AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1084470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084470 MtrunA17_Chr7g0266561 100.000 80 0 0 1 80 1 80 1.03e-53 161
Msa1084470 MtrunA17_Chr6g0477821 100.000 76 0 0 1 76 1 76 1.51e-50 153
Msa1084470 MtrunA17_Chr7g0240391 38.028 71 35 1 9 70 10 80 7.24e-13 58.5
Msa1084470 MtrunA17_Chr8g0351841 35.211 71 37 1 9 70 10 80 3.16e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084470 AT2G23930.1 91.139 79 7 0 1 79 1 79 2.89e-49 150
Msa1084470 AT3G11500.2 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1084470 AT3G11500.1 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1084470 AT2G23930.2 88.679 53 6 0 27 79 1 53 1.70e-28 97.1
Msa1084470 AT2G03870.2 38.028 71 35 1 9 70 10 80 1.65e-12 57.8
Msa1084470 AT2G03870.1 38.028 71 35 1 9 70 10 80 1.65e-12 57.8

Find 41 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGACCAATTTATGAATT+TGG 0.200064 7_2:+84842391 Msa1084470:CDS
CTAACTAATTCTCAGAAGTT+AGG 0.225810 7_2:+84841270 None:intergenic
TGTGAGTGCTGGATGCATTT+AGG 0.243938 7_2:+84842782 Msa1084470:three_prime_UTR
GTGAGTGCTGGATGCATTTA+GGG 0.270068 7_2:+84842783 Msa1084470:three_prime_UTR
CAACAACCAAATTCATAAAT+TGG 0.293346 7_2:-84842397 None:intergenic
TCGAAAATTGCAGCTGTTGA+TGG 0.308847 7_2:+84842920 Msa1084470:three_prime_UTR
AATGCTTACTTCTTCAAATC+TGG 0.328903 7_2:-84841383 None:intergenic
TTCTCAGAAGTTAGGGTTTG+TGG 0.351451 7_2:+84841278 None:intergenic
AACGGAGAACGAAGATGATT+TGG 0.363843 7_2:-84841327 None:intergenic
TCTGGTTGGTTTGTGAGTGC+TGG 0.367081 7_2:+84842771 Msa1084470:three_prime_UTR
TGCAATTGTGGATTGTAATA+TGG 0.384204 7_2:+84842719 Msa1084470:three_prime_UTR
TAACTAATTCTCAGAAGTTA+GGG 0.411179 7_2:+84841271 None:intergenic
TCTTTCACCATGAGTAGGTC+AGG 0.413563 7_2:+84841353 Msa1084470:exon
AATTAGATGCTTCTGTTCAC+TGG 0.418853 7_2:-84842624 None:intergenic
ACATTTATAACTAAATTTCA+AGG 0.440241 7_2:+84842661 Msa1084470:three_prime_UTR
AGGGTTGTAGTGGATGGTAA+TGG 0.465552 7_2:+84842802 Msa1084470:three_prime_UTR
AAATGTGATTTCAACTAAAG+AGG 0.496559 7_2:-84842852 None:intergenic
GCATTTAGGGTTGTAGTGGA+TGG 0.497190 7_2:+84842796 Msa1084470:three_prime_UTR
ACAGAAACCGCTTAGATGCT+AGG 0.499392 7_2:+84842689 Msa1084470:three_prime_UTR
AATGCAAATCGCATGATTGT+TGG 0.502115 7_2:+84842356 Msa1084470:CDS
TCATAAATTGGTCGAAGCCA+CGG 0.529169 7_2:-84842385 None:intergenic
GGAGAACGAAGATGATTTGG+AGG 0.530047 7_2:-84841324 None:intergenic
CGCTTTCTGCAGGTGATCAG+AGG 0.541314 7_2:+84842570 Msa1084470:intron
AACGAAGATGATTTGGAGGG+TGG 0.546349 7_2:-84841320 None:intergenic
GGATGCATTTAGGGTTGTAG+TGG 0.555307 7_2:+84842792 Msa1084470:three_prime_UTR
TTTGTTCTTTCACCATGAGT+AGG 0.559149 7_2:+84841348 Msa1084470:exon
GACAATACTGTGGAGGTGAA+TGG 0.565835 7_2:+84842419 Msa1084470:CDS
TGGCTGCCCTGACCTACTCA+TGG 0.567702 7_2:-84841360 None:intergenic
ACTCATGGTGAAAGAACAAA+CGG 0.572630 7_2:-84841345 None:intergenic
AAATAGTGTGGTCACTGTAG+AGG 0.581425 7_2:+84842593 Msa1084470:CDS
CTAGGAGTAGAATGCAATTG+TGG 0.586469 7_2:+84842707 Msa1084470:three_prime_UTR
CTTTCACCATGAGTAGGTCA+GGG 0.590203 7_2:+84841354 Msa1084470:exon
GCTTACTTCTTCAAATCTGG+TGG 0.598528 7_2:-84841380 None:intergenic
ATGATTGTTGGTACTCTCCG+TGG 0.628986 7_2:+84842368 Msa1084470:CDS
TCATCTTAGCGAGAAATCTG+AGG 0.629688 7_2:+84842742 Msa1084470:three_prime_UTR
TTCTACTCCTAGCATCTAAG+CGG 0.649009 7_2:-84842696 None:intergenic
CATCTTAGCGAGAAATCTGA+GGG 0.651111 7_2:+84842743 Msa1084470:three_prime_UTR
TTTGGTTGTTGACAATACTG+TGG 0.664176 7_2:+84842409 Msa1084470:CDS
GAGAACGAAGATGATTTGGA+GGG 0.675668 7_2:-84841323 None:intergenic
GGTTGTTGACAATACTGTGG+AGG 0.683546 7_2:+84842412 Msa1084470:CDS
GGTGATCAGAGGAAATAGTG+TGG 0.728293 7_2:+84842581 Msa1084470:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTTTTTTTTTTTTTTAA+TGG - chr7_2:84841659-84841678 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG + chr7_2:84841727-84841746 Msa1084470:intron 10.0%
!!! AACCTTTTTTTTTTTTTTAA+TGG - chr7_2:84841659-84841678 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG + chr7_2:84841727-84841746 Msa1084470:intron 10.0%
!! TGCCATTAAAAAAAAAAAAA+AGG + chr7_2:84841654-84841673 Msa1084470:intron 15.0%
!! TATTCATATAAATCTTTCTA+CGG + chr7_2:84842153-84842172 Msa1084470:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG + chr7_2:84842661-84842680 Msa1084470:three_prime_UTR 15.0%
!! TGCCATTAAAAAAAAAAAAA+AGG + chr7_2:84841654-84841673 Msa1084470:intron 15.0%
!! TATTCATATAAATCTTTCTA+CGG + chr7_2:84842153-84842172 Msa1084470:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG + chr7_2:84842661-84842680 Msa1084470:three_prime_UTR 15.0%
!!! TATGCATTTTTTTTTTCGAT+AGG + chr7_2:84841483-84841502 Msa1084470:intron 20.0%
!! ATATGGTAGCTTATATTATT+TGG + chr7_2:84842012-84842031 Msa1084470:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG - chr7_2:84842100-84842119 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG + chr7_2:84842100-84842119 Msa1084470:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG + chr7_2:84842101-84842120 Msa1084470:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG + chr7_2:84842154-84842173 Msa1084470:intron 20.0%
!!! TATGCATTTTTTTTTTCGAT+AGG + chr7_2:84841483-84841502 Msa1084470:intron 20.0%
!! ATATGGTAGCTTATATTATT+TGG + chr7_2:84842012-84842031 Msa1084470:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG - chr7_2:84842100-84842119 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG + chr7_2:84842100-84842119 Msa1084470:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG + chr7_2:84842101-84842120 Msa1084470:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG + chr7_2:84842154-84842173 Msa1084470:intron 20.0%
!!! TTTTTTTTTCGATAGGTACA+TGG + chr7_2:84841490-84841509 Msa1084470:intron 25.0%
! TAACCACTTCTTCTATTAAT+TGG - chr7_2:84841870-84841889 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG + chr7_2:84842102-84842121 Msa1084470:intron 25.0%
! ATATGTATCTATGTACATGT+GGG + chr7_2:84842225-84842244 Msa1084470:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG + chr7_2:84842252-84842271 Msa1084470:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG - chr7_2:84842400-84842419 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG - chr7_2:84842855-84842874 None:intergenic 25.0%
!!! TTTTTTTTTCGATAGGTACA+TGG + chr7_2:84841490-84841509 Msa1084470:intron 25.0%
! TAACCACTTCTTCTATTAAT+TGG - chr7_2:84841870-84841889 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG + chr7_2:84842102-84842121 Msa1084470:intron 25.0%
! ATATGTATCTATGTACATGT+GGG + chr7_2:84842225-84842244 Msa1084470:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG + chr7_2:84842252-84842271 Msa1084470:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG - chr7_2:84842400-84842419 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG - chr7_2:84842855-84842874 None:intergenic 25.0%
AATGCTTACTTCTTCAAATC+TGG - chr7_2:84841386-84841405 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG + chr7_2:84841450-84841469 Msa1084470:intron 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG + chr7_2:84841679-84841698 Msa1084470:intron 30.0%
GATCCAATTAATAGAAGAAG+TGG + chr7_2:84841864-84841883 Msa1084470:intron 30.0%
TGTAATTTCTCTCGCTTATA+TGG + chr7_2:84841995-84842014 Msa1084470:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG + chr7_2:84842103-84842122 Msa1084470:intron 30.0%
CATGTACATAGATACATATC+AGG - chr7_2:84842224-84842243 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG + chr7_2:84842224-84842243 Msa1084470:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG + chr7_2:84842245-84842264 Msa1084470:intron 30.0%
AGGAATTATACTGAAGTATG+TGG + chr7_2:84842312-84842331 Msa1084470:intron 30.0%
CTTCGACCAATTTATGAATT+TGG + chr7_2:84842391-84842410 Msa1084470:CDS 30.0%
GCAATGAGAAAAATGACATA+GGG + chr7_2:84842441-84842460 Msa1084470:CDS 30.0%
!! ACTTGATAATGCATAGTATG+AGG - chr7_2:84842479-84842498 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG + chr7_2:84842719-84842738 Msa1084470:three_prime_UTR 30.0%
! TTCATTTATGTGCTCTTTTC+TGG + chr7_2:84842967-84842986 Msa1084470:three_prime_UTR 30.0%
AATGCTTACTTCTTCAAATC+TGG - chr7_2:84841386-84841405 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG + chr7_2:84841450-84841469 Msa1084470:intron 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG + chr7_2:84841679-84841698 Msa1084470:intron 30.0%
GATCCAATTAATAGAAGAAG+TGG + chr7_2:84841864-84841883 Msa1084470:intron 30.0%
TGTAATTTCTCTCGCTTATA+TGG + chr7_2:84841995-84842014 Msa1084470:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG + chr7_2:84842103-84842122 Msa1084470:intron 30.0%
CATGTACATAGATACATATC+AGG - chr7_2:84842224-84842243 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG + chr7_2:84842224-84842243 Msa1084470:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG + chr7_2:84842245-84842264 Msa1084470:intron 30.0%
AGGAATTATACTGAAGTATG+TGG + chr7_2:84842312-84842331 Msa1084470:intron 30.0%
CTTCGACCAATTTATGAATT+TGG + chr7_2:84842391-84842410 Msa1084470:CDS 30.0%
GCAATGAGAAAAATGACATA+GGG + chr7_2:84842441-84842460 Msa1084470:CDS 30.0%
!! ACTTGATAATGCATAGTATG+AGG - chr7_2:84842479-84842498 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG + chr7_2:84842719-84842738 Msa1084470:three_prime_UTR 30.0%
! TTCATTTATGTGCTCTTTTC+TGG + chr7_2:84842967-84842986 Msa1084470:three_prime_UTR 30.0%
ACTCATGGTGAAAGAACAAA+CGG - chr7_2:84841348-84841367 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG + chr7_2:84841348-84841367 Msa1084470:exon 35.0%
TTTCTAGGTACAAGATTGAG+TGG + chr7_2:84841777-84841796 Msa1084470:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG + chr7_2:84841778-84841797 Msa1084470:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG + chr7_2:84842034-84842053 Msa1084470:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG + chr7_2:84842292-84842311 Msa1084470:intron 35.0%
AATGCAAATCGCATGATTGT+TGG + chr7_2:84842356-84842375 Msa1084470:CDS 35.0%
TTTGGTTGTTGACAATACTG+TGG + chr7_2:84842409-84842428 Msa1084470:CDS 35.0%
GGCAATGAGAAAAATGACAT+AGG + chr7_2:84842440-84842459 Msa1084470:CDS 35.0%
TGAGAAAAATGACATAGGGA+TGG + chr7_2:84842445-84842464 Msa1084470:CDS 35.0%
AATTAGATGCTTCTGTTCAC+TGG - chr7_2:84842627-84842646 None:intergenic 35.0%
ACTCATGGTGAAAGAACAAA+CGG - chr7_2:84841348-84841367 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG + chr7_2:84841348-84841367 Msa1084470:exon 35.0%
TTTCTAGGTACAAGATTGAG+TGG + chr7_2:84841777-84841796 Msa1084470:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG + chr7_2:84841778-84841797 Msa1084470:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG + chr7_2:84842034-84842053 Msa1084470:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG + chr7_2:84842292-84842311 Msa1084470:intron 35.0%
AATGCAAATCGCATGATTGT+TGG + chr7_2:84842356-84842375 Msa1084470:CDS 35.0%
TTTGGTTGTTGACAATACTG+TGG + chr7_2:84842409-84842428 Msa1084470:CDS 35.0%
GGCAATGAGAAAAATGACAT+AGG + chr7_2:84842440-84842459 Msa1084470:CDS 35.0%
TGAGAAAAATGACATAGGGA+TGG + chr7_2:84842445-84842464 Msa1084470:CDS 35.0%
AATTAGATGCTTCTGTTCAC+TGG - chr7_2:84842627-84842646 None:intergenic 35.0%
! GAGAACGAAGATGATTTGGA+GGG - chr7_2:84841326-84841345 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG - chr7_2:84841330-84841349 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG - chr7_2:84841383-84841402 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG + chr7_2:84841511-84841530 Msa1084470:intron 40.0%
CACTATTGCTATGAGTTCAG+TGG + chr7_2:84841754-84841773 Msa1084470:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG + chr7_2:84841762-84841781 Msa1084470:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG + chr7_2:84841905-84841924 Msa1084470:intron 40.0%
TGGATTGCAGAGAAAAAGTG+TGG + chr7_2:84841942-84841961 Msa1084470:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG - chr7_2:84842112-84842131 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG - chr7_2:84842210-84842229 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG - chr7_2:84842388-84842407 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG + chr7_2:84842448-84842467 Msa1084470:CDS 40.0%
CATCTTATAGAGCTTGAGCT+AGG + chr7_2:84842524-84842543 Msa1084470:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG + chr7_2:84842560-84842579 Msa1084470:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG + chr7_2:84842593-84842612 Msa1084470:CDS 40.0%
TTCTACTCCTAGCATCTAAG+CGG - chr7_2:84842699-84842718 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG + chr7_2:84842707-84842726 Msa1084470:three_prime_UTR 40.0%
TCATCTTAGCGAGAAATCTG+AGG + chr7_2:84842742-84842761 Msa1084470:three_prime_UTR 40.0%
CATCTTAGCGAGAAATCTGA+GGG + chr7_2:84842743-84842762 Msa1084470:three_prime_UTR 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG + chr7_2:84842753-84842772 Msa1084470:three_prime_UTR 40.0%
TCGAAAATTGCAGCTGTTGA+TGG + chr7_2:84842920-84842939 Msa1084470:three_prime_UTR 40.0%
! GAGAACGAAGATGATTTGGA+GGG - chr7_2:84841326-84841345 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG - chr7_2:84841330-84841349 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG - chr7_2:84841383-84841402 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG + chr7_2:84841511-84841530 Msa1084470:intron 40.0%
CACTATTGCTATGAGTTCAG+TGG + chr7_2:84841754-84841773 Msa1084470:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG + chr7_2:84841762-84841781 Msa1084470:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG + chr7_2:84841905-84841924 Msa1084470:intron 40.0%
TGGATTGCAGAGAAAAAGTG+TGG + chr7_2:84841942-84841961 Msa1084470:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG - chr7_2:84842112-84842131 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG - chr7_2:84842210-84842229 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG - chr7_2:84842388-84842407 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG + chr7_2:84842448-84842467 Msa1084470:CDS 40.0%
CATCTTATAGAGCTTGAGCT+AGG + chr7_2:84842524-84842543 Msa1084470:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG + chr7_2:84842560-84842579 Msa1084470:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG + chr7_2:84842593-84842612 Msa1084470:CDS 40.0%
TTCTACTCCTAGCATCTAAG+CGG - chr7_2:84842699-84842718 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG + chr7_2:84842707-84842726 Msa1084470:three_prime_UTR 40.0%
TCATCTTAGCGAGAAATCTG+AGG + chr7_2:84842742-84842761 Msa1084470:three_prime_UTR 40.0%
CATCTTAGCGAGAAATCTGA+GGG + chr7_2:84842743-84842762 Msa1084470:three_prime_UTR 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG + chr7_2:84842753-84842772 Msa1084470:three_prime_UTR 40.0%
TCGAAAATTGCAGCTGTTGA+TGG + chr7_2:84842920-84842939 Msa1084470:three_prime_UTR 40.0%
! AACGAAGATGATTTGGAGGG+TGG - chr7_2:84841323-84841342 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG - chr7_2:84841327-84841346 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG + chr7_2:84841353-84841372 Msa1084470:exon 45.0%
CTTTCACCATGAGTAGGTCA+GGG + chr7_2:84841354-84841373 Msa1084470:exon 45.0%
! TACTGGCTGCGAACATTCTT+TGG + chr7_2:84841922-84841941 Msa1084470:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG + chr7_2:84842368-84842387 Msa1084470:CDS 45.0%
GGTTGTTGACAATACTGTGG+AGG + chr7_2:84842412-84842431 Msa1084470:CDS 45.0%
GACAATACTGTGGAGGTGAA+TGG + chr7_2:84842419-84842438 Msa1084470:CDS 45.0%
GGTGATCAGAGGAAATAGTG+TGG + chr7_2:84842581-84842600 Msa1084470:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG + chr7_2:84842689-84842708 Msa1084470:three_prime_UTR 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG + chr7_2:84842757-84842776 Msa1084470:three_prime_UTR 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG + chr7_2:84842782-84842801 Msa1084470:three_prime_UTR 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG + chr7_2:84842783-84842802 Msa1084470:three_prime_UTR 45.0%
! GGATGCATTTAGGGTTGTAG+TGG + chr7_2:84842792-84842811 Msa1084470:three_prime_UTR 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG + chr7_2:84842796-84842815 Msa1084470:three_prime_UTR 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG + chr7_2:84842802-84842821 Msa1084470:three_prime_UTR 45.0%
! AACGAAGATGATTTGGAGGG+TGG - chr7_2:84841323-84841342 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG - chr7_2:84841327-84841346 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG + chr7_2:84841353-84841372 Msa1084470:exon 45.0%
CTTTCACCATGAGTAGGTCA+GGG + chr7_2:84841354-84841373 Msa1084470:exon 45.0%
! TACTGGCTGCGAACATTCTT+TGG + chr7_2:84841922-84841941 Msa1084470:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG + chr7_2:84842368-84842387 Msa1084470:CDS 45.0%
GGTTGTTGACAATACTGTGG+AGG + chr7_2:84842412-84842431 Msa1084470:CDS 45.0%
GACAATACTGTGGAGGTGAA+TGG + chr7_2:84842419-84842438 Msa1084470:CDS 45.0%
GGTGATCAGAGGAAATAGTG+TGG + chr7_2:84842581-84842600 Msa1084470:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG + chr7_2:84842689-84842708 Msa1084470:three_prime_UTR 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG + chr7_2:84842757-84842776 Msa1084470:three_prime_UTR 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG + chr7_2:84842782-84842801 Msa1084470:three_prime_UTR 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG + chr7_2:84842783-84842802 Msa1084470:three_prime_UTR 45.0%
! GGATGCATTTAGGGTTGTAG+TGG + chr7_2:84842792-84842811 Msa1084470:three_prime_UTR 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG + chr7_2:84842796-84842815 Msa1084470:three_prime_UTR 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG + chr7_2:84842802-84842821 Msa1084470:three_prime_UTR 45.0%
!!! TTTTTTTTTTAAATCAAATT+TGG + chr7_2:84841583-84841602 Msa1084470:intron 5.0%
!! CTATATATATAAATATAAAA+AGG - chr7_2:84841632-84841651 None:intergenic 5.0%
!!! TTTTTTTTTTAAATCAAATT+TGG + chr7_2:84841583-84841602 Msa1084470:intron 5.0%
!! CTATATATATAAATATAAAA+AGG - chr7_2:84841632-84841651 None:intergenic 5.0%
GTGTGGCATGTCTTTGCTAC+TGG + chr7_2:84841959-84841978 Msa1084470:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG + chr7_2:84842771-84842790 Msa1084470:three_prime_UTR 50.0%
GTGTGGCATGTCTTTGCTAC+TGG + chr7_2:84841959-84841978 Msa1084470:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG + chr7_2:84842771-84842790 Msa1084470:three_prime_UTR 50.0%
CGCTTTCTGCAGGTGATCAG+AGG + chr7_2:84842570-84842589 Msa1084470:intron 55.0%
CGCTTTCTGCAGGTGATCAG+AGG + chr7_2:84842570-84842589 Msa1084470:intron 55.0%
TGGCTGCCCTGACCTACTCA+TGG - chr7_2:84841363-84841382 None:intergenic 60.0%
TGGCTGCCCTGACCTACTCA+TGG - chr7_2:84841363-84841382 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 84841283 84843001 84841283 ID=Msa1084470;Name=Msa1084470
chr7_2 mRNA 84841283 84843001 84841283 ID=Msa1084470-mRNA-1;Parent=Msa1084470;Name=Msa1084470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|4|357|80
chr7_2 exon 84841283 84841396 84841283 ID=Msa1084470-mRNA-1:exon:22763;Parent=Msa1084470-mRNA-1
chr7_2 exon 84841505 84841527 84841505 ID=Msa1084470-mRNA-1:exon:22764;Parent=Msa1084470-mRNA-1
chr7_2 exon 84842348 84842469 84842348 ID=Msa1084470-mRNA-1:exon:22765;Parent=Msa1084470-mRNA-1
chr7_2 exon 84842582 84843001 84842582 ID=Msa1084470-mRNA-1:exon:22766;Parent=Msa1084470-mRNA-1
chr7_2 five_prime_UTR 84841283 84841361 84841283 ID=Msa1084470-mRNA-1:five_prime_utr;Parent=Msa1084470-mRNA-1
chr7_2 CDS 84841362 84841396 84841362 ID=Msa1084470-mRNA-1:cds;Parent=Msa1084470-mRNA-1
chr7_2 CDS 84841505 84841527 84841505 ID=Msa1084470-mRNA-1:cds;Parent=Msa1084470-mRNA-1
chr7_2 CDS 84842348 84842469 84842348 ID=Msa1084470-mRNA-1:cds;Parent=Msa1084470-mRNA-1
chr7_2 CDS 84842582 84842644 84842582 ID=Msa1084470-mRNA-1:cds;Parent=Msa1084470-mRNA-1
chr7_2 three_prime_UTR 84842645 84843001 84842645 ID=Msa1084470-mRNA-1:three_prime_utr;Parent=Msa1084470-mRNA-1
Gene Sequence

>Msa1084470

ATGAGTAGGTCAGGGCAGCCACCAGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTCGACCAATTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTGATCAGAGGAAATAGTGTGGTCACTGTAGAGGCGCTTGAACCAGTGAACAGAAGCATCTAA

Protein sequence

>Msa1084470

MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI*