AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304330 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0304330 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0304330 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0304330 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0304330 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304330 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0304330 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0304330 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0304330 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0304330 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0304330 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0304330 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2_3:-61635936 Msa0304330:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2_3:+61634336 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2_3:-61633473 Msa0304330:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2_3:-61635855 Msa0304330:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 2_3:+61633055 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 2_3:+61635692 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2_3:+61635665 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2_3:+61635926 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2_3:-61635693 Msa0304330:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2_3:-61635826 Msa0304330:intron
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2_3:-61634344 Msa0304330:CDS
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2_3:-61633346 Msa0304330:intron
CACATTATTATTCTAAATCA+GGG 0.479372 2_3:+61633056 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2_3:-61633300 Msa0304330:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2_3:-61633470 Msa0304330:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2_3:-61633294 Msa0304330:three_prime_UTR
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2_3:+61633491 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 2_3:+61637317 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2_3:-61635692 Msa0304330:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 2_3:-61637274 Msa0304330:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 2_3:+61637248 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 2_3:-61634296 Msa0304330:intron
TATTGTTCTTAGTATGCACC+AGG 0.565729 2_3:-61633441 Msa0304330:intron
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2_3:-61633293 Msa0304330:three_prime_UTR
TGGAATGAGATACACAACTA+AGG 0.585500 2_3:-61635916 Msa0304330:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 2_3:-61633043 None:intergenic
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 2_3:+61637257 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2_3:-61633279 Msa0304330:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2_3:-61635720 Msa0304330:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2_3:+61635657 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2_3:+61633482 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2_3:-61635668 Msa0304330:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 2_3:+61637212 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2_3:+61635881 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2_3:+61633247 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 2_3:+61637280 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2_3:+61635656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG + chr2_3:61633598-61633617 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG + chr2_3:61636236-61636255 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG - chr2_3:61636267-61636286 Msa0304330:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG - chr2_3:61633057-61633076 Msa0304330:three_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG + chr2_3:61633270-61633289 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG + chr2_3:61633271-61633290 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG - chr2_3:61633364-61633383 Msa0304330:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG - chr2_3:61633413-61633432 Msa0304330:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG + chr2_3:61634033-61634052 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG + chr2_3:61634034-61634053 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG - chr2_3:61634407-61634426 Msa0304330:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG - chr2_3:61634817-61634836 Msa0304330:intron 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG - chr2_3:61635831-61635850 Msa0304330:CDS 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG - chr2_3:61635955-61635974 Msa0304330:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG + chr2_3:61637330-61637349 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG + chr2_3:61633356-61633375 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG - chr2_3:61633363-61633382 Msa0304330:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG - chr2_3:61633416-61633435 Msa0304330:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG - chr2_3:61633510-61633529 Msa0304330:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG + chr2_3:61633566-61633585 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr2_3:61633748-61633767 Msa0304330:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG + chr2_3:61634161-61634180 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG + chr2_3:61634591-61634610 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG - chr2_3:61634591-61634610 Msa0304330:intron 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG - chr2_3:61635759-61635778 Msa0304330:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG - chr2_3:61635830-61635849 Msa0304330:CDS 20.0%
!!! AAAACACATTTGAAACTTAA+AGG + chr2_3:61635934-61635953 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG + chr2_3:61636390-61636409 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG - chr2_3:61636504-61636523 Msa0304330:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG - chr2_3:61636759-61636778 Msa0304330:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG + chr2_3:61636855-61636874 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG + chr2_3:61636874-61636893 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG + chr2_3:61636875-61636894 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG - chr2_3:61637255-61637274 Msa0304330:CDS 20.0%
!! CACATTATTATTCTAAATCA+GGG + chr2_3:61637393-61637412 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG + chr2_3:61637394-61637413 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG - chr2_3:61633087-61633106 Msa0304330:three_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG + chr2_3:61633258-61633277 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG + chr2_3:61633259-61633278 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG - chr2_3:61633318-61633337 Msa0304330:CDS 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG + chr2_3:61633347-61633366 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG + chr2_3:61633842-61633861 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr2_3:61633907-61633926 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG + chr2_3:61633957-61633976 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG - chr2_3:61634459-61634478 Msa0304330:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2_3:61635280-61635299 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG + chr2_3:61635316-61635335 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG + chr2_3:61635317-61635336 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG - chr2_3:61635563-61635582 Msa0304330:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG - chr2_3:61635741-61635760 Msa0304330:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG - chr2_3:61635843-61635862 Msa0304330:CDS 25.0%
! GATCATTATGATTAAATTGC+AGG + chr2_3:61635875-61635894 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG + chr2_3:61635981-61636000 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG + chr2_3:61636483-61636502 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG + chr2_3:61636520-61636539 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG - chr2_3:61636520-61636539 Msa0304330:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG - chr2_3:61636960-61636979 Msa0304330:intron 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG - chr2_3:61636961-61636980 Msa0304330:intron 25.0%
! GGTGTGAAATATTGTTAAAT+AGG + chr2_3:61637080-61637099 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG + chr2_3:61633302-61633321 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG - chr2_3:61633311-61633330 Msa0304330:exon 30.0%
! CTTTTTCCATTTTACGGTAT+TGG - chr2_3:61633317-61633336 Msa0304330:CDS 30.0%
TACGATAGCAAAACAATTTC+AGG + chr2_3:61633457-61633476 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG - chr2_3:61633663-61633682 Msa0304330:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG - chr2_3:61633711-61633730 Msa0304330:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG - chr2_3:61633856-61633875 Msa0304330:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG - chr2_3:61633926-61633945 Msa0304330:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG + chr2_3:61633954-61633973 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG - chr2_3:61634056-61634075 Msa0304330:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG - chr2_3:61634062-61634081 Msa0304330:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG - chr2_3:61634099-61634118 Msa0304330:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG + chr2_3:61634204-61634223 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG - chr2_3:61634236-61634255 Msa0304330:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG - chr2_3:61634331-61634350 Msa0304330:CDS 30.0%
CTAACTAGTTCCTGTTATTA+TGG - chr2_3:61634510-61634529 Msa0304330:intron 30.0%
GTATCTCATTCCATAATAAC+AGG + chr2_3:61634523-61634542 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG - chr2_3:61634620-61634639 Msa0304330:intron 30.0%
TCTACATGAGAATTCTATGA+AGG - chr2_3:61634665-61634684 Msa0304330:intron 30.0%
CTACATGAGAATTCTATGAA+GGG - chr2_3:61634666-61634685 Msa0304330:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG - chr2_3:61634682-61634701 Msa0304330:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG - chr2_3:61634717-61634736 Msa0304330:intron 30.0%
TAATAATGTACAGGATGTCA+AGG - chr2_3:61634726-61634745 Msa0304330:intron 30.0%
TCCTGTTATGATTTACATGA+AGG - chr2_3:61634753-61634772 Msa0304330:intron 30.0%
CCTGTTATGATTTACATGAA+GGG - chr2_3:61634754-61634773 Msa0304330:intron 30.0%
ATATAATTTCTCAGGTAGCA+AGG + chr2_3:61634871-61634890 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG + chr2_3:61634879-61634898 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG - chr2_3:61634881-61634900 Msa0304330:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG - chr2_3:61634954-61634973 Msa0304330:intron 30.0%
GCTCTATCAAAAACCATATT+TGG - chr2_3:61635098-61635117 Msa0304330:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_3:61635138-61635157 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + chr2_3:61635213-61635232 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr2_3:61635214-61635233 Msa0304330:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2_3:61635284-61635303 Msa0304330:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG + chr2_3:61635315-61635334 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG + chr2_3:61635318-61635337 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG - chr2_3:61635315-61635334 Msa0304330:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG - chr2_3:61635343-61635362 Msa0304330:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG - chr2_3:61635344-61635363 Msa0304330:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG + chr2_3:61635428-61635447 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG + chr2_3:61635429-61635448 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG + chr2_3:61635430-61635449 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG - chr2_3:61635501-61635520 Msa0304330:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + chr2_3:61635559-61635578 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG - chr2_3:61635567-61635586 Msa0304330:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG - chr2_3:61635601-61635620 Msa0304330:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_3:61635621-61635640 Msa0304330:intron 30.0%
ACATGAGATTACATAAACAC+AGG + chr2_3:61635739-61635758 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG + chr2_3:61635803-61635822 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG - chr2_3:61635803-61635822 Msa0304330:intron 30.0%
TAACCTGCACAAACTTATAT+AGG - chr2_3:61635902-61635921 Msa0304330:CDS 30.0%
!! TGAATATGACTTAGCTTTAC+TGG - chr2_3:61636027-61636046 Msa0304330:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG + chr2_3:61636113-61636132 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG + chr2_3:61636143-61636162 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG + chr2_3:61636554-61636573 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG - chr2_3:61636644-61636663 Msa0304330:intron 30.0%
ACATATATCAACAACGTACA+AGG + chr2_3:61636698-61636717 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG - chr2_3:61636764-61636783 Msa0304330:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG - chr2_3:61636815-61636834 Msa0304330:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG + chr2_3:61636958-61636977 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG - chr2_3:61636973-61636992 Msa0304330:intron 30.0%
AATTGATCAACTCTTGCAAT+GGG + chr2_3:61637037-61637056 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG + chr2_3:61637038-61637057 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG + chr2_3:61633254-61633273 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG + chr2_3:61633315-61633334 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG - chr2_3:61633520-61633539 Msa0304330:intron 35.0%
CACCACATAATCAAACACAT+AGG + chr2_3:61633668-61633687 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG - chr2_3:61633874-61633893 Msa0304330:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG - chr2_3:61633878-61633897 Msa0304330:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG + chr2_3:61634003-61634022 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG + chr2_3:61634019-61634038 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG + chr2_3:61634054-61634073 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG - chr2_3:61634066-61634085 Msa0304330:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG - chr2_3:61634067-61634086 Msa0304330:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG + chr2_3:61634296-61634315 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG - chr2_3:61634465-61634484 Msa0304330:intron 35.0%
TGGAATGAGATACACAACTA+AGG - chr2_3:61634530-61634549 Msa0304330:intron 35.0%
! TTTGAAGTCATCATGTGTGT+CGG + chr2_3:61634568-61634587 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG + chr2_3:61634757-61634776 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG - chr2_3:61634897-61634916 Msa0304330:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG + chr2_3:61635094-61635113 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr2_3:61635114-61635133 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr2_3:61635133-61635152 Msa0304330:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG + chr2_3:61635147-61635166 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG - chr2_3:61635145-61635164 Msa0304330:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG - chr2_3:61635155-61635174 Msa0304330:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr2_3:61635266-61635285 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr2_3:61635271-61635290 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr2_3:61635291-61635310 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG - chr2_3:61635398-61635417 Msa0304330:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG - chr2_3:61635423-61635442 Msa0304330:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG - chr2_3:61635440-61635459 Msa0304330:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG - chr2_3:61635449-61635468 Msa0304330:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG - chr2_3:61635485-61635504 Msa0304330:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG - chr2_3:61635588-61635607 Msa0304330:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG + chr2_3:61635797-61635816 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG + chr2_3:61635908-61635927 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG - chr2_3:61635908-61635927 Msa0304330:CDS 35.0%
! TAGCTTTACTGGATGATGAA+TGG - chr2_3:61636038-61636057 Msa0304330:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG - chr2_3:61636150-61636169 Msa0304330:intron 35.0%
TTGATATATGTACATGCGTC+TGG - chr2_3:61636707-61636726 Msa0304330:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG + chr2_3:61636967-61636986 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG - chr2_3:61636976-61636995 Msa0304330:intron 35.0%
TATTGTTCTTAGTATGCACC+AGG - chr2_3:61637005-61637024 Msa0304330:intron 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG + chr2_3:61637147-61637166 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG - chr2_3:61637146-61637165 Msa0304330:intron 35.0%
! TAAAAGCACAACTAAGGTGA+TGG - chr2_3:61637152-61637171 Msa0304330:intron 35.0%
! AAAAGCACAACTAAGGTGAT+GGG - chr2_3:61637153-61637172 Msa0304330:intron 35.0%
!! TCTCTCTCTCTCCTGTTTTT+GGG + chr2_3:61633101-61633120 None:intergenic 40.0%
! ATCTCTCTCTCTCCTGTTTT+TGG + chr2_3:61633102-61633121 None:intergenic 40.0%
AAGCACTTCTGATGTATGTG+AGG + chr2_3:61633169-61633188 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG - chr2_3:61633172-61633191 Msa0304330:three_prime_UTR 40.0%
! ATGGCGACCATTCTTTTCAA+GGG - chr2_3:61633191-61633210 Msa0304330:three_prime_UTR 40.0%
AGCGATTCCCTTGAAAAGAA+TGG + chr2_3:61633201-61633220 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG + chr2_3:61633326-61633345 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG - chr2_3:61633528-61633547 Msa0304330:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG - chr2_3:61633877-61633896 Msa0304330:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr2_3:61633933-61633952 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG - chr2_3:61633972-61633991 Msa0304330:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG + chr2_3:61634000-61634019 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG - chr2_3:61634207-61634226 Msa0304330:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG - chr2_3:61634218-61634237 Msa0304330:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG + chr2_3:61634228-61634247 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG + chr2_3:61634295-61634314 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG - chr2_3:61634350-61634369 Msa0304330:intron 40.0%
GAGAACTAAATCCACACTGT+GGG + chr2_3:61634792-61634811 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG + chr2_3:61634793-61634812 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG + chr2_3:61634894-61634913 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG - chr2_3:61634968-61634987 Msa0304330:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr2_3:61635126-61635145 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr2_3:61635185-61635204 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG + chr2_3:61635191-61635210 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG + chr2_3:61635201-61635220 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG - chr2_3:61635223-61635242 Msa0304330:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG - chr2_3:61635224-61635243 Msa0304330:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG - chr2_3:61635359-61635378 Msa0304330:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG - chr2_3:61635360-61635379 Msa0304330:intron 40.0%
GACGACATTAGATAGAGAGT+TGG - chr2_3:61635397-61635416 Msa0304330:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG - chr2_3:61635399-61635418 Msa0304330:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG - chr2_3:61635443-61635462 Msa0304330:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr2_3:61635671-61635690 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG - chr2_3:61635708-61635727 Msa0304330:CDS 40.0%
GAGGATGAAATCAAAAGGCA+AGG + chr2_3:61635798-61635817 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG - chr2_3:61635809-61635828 Msa0304330:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG + chr2_3:61635817-61635836 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG - chr2_3:61636102-61636121 Msa0304330:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG - chr2_3:61636115-61636134 Msa0304330:intron 40.0%
GCATGAACAAACTTACCTGT+AGG + chr2_3:61636168-61636187 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG - chr2_3:61636168-61636187 Msa0304330:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG + chr2_3:61636931-61636950 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG - chr2_3:61637089-61637108 Msa0304330:intron 40.0%
TTCAACTCACCACTCTACAA+GGG + chr2_3:61637101-61637120 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG - chr2_3:61637167-61637186 Msa0304330:intron 40.0%
ACAGATTGCATCGAACAAGT+CGG + chr2_3:61637202-61637221 None:intergenic 40.0%
ACGCAGACAACTTCGAACTA+AGG + chr2_3:61633132-61633151 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG + chr2_3:61633192-61633211 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG - chr2_3:61633190-61633209 Msa0304330:three_prime_UTR 45.0%
TTGGAGGAACCAAACTTGAG+TGG + chr2_3:61633984-61634003 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG + chr2_3:61634784-61634803 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG - chr2_3:61634971-61634990 Msa0304330:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_3:61635044-61635063 Msa0304330:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_3:61635045-61635064 Msa0304330:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG - chr2_3:61635361-61635380 Msa0304330:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG - chr2_3:61635506-61635525 Msa0304330:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG - chr2_3:61635528-61635547 Msa0304330:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG - chr2_3:61635529-61635548 Msa0304330:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_3:61635045-61635064 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr2_3:61635672-61635691 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG - chr2_3:61635849-61635868 Msa0304330:CDS 45.0%
GTGACTGCAGAGAAAGAACA+TGG + chr2_3:61636932-61636951 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG - chr2_3:61636932-61636951 Msa0304330:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG + chr2_3:61637026-61637045 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG + chr2_3:61637102-61637121 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG - chr2_3:61637100-61637119 Msa0304330:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG + chr2_3:61633237-61633256 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG + chr2_3:61633895-61633914 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG - chr2_3:61634778-61634797 Msa0304330:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_3:61635669-61635688 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_3:61635043-61635062 Msa0304330:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_3:61635049-61635068 Msa0304330:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG - chr2_3:61635471-61635490 Msa0304330:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG - chr2_3:61635523-61635542 Msa0304330:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG - chr2_3:61635527-61635546 Msa0304330:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_3:61635049-61635068 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG - chr2_3:61636780-61636799 Msa0304330:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG - chr2_3:61636824-61636843 Msa0304330:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG + chr2_3:61636837-61636856 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_3:61635664-61635683 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_3:61635658-61635677 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_3:61635657-61635676 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_3:61635057-61635076 Msa0304330:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_3:61635657-61635676 Msa0304330:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_3:61635658-61635677 Msa0304330:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_3:61635664-61635683 Msa0304330:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61633046 61637422 61633046 ID=Msa0304330;Name=Msa0304330
chr2_3 mRNA 61633046 61637422 61633046 ID=Msa0304330-mRNA-1;Parent=Msa0304330;Name=Msa0304330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|268|158
chr2_3 exon 61633046 61633361 61633046 ID=Msa0304330-mRNA-1:exon:20488;Parent=Msa0304330-mRNA-1
chr2_3 exon 61633442 61633520 61633442 ID=Msa0304330-mRNA-1:exon:20487;Parent=Msa0304330-mRNA-1
chr2_3 exon 61634297 61634363 61634297 ID=Msa0304330-mRNA-1:exon:20486;Parent=Msa0304330-mRNA-1
chr2_3 exon 61635630 61635729 61635630 ID=Msa0304330-mRNA-1:exon:20485;Parent=Msa0304330-mRNA-1
chr2_3 exon 61635827 61635958 61635827 ID=Msa0304330-mRNA-1:exon:20484;Parent=Msa0304330-mRNA-1
chr2_3 exon 61637227 61637422 61637227 ID=Msa0304330-mRNA-1:exon:20483;Parent=Msa0304330-mRNA-1
chr2_3 five_prime_UTR 61637278 61637422 61637278 ID=Msa0304330-mRNA-1:five_prime_utr;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61637227 61637277 61637227 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61635827 61635958 61635827 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61635630 61635729 61635630 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61634297 61634363 61634297 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61633442 61633520 61633442 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 CDS 61633314 61633361 61633314 ID=Msa0304330-mRNA-1:cds;Parent=Msa0304330-mRNA-1
chr2_3 three_prime_UTR 61633046 61633313 61633046 ID=Msa0304330-mRNA-1:three_prime_utr;Parent=Msa0304330-mRNA-1
Gene Sequence

>Msa0304330

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0304330

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*