Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046010 | sp|O64886|COX10_ARATH | 67.222 | 360 | 104 | 4 | 55 | 412 | 81 | 428 | 1.55e-171 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046010 | Msa0214300 | -0.809392 | 1.935628e-50 | -8.615850e-47 |
| Msa0046010 | Msa0223410 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0046010 | Msa0282460 | -0.829880 | 4.017835e-55 | -8.615850e-47 |
| Msa0046010 | Msa0306210 | 0.819536 | 1.103024e-52 | -8.615850e-47 |
| Msa0046010 | Msa0344690 | 0.825871 | 3.700114e-54 | -8.615850e-47 |
| Msa0046010 | Msa0437830 | 0.903027 | 5.299966e-79 | -8.615850e-47 |
| Msa0046010 | Msa0469940 | 0.826831 | 2.186032e-54 | -8.615850e-47 |
| Msa0046010 | Msa0622170 | 0.800977 | 1.118898e-48 | -8.615850e-47 |
| Msa0046010 | Msa0744170 | 0.826769 | 2.261497e-54 | -8.615850e-47 |
| Msa0046010 | Msa0827250 | -0.801026 | 1.093154e-48 | -8.615850e-47 |
| Msa0046010 | Msa0865510 | 0.802568 | 5.275580e-49 | -8.615850e-47 |
| Msa0046010 | Msa0927090 | -0.819438 | 1.161389e-52 | -8.615850e-47 |
| Msa0046010 | Msa0947080 | -0.802837 | 4.641489e-49 | -8.615850e-47 |
| Msa0046010 | Msa1023950 | -0.800378 | 1.482422e-48 | -8.615850e-47 |
| Msa0046010 | Msa1035310 | -0.826964 | 2.032235e-54 | -8.615850e-47 |
| Msa0046010 | Msa1070010 | -0.801166 | 1.023564e-48 | -8.615850e-47 |
| Msa0046010 | Msa1076700 | -0.800615 | 1.326098e-48 | -8.615850e-47 |
| Msa0046010 | Msa1116440 | -0.813273 | 2.782241e-51 | -8.615850e-47 |
| Msa0046010 | Msa1124540 | 0.806001 | 1.016846e-49 | -8.615850e-47 |
| Msa0046010 | Msa1144720 | 0.818549 | 1.850014e-52 | -8.615850e-47 |
| Msa0046010 | Msa1282580 | 0.808206 | 3.470501e-50 | -8.615850e-47 |
| Msa0046010 | Msa1304890 | 0.810773 | 9.757158e-51 | -8.615850e-47 |
| Msa0046010 | Msa1373430 | 0.897898 | 8.988704e-77 | -8.615850e-47 |
| Msa0046010 | Msa1457040 | -0.804164 | 2.463799e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046010 | MtrunA17_Chr1g0213261 | 95.444 | 417 | 7 | 2 | 1 | 415 | 1 | 407 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046010 | AT2G44520.1 | 67.222 | 360 | 104 | 4 | 55 | 412 | 81 | 428 | 1.58e-172 | 489 |
Find 142 sgRNAs with CRISPR-Local
Find 470 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGGCTGCTTTGTATTTC+TGG | 0.083161 | 1_1:-78030762 | Msa0046010:CDS |
| ACGATTCTTCATACTGTATT+TGG | 0.084333 | 1_1:+78034665 | None:intergenic |
| TCTCAAAGCAAAATCCTTAT+TGG | 0.138649 | 1_1:+78029191 | None:intergenic |
| CGGTGCTATTCCACCACTTT+TGG | 0.152134 | 1_1:-78032962 | Msa0046010:CDS |
| CTTGCCTGCCTTTGATCTTT+TGG | 0.182188 | 1_1:+78029404 | None:intergenic |
| GGTGCCAATCATCGCAATTT+TGG | 0.200697 | 1_1:+78034536 | None:intergenic |
| TTTGGGCTGCCCAGTTTATT+TGG | 0.206477 | 1_1:+78034683 | None:intergenic |
| TTGCTGGTGGTTGCAACATC+TGG | 0.235101 | 1_1:-78034138 | Msa0046010:CDS |
| TCTAATCCCTTTGGGTTTCT+TGG | 0.239936 | 1_1:-78030232 | Msa0046010:CDS |
| TTCAGATGGGCTGCAGCTTC+TGG | 0.254382 | 1_1:-78030811 | Msa0046010:intron |
| CTGGGCATCCTCTGTTGGTT+TGG | 0.287378 | 1_1:-78033258 | Msa0046010:CDS |
| TTGACTCGTTCTCCTCATTA+TGG | 0.287688 | 1_1:+78033325 | None:intergenic |
| TACTCTCTTGCTGATCCATC+TGG | 0.304688 | 1_1:-78030294 | Msa0046010:CDS |
| CGATTCTTCATACTGTATTT+GGG | 0.308623 | 1_1:+78034666 | None:intergenic |
| CTCTATATATCTAATCCCTT+TGG | 0.314375 | 1_1:-78030241 | Msa0046010:CDS |
| CAATTGTCATCCAAATAAAC+TGG | 0.316665 | 1_1:-78034693 | Msa0046010:five_prime_UTR |
| AAAACTAAATTATAGTTTGC+TGG | 0.324778 | 1_1:-78034154 | Msa0046010:intron |
| CCACCATGTTTAAGAGGAAT+TGG | 0.325402 | 1_1:-78034515 | Msa0046010:CDS |
| ATGGCCTTTAAAAGCCAATA+AGG | 0.333255 | 1_1:-78029205 | Msa0046010:three_prime_UTR |
| TCTATATATCTAATCCCTTT+GGG | 0.339285 | 1_1:-78030240 | Msa0046010:CDS |
| CATGCTTTCCTATACTTGCT+TGG | 0.339997 | 1_1:-78034073 | Msa0046010:CDS |
| AACACGATGATCACTTCTAT+TGG | 0.340614 | 1_1:+78034632 | None:intergenic |
| ACTAAATAGTTTGATTCTTC+CGG | 0.355070 | 1_1:-78030779 | Msa0046010:CDS |
| ACTGGATTTGTGTTGGGGAG+TGG | 0.363487 | 1_1:-78034114 | Msa0046010:CDS |
| GCATCCTCTGTTGGTTTGGC+TGG | 0.366724 | 1_1:-78033254 | Msa0046010:CDS |
| TCACTACCTGCGTTGCTAGT+AGG | 0.367115 | 1_1:+78033225 | None:intergenic |
| CTTCTGCTTTGGTCTGAAGC+TGG | 0.372465 | 1_1:-78034573 | Msa0046010:five_prime_UTR |
| AGGAGGAGAGAGATGAAGAT+TGG | 0.373127 | 1_1:+78034392 | None:intergenic |
| ACTCACCGAACGACAGTTAT+CGG | 0.375109 | 1_1:+78034747 | None:intergenic |
| ATGCTTTCCTATACTTGCTT+GGG | 0.376660 | 1_1:-78034072 | Msa0046010:CDS |
| ATCTGCCAGCACTTTAAATC+AGG | 0.389440 | 1_1:-78034031 | Msa0046010:intron |
| GGTTCACCTGAGACGAGCTT+TGG | 0.397137 | 1_1:+78034299 | None:intergenic |
| AATTGACGAGTCTGGAATAC+AGG | 0.401617 | 1_1:+78034481 | None:intergenic |
| AACCCCAAAATTGCGATGAT+TGG | 0.401857 | 1_1:-78034540 | Msa0046010:exon |
| TCTGGGACTGGATTTGTGTT+GGG | 0.408286 | 1_1:-78034120 | Msa0046010:CDS |
| GATGAGATCGGTGGACTTAG+AGG | 0.408833 | 1_1:+78034362 | None:intergenic |
| TGCTGGTGGTTGCAACATCT+GGG | 0.425974 | 1_1:-78034137 | Msa0046010:CDS |
| CAGTACCTCATGCAGTTGGC+TGG | 0.427514 | 1_1:-78033277 | Msa0046010:CDS |
| CACTACCTGCGTTGCTAGTA+GGG | 0.429355 | 1_1:+78033226 | None:intergenic |
| CATTGTGTAATATTTATCAT+TGG | 0.433851 | 1_1:-78029308 | Msa0046010:exon |
| AACTCTCCAAAGCTCGTCTC+AGG | 0.438797 | 1_1:-78034305 | Msa0046010:intron |
| CGAAGAGGAATTGACGAGTC+TGG | 0.444141 | 1_1:+78034473 | None:intergenic |
| GTGGACTTAGAGGCGGAAAC+AGG | 0.444880 | 1_1:+78034372 | None:intergenic |
| CATGGTACCCAAGCAAGTAT+AGG | 0.445696 | 1_1:+78034065 | None:intergenic |
| ACACGATGATCACTTCTATT+GGG | 0.449731 | 1_1:+78034633 | None:intergenic |
| TGGGCTTGCTGCTTCCAACC+TGG | 0.449902 | 1_1:-78033055 | Msa0046010:CDS |
| ACGGGATGAATCTGCTTCAA+TGG | 0.463326 | 1_1:+78033009 | None:intergenic |
| ATCTGGGACTGGATTTGTGT+TGG | 0.470508 | 1_1:-78034121 | Msa0046010:CDS |
| TTGGCACCACCATGTTTAAG+AGG | 0.472232 | 1_1:-78034521 | Msa0046010:CDS |
| GAGACGAGCTTTGGAGAGTT+CGG | 0.473314 | 1_1:+78034308 | None:intergenic |
| GTTGGCTGGGCATCCTCTGT+TGG | 0.479779 | 1_1:-78033263 | Msa0046010:CDS |
| AGATTCATCCCGTAAATACA+TGG | 0.482928 | 1_1:-78032999 | Msa0046010:CDS |
| CAGACTAATATGTTAGCTGC+TGG | 0.486361 | 1_1:-78033075 | Msa0046010:CDS |
| AGAGAGATGAAGATTGGAAG+AGG | 0.487459 | 1_1:+78034398 | None:intergenic |
| CGTTGACTTCTAAGAAGTGT+TGG | 0.489983 | 1_1:+78029491 | None:intergenic |
| TGAAGAAGAAGAAGAGAAGG+TGG | 0.492582 | 1_1:+78034422 | None:intergenic |
| CTGGGACTGGATTTGTGTTG+GGG | 0.498026 | 1_1:-78034119 | Msa0046010:CDS |
| TACTTGCTTGGGTACCATGA+TGG | 0.499620 | 1_1:-78034061 | Msa0046010:CDS |
| GTGGTTGCAACATCTGGGAC+TGG | 0.501533 | 1_1:-78034132 | Msa0046010:CDS |
| GAGAGATGAAGATTGGAAGA+GGG | 0.506932 | 1_1:+78034399 | None:intergenic |
| CAAAAGATCAAAGGCAGGCA+AGG | 0.508343 | 1_1:-78029403 | Msa0046010:CDS |
| TCTGAAGTTTCCACAGAGGA+TGG | 0.508508 | 1_1:+78029448 | None:intergenic |
| GGGTGAAGAAGAAGAAGAGA+AGG | 0.509150 | 1_1:+78034419 | None:intergenic |
| TGAAGTTTCCACAGAGGATG+GGG | 0.513270 | 1_1:+78029450 | None:intergenic |
| ATCCCGTAAATACATGGGTG+GGG | 0.515022 | 1_1:-78032993 | Msa0046010:CDS |
| GGATTTGTGTTGGGGAGTGG+TGG | 0.515506 | 1_1:-78034111 | Msa0046010:CDS |
| ATGATCACTTCTATTGGGCT+CGG | 0.522941 | 1_1:+78034638 | None:intergenic |
| AACTGTCGTTCGGTGAGTGT+CGG | 0.524200 | 1_1:-78034742 | Msa0046010:five_prime_UTR |
| AGTAACCTGATTTAAAGTGC+TGG | 0.526743 | 1_1:+78034026 | None:intergenic |
| CTGAAGTTTCCACAGAGGAT+GGG | 0.528347 | 1_1:+78029449 | None:intergenic |
| GAAGTTGTGAAGAGACGAAG+AGG | 0.532052 | 1_1:+78034458 | None:intergenic |
| TGGGCGGAAAACAGCATTGG+TGG | 0.535298 | 1_1:-78030274 | Msa0046010:CDS |
| AGACTAATATGTTAGCTGCT+GGG | 0.538050 | 1_1:-78033074 | Msa0046010:CDS |
| TCCGAGCTCTTTCCTTAGTG+CGG | 0.538953 | 1_1:+78029587 | None:intergenic |
| CATCCCGTAAATACATGGGT+GGG | 0.539017 | 1_1:-78032994 | Msa0046010:CDS |
| TGCCAGAAATACAAAGCAGC+CGG | 0.540109 | 1_1:+78030760 | None:intergenic |
| CACAATTACCCCAAAAGTGG+TGG | 0.543366 | 1_1:+78032952 | None:intergenic |
| GTACACAATTACCCCAAAAG+TGG | 0.545961 | 1_1:+78032949 | None:intergenic |
| AAACAGCATTGGTGGCTATG+AGG | 0.548674 | 1_1:-78030266 | Msa0046010:CDS |
| ACTCTCTTGCTGATCCATCT+GGG | 0.554804 | 1_1:-78030293 | Msa0046010:CDS |
| TATTACACAATGTCGTATGA+AGG | 0.554978 | 1_1:+78029319 | None:intergenic |
| GCAATGGAAGCATATGCTAC+AGG | 0.556784 | 1_1:+78029364 | None:intergenic |
| ATCTGGGCGGAAAACAGCAT+TGG | 0.557115 | 1_1:-78030277 | Msa0046010:CDS |
| TCAGAGATGTATGACAAGAA+TGG | 0.558162 | 1_1:-78029430 | Msa0046010:CDS |
| AGTCAAAGGCCACTGCCCTC+AGG | 0.558809 | 1_1:-78033308 | Msa0046010:CDS |
| TCCCGTAAATACATGGGTGG+GGG | 0.566400 | 1_1:-78032992 | Msa0046010:CDS |
| AGTACCTCATGCAGTTGGCT+GGG | 0.566631 | 1_1:-78033276 | Msa0046010:CDS |
| AACGGGGAGATAAAGAAGAC+TGG | 0.572845 | 1_1:+78029552 | None:intergenic |
| TTCTTAGAAGTCAACGCAGA+GGG | 0.574626 | 1_1:-78029484 | Msa0046010:CDS |
| TCTAACCGATAACTGTCGTT+CGG | 0.576035 | 1_1:-78034752 | Msa0046010:five_prime_UTR |
| AATGGTAACCAAAAGATCAA+AGG | 0.578992 | 1_1:-78029412 | Msa0046010:CDS |
| GGCAGATGCAGCAACCATCA+TGG | 0.579018 | 1_1:+78034047 | None:intergenic |
| CGTGAGGACTATGCTGCGGG+AGG | 0.580386 | 1_1:-78030703 | Msa0046010:CDS |
| AAAAGATCAAAGGCAGGCAA+GGG | 0.583612 | 1_1:-78029402 | Msa0046010:CDS |
| CAAGCAAGTATAGGAAAGCA+TGG | 0.584361 | 1_1:+78034074 | None:intergenic |
| ACCGCACTAAGGAAAGAGCT+CGG | 0.586450 | 1_1:-78029588 | Msa0046010:CDS |
| TCAAGAATGATGCCATAATG+AGG | 0.587815 | 1_1:-78033337 | Msa0046010:CDS |
| TAATGAGGAGAACGAGTCAA+AGG | 0.594303 | 1_1:-78033322 | Msa0046010:CDS |
| TATTGCAAGTGTAAGTGCAG+TGG | 0.601469 | 1_1:+78029639 | None:intergenic |
| TGTCGTGAGGACTATGCTGC+GGG | 0.601768 | 1_1:-78030706 | Msa0046010:CDS |
| ACTAAATTATAGTTTGCTGG+TGG | 0.602277 | 1_1:-78034151 | Msa0046010:intron |
| GTTATGCGTCCTGAGGGCAG+TGG | 0.605804 | 1_1:+78033299 | None:intergenic |
| CATATGCCAAGAAACCCAAA+GGG | 0.606346 | 1_1:+78030226 | None:intergenic |
| AGGTACTGTTATGCGTCCTG+AGG | 0.608440 | 1_1:+78033292 | None:intergenic |
| AAATGAATACAGAACCAGGT+TGG | 0.610247 | 1_1:+78033041 | None:intergenic |
| GACTTAGAGGCGGAAACAGG+AGG | 0.611061 | 1_1:+78034375 | None:intergenic |
| TCATCCCGTAAATACATGGG+TGG | 0.614519 | 1_1:-78032995 | Msa0046010:CDS |
| GTGAGGACTATGCTGCGGGA+GGG | 0.614597 | 1_1:-78030702 | Msa0046010:intron |
| TCATATGCCAAGAAACCCAA+AGG | 0.617515 | 1_1:+78030225 | None:intergenic |
| CCAATTCCTCTTAAACATGG+TGG | 0.621027 | 1_1:+78034515 | None:intergenic |
| ACAATGTCGTATGAAGGAGC+AGG | 0.622299 | 1_1:+78029325 | None:intergenic |
| TAAGCAAGGGCCATAAAATG+TGG | 0.623266 | 1_1:+78030733 | None:intergenic |
| GTAACCAAAAGATCAAAGGC+AGG | 0.624561 | 1_1:-78029408 | Msa0046010:CDS |
| ATAACAGTACCTCATGCAGT+TGG | 0.628319 | 1_1:-78033281 | Msa0046010:CDS |
| TTTGAAATCCCCATCCTCTG+TGG | 0.629315 | 1_1:-78029458 | Msa0046010:CDS |
| GGTACTGTTATGCGTCCTGA+GGG | 0.629374 | 1_1:+78033293 | None:intergenic |
| ATTCCAATTCCTCTTAAACA+TGG | 0.631936 | 1_1:+78034512 | None:intergenic |
| GTTTCCATAGTGACGAGCGA+GGG | 0.633311 | 1_1:+78034338 | None:intergenic |
| TTTCCATAGTGACGAGCGAG+GGG | 0.635392 | 1_1:+78034339 | None:intergenic |
| GCTTCTAATTCACCGCCGCA+CGG | 0.637444 | 1_1:-78029518 | Msa0046010:CDS |
| CCTCACGACACATATAAGCA+AGG | 0.639408 | 1_1:+78030719 | None:intergenic |
| ATGGAAGCATATGCTACAGG+TGG | 0.647561 | 1_1:+78029367 | None:intergenic |
| CTCACGACACATATAAGCAA+GGG | 0.650006 | 1_1:+78030720 | None:intergenic |
| GATGCCCAGCCAACTGCATG+AGG | 0.652113 | 1_1:+78033272 | None:intergenic |
| AGTTTCCATAGTGACGAGCG+AGG | 0.655291 | 1_1:+78034337 | None:intergenic |
| AGTGTCGGAGAGCAATCACT+AGG | 0.661547 | 1_1:-78034727 | Msa0046010:five_prime_UTR |
| GATTCATCCCGTAAATACAT+GGG | 0.664572 | 1_1:-78032998 | Msa0046010:CDS |
| AATTGTCATCCAAATAAACT+GGG | 0.664969 | 1_1:-78034692 | Msa0046010:five_prime_UTR |
| TGTGCCAGCCAAACCAACAG+AGG | 0.665249 | 1_1:+78033250 | None:intergenic |
| CACAGCCCTACTAGCAACGC+AGG | 0.666638 | 1_1:-78033231 | Msa0046010:intron |
| ATACAAATGAATACAGAACC+AGG | 0.669177 | 1_1:+78033037 | None:intergenic |
| ATTGACGAGTCTGGAATACA+GGG | 0.669841 | 1_1:+78034482 | None:intergenic |
| GAGATCGGTGGACTTAGAGG+CGG | 0.679183 | 1_1:+78034365 | None:intergenic |
| CCTTGCTTATATGTGTCGTG+AGG | 0.692006 | 1_1:-78030719 | Msa0046010:CDS |
| TCTATAAAACGAAAACGCTG+CGG | 0.692808 | 1_1:+78029612 | None:intergenic |
| AGTGTTGGTTATCCGTGCGG+CGG | 0.696361 | 1_1:+78029506 | None:intergenic |
| TTCCATAGTGACGAGCGAGG+GGG | 0.714103 | 1_1:+78034340 | None:intergenic |
| GTGTCGTGAGGACTATGCTG+CGG | 0.715426 | 1_1:-78030707 | Msa0046010:CDS |
| AGAAGTGTTGGTTATCCGTG+CGG | 0.717760 | 1_1:+78029503 | None:intergenic |
| CTCTTGCTGATCCATCTGGG+CGG | 0.721838 | 1_1:-78030290 | Msa0046010:CDS |
| CTTCTTAGAAGTCAACGCAG+AGG | 0.741087 | 1_1:-78029485 | Msa0046010:CDS |
| CATCTCTGAAGTTTCCACAG+AGG | 0.745544 | 1_1:+78029444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAAAAGTGAA+AGG | + | chr1_1:78029616-78029635 | None:intergenic | 10.0% |
| !!! | ATTTTAATATATAGCTATTT+TGG | + | chr1_1:78032275-78032294 | None:intergenic | 10.0% |
| !!! | CAAATTATTTTGAAATTATA+TGG | - | chr1_1:78033259-78033278 | Msa0046010:CDS | 10.0% |
| !! | ATTAATATGATAGAACATTA+TGG | - | chr1_1:78030098-78030117 | Msa0046010:intron | 15.0% |
| !!! | AAATGTTGATAAAAAATCTA+AGG | + | chr1_1:78030484-78030503 | None:intergenic | 15.0% |
| !! | ACATAATTAGATCTATTAAA+TGG | - | chr1_1:78030506-78030525 | Msa0046010:intron | 15.0% |
| !!! | TTATTTTAGTATTAGACAAT+TGG | - | chr1_1:78032730-78032749 | Msa0046010:intron | 15.0% |
| !!! | GCATTTTTTTTTTTTTTTGA+GGG | + | chr1_1:78033438-78033457 | None:intergenic | 15.0% |
| !!! | TGCATTTTTTTTTTTTTTTG+AGG | + | chr1_1:78033439-78033458 | None:intergenic | 15.0% |
| !! | TAAATGAATGAAAAATATTG+AGG | + | chr1_1:78033506-78033525 | None:intergenic | 15.0% |
| !!! | TTTTCTTATAATGTTTTGTT+TGG | - | chr1_1:78034628-78034647 | Msa0046010:five_prime_UTR | 15.0% |
| !!! | ATTGTAATTGTTTTTTCAAA+TGG | - | chr1_1:78034667-78034686 | Msa0046010:five_prime_UTR | 15.0% |
| !!! | AAAACTAAATTATAGTTTGC+TGG | - | chr1_1:78029737-78029756 | Msa0046010:intron | 20.0% |
| !!! | TTAAATCAGGTTACTTTTTT+AGG | - | chr1_1:78029873-78029892 | Msa0046010:intron | 20.0% |
| !!! | GTTTTACTTGTATATGAATT+AGG | - | chr1_1:78030180-78030199 | Msa0046010:intron | 20.0% |
| !!! | TTTAGTTTTTAGATATCACA+TGG | + | chr1_1:78031035-78031054 | None:intergenic | 20.0% |
| !! | TGGAACCTTATAATAATAAT+AGG | - | chr1_1:78031110-78031129 | Msa0046010:intron | 20.0% |
| !!! | GAAATTAACGAAAAAGTATA+TGG | - | chr1_1:78031227-78031246 | Msa0046010:intron | 20.0% |
| !!! | CTTTTGATTCTCTTTAATTT+GGG | + | chr1_1:78031296-78031315 | None:intergenic | 20.0% |
| !!! | TCTTTTGATTCTCTTTAATT+TGG | + | chr1_1:78031297-78031316 | None:intergenic | 20.0% |
| !! | GAATTCAAAATTGTTCAATT+AGG | + | chr1_1:78031434-78031453 | None:intergenic | 20.0% |
| !! | TTTGTATAAATAAGGTCATT+TGG | + | chr1_1:78031471-78031490 | None:intergenic | 20.0% |
| !!! | ACCTTATTTATACAAACAAA+GGG | - | chr1_1:78031475-78031494 | Msa0046010:intron | 20.0% |
| !! | CAAATATAAAACTTTGTATG+TGG | + | chr1_1:78031771-78031790 | None:intergenic | 20.0% |
| !!! | TTAATATATAGCTATTTTGG+AGG | + | chr1_1:78032272-78032291 | None:intergenic | 20.0% |
| !! | AGATTATAAGCATGAAAAAT+TGG | + | chr1_1:78032632-78032651 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTCATTTAGTGA+TGG | - | chr1_1:78033510-78033529 | Msa0046010:intron | 20.0% |
| !!! | ATTAAAACATTTCTAGTAGA+AGG | + | chr1_1:78033709-78033728 | None:intergenic | 20.0% |
| !! | CATTGTGTAATATTTATCAT+TGG | - | chr1_1:78034583-78034602 | Msa0046010:five_prime_UTR | 20.0% |
| !!! | ATTTTGTACAAATATGCTAA+TGG | - | chr1_1:78034760-78034779 | Msa0046010:five_prime_UTR | 20.0% |
| ! | AATTGTCATCCAAATAAACT+GGG | - | chr1_1:78029199-78029218 | Msa0046010:three_prime_UTR | 25.0% |
| !!! | GTTACTTTTTTAGGACAATA+TGG | - | chr1_1:78029882-78029901 | Msa0046010:intron | 25.0% |
| ! | AATATGATAGAACATTATGG+TGG | - | chr1_1:78030101-78030120 | Msa0046010:intron | 25.0% |
| ! | ATATGAATTAGGAAAGATAG+AGG | - | chr1_1:78030191-78030210 | Msa0046010:intron | 25.0% |
| ! | ATAAAAGAGACGAAATTGAT+TGG | - | chr1_1:78030313-78030332 | Msa0046010:intron | 25.0% |
| !!! | TAAGGTTTTGTTTGAGAATT+TGG | + | chr1_1:78030466-78030485 | None:intergenic | 25.0% |
| !! | TAAATGGTTGTGTCTATTTT+AGG | - | chr1_1:78030522-78030541 | Msa0046010:intron | 25.0% |
| !! | AGAAAAACATTTGAGGTTTA+AGG | + | chr1_1:78030732-78030751 | None:intergenic | 25.0% |
| !! | TTTTGTGAGAAAAACATTTG+AGG | + | chr1_1:78030739-78030758 | None:intergenic | 25.0% |
| ! | AGGGACCTATTATTATTATA+AGG | + | chr1_1:78031118-78031137 | None:intergenic | 25.0% |
| ! | AAACTACAGTAACAAAACAA+GGG | + | chr1_1:78031184-78031203 | None:intergenic | 25.0% |
| !! | TCGTTTTCTATACATGTAAA+AGG | - | chr1_1:78031205-78031224 | Msa0046010:intron | 25.0% |
| ! | GTATAGTTAGTGATATTGAT+AGG | - | chr1_1:78031268-78031287 | Msa0046010:intron | 25.0% |
| !! | GACCTTATTTATACAAACAA+AGG | - | chr1_1:78031474-78031493 | Msa0046010:intron | 25.0% |
| ! | TCCTTTCTTTCAAATTCAAA+GGG | - | chr1_1:78031795-78031814 | Msa0046010:intron | 25.0% |
| !!! | TGTTGTGGTTTTTTTATTCT+TGG | + | chr1_1:78032237-78032256 | None:intergenic | 25.0% |
| !!! | TCATTTATATTTTGACTGCT+TGG | - | chr1_1:78032560-78032579 | Msa0046010:intron | 25.0% |
| ! | ACTGTAGATGAATAACTTAA+TGG | + | chr1_1:78032941-78032960 | None:intergenic | 25.0% |
| ! | TGAAAATAACCCACAAAAAA+AGG | + | chr1_1:78033064-78033083 | None:intergenic | 25.0% |
| ! | ACTAAATAGTTTGATTCTTC+CGG | - | chr1_1:78033112-78033131 | Msa0046010:intron | 25.0% |
| ! | GTTTATATAGTGATGAAGTT+TGG | - | chr1_1:78033229-78033248 | Msa0046010:intron | 25.0% |
| !! | CCAAAAAAATGTTATTTGTG+CGG | + | chr1_1:78033372-78033391 | None:intergenic | 25.0% |
| !!! | CGCACAAATAACATTTTTTT+GGG | - | chr1_1:78033370-78033389 | Msa0046010:intron | 25.0% |
| ! | AAAAAAAATGCATGTTACAC+TGG | - | chr1_1:78033447-78033466 | Msa0046010:intron | 25.0% |
| ! | TCTATATATCTAATCCCTTT+GGG | - | chr1_1:78033651-78033670 | Msa0046010:intron | 25.0% |
| ! | CATAGGCTATAATCTTAAAT+AGG | + | chr1_1:78033830-78033849 | None:intergenic | 25.0% |
| ! | TACAGCAACATAAATTTCAT+AGG | + | chr1_1:78033847-78033866 | None:intergenic | 25.0% |
| ! | ATGAAATTTATGTTGCTGTA+TGG | - | chr1_1:78033847-78033866 | Msa0046010:intron | 25.0% |
| ! | AAAAGGCTTGAAATTCAAAA+AGG | + | chr1_1:78033939-78033958 | None:intergenic | 25.0% |
| !!! | AAATCCTTATTGGCTTTTAA+AGG | + | chr1_1:78034693-78034712 | None:intergenic | 25.0% |
| CAATTGTCATCCAAATAAAC+TGG | - | chr1_1:78029198-78029217 | Msa0046010:three_prime_UTR | 30.0% | |
| CGATTCTTCATACTGTATTT+GGG | + | chr1_1:78029228-78029247 | None:intergenic | 30.0% | |
| ACGATTCTTCATACTGTATT+TGG | + | chr1_1:78029229-78029248 | None:intergenic | 30.0% | |
| ATTCCAATTCCTCTTAAACA+TGG | + | chr1_1:78029382-78029401 | None:intergenic | 30.0% | |
| !! | ACTAAATTATAGTTTGCTGG+TGG | - | chr1_1:78029740-78029759 | Msa0046010:intron | 30.0% |
| ACGATGGATAAGTATATAGT+AGG | + | chr1_1:78029914-78029933 | None:intergenic | 30.0% | |
| GTTGGTATTAAAACATACGA+TGG | + | chr1_1:78029930-78029949 | None:intergenic | 30.0% | |
| CTGTACGAGGAAATAAAAAA+AGG | - | chr1_1:78030023-78030042 | Msa0046010:intron | 30.0% | |
| AATTAGGAAAGATAGAGGAA+TGG | - | chr1_1:78030196-78030215 | Msa0046010:intron | 30.0% | |
| !! | CATGGTTTATTTTCCTTCAT+TGG | + | chr1_1:78030399-78030418 | None:intergenic | 30.0% |
| CAATGAAGGAAAATAAACCA+TGG | - | chr1_1:78030397-78030416 | Msa0046010:intron | 30.0% | |
| AGGGATAAGAAAAAAAGGAA+GGG | + | chr1_1:78030443-78030462 | None:intergenic | 30.0% | |
| TTTGGAGGGATAAGAAAAAA+AGG | + | chr1_1:78030448-78030467 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTGAGAATTTGGA+GGG | + | chr1_1:78030462-78030481 | None:intergenic | 30.0% |
| !! | AACATTGTAGCTTTATGACA+AGG | - | chr1_1:78030787-78030806 | Msa0046010:CDS | 30.0% |
| ATACAAATGAATACAGAACC+AGG | + | chr1_1:78030857-78030876 | None:intergenic | 30.0% | |
| ATGCATAAGAAAGAGACAAA+AGG | + | chr1_1:78030974-78030993 | None:intergenic | 30.0% | |
| !! | GCTTTGATGAACTTTTGAAA+GGG | + | chr1_1:78031137-78031156 | None:intergenic | 30.0% |
| ! | TGCTTTGATGAACTTTTGAA+AGG | + | chr1_1:78031138-78031157 | None:intergenic | 30.0% |
| GAAACTACAGTAACAAAACA+AGG | + | chr1_1:78031185-78031204 | None:intergenic | 30.0% | |
| !!! | TTAGGAACCTTATTGGTTTT+GGG | + | chr1_1:78031416-78031435 | None:intergenic | 30.0% |
| !!! | ATTAGGAACCTTATTGGTTT+TGG | + | chr1_1:78031417-78031436 | None:intergenic | 30.0% |
| TGTTCAATTAGGAACCTTAT+TGG | + | chr1_1:78031423-78031442 | None:intergenic | 30.0% | |
| ! | GCCCTTTGTTTGTATAAATA+AGG | + | chr1_1:78031479-78031498 | None:intergenic | 30.0% |
| !! | ATGCAGTATTTGTGTTGATT+AGG | + | chr1_1:78031534-78031553 | None:intergenic | 30.0% |
| ATAAAACTTTGTATGTGGCT+TGG | + | chr1_1:78031766-78031785 | None:intergenic | 30.0% | |
| CTCCTTTCTTTCAAATTCAA+AGG | - | chr1_1:78031794-78031813 | Msa0046010:intron | 30.0% | |
| TCCCTTTGAATTTGAAAGAA+AGG | + | chr1_1:78031799-78031818 | None:intergenic | 30.0% | |
| TCTTTCAAATTCAAAGGGAA+TGG | - | chr1_1:78031800-78031819 | Msa0046010:intron | 30.0% | |
| AAAGGTTGTTGATGCTAAAA+TGG | + | chr1_1:78031987-78032006 | None:intergenic | 30.0% | |
| GTCAGTATCATCTTATGTTA+TGG | - | chr1_1:78032475-78032494 | Msa0046010:intron | 30.0% | |
| ATCTTATACATTTCTTCCTG+TGG | - | chr1_1:78032596-78032615 | Msa0046010:intron | 30.0% | |
| CAGCATATAGACAATTAATC+TGG | + | chr1_1:78032803-78032822 | None:intergenic | 30.0% | |
| AATTGTCTATATGCTGAAAG+TGG | - | chr1_1:78032807-78032826 | Msa0046010:intron | 30.0% | |
| AAATCCAATAGAATGAGAGA+AGG | + | chr1_1:78032876-78032895 | None:intergenic | 30.0% | |
| TTCTCTCATTCTATTGGATT+TGG | - | chr1_1:78032875-78032894 | Msa0046010:intron | 30.0% | |
| !! | TTTTGTGGGTTATTTTCAGA+TGG | - | chr1_1:78033066-78033085 | Msa0046010:CDS | 30.0% |
| !! | TTTGTGGGTTATTTTCAGAT+GGG | - | chr1_1:78033067-78033086 | Msa0046010:CDS | 30.0% |
| TTTCCAGATATAGAAACCTA+CGG | - | chr1_1:78033316-78033335 | Msa0046010:CDS | 30.0% | |
| ATTCAGTTAAACTAAACCGT+AGG | + | chr1_1:78033335-78033354 | None:intergenic | 30.0% | |
| !!! | CCGCACAAATAACATTTTTT+TGG | - | chr1_1:78033369-78033388 | Msa0046010:intron | 30.0% |
| CTCTATATATCTAATCCCTT+TGG | - | chr1_1:78033650-78033669 | Msa0046010:intron | 30.0% | |
| !! | TATACTCAAAACTCTGAAAC+AGG | - | chr1_1:78034063-78034082 | Msa0046010:CDS | 30.0% |
| !! | ATACTCAAAACTCTGAAACA+GGG | - | chr1_1:78034064-78034083 | Msa0046010:CDS | 30.0% |
| !!! | ATGTTTTGACCACAATGTTT+TGG | - | chr1_1:78034168-78034187 | Msa0046010:intron | 30.0% |
| AATGGTAACCAAAAGATCAA+AGG | - | chr1_1:78034479-78034498 | Msa0046010:CDS | 30.0% | |
| TATTACACAATGTCGTATGA+AGG | + | chr1_1:78034575-78034594 | None:intergenic | 30.0% | |
| TCTCAAAGCAAAATCCTTAT+TGG | + | chr1_1:78034703-78034722 | None:intergenic | 30.0% | |
| ACACGATGATCACTTCTATT+GGG | + | chr1_1:78029261-78029280 | None:intergenic | 35.0% | |
| AACACGATGATCACTTCTAT+TGG | + | chr1_1:78029262-78029281 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCTTCTGCTT+TGG | - | chr1_1:78029307-78029326 | Msa0046010:exon | 35.0% | |
| ATGCTTTCCTATACTTGCTT+GGG | - | chr1_1:78029819-78029838 | Msa0046010:intron | 35.0% | |
| ! | AGTAACCTGATTTAAAGTGC+TGG | + | chr1_1:78029868-78029887 | None:intergenic | 35.0% |
| CAGAATTAAGTTAACAGACG+CGG | + | chr1_1:78029952-78029971 | None:intergenic | 35.0% | |
| TAGACTAGATAGACTGATAG+AGG | - | chr1_1:78029988-78030007 | Msa0046010:intron | 35.0% | |
| GAAAGATAGAGGAATGGAAA+GGG | - | chr1_1:78030202-78030221 | Msa0046010:intron | 35.0% | |
| GGAAAATAAACCATGGAAAG+CGG | - | chr1_1:78030404-78030423 | Msa0046010:intron | 35.0% | |
| GAAAATAAACCATGGAAAGC+GGG | - | chr1_1:78030405-78030424 | Msa0046010:intron | 35.0% | |
| AAAATAAACCATGGAAAGCG+GGG | - | chr1_1:78030406-78030425 | Msa0046010:intron | 35.0% | |
| GGGATAAGAAAAAAAGGAAG+GGG | + | chr1_1:78030442-78030461 | None:intergenic | 35.0% | |
| GAGGGATAAGAAAAAAAGGA+AGG | + | chr1_1:78030444-78030463 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTGAGAATTTGG+AGG | + | chr1_1:78030463-78030482 | None:intergenic | 35.0% |
| TCAAGAATGATGCCATAATG+AGG | - | chr1_1:78030554-78030573 | Msa0046010:intron | 35.0% | |
| AGACTAATATGTTAGCTGCT+GGG | - | chr1_1:78030817-78030836 | Msa0046010:intron | 35.0% | |
| AAATGAATACAGAACCAGGT+TGG | + | chr1_1:78030853-78030872 | None:intergenic | 35.0% | |
| AGATTCATCCCGTAAATACA+TGG | - | chr1_1:78030892-78030911 | Msa0046010:intron | 35.0% | |
| GATTCATCCCGTAAATACAT+GGG | - | chr1_1:78030893-78030912 | Msa0046010:intron | 35.0% | |
| CTACTCTCAACAACAATTTG+GGG | + | chr1_1:78031083-78031102 | None:intergenic | 35.0% | |
| CCTACTCTCAACAACAATTT+GGG | + | chr1_1:78031084-78031103 | None:intergenic | 35.0% | |
| ! | CCAAATTGTTGTTGAGAGTA+GGG | - | chr1_1:78031082-78031101 | Msa0046010:intron | 35.0% |
| ! | CAAATTGTTGTTGAGAGTAG+GGG | - | chr1_1:78031083-78031102 | Msa0046010:intron | 35.0% |
| ! | AAATTGTTGTTGAGAGTAGG+GGG | - | chr1_1:78031084-78031103 | Msa0046010:intron | 35.0% |
| GTTCATCAAAGCACACAAAT+TGG | - | chr1_1:78031145-78031164 | Msa0046010:intron | 35.0% | |
| TACAGTAACAAAACAAGGGT+AGG | + | chr1_1:78031180-78031199 | None:intergenic | 35.0% | |
| GTTAGAAAAAGAGAGCAAGA+GGG | + | chr1_1:78031854-78031873 | None:intergenic | 35.0% | |
| AGTTAGAAAAAGAGAGCAAG+AGG | + | chr1_1:78031855-78031874 | None:intergenic | 35.0% | |
| !! | GAAGAGTATTGAACGAGAAA+GGG | + | chr1_1:78031919-78031938 | None:intergenic | 35.0% |
| TCGCAAGGATAATAGAATTG+GGG | + | chr1_1:78031942-78031961 | None:intergenic | 35.0% | |
| GTCGCAAGGATAATAGAATT+GGG | + | chr1_1:78031943-78031962 | None:intergenic | 35.0% | |
| AGTCGCAAGGATAATAGAAT+TGG | + | chr1_1:78031944-78031963 | None:intergenic | 35.0% | |
| ! | CAATGAATTTTCACCTTCGT+CGG | + | chr1_1:78032011-78032030 | None:intergenic | 35.0% |
| ! | TTGATGGTCTTCTCTAATAC+TGG | - | chr1_1:78032052-78032071 | Msa0046010:intron | 35.0% |
| AAGAATCAGAACCAAAACTG+TGG | + | chr1_1:78032102-78032121 | None:intergenic | 35.0% | |
| GCACTCAACAGATAAACAAA+TGG | + | chr1_1:78032140-78032159 | None:intergenic | 35.0% | |
| TGCTCCAAATTCTCTAATCA+TGG | - | chr1_1:78032168-78032187 | Msa0046010:intron | 35.0% | |
| ATGGCCATGATTAGAGAATT+TGG | + | chr1_1:78032175-78032194 | None:intergenic | 35.0% | |
| !! | TGACTGGAAGTCATTTTCTA+TGG | + | chr1_1:78032194-78032213 | None:intergenic | 35.0% |
| GATAAGTGAGATGAAACAAG+AGG | + | chr1_1:78032357-78032376 | None:intergenic | 35.0% | |
| ATCTCACTTATCTGATGAAG+AGG | - | chr1_1:78032365-78032384 | Msa0046010:intron | 35.0% | |
| TTTAAACCCCGAGTCAATAT+GGG | - | chr1_1:78032435-78032454 | Msa0046010:intron | 35.0% | |
| ATACATTTCTTCCTGTGGTA+TGG | - | chr1_1:78032601-78032620 | Msa0046010:intron | 35.0% | |
| !! | GAGAAGGTATGCTTATTTTC+AGG | + | chr1_1:78032860-78032879 | None:intergenic | 35.0% |
| CATACCTTCTCTCATTCTAT+TGG | - | chr1_1:78032869-78032888 | Msa0046010:intron | 35.0% | |
| ! | CAGCTCATCTAAAGTGAATT+GGG | + | chr1_1:78032982-78033001 | None:intergenic | 35.0% |
| ! | TCAGCTCATCTAAAGTGAAT+TGG | + | chr1_1:78032983-78033002 | None:intergenic | 35.0% |
| TAACCCACAAAAAAAGGTGA+GGG | + | chr1_1:78033058-78033077 | None:intergenic | 35.0% | |
| ATAACCCACAAAAAAAGGTG+AGG | + | chr1_1:78033059-78033078 | None:intergenic | 35.0% | |
| TTGTGGTTCAAACTGGATTT+GGG | + | chr1_1:78033286-78033305 | None:intergenic | 35.0% | |
| AAATCCAGTTTGAACCACAA+GGG | - | chr1_1:78033286-78033305 | Msa0046010:CDS | 35.0% | |
| AAACCGTAGGTTTCTATATC+TGG | + | chr1_1:78033322-78033341 | None:intergenic | 35.0% | |
| CATTTACCTATTCACATGTC+TGG | - | chr1_1:78033548-78033567 | Msa0046010:intron | 35.0% | |
| AATACACCAGACATGTGAAT+AGG | + | chr1_1:78033557-78033576 | None:intergenic | 35.0% | |
| GTCTGGTGTATTGCAAATTT+AGG | - | chr1_1:78033565-78033584 | Msa0046010:intron | 35.0% | |
| ! | ATTTCAAGCCTTTTTGCTCA+TGG | - | chr1_1:78033945-78033964 | Msa0046010:intron | 35.0% |
| ! | TTTCAAGCCTTTTTGCTCAT+GGG | - | chr1_1:78033946-78033965 | Msa0046010:intron | 35.0% |
| CTTGTCTCTATCTAATCTCA+CGG | + | chr1_1:78033978-78033997 | None:intergenic | 35.0% | |
| ATGTTTCTTCCCATGTAAAC+AGG | - | chr1_1:78034197-78034216 | Msa0046010:intron | 35.0% | |
| TGTTTCTTCCCATGTAAACA+GGG | - | chr1_1:78034198-78034217 | Msa0046010:intron | 35.0% | |
| TCTATAAAACGAAAACGCTG+CGG | + | chr1_1:78034282-78034301 | None:intergenic | 35.0% | |
| !! | TCTTTATCTCCCCGTTTTTA+TGG | - | chr1_1:78034346-78034365 | Msa0046010:CDS | 35.0% |
| TCAGAGATGTATGACAAGAA+TGG | - | chr1_1:78034461-78034480 | Msa0046010:CDS | 35.0% | |
| ! | ATGGCCTTTAAAAGCCAATA+AGG | - | chr1_1:78034686-78034705 | Msa0046010:five_prime_UTR | 35.0% |
| TCTAACCGATAACTGTCGTT+CGG | - | chr1_1:78029139-78029158 | Msa0046010:three_prime_UTR | 40.0% | |
| ATGATCACTTCTATTGGGCT+CGG | + | chr1_1:78029256-78029275 | None:intergenic | 40.0% | |
| !!! | AATCATCGCAATTTTGGGGT+TGG | + | chr1_1:78029352-78029371 | None:intergenic | 40.0% |
| AACCCCAAAATTGCGATGAT+TGG | - | chr1_1:78029351-78029370 | Msa0046010:CDS | 40.0% | |
| ! | TGCCAATCATCGCAATTTTG+GGG | + | chr1_1:78029356-78029375 | None:intergenic | 40.0% |
| ! | GTGCCAATCATCGCAATTTT+GGG | + | chr1_1:78029357-78029376 | None:intergenic | 40.0% |
| CCAATTCCTCTTAAACATGG+TGG | + | chr1_1:78029379-78029398 | None:intergenic | 40.0% | |
| CCACCATGTTTAAGAGGAAT+TGG | - | chr1_1:78029376-78029395 | Msa0046010:CDS | 40.0% | |
| ! | ATTGACGAGTCTGGAATACA+GGG | + | chr1_1:78029412-78029431 | None:intergenic | 40.0% |
| ! | AATTGACGAGTCTGGAATAC+AGG | + | chr1_1:78029413-78029432 | None:intergenic | 40.0% |
| TGAAGAAGAAGAAGAGAAGG+TGG | + | chr1_1:78029472-78029491 | None:intergenic | 40.0% | |
| GAGAGATGAAGATTGGAAGA+GGG | + | chr1_1:78029495-78029514 | None:intergenic | 40.0% | |
| AGAGAGATGAAGATTGGAAG+AGG | + | chr1_1:78029496-78029515 | None:intergenic | 40.0% | |
| CAAGCAAGTATAGGAAAGCA+TGG | + | chr1_1:78029820-78029839 | None:intergenic | 40.0% | |
| CATGCTTTCCTATACTTGCT+TGG | - | chr1_1:78029818-78029837 | Msa0046010:intron | 40.0% | |
| ATCTGCCAGCACTTTAAATC+AGG | - | chr1_1:78029860-78029879 | Msa0046010:intron | 40.0% | |
| ATTAAGTTAACAGACGCGGT+TGG | + | chr1_1:78029948-78029967 | None:intergenic | 40.0% | |
| CGCGTCTGTTAACTTAATTC+TGG | - | chr1_1:78029950-78029969 | Msa0046010:intron | 40.0% | |
| GAGTGAAATATGTCTGTACG+AGG | - | chr1_1:78030010-78030029 | Msa0046010:intron | 40.0% | |
| TGATCACTGTGACTCATTTC+TGG | - | chr1_1:78030054-78030073 | Msa0046010:intron | 40.0% | |
| !! | TCATTTCTGGCTTTGTGAGT+TGG | - | chr1_1:78030067-78030086 | Msa0046010:intron | 40.0% |
| AAACCTTATCCCACTAAGTG+GGG | + | chr1_1:78030147-78030166 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr1_1:78030148-78030167 | None:intergenic | 40.0% | |
| GGAAAGATAGAGGAATGGAA+AGG | - | chr1_1:78030201-78030220 | Msa0046010:intron | 40.0% | |
| AAATAAACCATGGAAAGCGG+GGG | - | chr1_1:78030407-78030426 | Msa0046010:intron | 40.0% | |
| ! | TTGACTCGTTCTCCTCATTA+TGG | + | chr1_1:78030569-78030588 | None:intergenic | 40.0% |
| TAATGAGGAGAACGAGTCAA+AGG | - | chr1_1:78030569-78030588 | Msa0046010:intron | 40.0% | |
| ATAACAGTACCTCATGCAGT+TGG | - | chr1_1:78030610-78030629 | Msa0046010:intron | 40.0% | |
| !! | GCTTTATGTGCTTTGAGATG+TGG | - | chr1_1:78030760-78030779 | Msa0046010:CDS | 40.0% |
| CAGCAGCTAACATATTAGTC+TGG | + | chr1_1:78030818-78030837 | None:intergenic | 40.0% | |
| CAGACTAATATGTTAGCTGC+TGG | - | chr1_1:78030816-78030835 | Msa0046010:intron | 40.0% | |
| GTACACAATTACCCCAAAAG+TGG | + | chr1_1:78030945-78030964 | None:intergenic | 40.0% | |
| CGGAACAGCTGAATTTCAAA+GGG | + | chr1_1:78031060-78031079 | None:intergenic | 40.0% | |
| ! | CCCAAATTGTTGTTGAGAGT+AGG | - | chr1_1:78031081-78031100 | Msa0046010:intron | 40.0% |
| CCCTACTCTCAACAACAATT+TGG | + | chr1_1:78031085-78031104 | None:intergenic | 40.0% | |
| !!! | TTTTGCTCTGGGATTACAGA+GGG | + | chr1_1:78031362-78031381 | None:intergenic | 40.0% |
| AGAGAAATGTCTCTTCTCTG+AGG | + | chr1_1:78031388-78031407 | None:intergenic | 40.0% | |
| TTTGAATTCCCCTTCTGTTG+TGG | - | chr1_1:78031445-78031464 | Msa0046010:intron | 40.0% | |
| GCAGTTAGGCAGTTTATTAC+AGG | + | chr1_1:78031510-78031529 | None:intergenic | 40.0% | |
| !! | TGTGTTGATTAGGAGCAGTT+AGG | + | chr1_1:78031524-78031543 | None:intergenic | 40.0% |
| AGTTACCCTATCAATACCAC+CGG | - | chr1_1:78031615-78031634 | Msa0046010:intron | 40.0% | |
| GTTTCTTTAACTCAGCCTTG+AGG | + | chr1_1:78031679-78031698 | None:intergenic | 40.0% | |
| CTTGTCAAGGTTCCAACAAT+GGG | + | chr1_1:78031729-78031748 | None:intergenic | 40.0% | |
| !! | ATGTGGCTTGGTTGTTTGAA+GGG | + | chr1_1:78031754-78031773 | None:intergenic | 40.0% |
| !! | TATGTGGCTTGGTTGTTTGA+AGG | + | chr1_1:78031755-78031774 | None:intergenic | 40.0% |
| AAATTCAAAGGGAATGGCTC+CGG | - | chr1_1:78031806-78031825 | Msa0046010:intron | 40.0% | |
| !! | GGAAGAGTATTGAACGAGAA+AGG | + | chr1_1:78031920-78031939 | None:intergenic | 40.0% |
| CGCAAGGATAATAGAATTGG+GGG | + | chr1_1:78031941-78031960 | None:intergenic | 40.0% | |
| TCAAACAAAGAAGAGTCGCA+AGG | + | chr1_1:78031957-78031976 | None:intergenic | 40.0% | |
| ! | ATTTTCACCTTCGTCGGAAA+AGG | + | chr1_1:78032005-78032024 | None:intergenic | 40.0% |
| TTAGAGAAGACCATCAACGA+TGG | + | chr1_1:78032049-78032068 | None:intergenic | 40.0% | |
| ! | TCTGTCATCTTCCACAGTTT+TGG | - | chr1_1:78032088-78032107 | Msa0046010:intron | 40.0% |
| ! | TAGAGAATTTGGAGCACAGA+TGG | + | chr1_1:78032164-78032183 | None:intergenic | 40.0% |
| !! | AGGATGAAAAAGCGTTGTTG+TGG | + | chr1_1:78032252-78032271 | None:intergenic | 40.0% |
| AGTTACCCTATCAATACCAC+CGG | - | chr1_1:78031615-78031634 | Msa0046010:intron | 40.0% | |
| TTCCATATCTGTTAGGCATC+CGG | + | chr1_1:78032333-78032352 | None:intergenic | 40.0% | |
| AAGAGGCTTCCATATCTGTT+AGG | + | chr1_1:78032340-78032359 | None:intergenic | 40.0% | |
| CTTTAAACCCCGAGTCAATA+TGG | - | chr1_1:78032434-78032453 | Msa0046010:intron | 40.0% | |
| ! | ACAGAGCAGTATGTAGGTTT+TGG | + | chr1_1:78032525-78032544 | None:intergenic | 40.0% |
| ATCATGACAGAGCAGTATGT+AGG | + | chr1_1:78032531-78032550 | None:intergenic | 40.0% | |
| ! | AATTGGAGTATCCATACCAC+AGG | + | chr1_1:78032615-78032634 | None:intergenic | 40.0% |
| TAGATCTTGTCCTCCACTTT+AGG | - | chr1_1:78032767-78032786 | Msa0046010:intron | 40.0% | |
| GTCTATATGCTGAAAGTGGA+AGG | - | chr1_1:78032811-78032830 | Msa0046010:intron | 40.0% | |
| ATACATGGGGAAAACAGAGT+GGG | + | chr1_1:78033008-78033027 | None:intergenic | 40.0% | |
| ! | ACTCTGTTTTCCCCATGTAT+GGG | - | chr1_1:78033008-78033027 | Msa0046010:CDS | 40.0% |
| !!! | TGTCCCTCACCTTTTTTTGT+GGG | - | chr1_1:78033052-78033071 | Msa0046010:CDS | 40.0% |
| ! | CTGGCAGATACCACATTTTA+TGG | - | chr1_1:78033148-78033167 | Msa0046010:intron | 40.0% |
| TAAGCAAGGGCCATAAAATG+TGG | + | chr1_1:78033161-78033180 | None:intergenic | 40.0% | |
| CTCACGACACATATAAGCAA+GGG | + | chr1_1:78033174-78033193 | None:intergenic | 40.0% | |
| CTTGTGGTTCAAACTGGATT+TGG | + | chr1_1:78033287-78033306 | None:intergenic | 40.0% | |
| CAAATCCAGTTTGAACCACA+AGG | - | chr1_1:78033285-78033304 | Msa0046010:CDS | 40.0% | |
| ! | TCTAATCCCTTTGGGTTTCT+TGG | - | chr1_1:78033659-78033678 | Msa0046010:intron | 40.0% |
| CATATGCCAAGAAACCCAAA+GGG | + | chr1_1:78033668-78033687 | None:intergenic | 40.0% | |
| TCATATGCCAAGAAACCCAA+AGG | + | chr1_1:78033669-78033688 | None:intergenic | 40.0% | |
| CATGAGTCTCCAAAACATTG+TGG | + | chr1_1:78034180-78034199 | None:intergenic | 40.0% | |
| GTTTCTTCCCATGTAAACAG+GGG | - | chr1_1:78034199-78034218 | Msa0046010:intron | 40.0% | |
| TTTCTTCCCATGTAAACAGG+GGG | - | chr1_1:78034200-78034219 | Msa0046010:intron | 40.0% | |
| TATTGCAAGTGTAAGTGCAG+TGG | + | chr1_1:78034255-78034274 | None:intergenic | 40.0% | |
| ! | GTTTTATAGAGACCGCACTA+AGG | - | chr1_1:78034292-78034311 | Msa0046010:intron | 40.0% |
| TAGAAGCCCAGCCATAAAAA+CGG | + | chr1_1:78034360-78034379 | None:intergenic | 40.0% | |
| !! | CGTTGACTTCTAAGAAGTGT+TGG | + | chr1_1:78034403-78034422 | None:intergenic | 40.0% |
| TTCTTAGAAGTCAACGCAGA+GGG | - | chr1_1:78034407-78034426 | Msa0046010:CDS | 40.0% | |
| GTAACCAAAAGATCAAAGGC+AGG | - | chr1_1:78034483-78034502 | Msa0046010:CDS | 40.0% | |
| AAAAGATCAAAGGCAGGCAA+GGG | - | chr1_1:78034489-78034508 | Msa0046010:CDS | 40.0% | |
| TATGAAGGAGCAGGCAAAAA+CGG | + | chr1_1:78034560-78034579 | None:intergenic | 40.0% | |
| ACTCACCGAACGACAGTTAT+CGG | + | chr1_1:78029147-78029166 | None:intergenic | 45.0% | |
| TTTGGGCTGCCCAGTTTATT+TGG | + | chr1_1:78029211-78029230 | None:intergenic | 45.0% | |
| ! | GGTGCCAATCATCGCAATTT+TGG | + | chr1_1:78029358-78029377 | None:intergenic | 45.0% |
| TTGGCACCACCATGTTTAAG+AGG | - | chr1_1:78029370-78029389 | Msa0046010:CDS | 45.0% | |
| GAAGTTGTGAAGAGACGAAG+AGG | + | chr1_1:78029436-78029455 | None:intergenic | 45.0% | |
| GGGTGAAGAAGAAGAAGAGA+AGG | + | chr1_1:78029475-78029494 | None:intergenic | 45.0% | |
| AGGAGGAGAGAGATGAAGAT+TGG | + | chr1_1:78029502-78029521 | None:intergenic | 45.0% | |
| ! | ATCTGGGACTGGATTTGTGT+TGG | - | chr1_1:78029770-78029789 | Msa0046010:intron | 45.0% |
| ! | TCTGGGACTGGATTTGTGTT+GGG | - | chr1_1:78029771-78029790 | Msa0046010:intron | 45.0% |
| CATGGTACCCAAGCAAGTAT+AGG | + | chr1_1:78029829-78029848 | None:intergenic | 45.0% | |
| TACTTGCTTGGGTACCATGA+TGG | - | chr1_1:78029830-78029849 | Msa0046010:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr1_1:78030149-78030168 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr1_1:78030146-78030165 | Msa0046010:intron | 45.0% | |
| ! | AGTGGGATAAGGTTTGGTTG+TGG | - | chr1_1:78030152-78030171 | Msa0046010:intron | 45.0% |
| AGATAGAGGAATGGAAAGGG+TGG | - | chr1_1:78030205-78030224 | Msa0046010:intron | 45.0% | |
| ! | GAGAATCCCTGACCTTGTTT+AGG | - | chr1_1:78030227-78030246 | Msa0046010:CDS | 45.0% |
| CACTCACCTAAACAAGGTCA+GGG | + | chr1_1:78030236-78030255 | None:intergenic | 45.0% | |
| TCACTCACCTAAACAAGGTC+AGG | + | chr1_1:78030237-78030256 | None:intergenic | 45.0% | |
| ! | TGACCTTGTTTAGGTGAGTG+AGG | - | chr1_1:78030236-78030255 | Msa0046010:CDS | 45.0% |
| ! | GACCTTGTTTAGGTGAGTGA+GGG | - | chr1_1:78030237-78030256 | Msa0046010:CDS | 45.0% |
| ATTGGACTAAAACCCTCCAG+GGG | + | chr1_1:78030381-78030400 | None:intergenic | 45.0% | |
| CATTGGACTAAAACCCTCCA+GGG | + | chr1_1:78030382-78030401 | None:intergenic | 45.0% | |
| TCATTGGACTAAAACCCTCC+AGG | + | chr1_1:78030383-78030402 | None:intergenic | 45.0% | |
| !! | GGAGGGTTTTAGTCCAATGA+AGG | - | chr1_1:78030383-78030402 | Msa0046010:intron | 45.0% |
| ACGGGATGAATCTGCTTCAA+TGG | + | chr1_1:78030885-78030904 | None:intergenic | 45.0% | |
| TCATCCCGTAAATACATGGG+TGG | - | chr1_1:78030896-78030915 | Msa0046010:intron | 45.0% | |
| CATCCCGTAAATACATGGGT+GGG | - | chr1_1:78030897-78030916 | Msa0046010:intron | 45.0% | |
| ATCCCGTAAATACATGGGTG+GGG | - | chr1_1:78030898-78030917 | Msa0046010:intron | 45.0% | |
| !!! | GGTGCTATTCCACCACTTTT+GGG | - | chr1_1:78030930-78030949 | Msa0046010:intron | 45.0% |
| !! | GTGCTATTCCACCACTTTTG+GGG | - | chr1_1:78030931-78030950 | Msa0046010:intron | 45.0% |
| CACAATTACCCCAAAAGTGG+TGG | + | chr1_1:78030942-78030961 | None:intergenic | 45.0% | |
| GCGGAACAGCTGAATTTCAA+AGG | + | chr1_1:78031061-78031080 | None:intergenic | 45.0% | |
| CTCTCAACAACAATTTGGGG+CGG | + | chr1_1:78031080-78031099 | None:intergenic | 45.0% | |
| ! | TTGTTGAGAGTAGGGGGTTT+TGG | - | chr1_1:78031090-78031109 | Msa0046010:intron | 45.0% |
| !!! | CTTTTGCTCTGGGATTACAG+AGG | + | chr1_1:78031363-78031382 | None:intergenic | 45.0% |
| CTCTCTGCCCAAAACCAATA+AGG | - | chr1_1:78031406-78031425 | Msa0046010:intron | 45.0% | |
| TCATTTGGCCACAACAGAAG+GGG | + | chr1_1:78031456-78031475 | None:intergenic | 45.0% | |
| GTCATTTGGCCACAACAGAA+GGG | + | chr1_1:78031457-78031476 | None:intergenic | 45.0% | |
| !! | GGTATCCGGTGGTATTGATA+GGG | + | chr1_1:78031623-78031642 | None:intergenic | 45.0% |
| !! | AGGTATCCGGTGGTATTGAT+AGG | + | chr1_1:78031624-78031643 | None:intergenic | 45.0% |
| GGTCGGTAATGTTAGGTATC+CGG | + | chr1_1:78031637-78031656 | None:intergenic | 45.0% | |
| TTCTAGCGGTCGGTAATGTT+AGG | + | chr1_1:78031644-78031663 | None:intergenic | 45.0% | |
| !!! | AAGGCTGTTTTTCTAGCGGT+CGG | + | chr1_1:78031654-78031673 | None:intergenic | 45.0% |
| !!! | GGACAAGGCTGTTTTTCTAG+CGG | + | chr1_1:78031658-78031677 | None:intergenic | 45.0% |
| ! | GAAAAACAGCCTTGTCCTCA+AGG | - | chr1_1:78031661-78031680 | Msa0046010:intron | 45.0% |
| TTAACTCAGCCTTGAGGACA+AGG | + | chr1_1:78031673-78031692 | None:intergenic | 45.0% | |
| ! | ACTTGAATTCTTTTGCCCCC+AGG | - | chr1_1:78031701-78031720 | Msa0046010:intron | 45.0% |
| GCTTGTCAAGGTTCCAACAA+TGG | + | chr1_1:78031730-78031749 | None:intergenic | 45.0% | |
| !! | TGTGGCTTGGTTGTTTGAAG+GGG | + | chr1_1:78031753-78031772 | None:intergenic | 45.0% |
| AAAAAGAGAGCAAGAGGGTG+GGG | + | chr1_1:78031849-78031868 | None:intergenic | 45.0% | |
| GAAAAAGAGAGCAAGAGGGT+GGG | + | chr1_1:78031850-78031869 | None:intergenic | 45.0% | |
| AGAAAAAGAGAGCAAGAGGG+TGG | + | chr1_1:78031851-78031870 | None:intergenic | 45.0% | |
| ! | TCAACAACCTTTTCCGACGA+AGG | - | chr1_1:78031995-78032014 | Msa0046010:intron | 45.0% |
| TCTTCCTTCTCCATCGTTGA+TGG | - | chr1_1:78032036-78032055 | Msa0046010:intron | 45.0% | |
| AAGACCATCAACGATGGAGA+AGG | + | chr1_1:78032043-78032062 | None:intergenic | 45.0% | |
| AATGACTTCCAGTCAGCATC+AGG | - | chr1_1:78032199-78032218 | Msa0046010:intron | 45.0% | |
| ATGACTTCCAGTCAGCATCA+GGG | - | chr1_1:78032200-78032219 | Msa0046010:intron | 45.0% | |
| ! | TGACTCGGGGTTTAAAGTAG+AGG | + | chr1_1:78032431-78032450 | None:intergenic | 45.0% |
| ! | TGACTCCTCCCATATTGACT+CGG | + | chr1_1:78032446-78032465 | None:intergenic | 45.0% |
| ! | TCTTGTCCTCCACTTTAGGA+TGG | - | chr1_1:78032771-78032790 | Msa0046010:intron | 45.0% |
| CATACATGGGGAAAACAGAG+TGG | + | chr1_1:78033009-78033028 | None:intergenic | 45.0% | |
| ! | CACTCTGTTTTCCCCATGTA+TGG | - | chr1_1:78033007-78033026 | Msa0046010:CDS | 45.0% |
| ACATGCATGTGCCCATACAT+GGG | + | chr1_1:78033022-78033041 | None:intergenic | 45.0% | |
| TACATGCATGTGCCCATACA+TGG | + | chr1_1:78033023-78033042 | None:intergenic | 45.0% | |
| !!! | CTGTCCCTCACCTTTTTTTG+TGG | - | chr1_1:78033051-78033070 | Msa0046010:CDS | 45.0% |
| ! | TTCCGGCTGCTTTGTATTTC+TGG | - | chr1_1:78033129-78033148 | Msa0046010:intron | 45.0% |
| TGCCAGAAATACAAAGCAGC+CGG | + | chr1_1:78033134-78033153 | None:intergenic | 45.0% | |
| CCTCACGACACATATAAGCA+AGG | + | chr1_1:78033175-78033194 | None:intergenic | 45.0% | |
| CCTTGCTTATATGTGTCGTG+AGG | - | chr1_1:78033172-78033191 | Msa0046010:intron | 45.0% | |
| CTGGAAATTTAGTGCCCTTG+TGG | + | chr1_1:78033303-78033322 | None:intergenic | 45.0% | |
| ! | GTTACACTGGTTGCTGCATT+TGG | - | chr1_1:78033460-78033479 | Msa0046010:intron | 45.0% |
| TACTCTCTTGCTGATCCATC+TGG | - | chr1_1:78033597-78033616 | Msa0046010:intron | 45.0% | |
| ACTCTCTTGCTGATCCATCT+GGG | - | chr1_1:78033598-78033617 | Msa0046010:intron | 45.0% | |
| !! | AAACAGCATTGGTGGCTATG+AGG | - | chr1_1:78033625-78033644 | Msa0046010:intron | 45.0% |
| TCTATCTAATCTCACGGCCA+TGG | + | chr1_1:78033972-78033991 | None:intergenic | 45.0% | |
| AACGGGGAGATAAAGAAGAC+TGG | + | chr1_1:78034342-78034361 | None:intergenic | 45.0% | |
| !! | TATCTCCCCGTTTTTATGGC+TGG | - | chr1_1:78034350-78034369 | Msa0046010:CDS | 45.0% |
| !! | ATCTCCCCGTTTTTATGGCT+GGG | - | chr1_1:78034351-78034370 | Msa0046010:CDS | 45.0% |
| AGAAGCCCAGCCATAAAAAC+GGG | + | chr1_1:78034359-78034378 | None:intergenic | 45.0% | |
| !! | AGAAGTGTTGGTTATCCGTG+CGG | + | chr1_1:78034391-78034410 | None:intergenic | 45.0% |
| CTTCTTAGAAGTCAACGCAG+AGG | - | chr1_1:78034406-78034425 | Msa0046010:CDS | 45.0% | |
| ! | TTTGAAATCCCCATCCTCTG+TGG | - | chr1_1:78034433-78034452 | Msa0046010:CDS | 45.0% |
| TGAAGTTTCCACAGAGGATG+GGG | + | chr1_1:78034444-78034463 | None:intergenic | 45.0% | |
| CTGAAGTTTCCACAGAGGAT+GGG | + | chr1_1:78034445-78034464 | None:intergenic | 45.0% | |
| ! | TCTGAAGTTTCCACAGAGGA+TGG | + | chr1_1:78034446-78034465 | None:intergenic | 45.0% |
| !! | CATCTCTGAAGTTTCCACAG+AGG | + | chr1_1:78034450-78034469 | None:intergenic | 45.0% |
| ! | CTTGCCTGCCTTTGATCTTT+TGG | + | chr1_1:78034490-78034509 | None:intergenic | 45.0% |
| CAAAAGATCAAAGGCAGGCA+AGG | - | chr1_1:78034488-78034507 | Msa0046010:CDS | 45.0% | |
| ! | ATGGAAGCATATGCTACAGG+TGG | + | chr1_1:78034527-78034546 | None:intergenic | 45.0% |
| ! | GCAATGGAAGCATATGCTAC+AGG | + | chr1_1:78034530-78034549 | None:intergenic | 45.0% |
| ! | CAAAAACGGGAAAGGTGCAA+TGG | + | chr1_1:78034546-78034565 | None:intergenic | 45.0% |
| ATGAAGGAGCAGGCAAAAAC+GGG | + | chr1_1:78034559-78034578 | None:intergenic | 45.0% | |
| ACAATGTCGTATGAAGGAGC+AGG | + | chr1_1:78034569-78034588 | None:intergenic | 45.0% | |
| !!! | ATTTTAATATATAGTTATTT+AGG | + | chr1_1:78031579-78031598 | None:intergenic | 5.0% |
| ! | AACTGTCGTTCGGTGAGTGT+CGG | - | chr1_1:78029149-78029168 | Msa0046010:three_prime_UTR | 50.0% |
| ! | AGTGTCGGAGAGCAATCACT+AGG | - | chr1_1:78029164-78029183 | Msa0046010:three_prime_UTR | 50.0% |
| ! | CTTCTGCTTTGGTCTGAAGC+TGG | - | chr1_1:78029318-78029337 | Msa0046010:exon | 50.0% |
| CGAAGAGGAATTGACGAGTC+TGG | + | chr1_1:78029421-78029440 | None:intergenic | 50.0% | |
| ! | GATGAGATCGGTGGACTTAG+AGG | + | chr1_1:78029532-78029551 | None:intergenic | 50.0% |
| TTTCCATAGTGACGAGCGAG+GGG | + | chr1_1:78029555-78029574 | None:intergenic | 50.0% | |
| GTTTCCATAGTGACGAGCGA+GGG | + | chr1_1:78029556-78029575 | None:intergenic | 50.0% | |
| AGTTTCCATAGTGACGAGCG+AGG | + | chr1_1:78029557-78029576 | None:intergenic | 50.0% | |
| !! | GAGACGAGCTTTGGAGAGTT+CGG | + | chr1_1:78029586-78029605 | None:intergenic | 50.0% |
| AACTCTCCAAAGCTCGTCTC+AGG | - | chr1_1:78029586-78029605 | Msa0046010:CDS | 50.0% | |
| TTGCTGGTGGTTGCAACATC+TGG | - | chr1_1:78029753-78029772 | Msa0046010:intron | 50.0% | |
| TGCTGGTGGTTGCAACATCT+GGG | - | chr1_1:78029754-78029773 | Msa0046010:intron | 50.0% | |
| CTGGGACTGGATTTGTGTTG+GGG | - | chr1_1:78029772-78029791 | Msa0046010:intron | 50.0% | |
| ACTGGATTTGTGTTGGGGAG+TGG | - | chr1_1:78029777-78029796 | Msa0046010:intron | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | + | chr1_1:78030135-78030154 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | - | chr1_1:78030134-78030153 | Msa0046010:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | - | chr1_1:78030135-78030154 | Msa0046010:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr1_1:78030141-78030160 | Msa0046010:intron | 50.0% | |
| TGCCCTCACTCACCTAAACA+AGG | + | chr1_1:78030242-78030261 | None:intergenic | 50.0% | |
| AACTCAATGGGGGAGGACTT+GGG | + | chr1_1:78030358-78030377 | None:intergenic | 50.0% | |
| GGTACTGTTATGCGTCCTGA+GGG | + | chr1_1:78030601-78030620 | None:intergenic | 50.0% | |
| ! | AGGTACTGTTATGCGTCCTG+AGG | + | chr1_1:78030602-78030621 | None:intergenic | 50.0% |
| AGTACCTCATGCAGTTGGCT+GGG | - | chr1_1:78030615-78030634 | Msa0046010:intron | 50.0% | |
| CACTACCTGCGTTGCTAGTA+GGG | + | chr1_1:78030668-78030687 | None:intergenic | 50.0% | |
| TCACTACCTGCGTTGCTAGT+AGG | + | chr1_1:78030669-78030688 | None:intergenic | 50.0% | |
| TCCCGTAAATACATGGGTGG+GGG | - | chr1_1:78030899-78030918 | Msa0046010:intron | 50.0% | |
| AGCCCCCACCCATGTATTTA+CGG | + | chr1_1:78030904-78030923 | None:intergenic | 50.0% | |
| !!! | CGGTGCTATTCCACCACTTT+TGG | - | chr1_1:78030929-78030948 | Msa0046010:intron | 50.0% |
| !! | CTCTGAGGAGCTTTTGCTCT+GGG | + | chr1_1:78031373-78031392 | None:intergenic | 50.0% |
| !! | TCTCTGAGGAGCTTTTGCTC+TGG | + | chr1_1:78031374-78031393 | None:intergenic | 50.0% |
| GGTCATTTGGCCACAACAGA+AGG | + | chr1_1:78031458-78031477 | None:intergenic | 50.0% | |
| CGGTAATGTTAGGTATCCGG+TGG | + | chr1_1:78031634-78031653 | None:intergenic | 50.0% | |
| TTCCAACAATGGGATCCTGG+GGG | + | chr1_1:78031719-78031738 | None:intergenic | 50.0% | |
| GTTCCAACAATGGGATCCTG+GGG | + | chr1_1:78031720-78031739 | None:intergenic | 50.0% | |
| GGTTCCAACAATGGGATCCT+GGG | + | chr1_1:78031721-78031740 | None:intergenic | 50.0% | |
| AGGTTCCAACAATGGGATCC+TGG | + | chr1_1:78031722-78031741 | None:intergenic | 50.0% | |
| TGTTTGAAGGGGGCTTGTCA+AGG | + | chr1_1:78031742-78031761 | None:intergenic | 50.0% | |
| !! | GTGGCTTGGTTGTTTGAAGG+GGG | + | chr1_1:78031752-78031771 | None:intergenic | 50.0% |
| AAGAGAACCCTGATGCTGAC+TGG | + | chr1_1:78032210-78032229 | None:intergenic | 50.0% | |
| AGTCAGCATCAGGGTTCTCT+TGG | - | chr1_1:78032209-78032228 | Msa0046010:intron | 50.0% | |
| !! | GGCATCCGGTGGTATTGATA+GGG | + | chr1_1:78032319-78032338 | None:intergenic | 50.0% |
| !! | AGGCATCCGGTGGTATTGAT+AGG | + | chr1_1:78032320-78032339 | None:intergenic | 50.0% |
| CATATCTGTTAGGCATCCGG+TGG | + | chr1_1:78032330-78032349 | None:intergenic | 50.0% | |
| CACCGGATGCCTAACAGATA+TGG | - | chr1_1:78032328-78032347 | Msa0046010:intron | 50.0% | |
| !! | CCTTTAGCTGCCTGGCTTTT+GGG | + | chr1_1:78032401-78032420 | None:intergenic | 50.0% |
| CCAAAAGCCAGGCAGCTAAA+GGG | - | chr1_1:78032399-78032418 | Msa0046010:intron | 50.0% | |
| CAAAAGCCAGGCAGCTAAAG+GGG | - | chr1_1:78032400-78032419 | Msa0046010:intron | 50.0% | |
| ! | GTTTTACCCCTTTAGCTGCC+TGG | + | chr1_1:78032409-78032428 | None:intergenic | 50.0% |
| AAACCCCGAGTCAATATGGG+AGG | - | chr1_1:78032438-78032457 | Msa0046010:intron | 50.0% | |
| !! | ACTCCTCCCATATTGACTCG+GGG | + | chr1_1:78032444-78032463 | None:intergenic | 50.0% |
| !! | GACTCCTCCCATATTGACTC+GGG | + | chr1_1:78032445-78032464 | None:intergenic | 50.0% |
| CTACAGCCATCCTAAAGTGG+AGG | + | chr1_1:78032780-78032799 | None:intergenic | 50.0% | |
| TGGCTACAGCCATCCTAAAG+TGG | + | chr1_1:78032783-78032802 | None:intergenic | 50.0% | |
| AATGCGAGCTCTCACTTCAG+AGG | + | chr1_1:78032903-78032922 | None:intergenic | 50.0% | |
| CATGCATGTGCCCATACATG+GGG | + | chr1_1:78033021-78033040 | None:intergenic | 50.0% | |
| AGTGCCCTTGTGGTTCAAAC+TGG | + | chr1_1:78033293-78033312 | None:intergenic | 50.0% | |
| !!! | AATGCTGTTTTCCGCCCAGA+TGG | + | chr1_1:78033615-78033634 | None:intergenic | 50.0% |
| ATCTGGGCGGAAAACAGCAT+TGG | - | chr1_1:78033614-78033633 | Msa0046010:intron | 50.0% | |
| GTCACACCCCCTGTTTACAT+GGG | + | chr1_1:78034209-78034228 | None:intergenic | 50.0% | |
| AGTCACACCCCCTGTTTACA+TGG | + | chr1_1:78034210-78034229 | None:intergenic | 50.0% | |
| ! | TAAACAGGGGGTGTGACTTC+AGG | - | chr1_1:78034212-78034231 | Msa0046010:intron | 50.0% |
| ACCGCACTAAGGAAAGAGCT+CGG | - | chr1_1:78034303-78034322 | Msa0046010:intron | 50.0% | |
| TCCGAGCTCTTTCCTTAGTG+CGG | + | chr1_1:78034307-78034326 | None:intergenic | 50.0% | |
| GAAGCCCAGCCATAAAAACG+GGG | + | chr1_1:78034358-78034377 | None:intergenic | 50.0% | |
| GACTTAGAGGCGGAAACAGG+AGG | + | chr1_1:78029519-78029538 | None:intergenic | 55.0% | |
| GTGGACTTAGAGGCGGAAAC+AGG | + | chr1_1:78029522-78029541 | None:intergenic | 55.0% | |
| ! | GAGATCGGTGGACTTAGAGG+CGG | + | chr1_1:78029529-78029548 | None:intergenic | 55.0% |
| TTCCATAGTGACGAGCGAGG+GGG | + | chr1_1:78029554-78029573 | None:intergenic | 55.0% | |
| GGTTCACCTGAGACGAGCTT+TGG | + | chr1_1:78029595-78029614 | None:intergenic | 55.0% | |
| ! | GTGGTTGCAACATCTGGGAC+TGG | - | chr1_1:78029759-78029778 | Msa0046010:intron | 55.0% |
| GGATTTGTGTTGGGGAGTGG+TGG | - | chr1_1:78029780-78029799 | Msa0046010:intron | 55.0% | |
| GGCAGATGCAGCAACCATCA+TGG | + | chr1_1:78029847-78029866 | None:intergenic | 55.0% | |
| GAACTCAATGGGGGAGGACT+TGG | + | chr1_1:78030359-78030378 | None:intergenic | 55.0% | |
| ACCCTCCAGGGGAACTCAAT+GGG | + | chr1_1:78030370-78030389 | None:intergenic | 55.0% | |
| AACCCTCCAGGGGAACTCAA+TGG | + | chr1_1:78030371-78030390 | None:intergenic | 55.0% | |
| CAGTACCTCATGCAGTTGGC+TGG | - | chr1_1:78030614-78030633 | Msa0046010:intron | 55.0% | |
| ! | CTGGGCATCCTCTGTTGGTT+TGG | - | chr1_1:78030633-78030652 | Msa0046010:intron | 55.0% |
| !! | GCATCCTCTGTTGGTTTGGC+TGG | - | chr1_1:78030637-78030656 | Msa0046010:intron | 55.0% |
| TGTGCCAGCCAAACCAACAG+AGG | + | chr1_1:78030644-78030663 | None:intergenic | 55.0% | |
| GCCCCCACCCATGTATTTAC+GGG | + | chr1_1:78030903-78030922 | None:intergenic | 55.0% | |
| AGAGCACACTCCCAAAAGCC+AGG | - | chr1_1:78032388-78032407 | Msa0046010:intron | 55.0% | |
| CCCAAAAGCCAGGCAGCTAA+AGG | - | chr1_1:78032398-78032417 | Msa0046010:intron | 55.0% | |
| !! | CCCTTTAGCTGCCTGGCTTT+TGG | + | chr1_1:78032402-78032421 | None:intergenic | 55.0% |
| !! | TTCAGATGGGCTGCAGCTTC+TGG | - | chr1_1:78033080-78033099 | Msa0046010:intron | 55.0% |
| GTGTCGTGAGGACTATGCTG+CGG | - | chr1_1:78033184-78033203 | Msa0046010:intron | 55.0% | |
| TGTCGTGAGGACTATGCTGC+GGG | - | chr1_1:78033185-78033204 | Msa0046010:intron | 55.0% | |
| CTCTTGCTGATCCATCTGGG+CGG | - | chr1_1:78033601-78033620 | Msa0046010:intron | 55.0% | |
| ! | TGGGCGGAAAACAGCATTGG+TGG | - | chr1_1:78033617-78033636 | Msa0046010:intron | 55.0% |
| ! | GCCTTTTTGCTCATGGGCCA+TGG | - | chr1_1:78033952-78033971 | Msa0046010:intron | 55.0% |
| GCCATGGCCCATGAGCAAAA+AGG | + | chr1_1:78033956-78033975 | None:intergenic | 55.0% | |
| GCTTCTAATTCACCGCCGCA+CGG | - | chr1_1:78034373-78034392 | Msa0046010:CDS | 55.0% | |
| !! | AGTGTTGGTTATCCGTGCGG+CGG | + | chr1_1:78034388-78034407 | None:intergenic | 55.0% |
| GGAGCAGGCAAAAACGGGAA+AGG | + | chr1_1:78034554-78034573 | None:intergenic | 55.0% | |
| ACGAGCGAGGGGGATGAGAT+CGG | + | chr1_1:78029544-78029563 | None:intergenic | 60.0% | |
| ATCCCCCTCGCTCGTCACTA+TGG | - | chr1_1:78029549-78029568 | Msa0046010:CDS | 60.0% | |
| CCTCCAGGGGAACTCAATGG+GGG | + | chr1_1:78030368-78030387 | None:intergenic | 60.0% | |
| CCCTCCAGGGGAACTCAATG+GGG | + | chr1_1:78030369-78030388 | None:intergenic | 60.0% | |
| CCCCATTGAGTTCCCCTGGA+GGG | - | chr1_1:78030366-78030385 | Msa0046010:intron | 60.0% | |
| GAGAAGTCCCCCGCTTTCCA+TGG | + | chr1_1:78030417-78030436 | None:intergenic | 60.0% | |
| AGTCAAAGGCCACTGCCCTC+AGG | - | chr1_1:78030583-78030602 | Msa0046010:intron | 60.0% | |
| GTTATGCGTCCTGAGGGCAG+TGG | + | chr1_1:78030595-78030614 | None:intergenic | 60.0% | |
| GATGCCCAGCCAACTGCATG+AGG | + | chr1_1:78030622-78030641 | None:intergenic | 60.0% | |
| GTTGGCTGGGCATCCTCTGT+TGG | - | chr1_1:78030628-78030647 | Msa0046010:intron | 60.0% | |
| CACAGCCCTACTAGCAACGC+AGG | - | chr1_1:78030660-78030679 | Msa0046010:intron | 60.0% | |
| !! | TGGGCTTGCTGCTTCCAACC+TGG | - | chr1_1:78030836-78030855 | Msa0046010:intron | 60.0% |
| ACATGGGTGGGGGCTGTAGT+CGG | - | chr1_1:78030909-78030928 | Msa0046010:intron | 60.0% | |
| TGCCCCCAGGATCCCATTGT+TGG | - | chr1_1:78031714-78031733 | Msa0046010:intron | 60.0% | |
| AAAGGGAATGGCTCCGGCGA+AGG | - | chr1_1:78031812-78031831 | Msa0046010:intron | 60.0% | |
| AATGGCTCCGGCGAAGGTTG+TGG | - | chr1_1:78031818-78031837 | Msa0046010:intron | 60.0% | |
| ATGGCTCCGGCGAAGGTTGT+GGG | - | chr1_1:78031819-78031838 | Msa0046010:intron | 60.0% | |
| GGTCTACCCACAACCTTCGC+CGG | + | chr1_1:78031828-78031847 | None:intergenic | 60.0% | |
| GGATATGCGCGCACGCACAA+AGG | + | chr1_1:78032504-78032523 | None:intergenic | 60.0% | |
| GTGAGGACTATGCTGCGGGA+GGG | - | chr1_1:78033189-78033208 | Msa0046010:intron | 60.0% | |
| ! | CAGGGGGTGTGACTTCAGGA+TGG | - | chr1_1:78034216-78034235 | Msa0046010:intron | 60.0% |
| AGCGAGGGGGATGAGATCGG+TGG | + | chr1_1:78029541-78029560 | None:intergenic | 65.0% | |
| CCAGGGGAACTCAATGGGGG+AGG | + | chr1_1:78030365-78030384 | None:intergenic | 65.0% | |
| CCTCCCCCATTGAGTTCCCC+TGG | - | chr1_1:78030362-78030381 | Msa0046010:intron | 65.0% | |
| CCCCCATTGAGTTCCCCTGG+AGG | - | chr1_1:78030365-78030384 | Msa0046010:intron | 65.0% | |
| CGTGAGGACTATGCTGCGGG+AGG | - | chr1_1:78033188-78033207 | Msa0046010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78029110 | 78034803 | 78029110 | ID=Msa0046010;Name=Msa0046010 |
| chr1_1 | mRNA | 78029110 | 78034803 | 78029110 | ID=Msa0046010-mRNA-1;Parent=Msa0046010;Name=Msa0046010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=256|1|1|1|1|1|7|211|415 |
| chr1_1 | exon | 78029110 | 78029694 | 78029110 | ID=Msa0046010-mRNA-1:exon:26776;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78030223 | 78030326 | 78030223 | ID=Msa0046010-mRNA-1:exon:26775;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78030703 | 78030828 | 78030703 | ID=Msa0046010-mRNA-1:exon:26774;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78032961 | 78033094 | 78032961 | ID=Msa0046010-mRNA-1:exon:26773;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78033232 | 78033369 | 78033232 | ID=Msa0046010-mRNA-1:exon:26772;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78034032 | 78034161 | 78034032 | ID=Msa0046010-mRNA-1:exon:26771;Parent=Msa0046010-mRNA-1 |
| chr1_1 | exon | 78034306 | 78034803 | 78034306 | ID=Msa0046010-mRNA-1:exon:26770;Parent=Msa0046010-mRNA-1 |
| chr1_1 | five_prime_UTR | 78034548 | 78034803 | 78034548 | ID=Msa0046010-mRNA-1:five_prime_utr;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78034306 | 78034547 | 78034306 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78034032 | 78034161 | 78034032 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78033232 | 78033369 | 78033232 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78032961 | 78033094 | 78032961 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78030703 | 78030828 | 78030703 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78030223 | 78030326 | 78030223 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | CDS | 78029321 | 78029694 | 78029321 | ID=Msa0046010-mRNA-1:cds;Parent=Msa0046010-mRNA-1 |
| chr1_1 | three_prime_UTR | 78029110 | 78029320 | 78029110 | ID=Msa0046010-mRNA-1:three_prime_utr;Parent=Msa0046010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
