2:78343618-78343637 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG + chr1_2:78343630-78343649 Msa0094920:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG + chr1_2:78343631-78343650 Msa0094920:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG - chr1_2:78343860-78343879 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG + chr1_2:78344029-78344048 Msa0094920:intron 35.0%
TGGAATGAGATACACAACTA+AGG + chr1_2:78344094-78344113 Msa0094920:CDS 35.0%
! TTTGAAGTCATCATGTGTGT+CGG - chr1_2:78344132-78344151 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG - chr1_2:78344321-78344340 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG + chr1_2:78344461-78344480 Msa0094920:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG - chr1_2:78344658-78344677 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_2:78344678-78344697 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr1_2:78344697-78344716 Msa0094920:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG - chr1_2:78344711-78344730 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG + chr1_2:78344709-78344728 Msa0094920:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG + chr1_2:78344719-78344738 Msa0094920:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_2:78344830-78344849 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1_2:78344835-78344854 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr1_2:78344855-78344874 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG + chr1_2:78344962-78344981 Msa0094920:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG + chr1_2:78344987-78345006 Msa0094920:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG + chr1_2:78345004-78345023 Msa0094920:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG + chr1_2:78345013-78345032 Msa0094920:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG + chr1_2:78345049-78345068 Msa0094920:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG + chr1_2:78345152-78345171 Msa0094920:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG - chr1_2:78345361-78345380 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG - chr1_2:78345472-78345491 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG + chr1_2:78345472-78345491 Msa0094920:intron 35.0%
! TAGCTTTACTGGATGATGAA+TGG + chr1_2:78345601-78345620 Msa0094920:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG + chr1_2:78345713-78345732 Msa0094920:CDS 35.0%
TTGATATATGTACATGCGTC+TGG + chr1_2:78346270-78346289 Msa0094920:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG - chr1_2:78346530-78346549 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG + chr1_2:78346539-78346558 Msa0094920:CDS 35.0%
TATTGTTCTTAGTATGCACC+AGG + chr1_2:78346568-78346587 Msa0094920:CDS 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG - chr1_2:78346710-78346729 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG + chr1_2:78346709-78346728 Msa0094920:exon 35.0%
! TAAAAGCACAACTAAGGTGA+TGG + chr1_2:78346715-78346734 Msa0094920:exon 35.0%
! AAAAGCACAACTAAGGTGAT+GGG + chr1_2:78346716-78346735 Msa0094920:exon 35.0%
!! TCTCTCTCTCTCCTGTTTTT+GGG - chr1_2:78342665-78342684 None:intergenic 40.0%
! ATCTCTCTCTCTCCTGTTTT+TGG - chr1_2:78342666-78342685 None:intergenic 40.0%
AAGCACTTCTGATGTATGTG+AGG - chr1_2:78342733-78342752 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG + chr1_2:78342736-78342755 Msa0094920:exon 40.0%
! ATGGCGACCATTCTTTTCAA+GGG + chr1_2:78342755-78342774 Msa0094920:CDS 40.0%
AGCGATTCCCTTGAAAAGAA+TGG - chr1_2:78342765-78342784 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG - chr1_2:78342890-78342909 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG + chr1_2:78343092-78343111 Msa0094920:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG + chr1_2:78343441-78343460 Msa0094920:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG - chr1_2:78343497-78343516 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG + chr1_2:78343536-78343555 Msa0094920:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG - chr1_2:78343564-78343583 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG + chr1_2:78343771-78343790 Msa0094920:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG + chr1_2:78343782-78343801 Msa0094920:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG - chr1_2:78343792-78343811 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG - chr1_2:78343859-78343878 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG + chr1_2:78343914-78343933 Msa0094920:intron 40.0%
GAGAACTAAATCCACACTGT+GGG - chr1_2:78344356-78344375 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG - chr1_2:78344357-78344376 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG - chr1_2:78344458-78344477 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG + chr1_2:78344532-78344551 Msa0094920:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr1_2:78344690-78344709 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_2:78344749-78344768 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG - chr1_2:78344755-78344774 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG - chr1_2:78344765-78344784 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG + chr1_2:78344787-78344806 Msa0094920:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG + chr1_2:78344788-78344807 Msa0094920:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG + chr1_2:78344923-78344942 Msa0094920:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG + chr1_2:78344924-78344943 Msa0094920:intron 40.0%
GACGACATTAGATAGAGAGT+TGG + chr1_2:78344961-78344980 Msa0094920:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG + chr1_2:78344963-78344982 Msa0094920:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG + chr1_2:78345007-78345026 Msa0094920:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr1_2:78345235-78345254 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG + chr1_2:78345272-78345291 Msa0094920:intron 40.0%
GAGGATGAAATCAAAAGGCA+AGG - chr1_2:78345362-78345381 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG + chr1_2:78345373-78345392 Msa0094920:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG - chr1_2:78345381-78345400 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG + chr1_2:78345665-78345684 Msa0094920:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG + chr1_2:78345678-78345697 Msa0094920:CDS 40.0%
GCATGAACAAACTTACCTGT+AGG - chr1_2:78345731-78345750 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG + chr1_2:78345731-78345750 Msa0094920:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG - chr1_2:78346494-78346513 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG + chr1_2:78346652-78346671 Msa0094920:intron 40.0%
TTCAACTCACCACTCTACAA+GGG - chr1_2:78346664-78346683 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG + chr1_2:78346730-78346749 Msa0094920:three_prime_UTR 40.0%
ACAGATTGCATCGAACAAGT+CGG - chr1_2:78346765-78346784 None:intergenic 40.0%
ACGCAGACAACTTCGAACTA+AGG - chr1_2:78342696-78342715 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG - chr1_2:78342756-78342775 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG + chr1_2:78342754-78342773 Msa0094920:exon 45.0%
TTGGAGGAACCAAACTTGAG+TGG - chr1_2:78343548-78343567 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG - chr1_2:78344348-78344367 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG + chr1_2:78344535-78344554 Msa0094920:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_2:78344608-78344627 Msa0094920:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_2:78344609-78344628 Msa0094920:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG + chr1_2:78344925-78344944 Msa0094920:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG + chr1_2:78345070-78345089 Msa0094920:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG + chr1_2:78345092-78345111 Msa0094920:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG + chr1_2:78345093-78345112 Msa0094920:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:78344609-78344628 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr1_2:78345236-78345255 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG + chr1_2:78345413-78345432 Msa0094920:intron 45.0%
GTGACTGCAGAGAAAGAACA+TGG - chr1_2:78346495-78346514 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG + chr1_2:78346495-78346514 Msa0094920:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG - chr1_2:78346589-78346608 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG - chr1_2:78346665-78346684 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG + chr1_2:78346663-78346682 Msa0094920:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG - chr1_2:78342801-78342820 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG - chr1_2:78343459-78343478 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG + chr1_2:78344342-78344361 Msa0094920:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_2:78345233-78345252 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_2:78344607-78344626 Msa0094920:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_2:78344613-78344632 Msa0094920:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG + chr1_2:78345035-78345054 Msa0094920:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG + chr1_2:78345087-78345106 Msa0094920:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG + chr1_2:78345091-78345110 Msa0094920:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_2:78344613-78344632 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG + chr1_2:78346343-78346362 Msa0094920:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG + chr1_2:78346387-78346406 Msa0094920:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG - chr1_2:78346400-78346419 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_2:78345228-78345247 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_2:78345222-78345241 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_2:78345221-78345240 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_2:78344621-78344640 Msa0094920:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_2:78345221-78345240 Msa0094920:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_2:78345222-78345241 Msa0094920:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_2:78345228-78345247 Msa0094920:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78342610 78346985 78342610 ID=Msa0094920;Name=Msa0094920
chr1_2 mRNA 78342610 78346985 78342610 ID=Msa0094920-mRNA-1;Parent=Msa0094920;Name=Msa0094920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|268|158
chr1_2 exon 78342610 78342805 78342610 ID=Msa0094920-mRNA-1:exon:27885;Parent=Msa0094920-mRNA-1
chr1_2 exon 78344074 78344205 78344074 ID=Msa0094920-mRNA-1:exon:27886;Parent=Msa0094920-mRNA-1
chr1_2 exon 78344303 78344402 78344303 ID=Msa0094920-mRNA-1:exon:27887;Parent=Msa0094920-mRNA-1
chr1_2 exon 78345668 78345734 78345668 ID=Msa0094920-mRNA-1:exon:27888;Parent=Msa0094920-mRNA-1
chr1_2 exon 78346511 78346589 78346511 ID=Msa0094920-mRNA-1:exon:27889;Parent=Msa0094920-mRNA-1
chr1_2 exon 78346670 78346985 78346670 ID=Msa0094920-mRNA-1:exon:27890;Parent=Msa0094920-mRNA-1
chr1_2 five_prime_UTR 78342610 78342754 78342610 ID=Msa0094920-mRNA-1:five_prime_utr;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78342755 78342805 78342755 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78344074 78344205 78344074 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78344303 78344402 78344303 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78345668 78345734 78345668 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78346511 78346589 78346511 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 CDS 78346670 78346717 78346670 ID=Msa0094920-mRNA-1:cds;Parent=Msa0094920-mRNA-1
chr1_2 three_prime_UTR 78346718 78346985 78346718 ID=Msa0094920-mRNA-1:three_prime_utr;Parent=Msa0094920-mRNA-1
Gene Sequence

>Msa0094920

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0094920

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*