AlfalfaGEDB | Msa0304330

M. sativa cultivar zhongmu-4 / Msa0304330

KEGG: K07390
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
PFAM: PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0304330	XP_003597838.1	96.835	158	5	0	1	158	1	158	3.59e-110	320

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0304330	sp\|Q8LBK6\|GRS15_ARATH	63.415	164	54	3	1	158	5	168	2.47e-72	217

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0304330	G7IMH4	96.835	158	5	0	1	158	1	158	1.71e-110	320

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0304330	-0.849263	3.617324e-60	-8.615850e-47
Msa0004060	Msa0304330	0.805039	1.618390e-49	-8.615850e-47
Msa0004860	Msa0304330	0.810115	1.353467e-50	-8.615850e-47
Msa0004920	Msa0304330	0.801345	9.409432e-49	-8.615850e-47
Msa0006290	Msa0304330	0.826099	3.266931e-54	-8.615850e-47
Msa0006550	Msa0304330	0.813871	2.055095e-51	-8.615850e-47
Msa0006880	Msa0304330	0.837986	3.759225e-57	-8.615850e-47
Msa0008410	Msa0304330	0.818670	1.736792e-52	-8.615850e-47
Msa0010820	Msa0304330	0.831080	2.043841e-55	-8.615850e-47
Msa0012040	Msa0304330	0.810536	1.097765e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0304330	MtrunA17_Chr2g0332591	96.835	158	5	0	1	158	1	158	3.30e-114	320
Msa0304330	MtrunA17_Chr4g0047431	44.715	123	65	1	34	153	261	383	9.71e-30	112
Msa0304330	MtrunA17_Chr4g0047431	45.545	101	55	0	53	153	154	254	1.25e-28	109
Msa0304330	MtrunA17_Chr4g0047431	46.739	92	48	1	63	153	400	491	3.63e-25	100
Msa0304330	MtrunA17_Chr4g0006981	36.458	96	58	1	55	147	212	307	4.38e-18	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0304330	AT3G15660.2	63.415	164	54	3	1	158	5	168	2.52e-73	217
Msa0304330	AT3G15660.1	63.415	164	54	3	1	158	5	168	2.52e-73	217
Msa0304330	AT4G04950.1	46.535	101	54	0	54	154	152	252	1.48e-30	115
Msa0304330	AT4G04950.1	46.226	106	55	1	50	153	276	381	3.46e-27	105
Msa0304330	AT4G04950.1	45.000	100	55	0	54	153	389	488	3.48e-26	103
Msa0304330	AT3G54900.1	41.525	118	64	2	42	155	55	171	5.89e-29	105
Msa0304330	AT2G38270.1	41.000	100	56	1	55	151	193	292	3.00e-21	87.8

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Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACAACTAAGGTGAT+GGG	0.568881	2_3:-61633293	Msa0304330:three_prime_UTR
AAAATGCTGTAAAAGCCTAC+AGG	0.564696	2_3:-61634296	Msa0304330:intron
AAAATGTTCCTAGCACTTAA+AGG	0.239296	2_3:+61634336	None:intergenic
AAGCACTTCTGATGTATGTG+AGG	0.703909	2_3:+61637280	None:intergenic
AAGCAGTAAAAGCACAACTA+AGG	0.522251	2_3:-61633300	Msa0304330:exon
AATCCACACTGTGGGAAATC+AGG	0.415306	2_3:+61635665	None:intergenic
ACAGATTGCATCGAACAAGT+CGG	0.673003	2_3:+61633247	None:intergenic
ACGCAGACAACTTCGAACTA+AGG	0.530669	2_3:+61637317	None:intergenic
ACTAATAAAATTGAGAATTC+TGG	0.294307	2_3:-61635855	Msa0304330:CDS
AGAGAACTAAATCCACACTG+TGG	0.712972	2_3:+61635656	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACGATAGCAAAACAATTTC+AGG	+	chr2_3:61633457-61633476	None:intergenic	30.0%
TTCCTATGTGTTTGATTATG+TGG	-	chr2_3:61633663-61633682	Msa0304330:intron	30.0%
CAATTCTGTAAGTTTCATCA+TGG	-	chr2_3:61633711-61633730	Msa0304330:intron	30.0%
GTTAGAATCAATTCTTCTAG+AGG	-	chr2_3:61633856-61633875	Msa0304330:intron	30.0%
GTCTCATTCATATTCTACTA+AGG	-	chr2_3:61634056-61634075	Msa0304330:intron	30.0%
TTCATATTCTACTAAGGCAA+TGG	-	chr2_3:61634062-61634081	Msa0304330:intron	30.0%
TAACTTATGAAGACAGCTTA+TGG	+	chr2_3:61634204-61634223	None:intergenic	30.0%
TGTGGAAATAAGCTGAAAAT+AGG	-	chr2_3:61634236-61634255	Msa0304330:intron	30.0%
TCAAATCAGTCAATTCAAAC+AGG	-	chr2_3:61634331-61634350	Msa0304330:CDS	30.0%
CTAACTAGTTCCTGTTATTA+TGG	-	chr2_3:61634510-61634529	Msa0304330:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	61633046	61637422	61633046	ID=Msa0304330;Name=Msa0304330
chr2_3	mRNA	61633046	61637422	61633046	ID=Msa0304330-mRNA-1;Parent=Msa0304330;Name=Msa0304330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145\|1\|1\|1\|1\|1\|6\|268\|158
chr2_3	exon	61633046	61633361	61633046	ID=Msa0304330-mRNA-1:exon:20488;Parent=Msa0304330-mRNA-1
chr2_3	exon	61633442	61633520	61633442	ID=Msa0304330-mRNA-1:exon:20487;Parent=Msa0304330-mRNA-1
chr2_3	exon	61634297	61634363	61634297	ID=Msa0304330-mRNA-1:exon:20486;Parent=Msa0304330-mRNA-1
chr2_3	exon	61635630	61635729	61635630	ID=Msa0304330-mRNA-1:exon:20485;Parent=Msa0304330-mRNA-1
chr2_3	exon	61635827	61635958	61635827	ID=Msa0304330-mRNA-1:exon:20484;Parent=Msa0304330-mRNA-1
chr2_3	exon	61637227	61637422	61637227	ID=Msa0304330-mRNA-1:exon:20483;Parent=Msa0304330-mRNA-1
chr2_3	five_prime_UTR	61637278	61637422	61637278	ID=Msa0304330-mRNA-1:five_prime_utr;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61637227	61637277	61637227	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61635827	61635958	61635827	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61635630	61635729	61635630	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61634297	61634363	61634297	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61633442	61633520	61633442	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	CDS	61633314	61633361	61633314	ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3	three_prime_UTR	61633046	61633313	61633046	ID=Msa0304330-mRNA-1:three_prime_utr;Parent=Msa0304330-mRNA-1

Gene Sequence

>Msa0304330

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0304330

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*