Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039570 | sp|Q9LYP4|BAG3_ARATH | 51.327 | 339 | 123 | 8 | 1 | 333 | 1 | 303 | 4.16e-105 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0039570 | 0.843256 | 1.566568e-58 | -8.615850e-47 |
| Msa0002710 | Msa0039570 | 0.836908 | 7.101226e-57 | -8.615850e-47 |
| Msa0006110 | Msa0039570 | 0.818158 | 2.268230e-52 | -8.615850e-47 |
| Msa0014570 | Msa0039570 | 0.824309 | 8.654757e-54 | -8.615850e-47 |
| Msa0015670 | Msa0039570 | 0.817181 | 3.768019e-52 | -8.615850e-47 |
| Msa0035120 | Msa0039570 | 0.835727 | 1.417944e-56 | -8.615850e-47 |
| Msa0039570 | Msa0041860 | 0.810563 | 1.083279e-50 | -8.615850e-47 |
| Msa0039570 | Msa0056450 | 0.832459 | 9.339714e-56 | -8.615850e-47 |
| Msa0039570 | Msa0106620 | 0.814396 | 1.573937e-51 | -8.615850e-47 |
| Msa0039570 | Msa0106710 | 0.803127 | 4.043178e-49 | -8.615850e-47 |
| Msa0039570 | Msa0108390 | 0.812483 | 4.144891e-51 | -8.615850e-47 |
| Msa0039570 | Msa0116790 | 0.818734 | 1.679230e-52 | -8.615850e-47 |
| Msa0039570 | Msa0134000 | 0.802520 | 5.396170e-49 | -8.615850e-47 |
| Msa0039570 | Msa0138360 | 0.809409 | 1.919330e-50 | -8.615850e-47 |
| Msa0039570 | Msa0142460 | 0.806065 | 9.859029e-50 | -8.615850e-47 |
| Msa0039570 | Msa0147980 | 0.800990 | 1.111826e-48 | -8.615850e-47 |
| Msa0039570 | Msa0154440 | 0.807621 | 4.621409e-50 | -8.615850e-47 |
| Msa0039570 | Msa0168870 | 0.814502 | 1.490910e-51 | -8.615850e-47 |
| Msa0039570 | Msa0173390 | 0.810140 | 1.336640e-50 | -8.615850e-47 |
| Msa0039570 | Msa0181000 | 0.814738 | 1.322244e-51 | -8.615850e-47 |
| Msa0039570 | Msa0181230 | 0.840232 | 9.840519e-58 | -8.615850e-47 |
| Msa0039570 | Msa0187030 | 0.819958 | 8.833648e-53 | -8.615850e-47 |
| Msa0039570 | Msa0187830 | 0.820428 | 6.894826e-53 | -8.615850e-47 |
| Msa0039570 | Msa0188150 | 0.820425 | 6.904484e-53 | -8.615850e-47 |
| Msa0039570 | Msa0191890 | 0.837930 | 3.887500e-57 | -8.615850e-47 |
| Msa0039570 | Msa0207350 | 0.818686 | 1.721843e-52 | -8.615850e-47 |
| Msa0039570 | Msa0230370 | 0.834953 | 2.224542e-56 | -8.615850e-47 |
| Msa0039570 | Msa0259500 | 0.801772 | 7.688436e-49 | -8.615850e-47 |
| Msa0039570 | Msa0277420 | 0.843774 | 1.139322e-58 | -8.615850e-47 |
| Msa0039570 | Msa0305700 | 0.804745 | 1.864199e-49 | -8.615850e-47 |
| Msa0039570 | Msa0312530 | 0.829322 | 5.491381e-55 | -8.615850e-47 |
| Msa0039570 | Msa0317270 | 0.811677 | 6.212291e-51 | -8.615850e-47 |
| Msa0039570 | Msa0343770 | 0.833583 | 4.906170e-56 | -8.615850e-47 |
| Msa0039570 | Msa0358890 | 0.801169 | 1.021938e-48 | -8.615850e-47 |
| Msa0039570 | Msa0381610 | -0.801138 | 1.037316e-48 | -8.615850e-47 |
| Msa0039570 | Msa0429090 | 0.815505 | 8.932899e-52 | -8.615850e-47 |
| Msa0039570 | Msa0432670 | 0.809240 | 2.086776e-50 | -8.615850e-47 |
| Msa0039570 | Msa0434570 | 0.801913 | 7.192556e-49 | -8.615850e-47 |
| Msa0039570 | Msa0467100 | 0.805162 | 1.524659e-49 | -8.615850e-47 |
| Msa0039570 | Msa0468800 | 0.813771 | 2.162588e-51 | -8.615850e-47 |
| Msa0039570 | Msa0475500 | 0.806550 | 7.791977e-50 | -8.615850e-47 |
| Msa0039570 | Msa0514470 | 0.819221 | 1.301472e-52 | -8.615850e-47 |
| Msa0039570 | Msa0527190 | 0.806257 | 8.979493e-50 | -8.615850e-47 |
| Msa0039570 | Msa0534400 | 0.804528 | 2.068690e-49 | -8.615850e-47 |
| Msa0039570 | Msa0544660 | 0.816578 | 5.144914e-52 | -8.615850e-47 |
| Msa0039570 | Msa0545850 | 0.813439 | 2.558234e-51 | -8.615850e-47 |
| Msa0039570 | Msa0556010 | 0.812907 | 3.347897e-51 | -8.615850e-47 |
| Msa0039570 | Msa0559500 | 0.802906 | 4.492591e-49 | -8.615850e-47 |
| Msa0039570 | Msa0579660 | 0.852085 | 5.818022e-61 | -8.615850e-47 |
| Msa0039570 | Msa0580520 | 0.811535 | 6.669024e-51 | -8.615850e-47 |
| Msa0039570 | Msa0607320 | 0.804156 | 2.473018e-49 | -8.615850e-47 |
| Msa0039570 | Msa0613710 | 0.817900 | 2.594459e-52 | -8.615850e-47 |
| Msa0039570 | Msa0626450 | 0.801232 | 9.921715e-49 | -8.615850e-47 |
| Msa0039570 | Msa0626490 | 0.801213 | 1.001042e-48 | -8.615850e-47 |
| Msa0039570 | Msa0661320 | 0.823124 | 1.639881e-53 | -8.615850e-47 |
| Msa0039570 | Msa0664600 | 0.808194 | 3.491575e-50 | -8.615850e-47 |
| Msa0039570 | Msa0689760 | 0.804613 | 1.986521e-49 | -8.615850e-47 |
| Msa0039570 | Msa0691050 | 0.806662 | 7.376565e-50 | -8.615850e-47 |
| Msa0039570 | Msa0692880 | 0.810506 | 1.114601e-50 | -8.615850e-47 |
| Msa0039570 | Msa0716860 | 0.807745 | 4.350673e-50 | -8.615850e-47 |
| Msa0039570 | Msa0736600 | 0.819903 | 9.094659e-53 | -8.615850e-47 |
| Msa0039570 | Msa0750250 | 0.800953 | 1.131544e-48 | -8.615850e-47 |
| Msa0039570 | Msa0751260 | 0.828248 | 9.992095e-55 | -8.615850e-47 |
| Msa0039570 | Msa0756380 | 0.802340 | 5.875769e-49 | -8.615850e-47 |
| Msa0039570 | Msa0757800 | 0.836204 | 1.073099e-56 | -8.615850e-47 |
| Msa0039570 | Msa0758140 | 0.802503 | 5.439695e-49 | -8.615850e-47 |
| Msa0039570 | Msa0795070 | 0.814781 | 1.293255e-51 | -8.615850e-47 |
| Msa0039570 | Msa0795740 | 0.803843 | 2.872479e-49 | -8.615850e-47 |
| Msa0039570 | Msa0833520 | 0.824381 | 8.324789e-54 | -8.615850e-47 |
| Msa0039570 | Msa0837410 | 0.826317 | 2.898325e-54 | -8.615850e-47 |
| Msa0039570 | Msa0868160 | 0.820103 | 8.184538e-53 | -8.615850e-47 |
| Msa0039570 | Msa0868440 | 0.802912 | 4.478349e-49 | -8.615850e-47 |
| Msa0039570 | Msa0871720 | 0.822838 | 1.912148e-53 | -8.615850e-47 |
| Msa0039570 | Msa0910440 | 0.809959 | 1.461943e-50 | -8.615850e-47 |
| Msa0039570 | Msa0936390 | 0.825936 | 3.570675e-54 | -8.615850e-47 |
| Msa0039570 | Msa0937020 | 0.818991 | 1.468177e-52 | -8.615850e-47 |
| Msa0039570 | Msa0992030 | 0.806950 | 6.412635e-50 | -8.615850e-47 |
| Msa0039570 | Msa1000160 | 0.816392 | 5.662014e-52 | -8.615850e-47 |
| Msa0039570 | Msa1016620 | 0.801198 | 1.008192e-48 | -8.615850e-47 |
| Msa0039570 | Msa1022820 | 0.834509 | 2.876780e-56 | -8.615850e-47 |
| Msa0039570 | Msa1027990 | 0.802103 | 6.575404e-49 | -8.615850e-47 |
| Msa0039570 | Msa1028280 | 0.808722 | 2.693271e-50 | -8.615850e-47 |
| Msa0039570 | Msa1028590 | 0.800329 | 1.516895e-48 | -8.615850e-47 |
| Msa0039570 | Msa1031910 | 0.813914 | 2.010653e-51 | -8.615850e-47 |
| Msa0039570 | Msa1034500 | 0.828172 | 1.042156e-54 | -8.615850e-47 |
| Msa0039570 | Msa1038080 | 0.802942 | 4.414404e-49 | -8.615850e-47 |
| Msa0039570 | Msa1061980 | 0.803571 | 3.272016e-49 | -8.615850e-47 |
| Msa0039570 | Msa1080960 | 0.805635 | 1.213974e-49 | -8.615850e-47 |
| Msa0039570 | Msa1088410 | 0.812869 | 3.412422e-51 | -8.615850e-47 |
| Msa0039570 | Msa1098270 | 0.809194 | 2.134292e-50 | -8.615850e-47 |
| Msa0039570 | Msa1098290 | 0.806635 | 7.474314e-50 | -8.615850e-47 |
| Msa0039570 | Msa1118610 | 0.830944 | 2.207623e-55 | -8.615850e-47 |
| Msa0039570 | Msa1118760 | 0.803040 | 4.214012e-49 | -8.615850e-47 |
| Msa0039570 | Msa1121490 | 0.803289 | 3.741884e-49 | -8.615850e-47 |
| Msa0039570 | Msa1138320 | 0.801231 | 9.924659e-49 | -8.615850e-47 |
| Msa0039570 | Msa1139890 | 0.834334 | 3.183240e-56 | -8.615850e-47 |
| Msa0039570 | Msa1142670 | 0.804182 | 2.442357e-49 | -8.615850e-47 |
| Msa0039570 | Msa1145810 | 0.819531 | 1.105797e-52 | -8.615850e-47 |
| Msa0039570 | Msa1157570 | 0.801602 | 8.334186e-49 | -8.615850e-47 |
| Msa0039570 | Msa1204100 | -0.811123 | 8.195625e-51 | -8.615850e-47 |
| Msa0039570 | Msa1218920 | 0.804253 | 2.360698e-49 | -8.615850e-47 |
| Msa0039570 | Msa1236240 | 0.806294 | 8.819466e-50 | -8.615850e-47 |
| Msa0039570 | Msa1269890 | 0.809379 | 1.948209e-50 | -8.615850e-47 |
| Msa0039570 | Msa1298370 | 0.812491 | 4.127333e-51 | -8.615850e-47 |
| Msa0039570 | Msa1329050 | -0.802667 | 5.031476e-49 | -8.615850e-47 |
| Msa0039570 | Msa1332000 | 0.800572 | 1.353267e-48 | -8.615850e-47 |
| Msa0039570 | Msa1345810 | 0.803085 | 4.124985e-49 | -8.615850e-47 |
| Msa0039570 | Msa1348090 | 0.807679 | 4.493701e-50 | -8.615850e-47 |
| Msa0039570 | Msa1371520 | 0.806402 | 8.372616e-50 | -8.615850e-47 |
| Msa0039570 | Msa1379590 | 0.832055 | 1.175518e-55 | -8.615850e-47 |
| Msa0039570 | Msa1401270 | 0.837049 | 6.538319e-57 | -8.615850e-47 |
| Msa0039570 | Msa1408620 | -0.832886 | 7.317811e-56 | -8.615850e-47 |
| Msa0039570 | Msa1410420 | 0.808501 | 3.001946e-50 | -8.615850e-47 |
| Msa0039570 | Msa1420250 | 0.800216 | 1.599461e-48 | -8.615850e-47 |
| Msa0039570 | Msa1424640 | 0.832702 | 8.129227e-56 | -8.615850e-47 |
| Msa0039570 | Msa1453360 | 0.804906 | 1.725091e-49 | -8.615850e-47 |
| Msa0039570 | Msa1454530 | 0.818308 | 2.097876e-52 | -8.615850e-47 |
| Msa0039570 | Msa1458340 | 0.815317 | 9.837072e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039570 | MtrunA17_Chr1g0203771 | 97.898 | 333 | 7 | 0 | 1 | 333 | 1 | 333 | 0.0 | 668 |
| Msa0039570 | MtrunA17_Chr6g0473621 | 62.778 | 360 | 102 | 7 | 1 | 333 | 1 | 355 | 1.66e-138 | 396 |
| Msa0039570 | MtrunA17_Chr4g0057261 | 48.592 | 284 | 115 | 5 | 18 | 301 | 28 | 280 | 6.57e-77 | 237 |
| Msa0039570 | MtrunA17_Chr2g0285591 | 45.070 | 213 | 114 | 1 | 17 | 229 | 25 | 234 | 2.94e-62 | 198 |
| Msa0039570 | MtrunA17_Chr7g0243051 | 40.909 | 220 | 128 | 2 | 6 | 224 | 2 | 220 | 1.86e-52 | 172 |
| Msa0039570 | MtrunA17_Chr4g0007601 | 45.455 | 187 | 102 | 0 | 39 | 225 | 19 | 205 | 1.68e-49 | 166 |
| Msa0039570 | MtrunA17_Chr6g0458271 | 39.815 | 108 | 61 | 1 | 21 | 128 | 37 | 140 | 3.92e-23 | 94.0 |
| Msa0039570 | MtrunA17_Chr6g0458281 | 38.889 | 108 | 61 | 1 | 21 | 128 | 35 | 137 | 1.02e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039570 | AT5G07220.1 | 51.327 | 339 | 123 | 8 | 1 | 333 | 1 | 303 | 4.23e-106 | 313 |
| Msa0039570 | AT5G52060.1 | 53.086 | 324 | 120 | 9 | 22 | 333 | 39 | 342 | 9.27e-102 | 303 |
| Msa0039570 | AT5G62100.2 | 48.649 | 333 | 121 | 7 | 1 | 332 | 1 | 284 | 1.20e-99 | 295 |
| Msa0039570 | AT5G62100.1 | 47.093 | 344 | 121 | 8 | 1 | 332 | 1 | 295 | 5.24e-96 | 286 |
| Msa0039570 | AT5G62100.5 | 57.767 | 206 | 77 | 2 | 1 | 206 | 1 | 196 | 2.01e-79 | 241 |
| Msa0039570 | AT5G62100.4 | 57.005 | 207 | 79 | 2 | 1 | 207 | 1 | 197 | 7.95e-79 | 240 |
| Msa0039570 | AT5G62100.3 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.22e-58 | 184 |
| Msa0039570 | AT5G62100.6 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.22e-58 | 184 |
| Msa0039570 | AT3G51780.1 | 40.367 | 218 | 113 | 3 | 22 | 225 | 10 | 224 | 1.03e-44 | 154 |
| Msa0039570 | AT5G14360.1 | 37.273 | 110 | 64 | 1 | 21 | 130 | 47 | 151 | 1.19e-21 | 90.5 |
| Msa0039570 | AT5G40630.1 | 35.455 | 110 | 68 | 2 | 21 | 130 | 55 | 161 | 2.76e-20 | 86.7 |
Find 117 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAATACATTTGATATTT+TGG | 0.031025 | 1_1:+69283995 | Msa0039570:three_prime_UTR |
| TCATAAATTACAACCAAATT+TGG | 0.153385 | 1_1:+69283551 | Msa0039570:CDS |
| TGTGATTGTTGCTCCAAATT+TGG | 0.200025 | 1_1:-69283564 | None:intergenic |
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1_1:+69281872 | Msa0039570:CDS |
| GTGATTGTGTGGATGTGTTT+TGG | 0.216381 | 1_1:+69283806 | Msa0039570:three_prime_UTR |
| TTTACATCACCGGCAATAAA+TGG | 0.221444 | 1_1:+69283917 | Msa0039570:three_prime_UTR |
| ACCGGTGCCGGAAAAGTTTA+TGG | 0.223086 | 1_1:-69281410 | None:intergenic |
| TCCAAAATATCAAATGTATT+TGG | 0.249866 | 1_1:-69283996 | None:intergenic |
| CAAAGATCTACATCTTGTTT+TGG | 0.296970 | 1_1:+69281694 | Msa0039570:five_prime_UTR |
| TTGAAAATTAAGAATTCTAA+TGG | 0.299595 | 1_1:+69283444 | Msa0039570:CDS |
| AAGTTGTAGTTACTACAAAA+TGG | 0.317039 | 1_1:+69283658 | Msa0039570:CDS |
| TTTGTTGAGGCTTCTTCTTT+GGG | 0.318006 | 1_1:-69283476 | None:intergenic |
| CAACTAGAAGGCATGTCTAT+TGG | 0.328595 | 1_1:+69283525 | Msa0039570:CDS |
| ATAAATGGGGTTGCTATGAT+AGG | 0.340960 | 1_1:+69283932 | Msa0039570:three_prime_UTR |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1_1:+69282227 | Msa0039570:CDS |
| TTGGAAGTAGATAGGCTTGC+AGG | 0.354563 | 1_1:+69282446 | Msa0039570:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1_1:-69281834 | None:intergenic |
| GAAAGTACAGAAAATCAAAA+TGG | 0.359392 | 1_1:-69281102 | None:intergenic |
| GCTGAAGTGACAGGAATTAA+TGG | 0.377943 | 1_1:-69283702 | None:intergenic |
| AACTAGAAGGCATGTCTATT+GGG | 0.380751 | 1_1:+69283526 | Msa0039570:CDS |
| CCTTCTAGTTGCTCATCAAT+TGG | 0.382641 | 1_1:-69283513 | None:intergenic |
| CAGTTCATCCCAAGTTCAAA+TGG | 0.384999 | 1_1:+69283754 | Msa0039570:CDS |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1_1:+69282302 | Msa0039570:CDS |
| AAAGATCGCCGGACGGTAAC+CGG | 0.396327 | 1_1:-69281428 | None:intergenic |
| TTACATCACCGGCAATAAAT+GGG | 0.399896 | 1_1:+69283918 | Msa0039570:three_prime_UTR |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1_1:-69281774 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1_1:+69281862 | Msa0039570:CDS |
| AGTAGATAGGCTTGCAGGGC+AGG | 0.406809 | 1_1:+69282451 | Msa0039570:CDS |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1_1:-69282362 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1_1:+69281917 | Msa0039570:CDS |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1_1:+69281769 | Msa0039570:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1_1:+69283416 | Msa0039570:CDS |
| AAATTAGCTTGGAAGTAGAT+AGG | 0.412929 | 1_1:+69282438 | Msa0039570:CDS |
| CGCCGGACGGTAACCGGTGC+CGG | 0.420991 | 1_1:-69281422 | None:intergenic |
| GAAGTGTTCCCATTTGAACT+TGG | 0.421460 | 1_1:-69283763 | None:intergenic |
| CCAATTGATGAGCAACTAGA+AGG | 0.428546 | 1_1:+69283513 | Msa0039570:CDS |
| TTAGAGGAATCAATGGCGTT+TGG | 0.433140 | 1_1:-69281516 | None:intergenic |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1_1:+69282328 | Msa0039570:CDS |
| ATAGCAACCCCATTTATTGC+CGG | 0.446825 | 1_1:-69283926 | None:intergenic |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1_1:+69281740 | Msa0039570:CDS |
| GATGTAAATGACAGACTAAA+GGG | 0.451621 | 1_1:-69283902 | None:intergenic |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1_1:-69281773 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1_1:+69282334 | Msa0039570:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1_1:+69281799 | Msa0039570:CDS |
| CTCTGTTCTGGAGGAATCGA+TGG | 0.460753 | 1_1:-69281139 | None:intergenic |
| GCTTAAGTTGGATGGTATAG+TGG | 0.470152 | 1_1:+69282656 | Msa0039570:CDS |
| ATCTATTTCAGAAATTAGCT+TGG | 0.470708 | 1_1:+69282427 | Msa0039570:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1_1:-69281866 | None:intergenic |
| TGCTCAAGAGAAGAGGTACT+TGG | 0.472792 | 1_1:+69282367 | Msa0039570:CDS |
| GGGATGAACTGACTTATTAG+TGG | 0.486452 | 1_1:-69283742 | None:intergenic |
| GATGAATCAGTTGCTTAAGT+TGG | 0.489833 | 1_1:+69282644 | Msa0039570:CDS |
| AGTTGTAGTTACTACAAAAT+GGG | 0.490238 | 1_1:+69283659 | Msa0039570:CDS |
| TTCCGGCACCGGTTACCGTC+CGG | 0.491128 | 1_1:+69281420 | Msa0039570:five_prime_UTR |
| GTACTATGAAGCAAAATGTA+TGG | 0.496289 | 1_1:-69281310 | None:intergenic |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1_1:-69281806 | None:intergenic |
| AAGTGTTCCCATTTGAACTT+GGG | 0.507977 | 1_1:-69283762 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1_1:+69281748 | Msa0039570:CDS |
| TAGTCTGTCATTTACATCAC+CGG | 0.511624 | 1_1:+69283907 | Msa0039570:three_prime_UTR |
| CAATCACAGAGGATCTCAAA+CGG | 0.512206 | 1_1:+69283579 | Msa0039570:CDS |
| AAAGAATATAAAGATGGAAA+GGG | 0.514647 | 1_1:+69282397 | Msa0039570:CDS |
| GTGTCTGTATTCGTGTGGAT+TGG | 0.515990 | 1_1:+69281601 | Msa0039570:five_prime_UTR |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1_1:-69281900 | None:intergenic |
| GAAAGAATATAAAGATGGAA+AGG | 0.518162 | 1_1:+69282396 | Msa0039570:CDS |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1_1:-69282237 | None:intergenic |
| AATCAGTTGCTTAAGTTGGA+TGG | 0.521756 | 1_1:+69282648 | Msa0039570:CDS |
| AATGAGAAAGAATATAAAGA+TGG | 0.522459 | 1_1:+69282391 | Msa0039570:CDS |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1_1:+69282664 | Msa0039570:CDS |
| AAAATATCAAATGTATTTGG+AGG | 0.525365 | 1_1:-69283993 | None:intergenic |
| TCTAGTTGCTCATCAATTGG+AGG | 0.528067 | 1_1:-69283510 | None:intergenic |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1_1:+69282218 | Msa0039570:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1_1:-69281829 | None:intergenic |
| CTCGAAACAATAATTAGTAA+AGG | 0.528826 | 1_1:+69282576 | Msa0039570:CDS |
| TAATATGAGATATGAGATAG+AGG | 0.530055 | 1_1:-69281256 | None:intergenic |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1_1:+69281774 | Msa0039570:CDS |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1_1:-69281863 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1_1:+69281835 | Msa0039570:CDS |
| TGGATTTATACGTGAGTAGG+AGG | 0.542356 | 1_1:-69281290 | None:intergenic |
| AATCACAGAGGATCTCAAAC+GGG | 0.542642 | 1_1:+69283580 | Msa0039570:CDS |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1_1:+69282283 | Msa0039570:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1_1:+69281788 | Msa0039570:CDS |
| TGATGTAAATGACAGACTAA+AGG | 0.546199 | 1_1:-69283903 | None:intergenic |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1_1:-69282242 | None:intergenic |
| GATGAGGATGCTGAAGTGAC+AGG | 0.550910 | 1_1:-69283711 | None:intergenic |
| TAAATGGGGTTGCTATGATA+GGG | 0.551338 | 1_1:+69283933 | Msa0039570:three_prime_UTR |
| GAAACAATAATTAGTAAAGG+TGG | 0.554611 | 1_1:+69282579 | Msa0039570:CDS |
| AGGATGGCAGCATAGTTAGC+TGG | 0.560871 | 1_1:+69281057 | Msa0039570:five_prime_UTR |
| TGGAAGTAGATAGGCTTGCA+GGG | 0.562410 | 1_1:+69282447 | Msa0039570:CDS |
| AGTTCATCCCAAGTTCAAAT+GGG | 0.563038 | 1_1:+69283755 | Msa0039570:CDS |
| AAACAATAATTAGTAAAGGT+GGG | 0.565385 | 1_1:+69282580 | Msa0039570:CDS |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1_1:+69282663 | Msa0039570:CDS |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1_1:+69282665 | Msa0039570:CDS |
| AAAATCTGAAATAATTTGGG+AGG | 0.577119 | 1_1:-69281232 | None:intergenic |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1_1:-69281779 | None:intergenic |
| GTATGGATTTATACGTGAGT+AGG | 0.587242 | 1_1:-69281293 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1_1:+69282692 | Msa0039570:CDS |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1_1:+69282337 | Msa0039570:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1_1:-69281897 | None:intergenic |
| TCTGAGGTAGAATTCGTAGA+GGG | 0.608688 | 1_1:-69283636 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1_1:+69282360 | Msa0039570:CDS |
| AAATCTGAAATAATTTGGGA+GGG | 0.613371 | 1_1:-69281231 | None:intergenic |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1_1:+69282228 | Msa0039570:CDS |
| TGTAGTAACTACAACTTCTG+AGG | 0.617406 | 1_1:-69283652 | None:intergenic |
| TACATCACCGGCAATAAATG+GGG | 0.617659 | 1_1:+69283919 | Msa0039570:three_prime_UTR |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1_1:-69281860 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1_1:+69281764 | Msa0039570:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.625206 | 1_1:+69283447 | Msa0039570:CDS |
| GTGCAATGTATGTGATTGTG+TGG | 0.625668 | 1_1:+69283795 | Msa0039570:three_prime_UTR |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1_1:+69281775 | Msa0039570:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1_1:+69282682 | Msa0039570:CDS |
| TGTATAAGAAGAGATTTGGG+TGG | 0.649734 | 1_1:+69281650 | Msa0039570:five_prime_UTR |
| TTCTGAGGTAGAATTCGTAG+AGG | 0.661653 | 1_1:-69283637 | None:intergenic |
| ATTAGTGGATGAGCTTGATG+AGG | 0.669613 | 1_1:-69283727 | None:intergenic |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1_1:+69281743 | Msa0039570:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1_1:+69281823 | Msa0039570:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1_1:+69281791 | Msa0039570:CDS |
| GAAGTGACAGGAATTAATGG+TGG | 0.757122 | 1_1:-69283699 | None:intergenic |
| ATTTGGAGCAACAATCACAG+AGG | 0.771841 | 1_1:+69283568 | Msa0039570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAAAA+GGG | - | chr1_1:69281958-69281977 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAATAAA+AGG | - | chr1_1:69281959-69281978 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | - | chr1_1:69281956-69281975 | None:intergenic | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | - | chr1_1:69282897-69282916 | None:intergenic | 10.0% |
| !! | GACAAAAAAAAAAAAAAAAT+TGG | - | chr1_1:69282960-69282979 | None:intergenic | 10.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | - | chr1_1:69281955-69281974 | None:intergenic | 15.0% |
| !! | GATTAAATAAATCATTTATC+TGG | + | chr1_1:69282106-69282125 | Msa0039570:intron | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | - | chr1_1:69282262-69282281 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | + | chr1_1:69282485-69282504 | Msa0039570:intron | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | + | chr1_1:69282513-69282532 | Msa0039570:intron | 15.0% |
| !! | AAAAATTATGACATCTAATT+TGG | + | chr1_1:69282823-69282842 | Msa0039570:intron | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | - | chr1_1:69282898-69282917 | None:intergenic | 15.0% |
| !!! | TAAATTAGGTCATTTAAAAT+GGG | - | chr1_1:69282996-69283015 | None:intergenic | 15.0% |
| !! | TTAAATTAGGTCATTTAAAA+TGG | - | chr1_1:69282997-69283016 | None:intergenic | 15.0% |
| !!! | ATAATGCACATTTTTAAATT+AGG | - | chr1_1:69283010-69283029 | None:intergenic | 15.0% |
| !!! | GATATTTAAAATCAAAATTG+TGG | + | chr1_1:69283155-69283174 | Msa0039570:intron | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | + | chr1_1:69283336-69283355 | Msa0039570:intron | 15.0% |
| !! | TTGAAAATTAAGAATTCTAA+TGG | + | chr1_1:69283444-69283463 | Msa0039570:CDS | 15.0% |
| !! | AAAAACAAATTCCTCATTAT+TGG | + | chr1_1:69281164-69281183 | Msa0039570:five_prime_UTR | 20.0% |
| !! | AAAAAACAATTCCAATAATG+AGG | - | chr1_1:69281178-69281197 | None:intergenic | 20.0% |
| !!! | GGAAAAATCTGAAATAATTT+GGG | - | chr1_1:69281238-69281257 | None:intergenic | 20.0% |
| !!! | AGGAAAAATCTGAAATAATT+TGG | - | chr1_1:69281239-69281258 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCATAAACTTTTC+CGG | + | chr1_1:69281403-69281422 | Msa0039570:five_prime_UTR | 20.0% |
| !!! | TTTTTTCTTTCCTTTTTTAG+AGG | - | chr1_1:69281535-69281554 | None:intergenic | 20.0% |
| !!! | TTTTTGTATAAGAAGAGATT+TGG | + | chr1_1:69281646-69281665 | Msa0039570:five_prime_UTR | 20.0% |
| !!! | TTTTGTATAAGAAGAGATTT+GGG | + | chr1_1:69281647-69281666 | Msa0039570:five_prime_UTR | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | + | chr1_1:69281872-69281891 | Msa0039570:CDS | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | - | chr1_1:69281954-69281973 | None:intergenic | 20.0% |
| !! | AAAAATCAATCATTCGATAT+CGG | - | chr1_1:69282153-69282172 | None:intergenic | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | + | chr1_1:69282273-69282292 | Msa0039570:CDS | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | + | chr1_1:69282274-69282293 | Msa0039570:CDS | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | + | chr1_1:69282328-69282347 | Msa0039570:CDS | 20.0% |
| !! | AATGAGAAAGAATATAAAGA+TGG | + | chr1_1:69282391-69282410 | Msa0039570:CDS | 20.0% |
| !! | AAAGAATATAAAGATGGAAA+GGG | + | chr1_1:69282397-69282416 | Msa0039570:CDS | 20.0% |
| !! | AAACAATAATTAGTAAAGGT+GGG | + | chr1_1:69282580-69282599 | Msa0039570:CDS | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | + | chr1_1:69283383-69283402 | Msa0039570:intron | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | + | chr1_1:69283447-69283466 | Msa0039570:CDS | 20.0% |
| !! | TCATAAATTACAACCAAATT+TGG | + | chr1_1:69283551-69283570 | Msa0039570:CDS | 20.0% |
| !! | AAAATATCAAATGTATTTGG+AGG | - | chr1_1:69283996-69284015 | None:intergenic | 20.0% |
| !!! | TCCAAATACATTTGATATTT+TGG | + | chr1_1:69283995-69284014 | Msa0039570:three_prime_UTR | 20.0% |
| !! | TCCAAAATATCAAATGTATT+TGG | - | chr1_1:69283999-69284018 | None:intergenic | 20.0% |
| ! | GAAATGAATATAAAAACGTG+TGG | - | chr1_1:69281083-69281102 | None:intergenic | 25.0% |
| !! | GAAAGTACAGAAAATCAAAA+TGG | - | chr1_1:69281105-69281124 | None:intergenic | 25.0% |
| ! | GAATGTGAAGTCAAAAAAAT+AGG | - | chr1_1:69281205-69281224 | None:intergenic | 25.0% |
| !! | AAATCTGAAATAATTTGGGA+GGG | - | chr1_1:69281234-69281253 | None:intergenic | 25.0% |
| !! | AAAATCTGAAATAATTTGGG+AGG | - | chr1_1:69281235-69281254 | None:intergenic | 25.0% |
| ! | TAATATGAGATATGAGATAG+AGG | - | chr1_1:69281259-69281278 | None:intergenic | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | - | chr1_1:69281869-69281888 | None:intergenic | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | + | chr1_1:69282185-69282204 | Msa0039570:intron | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | + | chr1_1:69282218-69282237 | Msa0039570:CDS | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | - | chr1_1:69282259-69282278 | None:intergenic | 25.0% |
| ! | GAAAGAATATAAAGATGGAA+AGG | + | chr1_1:69282396-69282415 | Msa0039570:CDS | 25.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | + | chr1_1:69282427-69282446 | Msa0039570:CDS | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | + | chr1_1:69282545-69282564 | Msa0039570:intron | 25.0% |
| ! | CTCGAAACAATAATTAGTAA+AGG | + | chr1_1:69282576-69282595 | Msa0039570:CDS | 25.0% |
| ! | GAAACAATAATTAGTAAAGG+TGG | + | chr1_1:69282579-69282598 | Msa0039570:CDS | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | - | chr1_1:69282769-69282788 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | - | chr1_1:69282779-69282798 | None:intergenic | 25.0% |
| ! | ATGAAAATAACATTTAGTCC+CGG | + | chr1_1:69282852-69282871 | Msa0039570:intron | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | + | chr1_1:69282908-69282927 | Msa0039570:intron | 25.0% |
| ! | TCAACTGTGTCATATAATAT+AGG | + | chr1_1:69283197-69283216 | Msa0039570:intron | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | + | chr1_1:69283364-69283383 | Msa0039570:intron | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | + | chr1_1:69283416-69283435 | Msa0039570:CDS | 25.0% |
| ! | AAGTTGTAGTTACTACAAAA+TGG | + | chr1_1:69283658-69283677 | Msa0039570:CDS | 25.0% |
| ! | AGTTGTAGTTACTACAAAAT+GGG | + | chr1_1:69283659-69283678 | Msa0039570:CDS | 25.0% |
| !! | ATTTGTTTTTCTCTCTGTTC+TGG | - | chr1_1:69281154-69281173 | None:intergenic | 30.0% |
| GTACTATGAAGCAAAATGTA+TGG | - | chr1_1:69281313-69281332 | None:intergenic | 30.0% | |
| ! | TCAGTACTTTCAGATTTTAC+AGG | + | chr1_1:69281343-69281362 | Msa0039570:five_prime_UTR | 30.0% |
| ! | ACGTGAATACTAAGATTTTG+TGG | + | chr1_1:69281465-69281484 | Msa0039570:intron | 30.0% |
| !!! | TCCTTTTTTAGAGGAATCAA+TGG | - | chr1_1:69281526-69281545 | None:intergenic | 30.0% |
| !!! | AAGCTGAAACAAAGCTTTTT+TGG | + | chr1_1:69281561-69281580 | Msa0039570:five_prime_UTR | 30.0% |
| GAATACAGACACAAAAACAA+AGG | - | chr1_1:69281593-69281612 | None:intergenic | 30.0% | |
| !! | CAAAGATCTACATCTTGTTT+TGG | + | chr1_1:69281694-69281713 | Msa0039570:five_prime_UTR | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | - | chr1_1:69281903-69281922 | None:intergenic | 30.0% |
| ATTAGTTCACAAGCAACATT+TGG | + | chr1_1:69281917-69281936 | Msa0039570:CDS | 30.0% | |
| !! | TGATTAATGTTTGGTGTCAT+AGG | + | chr1_1:69282194-69282213 | Msa0039570:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | + | chr1_1:69282195-69282214 | Msa0039570:intron | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | + | chr1_1:69282196-69282215 | Msa0039570:intron | 30.0% |
| TAAATCAAAGTTAGTGGTGA+TGG | + | chr1_1:69282334-69282353 | Msa0039570:CDS | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | + | chr1_1:69282438-69282457 | Msa0039570:CDS | 30.0% |
| ! | TTAGGTCATTTAAAATGGGA+CGG | - | chr1_1:69282992-69283011 | None:intergenic | 30.0% |
| TGTCATATAATATAGGACGA+CGG | + | chr1_1:69283204-69283223 | Msa0039570:intron | 30.0% | |
| !!! | GGCAATTTTACTTTTTGTTG+AGG | - | chr1_1:69283492-69283511 | None:intergenic | 30.0% |
| !!! | TTTTGGGTTTGTTTTCTACT+TGG | + | chr1_1:69283823-69283842 | Msa0039570:three_prime_UTR | 30.0% |
| GATGTAAATGACAGACTAAA+GGG | - | chr1_1:69283905-69283924 | None:intergenic | 30.0% | |
| TGATGTAAATGACAGACTAA+AGG | - | chr1_1:69283906-69283925 | None:intergenic | 30.0% | |
| GTATGGATTTATACGTGAGT+AGG | - | chr1_1:69281296-69281315 | None:intergenic | 35.0% | |
| ! | TAAGATTTTGTGGTTCACGT+TGG | + | chr1_1:69281475-69281494 | Msa0039570:intron | 35.0% |
| ! | AAGATTTTGTGGTTCACGTT+GGG | + | chr1_1:69281476-69281495 | Msa0039570:intron | 35.0% |
| !! | GCCATTGATTCCTCTAAAAA+AGG | + | chr1_1:69281522-69281541 | Msa0039570:five_prime_UTR | 35.0% |
| ! | TTTTTGTGTCTGTATTCGTG+TGG | + | chr1_1:69281596-69281615 | Msa0039570:five_prime_UTR | 35.0% |
| TGTATAAGAAGAGATTTGGG+TGG | + | chr1_1:69281650-69281669 | Msa0039570:five_prime_UTR | 35.0% | |
| AAGAACGTGACGAATCATAA+TGG | + | chr1_1:69281740-69281759 | Msa0039570:CDS | 35.0% | |
| !! | AATGTTGACTTCATGATAGG+TGG | - | chr1_1:69281900-69281919 | None:intergenic | 35.0% |
| ! | AAGGCATTTCTTGACATAGT+AGG | + | chr1_1:69282302-69282321 | Msa0039570:CDS | 35.0% |
| GATGAATCAGTTGCTTAAGT+TGG | + | chr1_1:69282644-69282663 | Msa0039570:CDS | 35.0% | |
| !! | AATCAGTTGCTTAAGTTGGA+TGG | + | chr1_1:69282648-69282667 | Msa0039570:CDS | 35.0% |
| TAAATTGCAGAGGAAAATGC+AGG | + | chr1_1:69282692-69282711 | Msa0039570:CDS | 35.0% | |
| AACATTTAGTCCCGGAAAAA+CGG | + | chr1_1:69282860-69282879 | Msa0039570:intron | 35.0% | |
| !! | ACTATGTAATCCCGTTTTTC+CGG | - | chr1_1:69282874-69282893 | None:intergenic | 35.0% |
| ATATAATATAGGACGACGGA+GGG | + | chr1_1:69283208-69283227 | Msa0039570:intron | 35.0% | |
| TTTGTTGAGGCTTCTTCTTT+GGG | - | chr1_1:69283479-69283498 | None:intergenic | 35.0% | |
| ! | TTTTGTTGAGGCTTCTTCTT+TGG | - | chr1_1:69283480-69283499 | None:intergenic | 35.0% |
| ! | AACTAGAAGGCATGTCTATT+GGG | + | chr1_1:69283526-69283545 | Msa0039570:CDS | 35.0% |
| TGTGATTGTTGCTCCAAATT+TGG | - | chr1_1:69283567-69283586 | None:intergenic | 35.0% | |
| TGTAGTAACTACAACTTCTG+AGG | - | chr1_1:69283655-69283674 | None:intergenic | 35.0% | |
| AGTTCATCCCAAGTTCAAAT+GGG | + | chr1_1:69283755-69283774 | Msa0039570:CDS | 35.0% | |
| AAGTGTTCCCATTTGAACTT+GGG | - | chr1_1:69283765-69283784 | None:intergenic | 35.0% | |
| ! | TGATTGTGTGGATGTGTTTT+GGG | + | chr1_1:69283807-69283826 | Msa0039570:three_prime_UTR | 35.0% |
| ! | TAGTCTGTCATTTACATCAC+CGG | + | chr1_1:69283907-69283926 | Msa0039570:three_prime_UTR | 35.0% |
| TTTACATCACCGGCAATAAA+TGG | + | chr1_1:69283917-69283936 | Msa0039570:three_prime_UTR | 35.0% | |
| TTACATCACCGGCAATAAAT+GGG | + | chr1_1:69283918-69283937 | Msa0039570:three_prime_UTR | 35.0% | |
| ATAAATGGGGTTGCTATGAT+AGG | + | chr1_1:69283932-69283951 | Msa0039570:three_prime_UTR | 35.0% | |
| TAAATGGGGTTGCTATGATA+GGG | + | chr1_1:69283933-69283952 | Msa0039570:three_prime_UTR | 35.0% | |
| ! | TGTTTTTCTCTCTGTTCTGG+AGG | - | chr1_1:69281151-69281170 | None:intergenic | 40.0% |
| TGGATTTATACGTGAGTAGG+AGG | - | chr1_1:69281293-69281312 | None:intergenic | 40.0% | |
| AAAAAAGAAAGATCGCCGGA+CGG | - | chr1_1:69281438-69281457 | None:intergenic | 40.0% | |
| CCACAAAAAAGAAAGATCGC+CGG | - | chr1_1:69281442-69281461 | None:intergenic | 40.0% | |
| TTAGAGGAATCAATGGCGTT+TGG | - | chr1_1:69281519-69281538 | None:intergenic | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | + | chr1_1:69281743-69281762 | Msa0039570:CDS | 40.0% | |
| ! | GACGAATCATAATGGAGGTT+CGG | + | chr1_1:69281748-69281767 | Msa0039570:CDS | 40.0% |
| TTAACTCTAATTGTCGGTGG+AGG | - | chr1_1:69281863-69281882 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | + | chr1_1:69281862-69281881 | Msa0039570:CDS | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | - | chr1_1:69281866-69281885 | None:intergenic | 40.0% | |
| AAAATGTTAACCGGTCCAAC+TGG | + | chr1_1:69282227-69282246 | Msa0039570:CDS | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | + | chr1_1:69282228-69282247 | Msa0039570:CDS | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | + | chr1_1:69282283-69282302 | Msa0039570:CDS | 40.0% | |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | + | chr1_1:69282337-69282356 | Msa0039570:CDS | 40.0% |
| ATCCTATTGCTCAAGAGAAG+AGG | + | chr1_1:69282360-69282379 | Msa0039570:CDS | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | - | chr1_1:69282365-69282384 | None:intergenic | 40.0% | |
| !! | GCTTAAGTTGGATGGTATAG+TGG | + | chr1_1:69282656-69282675 | Msa0039570:CDS | 40.0% |
| ATGGGGATGTTAAATTGCAG+AGG | + | chr1_1:69282682-69282701 | Msa0039570:CDS | 40.0% | |
| ACATTTAGTCCCGGAAAAAC+GGG | + | chr1_1:69282861-69282880 | Msa0039570:intron | 40.0% | |
| !! | CTATGTAATCCCGTTTTTCC+GGG | - | chr1_1:69282873-69282892 | None:intergenic | 40.0% |
| ! | GTCATTTAAAATGGGACGGA+GGG | - | chr1_1:69282988-69283007 | None:intergenic | 40.0% |
| CATATAATATAGGACGACGG+AGG | + | chr1_1:69283207-69283226 | Msa0039570:intron | 40.0% | |
| TCTAGTTGCTCATCAATTGG+AGG | - | chr1_1:69283513-69283532 | None:intergenic | 40.0% | |
| ! | CCTTCTAGTTGCTCATCAAT+TGG | - | chr1_1:69283516-69283535 | None:intergenic | 40.0% |
| CCAATTGATGAGCAACTAGA+AGG | + | chr1_1:69283513-69283532 | Msa0039570:CDS | 40.0% | |
| ! | CAACTAGAAGGCATGTCTAT+TGG | + | chr1_1:69283525-69283544 | Msa0039570:CDS | 40.0% |
| ! | ATTTGGAGCAACAATCACAG+AGG | + | chr1_1:69283568-69283587 | Msa0039570:CDS | 40.0% |
| CAATCACAGAGGATCTCAAA+CGG | + | chr1_1:69283579-69283598 | Msa0039570:CDS | 40.0% | |
| AATCACAGAGGATCTCAAAC+GGG | + | chr1_1:69283580-69283599 | Msa0039570:CDS | 40.0% | |
| ! | TCTGAGGTAGAATTCGTAGA+GGG | - | chr1_1:69283639-69283658 | None:intergenic | 40.0% |
| !! | TTCTGAGGTAGAATTCGTAG+AGG | - | chr1_1:69283640-69283659 | None:intergenic | 40.0% |
| GAAGTGACAGGAATTAATGG+TGG | - | chr1_1:69283702-69283721 | None:intergenic | 40.0% | |
| GCTGAAGTGACAGGAATTAA+TGG | - | chr1_1:69283705-69283724 | None:intergenic | 40.0% | |
| ! | ATTAGTGGATGAGCTTGATG+AGG | - | chr1_1:69283730-69283749 | None:intergenic | 40.0% |
| ! | GGGATGAACTGACTTATTAG+TGG | - | chr1_1:69283745-69283764 | None:intergenic | 40.0% |
| CAGTTCATCCCAAGTTCAAA+TGG | + | chr1_1:69283754-69283773 | Msa0039570:CDS | 40.0% | |
| ! | GAAGTGTTCCCATTTGAACT+TGG | - | chr1_1:69283766-69283785 | None:intergenic | 40.0% |
| GTGCAATGTATGTGATTGTG+TGG | + | chr1_1:69283795-69283814 | Msa0039570:three_prime_UTR | 40.0% | |
| ! | GTGATTGTGTGGATGTGTTT+TGG | + | chr1_1:69283806-69283825 | Msa0039570:three_prime_UTR | 40.0% |
| TACATCACCGGCAATAAATG+GGG | + | chr1_1:69283919-69283938 | Msa0039570:three_prime_UTR | 40.0% | |
| ATAGCAACCCCATTTATTGC+CGG | - | chr1_1:69283929-69283948 | None:intergenic | 40.0% | |
| ! | ACGTGAGTAGGAGGATTTTG+TGG | - | chr1_1:69281284-69281303 | None:intergenic | 45.0% |
| ! | TCCATAAACTTTTCCGGCAC+CGG | + | chr1_1:69281409-69281428 | Msa0039570:five_prime_UTR | 45.0% |
| !!! | CCGGCGATCTTTCTTTTTTG+TGG | + | chr1_1:69281439-69281458 | Msa0039570:five_prime_UTR | 45.0% |
| ! | TTTTGTGGTTCACGTTGGGT+TGG | + | chr1_1:69281480-69281499 | Msa0039570:intron | 45.0% |
| GTGTCTGTATTCGTGTGGAT+TGG | + | chr1_1:69281601-69281620 | Msa0039570:five_prime_UTR | 45.0% | |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | + | chr1_1:69282367-69282386 | Msa0039570:CDS | 45.0% |
| TTGGAAGTAGATAGGCTTGC+AGG | + | chr1_1:69282446-69282465 | Msa0039570:CDS | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | + | chr1_1:69282447-69282466 | Msa0039570:CDS | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | + | chr1_1:69282663-69282682 | Msa0039570:CDS | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | + | chr1_1:69282664-69282683 | Msa0039570:CDS | 45.0% | |
| TGTGTCCACTTTAGGTCACA+AGG | + | chr1_1:69282916-69282935 | Msa0039570:intron | 45.0% | |
| GTGTCCACTTTAGGTCACAA+GGG | + | chr1_1:69282917-69282936 | Msa0039570:intron | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | - | chr1_1:69282924-69282943 | None:intergenic | 45.0% | |
| ! | GGTCATTTAAAATGGGACGG+AGG | - | chr1_1:69282989-69283008 | None:intergenic | 45.0% |
| !! | AATAATAATAATAATAAAAG+GGG | - | chr1_1:69281957-69281976 | None:intergenic | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | - | chr1_1:69282268-69282287 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | + | chr1_1:69282268-69282287 | Msa0039570:CDS | 5.0% |
| !!! | TTTTTTTTTTTTTTATGATA+AGG | + | chr1_1:69282481-69282500 | Msa0039570:intron | 5.0% |
| AGGATGGCAGCATAGTTAGC+TGG | + | chr1_1:69281057-69281076 | Msa0039570:five_prime_UTR | 50.0% | |
| !! | CTCTGTTCTGGAGGAATCGA+TGG | - | chr1_1:69281142-69281161 | None:intergenic | 50.0% |
| ! | ACCGGTGCCGGAAAAGTTTA+TGG | - | chr1_1:69281413-69281432 | None:intergenic | 50.0% |
| CACTCCAAACCTCTAGGTTC+GGG | - | chr1_1:69281776-69281795 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | - | chr1_1:69281777-69281796 | None:intergenic | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | + | chr1_1:69281775-69281794 | Msa0039570:CDS | 50.0% |
| ATCTCCCACTCCAAACCTCT+AGG | - | chr1_1:69281782-69281801 | None:intergenic | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | + | chr1_1:69281823-69281842 | Msa0039570:CDS | 50.0% | |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | - | chr1_1:69281832-69281851 | None:intergenic | 50.0% |
| CTTAGACTCGGATCGAGACT+CGG | + | chr1_1:69281835-69281854 | Msa0039570:CDS | 50.0% | |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | - | chr1_1:69282245-69282264 | None:intergenic | 50.0% |
| GGATGGTATAGTGGCTGATG+GGG | + | chr1_1:69282665-69282684 | Msa0039570:CDS | 50.0% | |
| TGTGGAATGACAGACGTGAC+AGG | + | chr1_1:69283173-69283192 | Msa0039570:intron | 50.0% | |
| GTGGAATGACAGACGTGACA+GGG | + | chr1_1:69283174-69283193 | Msa0039570:intron | 50.0% | |
| GATGAGGATGCTGAAGTGAC+AGG | - | chr1_1:69283714-69283733 | None:intergenic | 50.0% | |
| AAAGATCGCCGGACGGTAAC+CGG | - | chr1_1:69281431-69281450 | None:intergenic | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | + | chr1_1:69281769-69281788 | Msa0039570:CDS | 55.0% | |
| CCGAACCTAGAGGTTTGGAG+TGG | + | chr1_1:69281774-69281793 | Msa0039570:CDS | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | + | chr1_1:69281788-69281807 | Msa0039570:CDS | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | + | chr1_1:69281799-69281818 | Msa0039570:CDS | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | - | chr1_1:69281809-69281828 | None:intergenic | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | - | chr1_1:69281837-69281856 | None:intergenic | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | - | chr1_1:69282240-69282259 | None:intergenic | 55.0% | |
| AGTAGATAGGCTTGCAGGGC+AGG | + | chr1_1:69282451-69282470 | Msa0039570:CDS | 55.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | + | chr1_1:69281764-69281783 | Msa0039570:CDS | 60.0% |
| GAGTGGGAGATGAGACCAGG+AGG | + | chr1_1:69281791-69281810 | Msa0039570:CDS | 60.0% | |
| !! | TTCCGGCACCGGTTACCGTC+CGG | + | chr1_1:69281420-69281439 | Msa0039570:five_prime_UTR | 65.0% |
| CGCCGGACGGTAACCGGTGC+CGG | - | chr1_1:69281425-69281444 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 69281056 | 69284100 | 69281056 | ID=Msa0039570;Name=Msa0039570 |
| chr1_1 | mRNA | 69281056 | 69284100 | 69281056 | ID=Msa0039570-mRNA-1;Parent=Msa0039570;Name=Msa0039570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=646|1|1|1|0.75|0.6|5|309|333 |
| chr1_1 | exon | 69281056 | 69281466 | 69281056 | ID=Msa0039570-mRNA-1:exon:22661;Parent=Msa0039570-mRNA-1 |
| chr1_1 | exon | 69281493 | 69281938 | 69281493 | ID=Msa0039570-mRNA-1:exon:22662;Parent=Msa0039570-mRNA-1 |
| chr1_1 | exon | 69282216 | 69282472 | 69282216 | ID=Msa0039570-mRNA-1:exon:22663;Parent=Msa0039570-mRNA-1 |
| chr1_1 | exon | 69282567 | 69282713 | 69282567 | ID=Msa0039570-mRNA-1:exon:22664;Parent=Msa0039570-mRNA-1 |
| chr1_1 | exon | 69283405 | 69284100 | 69283405 | ID=Msa0039570-mRNA-1:exon:22665;Parent=Msa0039570-mRNA-1 |
| chr1_1 | five_prime_UTR | 69281056 | 69281466 | 69281056 | ID=Msa0039570-mRNA-1:five_prime_utr;Parent=Msa0039570-mRNA-1 |
| chr1_1 | five_prime_UTR | 69281493 | 69281727 | 69281493 | ID=Msa0039570-mRNA-1:five_prime_utr;Parent=Msa0039570-mRNA-1 |
| chr1_1 | CDS | 69281728 | 69281938 | 69281728 | ID=Msa0039570-mRNA-1:cds;Parent=Msa0039570-mRNA-1 |
| chr1_1 | CDS | 69282216 | 69282472 | 69282216 | ID=Msa0039570-mRNA-1:cds;Parent=Msa0039570-mRNA-1 |
| chr1_1 | CDS | 69282567 | 69282713 | 69282567 | ID=Msa0039570-mRNA-1:cds;Parent=Msa0039570-mRNA-1 |
| chr1_1 | CDS | 69283405 | 69283791 | 69283405 | ID=Msa0039570-mRNA-1:cds;Parent=Msa0039570-mRNA-1 |
| chr1_1 | three_prime_UTR | 69283792 | 69284100 | 69283792 | ID=Msa0039570-mRNA-1:three_prime_utr;Parent=Msa0039570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
