AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260210 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0260210 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0260210 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0260210 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0260210 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260210 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0260210 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0260210 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0260210 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0260210 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0260210 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0260210 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2_2:+57743696 Msa0260210:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2_2:-57745296 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2_2:+57746159 Msa0260210:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2_2:+57743777 Msa0260210:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 2_2:-57746577 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 2_2:-57743940 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2_2:-57743967 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2_2:-57743706 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2_2:+57743939 Msa0260210:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2_2:+57743806 Msa0260210:CDS
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2_2:+57745288 Msa0260210:intron
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2_2:+57746286 Msa0260210:intron
CACATTATTATTCTAAATCA+GGG 0.479372 2_2:-57746576 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2_2:+57746332 Msa0260210:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2_2:+57746162 Msa0260210:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2_2:+57746338 Msa0260210:exon
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2_2:-57746141 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 2_2:-57742315 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2_2:+57743940 Msa0260210:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 2_2:+57742358 Msa0260210:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 2_2:-57742384 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 2_2:+57745336 Msa0260210:CDS
TATTGTTCTTAGTATGCACC+AGG 0.565729 2_2:+57746191 Msa0260210:CDS
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2_2:+57746339 Msa0260210:exon
TGGAATGAGATACACAACTA+AGG 0.585500 2_2:+57743716 Msa0260210:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 2_2:+57746589 Msa0260210:three_prime_UTR
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 2_2:-57742375 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2_2:+57746353 Msa0260210:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2_2:+57743912 Msa0260210:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2_2:-57743975 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2_2:-57746150 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2_2:+57743964 Msa0260210:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 2_2:-57742420 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2_2:-57743751 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2_2:-57746385 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 2_2:-57742352 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2_2:-57743976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG - chr2_2:57742784-57742803 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG - chr2_2:57745422-57745441 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG + chr2_2:57745453-57745472 Msa0260210:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG + chr2_2:57742243-57742262 Msa0260210:five_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG - chr2_2:57742456-57742475 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG - chr2_2:57742457-57742476 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG + chr2_2:57742550-57742569 Msa0260210:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG + chr2_2:57742599-57742618 Msa0260210:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG - chr2_2:57743219-57743238 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG - chr2_2:57743220-57743239 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG + chr2_2:57743593-57743612 Msa0260210:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG + chr2_2:57744003-57744022 Msa0260210:CDS 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG + chr2_2:57745017-57745036 Msa0260210:intron 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG + chr2_2:57745141-57745160 Msa0260210:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG - chr2_2:57746516-57746535 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG - chr2_2:57742542-57742561 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG + chr2_2:57742549-57742568 Msa0260210:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG + chr2_2:57742602-57742621 Msa0260210:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG + chr2_2:57742696-57742715 Msa0260210:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG - chr2_2:57742752-57742771 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG + chr2_2:57742934-57742953 Msa0260210:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG - chr2_2:57743347-57743366 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG - chr2_2:57743777-57743796 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG + chr2_2:57743777-57743796 Msa0260210:CDS 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG + chr2_2:57744945-57744964 Msa0260210:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG + chr2_2:57745016-57745035 Msa0260210:intron 20.0%
!!! AAAACACATTTGAAACTTAA+AGG - chr2_2:57745120-57745139 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG - chr2_2:57745576-57745595 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG + chr2_2:57745690-57745709 Msa0260210:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG + chr2_2:57745945-57745964 Msa0260210:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG - chr2_2:57746041-57746060 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG - chr2_2:57746060-57746079 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG - chr2_2:57746061-57746080 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG + chr2_2:57746441-57746460 Msa0260210:three_prime_UTR 20.0%
!! CACATTATTATTCTAAATCA+GGG - chr2_2:57746579-57746598 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG - chr2_2:57746580-57746599 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG + chr2_2:57742273-57742292 Msa0260210:five_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG - chr2_2:57742444-57742463 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG - chr2_2:57742445-57742464 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG + chr2_2:57742504-57742523 Msa0260210:intron 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG - chr2_2:57742533-57742552 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG - chr2_2:57743028-57743047 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr2_2:57743093-57743112 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG - chr2_2:57743143-57743162 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG + chr2_2:57743645-57743664 Msa0260210:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr2_2:57744466-57744485 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG - chr2_2:57744502-57744521 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG - chr2_2:57744503-57744522 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG + chr2_2:57744749-57744768 Msa0260210:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG + chr2_2:57744927-57744946 Msa0260210:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG + chr2_2:57745029-57745048 Msa0260210:intron 25.0%
! GATCATTATGATTAAATTGC+AGG - chr2_2:57745061-57745080 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG - chr2_2:57745167-57745186 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG - chr2_2:57745669-57745688 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG - chr2_2:57745706-57745725 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG + chr2_2:57745706-57745725 Msa0260210:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG + chr2_2:57746146-57746165 Msa0260210:CDS 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG + chr2_2:57746147-57746166 Msa0260210:CDS 25.0%
! GGTGTGAAATATTGTTAAAT+AGG - chr2_2:57746266-57746285 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG - chr2_2:57742488-57742507 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG + chr2_2:57742497-57742516 Msa0260210:intron 30.0%
! CTTTTTCCATTTTACGGTAT+TGG + chr2_2:57742503-57742522 Msa0260210:intron 30.0%
TACGATAGCAAAACAATTTC+AGG - chr2_2:57742643-57742662 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG + chr2_2:57742849-57742868 Msa0260210:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG + chr2_2:57742897-57742916 Msa0260210:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG + chr2_2:57743042-57743061 Msa0260210:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG + chr2_2:57743112-57743131 Msa0260210:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG - chr2_2:57743140-57743159 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG + chr2_2:57743242-57743261 Msa0260210:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG + chr2_2:57743248-57743267 Msa0260210:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG + chr2_2:57743285-57743304 Msa0260210:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG - chr2_2:57743390-57743409 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG + chr2_2:57743422-57743441 Msa0260210:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG + chr2_2:57743517-57743536 Msa0260210:intron 30.0%
CTAACTAGTTCCTGTTATTA+TGG + chr2_2:57743696-57743715 Msa0260210:CDS 30.0%
GTATCTCATTCCATAATAAC+AGG - chr2_2:57743709-57743728 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG + chr2_2:57743806-57743825 Msa0260210:CDS 30.0%
TCTACATGAGAATTCTATGA+AGG + chr2_2:57743851-57743870 Msa0260210:intron 30.0%
CTACATGAGAATTCTATGAA+GGG + chr2_2:57743852-57743871 Msa0260210:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG + chr2_2:57743868-57743887 Msa0260210:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG + chr2_2:57743903-57743922 Msa0260210:intron 30.0%
TAATAATGTACAGGATGTCA+AGG + chr2_2:57743912-57743931 Msa0260210:intron 30.0%
TCCTGTTATGATTTACATGA+AGG + chr2_2:57743939-57743958 Msa0260210:CDS 30.0%
CCTGTTATGATTTACATGAA+GGG + chr2_2:57743940-57743959 Msa0260210:CDS 30.0%
ATATAATTTCTCAGGTAGCA+AGG - chr2_2:57744057-57744076 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG - chr2_2:57744065-57744084 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG + chr2_2:57744067-57744086 Msa0260210:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG + chr2_2:57744140-57744159 Msa0260210:intron 30.0%
GCTCTATCAAAAACCATATT+TGG + chr2_2:57744284-57744303 Msa0260210:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr2_2:57744324-57744343 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG - chr2_2:57744399-57744418 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG + chr2_2:57744400-57744419 Msa0260210:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr2_2:57744470-57744489 Msa0260210:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG - chr2_2:57744501-57744520 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG - chr2_2:57744504-57744523 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG + chr2_2:57744501-57744520 Msa0260210:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG + chr2_2:57744529-57744548 Msa0260210:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG + chr2_2:57744530-57744549 Msa0260210:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG - chr2_2:57744614-57744633 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG - chr2_2:57744615-57744634 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG - chr2_2:57744616-57744635 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG + chr2_2:57744687-57744706 Msa0260210:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG - chr2_2:57744745-57744764 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG + chr2_2:57744753-57744772 Msa0260210:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG + chr2_2:57744787-57744806 Msa0260210:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr2_2:57744807-57744826 Msa0260210:intron 30.0%
ACATGAGATTACATAAACAC+AGG - chr2_2:57744925-57744944 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG - chr2_2:57744989-57745008 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG + chr2_2:57744989-57745008 Msa0260210:intron 30.0%
TAACCTGCACAAACTTATAT+AGG + chr2_2:57745088-57745107 Msa0260210:intron 30.0%
!! TGAATATGACTTAGCTTTAC+TGG + chr2_2:57745213-57745232 Msa0260210:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG - chr2_2:57745299-57745318 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG - chr2_2:57745329-57745348 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG - chr2_2:57745740-57745759 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG + chr2_2:57745830-57745849 Msa0260210:intron 30.0%
ACATATATCAACAACGTACA+AGG - chr2_2:57745884-57745903 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG + chr2_2:57745950-57745969 Msa0260210:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG + chr2_2:57746001-57746020 Msa0260210:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG - chr2_2:57746144-57746163 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG + chr2_2:57746159-57746178 Msa0260210:CDS 30.0%
AATTGATCAACTCTTGCAAT+GGG - chr2_2:57746223-57746242 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG - chr2_2:57746224-57746243 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG - chr2_2:57742440-57742459 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG - chr2_2:57742501-57742520 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG + chr2_2:57742706-57742725 Msa0260210:intron 35.0%
CACCACATAATCAAACACAT+AGG - chr2_2:57742854-57742873 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG + chr2_2:57743060-57743079 Msa0260210:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG + chr2_2:57743064-57743083 Msa0260210:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG - chr2_2:57743189-57743208 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG - chr2_2:57743205-57743224 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG - chr2_2:57743240-57743259 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG + chr2_2:57743252-57743271 Msa0260210:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG + chr2_2:57743253-57743272 Msa0260210:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG - chr2_2:57743482-57743501 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG + chr2_2:57743651-57743670 Msa0260210:intron 35.0%
TGGAATGAGATACACAACTA+AGG + chr2_2:57743716-57743735 Msa0260210:CDS 35.0%
! TTTGAAGTCATCATGTGTGT+CGG - chr2_2:57743754-57743773 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG - chr2_2:57743943-57743962 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG + chr2_2:57744083-57744102 Msa0260210:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG - chr2_2:57744280-57744299 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr2_2:57744300-57744319 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr2_2:57744319-57744338 Msa0260210:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG - chr2_2:57744333-57744352 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG + chr2_2:57744331-57744350 Msa0260210:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG + chr2_2:57744341-57744360 Msa0260210:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr2_2:57744452-57744471 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr2_2:57744457-57744476 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr2_2:57744477-57744496 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG + chr2_2:57744584-57744603 Msa0260210:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG + chr2_2:57744609-57744628 Msa0260210:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG + chr2_2:57744626-57744645 Msa0260210:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG + chr2_2:57744635-57744654 Msa0260210:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG + chr2_2:57744671-57744690 Msa0260210:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG + chr2_2:57744774-57744793 Msa0260210:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG - chr2_2:57744983-57745002 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG - chr2_2:57745094-57745113 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG + chr2_2:57745094-57745113 Msa0260210:intron 35.0%
! TAGCTTTACTGGATGATGAA+TGG + chr2_2:57745224-57745243 Msa0260210:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG + chr2_2:57745336-57745355 Msa0260210:CDS 35.0%
TTGATATATGTACATGCGTC+TGG + chr2_2:57745893-57745912 Msa0260210:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG - chr2_2:57746153-57746172 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG + chr2_2:57746162-57746181 Msa0260210:CDS 35.0%
TATTGTTCTTAGTATGCACC+AGG + chr2_2:57746191-57746210 Msa0260210:CDS 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG - chr2_2:57746333-57746352 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG + chr2_2:57746332-57746351 Msa0260210:exon 35.0%
! TAAAAGCACAACTAAGGTGA+TGG + chr2_2:57746338-57746357 Msa0260210:exon 35.0%
! AAAAGCACAACTAAGGTGAT+GGG + chr2_2:57746339-57746358 Msa0260210:exon 35.0%
!! TCTCTCTCTCTCCTGTTTTT+GGG - chr2_2:57742287-57742306 None:intergenic 40.0%
! ATCTCTCTCTCTCCTGTTTT+TGG - chr2_2:57742288-57742307 None:intergenic 40.0%
AAGCACTTCTGATGTATGTG+AGG - chr2_2:57742355-57742374 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG + chr2_2:57742358-57742377 Msa0260210:exon 40.0%
! ATGGCGACCATTCTTTTCAA+GGG + chr2_2:57742377-57742396 Msa0260210:CDS 40.0%
AGCGATTCCCTTGAAAAGAA+TGG - chr2_2:57742387-57742406 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG - chr2_2:57742512-57742531 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG + chr2_2:57742714-57742733 Msa0260210:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG + chr2_2:57743063-57743082 Msa0260210:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG - chr2_2:57743119-57743138 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG + chr2_2:57743158-57743177 Msa0260210:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG - chr2_2:57743186-57743205 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG + chr2_2:57743393-57743412 Msa0260210:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG + chr2_2:57743404-57743423 Msa0260210:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG - chr2_2:57743414-57743433 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG - chr2_2:57743481-57743500 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG + chr2_2:57743536-57743555 Msa0260210:intron 40.0%
GAGAACTAAATCCACACTGT+GGG - chr2_2:57743978-57743997 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG - chr2_2:57743979-57743998 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG - chr2_2:57744080-57744099 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG + chr2_2:57744154-57744173 Msa0260210:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr2_2:57744312-57744331 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr2_2:57744371-57744390 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG - chr2_2:57744377-57744396 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG - chr2_2:57744387-57744406 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG + chr2_2:57744409-57744428 Msa0260210:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG + chr2_2:57744410-57744429 Msa0260210:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG + chr2_2:57744545-57744564 Msa0260210:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG + chr2_2:57744546-57744565 Msa0260210:intron 40.0%
GACGACATTAGATAGAGAGT+TGG + chr2_2:57744583-57744602 Msa0260210:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG + chr2_2:57744585-57744604 Msa0260210:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG + chr2_2:57744629-57744648 Msa0260210:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr2_2:57744857-57744876 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG + chr2_2:57744894-57744913 Msa0260210:intron 40.0%
GAGGATGAAATCAAAAGGCA+AGG - chr2_2:57744984-57745003 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG + chr2_2:57744995-57745014 Msa0260210:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG - chr2_2:57745003-57745022 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG + chr2_2:57745288-57745307 Msa0260210:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG + chr2_2:57745301-57745320 Msa0260210:CDS 40.0%
GCATGAACAAACTTACCTGT+AGG - chr2_2:57745354-57745373 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG + chr2_2:57745354-57745373 Msa0260210:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG - chr2_2:57746117-57746136 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG + chr2_2:57746275-57746294 Msa0260210:intron 40.0%
TTCAACTCACCACTCTACAA+GGG - chr2_2:57746287-57746306 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG + chr2_2:57746353-57746372 Msa0260210:three_prime_UTR 40.0%
ACAGATTGCATCGAACAAGT+CGG - chr2_2:57746388-57746407 None:intergenic 40.0%
ACGCAGACAACTTCGAACTA+AGG - chr2_2:57742318-57742337 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG - chr2_2:57742378-57742397 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG + chr2_2:57742376-57742395 Msa0260210:exon 45.0%
TTGGAGGAACCAAACTTGAG+TGG - chr2_2:57743170-57743189 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG - chr2_2:57743970-57743989 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG + chr2_2:57744157-57744176 Msa0260210:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr2_2:57744230-57744249 Msa0260210:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_2:57744231-57744250 Msa0260210:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG + chr2_2:57744547-57744566 Msa0260210:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG + chr2_2:57744692-57744711 Msa0260210:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG + chr2_2:57744714-57744733 Msa0260210:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG + chr2_2:57744715-57744734 Msa0260210:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_2:57744231-57744250 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr2_2:57744858-57744877 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG + chr2_2:57745035-57745054 Msa0260210:intron 45.0%
GTGACTGCAGAGAAAGAACA+TGG - chr2_2:57746118-57746137 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG + chr2_2:57746118-57746137 Msa0260210:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG - chr2_2:57746212-57746231 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG - chr2_2:57746288-57746307 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG + chr2_2:57746286-57746305 Msa0260210:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG - chr2_2:57742423-57742442 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG - chr2_2:57743081-57743100 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG + chr2_2:57743964-57743983 Msa0260210:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2_2:57744855-57744874 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2_2:57744229-57744248 Msa0260210:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_2:57744235-57744254 Msa0260210:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG + chr2_2:57744657-57744676 Msa0260210:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG + chr2_2:57744709-57744728 Msa0260210:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG + chr2_2:57744713-57744732 Msa0260210:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_2:57744235-57744254 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG + chr2_2:57745966-57745985 Msa0260210:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG + chr2_2:57746010-57746029 Msa0260210:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG - chr2_2:57746023-57746042 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_2:57744850-57744869 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_2:57744844-57744863 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_2:57744843-57744862 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr2_2:57744243-57744262 Msa0260210:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_2:57744843-57744862 Msa0260210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_2:57744844-57744863 Msa0260210:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_2:57744850-57744869 Msa0260210:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 57742232 57746608 57742232 ID=Msa0260210;Name=Msa0260210
chr2_2 mRNA 57742232 57746608 57742232 ID=Msa0260210-mRNA-1;Parent=Msa0260210;Name=Msa0260210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|268|158
chr2_2 exon 57742232 57742427 57742232 ID=Msa0260210-mRNA-1:exon:17567;Parent=Msa0260210-mRNA-1
chr2_2 exon 57743696 57743827 57743696 ID=Msa0260210-mRNA-1:exon:17568;Parent=Msa0260210-mRNA-1
chr2_2 exon 57743925 57744024 57743925 ID=Msa0260210-mRNA-1:exon:17569;Parent=Msa0260210-mRNA-1
chr2_2 exon 57745291 57745357 57745291 ID=Msa0260210-mRNA-1:exon:17570;Parent=Msa0260210-mRNA-1
chr2_2 exon 57746134 57746212 57746134 ID=Msa0260210-mRNA-1:exon:17571;Parent=Msa0260210-mRNA-1
chr2_2 exon 57746293 57746608 57746293 ID=Msa0260210-mRNA-1:exon:17572;Parent=Msa0260210-mRNA-1
chr2_2 five_prime_UTR 57742232 57742376 57742232 ID=Msa0260210-mRNA-1:five_prime_utr;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57742377 57742427 57742377 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57743696 57743827 57743696 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57743925 57744024 57743925 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57745291 57745357 57745291 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57746134 57746212 57746134 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 CDS 57746293 57746340 57746293 ID=Msa0260210-mRNA-1:cds;Parent=Msa0260210-mRNA-1
chr2_2 three_prime_UTR 57746341 57746608 57746341 ID=Msa0260210-mRNA-1:three_prime_utr;Parent=Msa0260210-mRNA-1
Gene Sequence

>Msa0260210

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0260210

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*