AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050160 MtrunA17_Chr1g0152931 100.000 325 0 0 1 325 1 325 0.0 662
Msa0050160 MtrunA17_Chr3g0134271 85.846 325 43 2 1 325 1 322 0.0 570
Msa0050160 MtrunA17_Chr1g0198911 83.385 325 49 1 1 325 1 320 0.0 552
Msa0050160 MtrunA17_Chr4g0061721 59.006 322 127 1 3 324 2 318 2.23e-132 379
Msa0050160 MtrunA17_Chr4g0061731 59.752 323 124 2 3 324 2 319 2.64e-132 379
Msa0050160 MtrunA17_Chr8g0349621 30.449 312 165 11 6 281 23 318 1.06e-22 97.4
Msa0050160 MtrunA17_Chr3g0079001 28.754 313 182 13 38 316 40 345 1.59e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050160 AT3G16150.1 84.615 325 50 0 1 325 1 325 0.0 566
Msa0050160 AT5G08100.1 57.492 327 121 4 1 324 1 312 3.12e-125 361
Msa0050160 AT5G08100.2 57.490 247 88 3 80 324 1 232 3.90e-94 279
Msa0050160 AT4G00590.1 27.187 320 179 8 6 285 15 320 1.68e-20 91.7

Find 119 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGATGCGGTGCCGTTTC+AGG 0.158496 1_2:-3795032 Msa0050160:CDS
GGTTCATGGAGGTTGGAATT+TGG 0.195033 1_2:-3793696 Msa0050160:CDS
AAAAGGTACACAAGTATCTT+AGG 0.208923 1_2:+3793380 None:intergenic
ACTACGCACCCGACCGTTTC+AGG 0.242289 1_2:+3794069 None:intergenic
GGATCTGCCCTGACGGAAAA+AGG 0.260928 1_2:-3795095 Msa0050160:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.262833 1_2:-3793695 Msa0050160:CDS
ACTAAACGAGCCAGTGAAAT+TGG 0.271206 1_2:+3794990 None:intergenic
GTTTCATTGCAACTTGCATT+AGG 0.285399 1_2:-3793522 Msa0050160:three_prime_UTR
TTAACTGCAATGGCATGTTT+AGG 0.291387 1_2:-3793738 Msa0050160:CDS
TTTGTAGGGTGTGGAGGTTC+TGG 0.300802 1_2:-3794675 Msa0050160:intron
TTGTACTCTGCTTTGAAAAC+AGG 0.321167 1_2:+3793313 None:intergenic
AACGGATCCATTATTCAATT+CGG 0.328084 1_2:-3795123 Msa0050160:CDS
AGTAAAGGAGAAGTTGCTTA+TGG 0.336064 1_2:-3793763 Msa0050160:CDS
TAACTGCAATGGCATGTTTA+GGG 0.343986 1_2:-3793737 Msa0050160:CDS
GTTATTGAAGGTGAGGGAAT+TGG 0.347604 1_2:-3795147 Msa0050160:intron
TTTCATTGCAACTTGCATTA+GGG 0.350568 1_2:-3793521 Msa0050160:three_prime_UTR
CTTACTCGTGTTCTCAATCT+TGG 0.354252 1_2:-3795492 Msa0050160:CDS
TGTGCTGCTGCCACGTCAAC+AGG 0.356128 1_2:-3794027 Msa0050160:CDS
TGACGTTGAAGAGGGAGATT+AGG 0.362167 1_2:+3795534 None:intergenic
GTGTGCTGCAGTTTGATTAT+CGG 0.363877 1_2:-3794173 Msa0050160:intron
AACACGAGTAAGAAGTTGTT+TGG 0.379765 1_2:+3795503 None:intergenic
AACATCGATGGCAGAAAGAT+TGG 0.396249 1_2:+3795452 None:intergenic
ATTGCTGTGCATGGTGGTGC+TGG 0.397163 1_2:-3795564 Msa0050160:CDS
AGGGGATGTGCTTCTGAGGA+TGG 0.401581 1_2:-3793718 Msa0050160:CDS
ACGGATCCATTATTCAATTC+GGG 0.402987 1_2:-3795122 Msa0050160:CDS
TGCTTCTGAGGATGGGTTCA+TGG 0.405891 1_2:-3793710 Msa0050160:CDS
CCACGACCCGAATTGAATAA+TGG 0.409899 1_2:+3795116 None:intergenic
CTCATTGCTGTTTCTAGTAA+AGG 0.414337 1_2:-3793778 Msa0050160:CDS
TACTGTGGTTAAACCTGAAA+CGG 0.417200 1_2:+3795019 None:intergenic
TTTGATTATCGGATTCCATC+TGG 0.417677 1_2:-3794162 Msa0050160:CDS
TAATTATTTAGTTGTTTAAG+AGG 0.418424 1_2:-3793487 Msa0050160:three_prime_UTR
ATTGGTGACTCACCTTTGAT+AGG 0.420480 1_2:-3793976 Msa0050160:CDS
AGAGAGAAACATGGGTGGTT+GGG 0.423456 1_2:-3795589 Msa0050160:exon
CCATTATTCAATTCGGGTCG+TGG 0.423817 1_2:-3795116 Msa0050160:CDS
GGTTGGGCAATTGCTGTGCA+TGG 0.428468 1_2:-3795573 Msa0050160:CDS
CACTTTGGCGCGAGAGGTGT+CGG 0.430026 1_2:-3793884 Msa0050160:CDS
CTCTCTGAACTTTACCCTTA+CGG 0.430981 1_2:+3795620 None:intergenic
GGAAATGGAGGCTAGCATAA+TGG 0.434511 1_2:-3795066 Msa0050160:CDS
AAAGGTACACAAGTATCTTA+GGG 0.434945 1_2:+3793381 None:intergenic
GACGTTGAAGAGGGAGATTA+GGG 0.438575 1_2:+3795535 None:intergenic
ATTAAGAATCGTTTGGATGA+AGG 0.439748 1_2:-3793811 Msa0050160:CDS
GAGTGTCTACGCACCTGAAA+CGG 0.454306 1_2:-3794082 Msa0050160:CDS
AAAGGAAGCAAATACAATCT+TGG 0.457652 1_2:-3794603 Msa0050160:intron
GGGGATGTGCTTCTGAGGAT+GGG 0.460240 1_2:-3793717 Msa0050160:CDS
CAGCAGCACACCTTCCTTCA+CGG 0.468263 1_2:+3794040 None:intergenic
TGCAACTTGCATTAGGGTCC+CGG 0.468325 1_2:-3793515 Msa0050160:three_prime_UTR
TCAGGTGCGTAGACACTCAT+TGG 0.468761 1_2:+3794087 None:intergenic
GACTCACCTTTGATAGGAGC+CGG 0.472240 1_2:-3793970 Msa0050160:CDS
TAGTTGCCAGTGAAAATTGT+TGG 0.476331 1_2:-3793624 Msa0050160:three_prime_UTR
AGAAACTAAATTAAAAGAAA+AGG 0.480069 1_2:+3793599 None:intergenic
ACCTACGCGTGTAACCTTGC+TGG 0.480120 1_2:-3793946 Msa0050160:CDS
GAGGATGGGTTCATGGAGGT+TGG 0.480884 1_2:-3793703 Msa0050160:CDS
AACGGTCGGGTGCGTAGTTG+TGG 0.481328 1_2:-3794064 Msa0050160:CDS
AGCGCCGTTAAAAGCAAGAT+AGG 0.481695 1_2:+3794947 None:intergenic
AGTTGCCAGTGAAAATTGTT+GGG 0.481818 1_2:-3793623 Msa0050160:three_prime_UTR
GCTTATGGATTTAACTGCAA+TGG 0.484263 1_2:-3793748 Msa0050160:CDS
TTCACTGGCTCGTTTAGTCA+TGG 0.486469 1_2:-3794985 Msa0050160:CDS
AAGGTTACACGCGTAGGTCC+CGG 0.486913 1_2:+3793951 None:intergenic
GAAAGTCCAATGAAAATGAA+TGG 0.491181 1_2:-3794114 Msa0050160:CDS
TATGATAGCCTCACCTTCAC+CGG 0.497356 1_2:+3793912 None:intergenic
CTTCTTCTTGACGTTGAAGA+GGG 0.497744 1_2:+3795526 None:intergenic
GAGTTTGAGAGAGAGAAACA+TGG 0.504074 1_2:-3795598 Msa0050160:exon
CGTTTGGATGAAGGATATGC+TGG 0.504298 1_2:-3793802 Msa0050160:CDS
GTGATGGAATACAAAGGTCT+TGG 0.504451 1_2:-3793859 Msa0050160:CDS
AACAAAATGATTGGTCGGAT+TGG 0.504757 1_2:-3793994 Msa0050160:CDS
GAGAGAGAAACATGGGTGGT+TGG 0.505927 1_2:-3795590 Msa0050160:exon
CAACTAAATAATTACAGCAC+CGG 0.506844 1_2:+3793496 None:intergenic
GGGCTAATGAACAAAATGAT+TGG 0.512413 1_2:-3794003 Msa0050160:CDS
TGTACTCTGCTTTGAAAACA+GGG 0.512737 1_2:+3793314 None:intergenic
GCTTCTTCTTGACGTTGAAG+AGG 0.520285 1_2:+3795525 None:intergenic
GCGAGAGGTGTCGGCTGTGA+TGG 0.520900 1_2:-3793875 Msa0050160:CDS
GGCGTCTCATGCACCGGTGA+AGG 0.524434 1_2:-3793925 Msa0050160:CDS
AATTATTTAGTTGTTTAAGA+GGG 0.534165 1_2:-3793486 Msa0050160:three_prime_UTR
GGCTATCATACGTGGCACTT+TGG 0.535143 1_2:-3793899 Msa0050160:CDS
GCTGCTGCCACGTCAACAGG+CGG 0.537860 1_2:-3794024 Msa0050160:CDS
CTTGCTGGCGTCTCATGCAC+CGG 0.541455 1_2:-3793931 Msa0050160:CDS
AGTTTGAGAGAGAGAAACAT+GGG 0.545658 1_2:-3795597 Msa0050160:exon
CATTAGCCCGCCTGTTGACG+TGG 0.549451 1_2:+3794017 None:intergenic
TCTACGCACCTGAAACGGTC+GGG 0.555661 1_2:-3794077 Msa0050160:CDS
CTGCTGCCACGTCAACAGGC+GGG 0.561806 1_2:-3794023 Msa0050160:CDS
TAATGAACAAAATGATTGGT+CGG 0.563124 1_2:-3793999 Msa0050160:CDS
GAAGGTGAGGGAATTGGAAA+CGG 0.565330 1_2:-3795141 Msa0050160:intron
CAATGTTGGTATGCTTAAGC+TGG 0.567336 1_2:-3794627 Msa0050160:CDS
GGGTCGTGGATCTGCCCTGA+CGG 0.570628 1_2:-3795102 Msa0050160:CDS
GTTTAGGGGATGTGCTTCTG+AGG 0.570942 1_2:-3793722 Msa0050160:CDS
ACGTGGCACTTTGGCGCGAG+AGG 0.574745 1_2:-3793890 Msa0050160:CDS
TAGGTCCCGGCTCCTATCAA+AGG 0.574816 1_2:+3793964 None:intergenic
TTTATCACCGCTGACAATGT+TGG 0.576194 1_2:-3794641 Msa0050160:CDS
AACTAAATAATTACAGCACC+GGG 0.578336 1_2:+3793497 None:intergenic
CCACATGTTTCGTATCCAGA+TGG 0.581145 1_2:+3794147 None:intergenic
AACTGCAATGGCATGTTTAG+GGG 0.582673 1_2:-3793736 Msa0050160:CDS
CATCGATGTTGTTGAACTTG+TGG 0.587378 1_2:-3795439 Msa0050160:intron
CTCATGCACCGGTGAAGGTG+AGG 0.595337 1_2:-3793920 Msa0050160:CDS
TCTTGGTCTTCAAGAAGCAG+TGG 0.595757 1_2:-3793842 Msa0050160:CDS
ATGGAGGCTAGCATAATGGA+TGG 0.598729 1_2:-3795062 Msa0050160:CDS
ACTCACCTTTGATAGGAGCC+GGG 0.601444 1_2:-3793969 Msa0050160:CDS
TGCGTAGTTGTGGACCGTGA+AGG 0.611085 1_2:-3794054 Msa0050160:CDS
CACAAGTTCAACAACATCGA+TGG 0.615685 1_2:+3795440 None:intergenic
TTGAGAGAGAGAAACATGGG+TGG 0.619739 1_2:-3795594 Msa0050160:exon
AAAAGGAACGGTGGAAATGG+AGG 0.622339 1_2:-3795078 Msa0050160:CDS
GTCTACGCACCTGAAACGGT+CGG 0.626279 1_2:-3794078 Msa0050160:CDS
GCAACAAACTGTGATACCCA+AGG 0.628099 1_2:+3795670 None:intergenic
TGGTATGCTTAAGCTGGCAA+AGG 0.632666 1_2:-3794621 Msa0050160:CDS
GTACTCTGCTTTGAAAACAG+GGG 0.635682 1_2:+3793315 None:intergenic
CAACAAACTGTGATACCCAA+GGG 0.636582 1_2:+3795671 None:intergenic
TTAAAAGCAAGATAGGAATG+AGG 0.636686 1_2:+3794954 None:intergenic
AGGTACACAAGTATCTTAGG+GGG 0.644899 1_2:+3793383 None:intergenic
CGGTGCATGAGACGCCAGCA+AGG 0.648195 1_2:+3793932 None:intergenic
AAGGTACACAAGTATCTTAG+GGG 0.653273 1_2:+3793382 None:intergenic
TGGGCAATTGCTGTGCATGG+TGG 0.661106 1_2:-3795570 Msa0050160:CDS
TAGTTGTGGACCGTGAAGGA+AGG 0.661356 1_2:-3794050 Msa0050160:CDS
CCATCTGGATACGAAACATG+TGG 0.678131 1_2:-3794147 Msa0050160:CDS
GCCAGCAAGGTTACACGCGT+AGG 0.682958 1_2:+3793945 None:intergenic
GAAGGTGAGGCTATCATACG+TGG 0.685255 1_2:-3793907 Msa0050160:CDS
AAGCATACCAACATTGTCAG+CGG 0.698333 1_2:+3794634 None:intergenic
TTCTGAGGATGGGTTCATGG+AGG 0.702330 1_2:-3793707 Msa0050160:CDS
TCGGCTGTGATGGAATACAA+AGG 0.710713 1_2:-3793865 Msa0050160:CDS
GGTACACAAGTATCTTAGGG+GGG 0.718324 1_2:+3793384 None:intergenic
AACAAACTGTGATACCCAAG+GGG 0.729748 1_2:+3795672 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTGTTATTGA+AGG - chr1_2:3793852-3793871 Msa0050160:CDS 10.0%
!!! GTTTTTTTATCAAAAAAAAT+AGG - chr1_2:3794196-3794215 Msa0050160:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG - chr1_2:3794218-3794237 Msa0050160:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG - chr1_2:3795438-3795457 Msa0050160:intron 10.0%
!!! TTATTTATTTTTGTTATTGA+AGG - chr1_2:3793852-3793871 Msa0050160:CDS 10.0%
!!! GTTTTTTTATCAAAAAAAAT+AGG - chr1_2:3794196-3794215 Msa0050160:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG - chr1_2:3794218-3794237 Msa0050160:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG - chr1_2:3795438-3795457 Msa0050160:intron 10.0%
!!! AATATATTTTAACTATTCCA+AGG - chr1_2:3793803-3793822 Msa0050160:CDS 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG - chr1_2:3794217-3794236 Msa0050160:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG - chr1_2:3794321-3794340 Msa0050160:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG - chr1_2:3794322-3794341 Msa0050160:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG - chr1_2:3794464-3794483 Msa0050160:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG - chr1_2:3794553-3794572 Msa0050160:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG - chr1_2:3794755-3794774 Msa0050160:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG + chr1_2:3795415-3795434 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG - chr1_2:3795437-3795456 Msa0050160:intron 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG - chr1_2:3795524-3795543 Msa0050160:CDS 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG - chr1_2:3795525-3795544 Msa0050160:CDS 15.0%
!!! AATATATTTTAACTATTCCA+AGG - chr1_2:3793803-3793822 Msa0050160:CDS 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG - chr1_2:3794217-3794236 Msa0050160:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG - chr1_2:3794321-3794340 Msa0050160:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG - chr1_2:3794322-3794341 Msa0050160:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG - chr1_2:3794464-3794483 Msa0050160:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG - chr1_2:3794553-3794572 Msa0050160:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG - chr1_2:3794755-3794774 Msa0050160:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG + chr1_2:3795415-3795434 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG - chr1_2:3795437-3795456 Msa0050160:intron 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG - chr1_2:3795524-3795543 Msa0050160:CDS 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG - chr1_2:3795525-3795544 Msa0050160:CDS 15.0%
!! AAAAAAAAATTGCAGAGATT+TGG + chr1_2:3794174-3794193 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG - chr1_2:3794222-3794241 Msa0050160:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG - chr1_2:3794437-3794456 Msa0050160:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG + chr1_2:3794457-3794476 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG - chr1_2:3794465-3794484 Msa0050160:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG - chr1_2:3794552-3794571 Msa0050160:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG + chr1_2:3794669-3794688 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG - chr1_2:3795445-3795464 Msa0050160:CDS 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG - chr1_2:3795446-3795465 Msa0050160:CDS 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG - chr1_2:3795580-3795599 Msa0050160:CDS 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG - chr1_2:3795597-3795616 Msa0050160:exon 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG + chr1_2:3795651-3795670 None:intergenic 20.0%
!! AAAAAAAAATTGCAGAGATT+TGG + chr1_2:3794174-3794193 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG - chr1_2:3794222-3794241 Msa0050160:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG - chr1_2:3794437-3794456 Msa0050160:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG + chr1_2:3794457-3794476 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG - chr1_2:3794465-3794484 Msa0050160:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG - chr1_2:3794552-3794571 Msa0050160:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG + chr1_2:3794669-3794688 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG - chr1_2:3795445-3795464 Msa0050160:CDS 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG - chr1_2:3795446-3795465 Msa0050160:CDS 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG - chr1_2:3795580-3795599 Msa0050160:CDS 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG - chr1_2:3795597-3795616 Msa0050160:exon 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG + chr1_2:3795651-3795670 None:intergenic 20.0%
!!! GTGTTTTTGTTATTGATGTT+TGG + chr1_2:3793372-3793391 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG + chr1_2:3793785-3793804 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG - chr1_2:3793810-3793829 Msa0050160:CDS 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG - chr1_2:3793857-3793876 Msa0050160:CDS 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG - chr1_2:3793858-3793877 Msa0050160:CDS 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG + chr1_2:3794010-3794029 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG - chr1_2:3794011-3794030 Msa0050160:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG + chr1_2:3794149-3794168 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG - chr1_2:3794530-3794549 Msa0050160:intron 25.0%
! TCACATATTGAAATAAACGT+GGG - chr1_2:3794531-3794550 Msa0050160:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG - chr1_2:3794598-3794617 Msa0050160:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG + chr1_2:3794625-3794644 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG - chr1_2:3795012-3795031 Msa0050160:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG - chr1_2:3795193-3795212 Msa0050160:intron 25.0%
!!! GTGTTTTTGTTATTGATGTT+TGG + chr1_2:3793372-3793391 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG + chr1_2:3793785-3793804 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG - chr1_2:3793810-3793829 Msa0050160:CDS 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG - chr1_2:3793857-3793876 Msa0050160:CDS 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG - chr1_2:3793858-3793877 Msa0050160:CDS 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG + chr1_2:3794010-3794029 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG - chr1_2:3794011-3794030 Msa0050160:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG + chr1_2:3794149-3794168 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG - chr1_2:3794530-3794549 Msa0050160:intron 25.0%
! TCACATATTGAAATAAACGT+GGG - chr1_2:3794531-3794550 Msa0050160:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG - chr1_2:3794598-3794617 Msa0050160:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG + chr1_2:3794625-3794644 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG - chr1_2:3795012-3795031 Msa0050160:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG - chr1_2:3795193-3795212 Msa0050160:intron 25.0%
TCAATAACAAAAACACCGTA+AGG - chr1_2:3793376-3793395 Msa0050160:three_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG - chr1_2:3793377-3793396 Msa0050160:three_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG + chr1_2:3793706-3793725 None:intergenic 30.0%
!!! TACACGGTTTTATTTGTGTA+CGG + chr1_2:3793732-3793751 None:intergenic 30.0%
GCATGTATTAGATTCATACA+CGG + chr1_2:3793748-3793767 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG - chr1_2:3793888-3793907 Msa0050160:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG + chr1_2:3794060-3794079 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG - chr1_2:3794060-3794079 Msa0050160:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG + chr1_2:3794165-3794184 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG - chr1_2:3794228-3794247 Msa0050160:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG - chr1_2:3794408-3794427 Msa0050160:intron 30.0%
! ATTACATTGTACGGGTTAAA+AGG - chr1_2:3794473-3794492 Msa0050160:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG - chr1_2:3794474-3794493 Msa0050160:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG - chr1_2:3794503-3794522 Msa0050160:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG + chr1_2:3794704-3794723 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG - chr1_2:3794897-3794916 Msa0050160:intron 30.0%
ATTAAGAATCGTTTGGATGA+AGG - chr1_2:3795200-3795219 Msa0050160:intron 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG - chr1_2:3795449-3795468 Msa0050160:CDS 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG - chr1_2:3795450-3795469 Msa0050160:CDS 30.0%
TTTCATTGCAACTTGCATTA+GGG - chr1_2:3795490-3795509 Msa0050160:CDS 30.0%
AACTAAATAATTACAGCACC+GGG + chr1_2:3795517-3795536 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG + chr1_2:3795518-3795537 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG + chr1_2:3795633-3795652 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG + chr1_2:3795634-3795653 None:intergenic 30.0%
TCAATAACAAAAACACCGTA+AGG - chr1_2:3793376-3793395 Msa0050160:three_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG - chr1_2:3793377-3793396 Msa0050160:three_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG + chr1_2:3793706-3793725 None:intergenic 30.0%
!!! TACACGGTTTTATTTGTGTA+CGG + chr1_2:3793732-3793751 None:intergenic 30.0%
GCATGTATTAGATTCATACA+CGG + chr1_2:3793748-3793767 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG - chr1_2:3793888-3793907 Msa0050160:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG + chr1_2:3794060-3794079 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG - chr1_2:3794060-3794079 Msa0050160:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG + chr1_2:3794165-3794184 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG - chr1_2:3794228-3794247 Msa0050160:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG - chr1_2:3794408-3794427 Msa0050160:intron 30.0%
! ATTACATTGTACGGGTTAAA+AGG - chr1_2:3794473-3794492 Msa0050160:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG - chr1_2:3794474-3794493 Msa0050160:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG - chr1_2:3794503-3794522 Msa0050160:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG + chr1_2:3794704-3794723 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG - chr1_2:3794897-3794916 Msa0050160:intron 30.0%
ATTAAGAATCGTTTGGATGA+AGG - chr1_2:3795200-3795219 Msa0050160:intron 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG - chr1_2:3795449-3795468 Msa0050160:CDS 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG - chr1_2:3795450-3795469 Msa0050160:CDS 30.0%
TTTCATTGCAACTTGCATTA+GGG - chr1_2:3795490-3795509 Msa0050160:CDS 30.0%
AACTAAATAATTACAGCACC+GGG + chr1_2:3795517-3795536 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG + chr1_2:3795518-3795537 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG + chr1_2:3795633-3795652 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG + chr1_2:3795634-3795653 None:intergenic 30.0%
! GGCGTTTTTATAGGCAATTT+CGG + chr1_2:3793321-3793340 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG - chr1_2:3793414-3793433 Msa0050160:three_prime_UTR 35.0%
AACACGAGTAAGAAGTTGTT+TGG + chr1_2:3793511-3793530 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG + chr1_2:3793627-3793646 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG + chr1_2:3793654-3793673 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG + chr1_2:3793655-3793674 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG + chr1_2:3793671-3793690 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG + chr1_2:3793685-3793704 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG + chr1_2:3793697-3793716 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG + chr1_2:3793703-3793722 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG - chr1_2:3793703-3793722 Msa0050160:CDS 35.0%
AACTATTCCAAGGAATTTGG+AGG - chr1_2:3793813-3793832 Msa0050160:CDS 35.0%
ACTATTCCAAGGAATTTGGA+GGG - chr1_2:3793814-3793833 Msa0050160:CDS 35.0%
ACGGATCCATTATTCAATTC+GGG - chr1_2:3793889-3793908 Msa0050160:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG + chr1_2:3793995-3794014 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG - chr1_2:3794086-3794105 Msa0050160:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG - chr1_2:3794327-3794346 Msa0050160:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG - chr1_2:3794475-3794494 Msa0050160:intron 35.0%
TTTCAGAAAAACACACACTC+TGG + chr1_2:3794502-3794521 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG - chr1_2:3794502-3794521 Msa0050160:intron 35.0%
TTTGATTATCGGATTCCATC+TGG - chr1_2:3794849-3794868 Msa0050160:intron 35.0%
! GGAAGTCCATTCATTTTCAT+TGG + chr1_2:3794906-3794925 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG - chr1_2:3795008-3795027 Msa0050160:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG - chr1_2:3795017-3795036 Msa0050160:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG - chr1_2:3795233-3795252 Msa0050160:intron 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG - chr1_2:3795248-3795267 Msa0050160:intron 35.0%
GCTTATGGATTTAACTGCAA+TGG - chr1_2:3795263-3795282 Msa0050160:intron 35.0%
TTAACTGCAATGGCATGTTT+AGG - chr1_2:3795273-3795292 Msa0050160:intron 35.0%
TAACTGCAATGGCATGTTTA+GGG - chr1_2:3795274-3795293 Msa0050160:intron 35.0%
TAGTTGCCAGTGAAAATTGT+TGG - chr1_2:3795387-3795406 Msa0050160:intron 35.0%
AGTTGCCAGTGAAAATTGTT+GGG - chr1_2:3795388-3795407 Msa0050160:intron 35.0%
GTTTCATTGCAACTTGCATT+AGG - chr1_2:3795489-3795508 Msa0050160:CDS 35.0%
AAGGTACACAAGTATCTTAG+GGG + chr1_2:3795632-3795651 None:intergenic 35.0%
!! TGTACTCTGCTTTGAAAACA+GGG + chr1_2:3795700-3795719 None:intergenic 35.0%
!! TTGTACTCTGCTTTGAAAAC+AGG + chr1_2:3795701-3795720 None:intergenic 35.0%
! GGCGTTTTTATAGGCAATTT+CGG + chr1_2:3793321-3793340 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG - chr1_2:3793414-3793433 Msa0050160:three_prime_UTR 35.0%
AACACGAGTAAGAAGTTGTT+TGG + chr1_2:3793511-3793530 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG + chr1_2:3793627-3793646 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG + chr1_2:3793654-3793673 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG + chr1_2:3793655-3793674 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG + chr1_2:3793671-3793690 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG + chr1_2:3793685-3793704 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG + chr1_2:3793697-3793716 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG + chr1_2:3793703-3793722 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG - chr1_2:3793703-3793722 Msa0050160:CDS 35.0%
AACTATTCCAAGGAATTTGG+AGG - chr1_2:3793813-3793832 Msa0050160:CDS 35.0%
ACTATTCCAAGGAATTTGGA+GGG - chr1_2:3793814-3793833 Msa0050160:CDS 35.0%
ACGGATCCATTATTCAATTC+GGG - chr1_2:3793889-3793908 Msa0050160:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG + chr1_2:3793995-3794014 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG - chr1_2:3794086-3794105 Msa0050160:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG - chr1_2:3794327-3794346 Msa0050160:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG - chr1_2:3794475-3794494 Msa0050160:intron 35.0%
TTTCAGAAAAACACACACTC+TGG + chr1_2:3794502-3794521 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG - chr1_2:3794502-3794521 Msa0050160:intron 35.0%
TTTGATTATCGGATTCCATC+TGG - chr1_2:3794849-3794868 Msa0050160:intron 35.0%
! GGAAGTCCATTCATTTTCAT+TGG + chr1_2:3794906-3794925 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG - chr1_2:3795008-3795027 Msa0050160:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG - chr1_2:3795017-3795036 Msa0050160:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG - chr1_2:3795233-3795252 Msa0050160:intron 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG - chr1_2:3795248-3795267 Msa0050160:intron 35.0%
GCTTATGGATTTAACTGCAA+TGG - chr1_2:3795263-3795282 Msa0050160:intron 35.0%
TTAACTGCAATGGCATGTTT+AGG - chr1_2:3795273-3795292 Msa0050160:intron 35.0%
TAACTGCAATGGCATGTTTA+GGG - chr1_2:3795274-3795293 Msa0050160:intron 35.0%
TAGTTGCCAGTGAAAATTGT+TGG - chr1_2:3795387-3795406 Msa0050160:intron 35.0%
AGTTGCCAGTGAAAATTGTT+GGG - chr1_2:3795388-3795407 Msa0050160:intron 35.0%
GTTTCATTGCAACTTGCATT+AGG - chr1_2:3795489-3795508 Msa0050160:CDS 35.0%
AAGGTACACAAGTATCTTAG+GGG + chr1_2:3795632-3795651 None:intergenic 35.0%
!! TGTACTCTGCTTTGAAAACA+GGG + chr1_2:3795700-3795719 None:intergenic 35.0%
!! TTGTACTCTGCTTTGAAAAC+AGG + chr1_2:3795701-3795720 None:intergenic 35.0%
AACAAACTGTGATACCCAAG+GGG + chr1_2:3793342-3793361 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG + chr1_2:3793343-3793362 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG + chr1_2:3793394-3793413 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG - chr1_2:3793413-3793432 Msa0050160:three_prime_UTR 40.0%
CTTCTTCTTGACGTTGAAGA+GGG + chr1_2:3793488-3793507 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG - chr1_2:3793519-3793538 Msa0050160:three_prime_UTR 40.0%
AACATCGATGGCAGAAAGAT+TGG + chr1_2:3793562-3793581 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG + chr1_2:3793574-3793593 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG - chr1_2:3793572-3793591 Msa0050160:three_prime_UTR 40.0%
CGGTGGAAAAGGAACAAAAA+AGG + chr1_2:3793686-3793705 None:intergenic 40.0%
CGGTAGCCATGAAGTAATAA+TGG + chr1_2:3793712-3793731 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG - chr1_2:3793815-3793834 Msa0050160:CDS 40.0%
ATAATCCCCTCCAAATTCCT+TGG + chr1_2:3793823-3793842 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG - chr1_2:3793864-3793883 Msa0050160:CDS 40.0%
ACTAAACGAGCCAGTGAAAT+TGG + chr1_2:3794024-3794043 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG + chr1_2:3794133-3794152 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG - chr1_2:3794241-3794260 Msa0050160:intron 40.0%
TTTATCACCGCTGACAATGT+TGG - chr1_2:3794370-3794389 Msa0050160:intron 40.0%
AAGCATACCAACATTGTCAG+CGG + chr1_2:3794380-3794399 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG - chr1_2:3794384-3794403 Msa0050160:intron 40.0%
GTGTGCTGCAGTTTGATTAT+CGG - chr1_2:3794838-3794857 Msa0050160:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG - chr1_2:3795035-3795054 Msa0050160:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG - chr1_2:3795152-3795171 Msa0050160:intron 40.0%
AACTGCAATGGCATGTTTAG+GGG - chr1_2:3795275-3795294 Msa0050160:intron 40.0%
GTTCATGGAGGTTGGAATTT+GGG - chr1_2:3795316-3795335 Msa0050160:intron 40.0%
! AAGGACCCAACAATTTTCAC+TGG + chr1_2:3795396-3795415 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG + chr1_2:3795631-3795650 None:intergenic 40.0%
!! GTACTCTGCTTTGAAAACAG+GGG + chr1_2:3795699-3795718 None:intergenic 40.0%
AACAAACTGTGATACCCAAG+GGG + chr1_2:3793342-3793361 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG + chr1_2:3793343-3793362 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG + chr1_2:3793394-3793413 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG - chr1_2:3793413-3793432 Msa0050160:three_prime_UTR 40.0%
CTTCTTCTTGACGTTGAAGA+GGG + chr1_2:3793488-3793507 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG - chr1_2:3793519-3793538 Msa0050160:three_prime_UTR 40.0%
AACATCGATGGCAGAAAGAT+TGG + chr1_2:3793562-3793581 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG + chr1_2:3793574-3793593 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG - chr1_2:3793572-3793591 Msa0050160:three_prime_UTR 40.0%
CGGTGGAAAAGGAACAAAAA+AGG + chr1_2:3793686-3793705 None:intergenic 40.0%
CGGTAGCCATGAAGTAATAA+TGG + chr1_2:3793712-3793731 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG - chr1_2:3793815-3793834 Msa0050160:CDS 40.0%
ATAATCCCCTCCAAATTCCT+TGG + chr1_2:3793823-3793842 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG - chr1_2:3793864-3793883 Msa0050160:CDS 40.0%
ACTAAACGAGCCAGTGAAAT+TGG + chr1_2:3794024-3794043 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG + chr1_2:3794133-3794152 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG - chr1_2:3794241-3794260 Msa0050160:intron 40.0%
TTTATCACCGCTGACAATGT+TGG - chr1_2:3794370-3794389 Msa0050160:intron 40.0%
AAGCATACCAACATTGTCAG+CGG + chr1_2:3794380-3794399 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG - chr1_2:3794384-3794403 Msa0050160:intron 40.0%
GTGTGCTGCAGTTTGATTAT+CGG - chr1_2:3794838-3794857 Msa0050160:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG - chr1_2:3795035-3795054 Msa0050160:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG - chr1_2:3795152-3795171 Msa0050160:intron 40.0%
AACTGCAATGGCATGTTTAG+GGG - chr1_2:3795275-3795294 Msa0050160:intron 40.0%
GTTCATGGAGGTTGGAATTT+GGG - chr1_2:3795316-3795335 Msa0050160:intron 40.0%
! AAGGACCCAACAATTTTCAC+TGG + chr1_2:3795396-3795415 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG + chr1_2:3795631-3795650 None:intergenic 40.0%
!! GTACTCTGCTTTGAAAACAG+GGG + chr1_2:3795699-3795718 None:intergenic 40.0%
TTGCCTATAAAAACGCCCCT+TGG - chr1_2:3793324-3793343 Msa0050160:three_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG - chr1_2:3793325-3793344 Msa0050160:three_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG + chr1_2:3793330-3793349 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG + chr1_2:3793344-3793363 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG - chr1_2:3793417-3793436 Msa0050160:three_prime_UTR 45.0%
AGAGAGAAACATGGGTGGTT+GGG - chr1_2:3793422-3793441 Msa0050160:three_prime_UTR 45.0%
GACGTTGAAGAGGGAGATTA+GGG + chr1_2:3793479-3793498 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG + chr1_2:3793480-3793499 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG + chr1_2:3793489-3793508 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG + chr1_2:3793647-3793666 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG - chr1_2:3793870-3793889 Msa0050160:CDS 45.0%
CCACGACCCGAATTGAATAA+TGG + chr1_2:3793898-3793917 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG - chr1_2:3793895-3793914 Msa0050160:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG - chr1_2:3793930-3793949 Msa0050160:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG - chr1_2:3793933-3793952 Msa0050160:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG - chr1_2:3793945-3793964 Msa0050160:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG - chr1_2:3793949-3793968 Msa0050160:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG - chr1_2:3793967-3793986 Msa0050160:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG - chr1_2:3794026-3794045 Msa0050160:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG + chr1_2:3794067-3794086 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG + chr1_2:3794134-3794153 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG - chr1_2:3794330-3794349 Msa0050160:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG - chr1_2:3794390-3794409 Msa0050160:intron 45.0%
CCACATGTTTCGTATCCAGA+TGG + chr1_2:3794867-3794886 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG - chr1_2:3794864-3794883 Msa0050160:intron 45.0%
TATGATAGCCTCACCTTCAC+CGG + chr1_2:3795102-3795121 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG - chr1_2:3795146-3795165 Msa0050160:intron 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG - chr1_2:3795169-3795188 Msa0050160:intron 45.0%
CGTTTGGATGAAGGATATGC+TGG - chr1_2:3795209-3795228 Msa0050160:intron 45.0%
GGTTCATGGAGGTTGGAATT+TGG - chr1_2:3795315-3795334 Msa0050160:intron 45.0%
GGTACACAAGTATCTTAGGG+GGG + chr1_2:3795630-3795649 None:intergenic 45.0%
TTGCCTATAAAAACGCCCCT+TGG - chr1_2:3793324-3793343 Msa0050160:three_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG - chr1_2:3793325-3793344 Msa0050160:three_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG + chr1_2:3793330-3793349 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG + chr1_2:3793344-3793363 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG - chr1_2:3793417-3793436 Msa0050160:three_prime_UTR 45.0%
AGAGAGAAACATGGGTGGTT+GGG - chr1_2:3793422-3793441 Msa0050160:three_prime_UTR 45.0%
GACGTTGAAGAGGGAGATTA+GGG + chr1_2:3793479-3793498 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG + chr1_2:3793480-3793499 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG + chr1_2:3793489-3793508 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG + chr1_2:3793647-3793666 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG - chr1_2:3793870-3793889 Msa0050160:CDS 45.0%
CCACGACCCGAATTGAATAA+TGG + chr1_2:3793898-3793917 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG - chr1_2:3793895-3793914 Msa0050160:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG - chr1_2:3793930-3793949 Msa0050160:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG - chr1_2:3793933-3793952 Msa0050160:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG - chr1_2:3793945-3793964 Msa0050160:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG - chr1_2:3793949-3793968 Msa0050160:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG - chr1_2:3793967-3793986 Msa0050160:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG - chr1_2:3794026-3794045 Msa0050160:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG + chr1_2:3794067-3794086 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG + chr1_2:3794134-3794153 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG - chr1_2:3794330-3794349 Msa0050160:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG - chr1_2:3794390-3794409 Msa0050160:intron 45.0%
CCACATGTTTCGTATCCAGA+TGG + chr1_2:3794867-3794886 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG - chr1_2:3794864-3794883 Msa0050160:intron 45.0%
TATGATAGCCTCACCTTCAC+CGG + chr1_2:3795102-3795121 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG - chr1_2:3795146-3795165 Msa0050160:intron 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG - chr1_2:3795169-3795188 Msa0050160:intron 45.0%
CGTTTGGATGAAGGATATGC+TGG - chr1_2:3795209-3795228 Msa0050160:intron 45.0%
GGTTCATGGAGGTTGGAATT+TGG - chr1_2:3795315-3795334 Msa0050160:intron 45.0%
GGTACACAAGTATCTTAGGG+GGG + chr1_2:3795630-3795649 None:intergenic 45.0%
!! TTCAATTATTAATTAATTAT+TGG - chr1_2:3794722-3794741 Msa0050160:intron 5.0%
!! TTCAATTATTAATTAATTAT+TGG - chr1_2:3794722-3794741 Msa0050160:intron 5.0%
GAGAGAGAAACATGGGTGGT+TGG - chr1_2:3793421-3793440 Msa0050160:three_prime_UTR 50.0%
TATGTGGGTACGAGGAAGTG+TGG + chr1_2:3793639-3793658 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG - chr1_2:3793921-3793940 Msa0050160:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG + chr1_2:3793926-3793945 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG + chr1_2:3794127-3794146 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG - chr1_2:3794336-3794355 Msa0050160:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG + chr1_2:3794927-3794946 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG - chr1_2:3794929-3794948 Msa0050160:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG - chr1_2:3794961-3794980 Msa0050160:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG - chr1_2:3795041-3795060 Msa0050160:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG - chr1_2:3795042-3795061 Msa0050160:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG - chr1_2:3795104-3795123 Msa0050160:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG - chr1_2:3795112-3795131 Msa0050160:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG - chr1_2:3795289-3795308 Msa0050160:intron 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG - chr1_2:3795301-3795320 Msa0050160:intron 50.0%
! TTCTGAGGATGGGTTCATGG+AGG - chr1_2:3795304-3795323 Msa0050160:intron 50.0%
TGCAACTTGCATTAGGGTCC+CGG - chr1_2:3795496-3795515 Msa0050160:CDS 50.0%
GAGAGAGAAACATGGGTGGT+TGG - chr1_2:3793421-3793440 Msa0050160:three_prime_UTR 50.0%
TATGTGGGTACGAGGAAGTG+TGG + chr1_2:3793639-3793658 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG - chr1_2:3793921-3793940 Msa0050160:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG + chr1_2:3793926-3793945 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG + chr1_2:3794127-3794146 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG - chr1_2:3794336-3794355 Msa0050160:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG + chr1_2:3794927-3794946 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG - chr1_2:3794929-3794948 Msa0050160:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG - chr1_2:3794961-3794980 Msa0050160:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG - chr1_2:3795041-3795060 Msa0050160:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG - chr1_2:3795042-3795061 Msa0050160:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG - chr1_2:3795104-3795123 Msa0050160:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG - chr1_2:3795112-3795131 Msa0050160:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG - chr1_2:3795289-3795308 Msa0050160:intron 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG - chr1_2:3795301-3795320 Msa0050160:intron 50.0%
! TTCTGAGGATGGGTTCATGG+AGG - chr1_2:3795304-3795323 Msa0050160:intron 50.0%
TGCAACTTGCATTAGGGTCC+CGG - chr1_2:3795496-3795515 Msa0050160:CDS 50.0%
GGTTGGGCAATTGCTGTGCA+TGG - chr1_2:3793438-3793457 Msa0050160:three_prime_UTR 55.0%
TGGGCAATTGCTGTGCATGG+TGG - chr1_2:3793441-3793460 Msa0050160:three_prime_UTR 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG - chr1_2:3793447-3793466 Msa0050160:three_prime_UTR 55.0%
GGATCTGCCCTGACGGAAAA+AGG - chr1_2:3793916-3793935 Msa0050160:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG + chr1_2:3793927-3793946 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG - chr1_2:3793924-3793943 Msa0050160:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG + chr1_2:3793976-3793995 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG - chr1_2:3794933-3794952 Msa0050160:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG - chr1_2:3794934-3794953 Msa0050160:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG - chr1_2:3794957-3794976 Msa0050160:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG + chr1_2:3794974-3794993 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG + chr1_2:3795050-3795069 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG + chr1_2:3795063-3795082 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG - chr1_2:3795065-3795084 Msa0050160:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG - chr1_2:3795293-3795312 Msa0050160:intron 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG - chr1_2:3795294-3795313 Msa0050160:intron 55.0%
! GAGGATGGGTTCATGGAGGT+TGG - chr1_2:3795308-3795327 Msa0050160:intron 55.0%
GGTTGGGCAATTGCTGTGCA+TGG - chr1_2:3793438-3793457 Msa0050160:three_prime_UTR 55.0%
TGGGCAATTGCTGTGCATGG+TGG - chr1_2:3793441-3793460 Msa0050160:three_prime_UTR 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG - chr1_2:3793447-3793466 Msa0050160:three_prime_UTR 55.0%
GGATCTGCCCTGACGGAAAA+AGG - chr1_2:3793916-3793935 Msa0050160:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG + chr1_2:3793927-3793946 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG - chr1_2:3793924-3793943 Msa0050160:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG + chr1_2:3793976-3793995 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG - chr1_2:3794933-3794952 Msa0050160:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG - chr1_2:3794934-3794953 Msa0050160:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG - chr1_2:3794957-3794976 Msa0050160:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG + chr1_2:3794974-3794993 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG + chr1_2:3795050-3795069 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG + chr1_2:3795063-3795082 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG - chr1_2:3795065-3795084 Msa0050160:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG - chr1_2:3795293-3795312 Msa0050160:intron 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG - chr1_2:3795294-3795313 Msa0050160:intron 55.0%
! GAGGATGGGTTCATGGAGGT+TGG - chr1_2:3795308-3795327 Msa0050160:intron 55.0%
!! AGACGATGCGGTGCCGTTTC+AGG - chr1_2:3793979-3793998 Msa0050160:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG + chr1_2:3794945-3794964 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG - chr1_2:3794947-3794966 Msa0050160:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG - chr1_2:3794984-3795003 Msa0050160:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG + chr1_2:3794997-3795016 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG + chr1_2:3795069-3795088 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG - chr1_2:3795080-3795099 Msa0050160:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG - chr1_2:3795091-3795110 Msa0050160:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG - chr1_2:3795127-3795146 Msa0050160:CDS 60.0%
!! AGACGATGCGGTGCCGTTTC+AGG - chr1_2:3793979-3793998 Msa0050160:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG + chr1_2:3794945-3794964 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG - chr1_2:3794947-3794966 Msa0050160:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG - chr1_2:3794984-3795003 Msa0050160:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG + chr1_2:3794997-3795016 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG + chr1_2:3795069-3795088 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG - chr1_2:3795080-3795099 Msa0050160:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG - chr1_2:3795091-3795110 Msa0050160:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG - chr1_2:3795127-3795146 Msa0050160:CDS 60.0%
GGGTCGTGGATCTGCCCTGA+CGG - chr1_2:3793909-3793928 Msa0050160:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG - chr1_2:3794987-3795006 Msa0050160:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG - chr1_2:3794988-3795007 Msa0050160:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG + chr1_2:3795082-3795101 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG - chr1_2:3795086-3795105 Msa0050160:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG - chr1_2:3795121-3795140 Msa0050160:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG - chr1_2:3795136-3795155 Msa0050160:CDS 65.0%
GGGTCGTGGATCTGCCCTGA+CGG - chr1_2:3793909-3793928 Msa0050160:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG - chr1_2:3794987-3795006 Msa0050160:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG - chr1_2:3794988-3795007 Msa0050160:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG + chr1_2:3795082-3795101 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG - chr1_2:3795086-3795105 Msa0050160:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG - chr1_2:3795121-3795140 Msa0050160:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG - chr1_2:3795136-3795155 Msa0050160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3793305 3795728 3793305 ID=Msa0050160;Name=Msa0050160
chr1_2 mRNA 3793305 3795728 3793305 ID=Msa0050160-mRNA-1;Parent=Msa0050160;Name=Msa0050160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|1|1|4|385|325
chr1_2 exon 3793305 3794184 3793305 ID=Msa0050160-mRNA-1:exon:981;Parent=Msa0050160-mRNA-1
chr1_2 exon 3794604 3794690 3794604 ID=Msa0050160-mRNA-1:exon:980;Parent=Msa0050160-mRNA-1
chr1_2 exon 3794926 3795159 3794926 ID=Msa0050160-mRNA-1:exon:979;Parent=Msa0050160-mRNA-1
chr1_2 exon 3795440 3795728 3795440 ID=Msa0050160-mRNA-1:exon:978;Parent=Msa0050160-mRNA-1
chr1_2 five_prime_UTR 3795602 3795728 3795602 ID=Msa0050160-mRNA-1:five_prime_utr;Parent=Msa0050160-mRNA-1
chr1_2 CDS 3795440 3795601 3795440 ID=Msa0050160-mRNA-1:cds;Parent=Msa0050160-mRNA-1
chr1_2 CDS 3794926 3795159 3794926 ID=Msa0050160-mRNA-1:cds;Parent=Msa0050160-mRNA-1
chr1_2 CDS 3794604 3794690 3794604 ID=Msa0050160-mRNA-1:cds;Parent=Msa0050160-mRNA-1
chr1_2 CDS 3793690 3794184 3793690 ID=Msa0050160-mRNA-1:cds;Parent=Msa0050160-mRNA-1
chr1_2 three_prime_UTR 3793305 3793689 3793305 ID=Msa0050160-mRNA-1:three_prime_utr;Parent=Msa0050160-mRNA-1
Gene Sequence

>Msa0050160

ATGGGTGGTTGGGCAATTGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCTCTTCAACGTCAAGAAGAAGCCAAACAACTTCTTACTCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCTGCCATCGATGTTGTTGAACTTGTGGTGAGGGAATTGGAAACGGATCCATTATTCAATTCGGGTCGTGGATCTGCCCTGACGGAAAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGATGGACCAAAAAGACGATGCGGTGCCGTTTCAGGTTTAACCACAGTAAAAAATCCAATTTCACTGGCTCGTTTAGTCATGGATAAATCTCCTCATTCCTATCTTGCTTTTAACGGCGCTGAAGATTTTGCTAGACAACAGGGTGTGGAGGTTCTGGACAATGAGTACTTTATCACCGCTGACAATGTTGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGTTTGATTATCGGATTCCATCTGGATACGAAACATGTGGTGCAGCAGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGTGTCTACGCACCTGAAACGGTCGGGTGCGTAGTTGTGGACCGTGAAGGAAGGTGTGCTGCTGCCACGTCAACAGGCGGGCTAATGAACAAAATGATTGGTCGGATTGGTGACTCACCTTTGATAGGAGCCGGGACCTACGCGTGTAACCTTGCTGGCGTCTCATGCACCGGTGAAGGTGAGGCTATCATACGTGGCACTTTGGCGCGAGAGGTGTCGGCTGTGATGGAATACAAAGGTCTTGGTCTTCAAGAAGCAGTGGATTTTGTCATTAAGAATCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAGTAAAGGAGAAGTTGCTTATGGATTTAACTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTAG
Protein sequence

>Msa0050160

MGGWAIAVHGGAGVDPNLPLQRQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEDFARQQGVEVLDNEYFITADNVGMLKLAKEANTILFDYRIPSGYETCGAAVESPMKMNGLPMSVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACNLAGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKNRLDEGYAGLIAVSSKGEVAYGFNCNGMFRGCASEDGFMEVGIWE*