AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097080 MtrunA17_Chr1g0152931 100.000 325 0 0 1 325 1 325 0.0 662
Msa0097080 MtrunA17_Chr3g0134271 85.846 325 43 2 1 325 1 322 0.0 570
Msa0097080 MtrunA17_Chr1g0198911 83.385 325 49 1 1 325 1 320 0.0 552
Msa0097080 MtrunA17_Chr4g0061721 59.006 322 127 1 3 324 2 318 2.23e-132 379
Msa0097080 MtrunA17_Chr4g0061731 59.752 323 124 2 3 324 2 319 2.64e-132 379
Msa0097080 MtrunA17_Chr8g0349621 30.449 312 165 11 6 281 23 318 1.06e-22 97.4
Msa0097080 MtrunA17_Chr3g0079001 28.754 313 182 13 38 316 40 345 1.59e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097080 AT3G16150.1 84.615 325 50 0 1 325 1 325 0.0 566
Msa0097080 AT5G08100.1 57.492 327 121 4 1 324 1 312 3.12e-125 361
Msa0097080 AT5G08100.2 57.490 247 88 3 80 324 1 232 3.90e-94 279
Msa0097080 AT4G00590.1 27.187 320 179 8 6 285 15 320 1.68e-20 91.7

Find 116 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGATGCGGTGCCGTTTC+AGG 0.158496 1_3:+2891876 Msa0097080:CDS
GGTTCATGGAGGTTGGAATT+TGG 0.195033 1_3:+2893206 Msa0097080:CDS
AAAAGGTACACAAGTATCTT+AGG 0.208923 1_3:-2893522 None:intergenic
ACTACGCACCCGACCGTTTC+AGG 0.242289 1_3:-2892833 None:intergenic
GGATCTGCCCTGACGGAAAA+AGG 0.260928 1_3:+2891813 Msa0097080:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.262833 1_3:+2893207 Msa0097080:CDS
ACTAAACGAGCCAGTGAAAT+TGG 0.271206 1_3:-2891918 None:intergenic
GTTTCATTGCAACTTGCATT+AGG 0.285399 1_3:+2893380 Msa0097080:three_prime_UTR
TTAACTGCAATGGCATGTTT+AGG 0.291387 1_3:+2893164 Msa0097080:CDS
TTTGTAGGGTGTGGAGGTTC+TGG 0.300802 1_3:+2892227 Msa0097080:intron
AACGGATCCATTATTCAATT+CGG 0.328084 1_3:+2891785 Msa0097080:CDS
AGTAAAGGAGAAGTTGCTTA+TGG 0.336064 1_3:+2893139 Msa0097080:CDS
TAACTGCAATGGCATGTTTA+GGG 0.343986 1_3:+2893165 Msa0097080:CDS
GTTATTGAAGGTGAGGGAAT+TGG 0.347604 1_3:+2891761 Msa0097080:intron
TTTCATTGCAACTTGCATTA+GGG 0.350568 1_3:+2893381 Msa0097080:three_prime_UTR
CTTACTCGTGTTCTCAATCT+TGG 0.354252 1_3:+2891423 Msa0097080:CDS
TGTGCTGCTGCCACGTCAAC+AGG 0.356128 1_3:+2892875 Msa0097080:CDS
TGACGTTGAAGAGGGAGATT+AGG 0.362167 1_3:-2891381 None:intergenic
GTGTGCTGCAGTTTGATTAT+CGG 0.363877 1_3:+2892729 Msa0097080:intron
AACACGAGTAAGAAGTTGTT+TGG 0.379765 1_3:-2891412 None:intergenic
AACATCGATGGCAGAAAGAT+TGG 0.396249 1_3:-2891463 None:intergenic
ATTGCTGTGCATGGTGGTGC+TGG 0.397163 1_3:+2891351 Msa0097080:CDS
AGGGGATGTGCTTCTGAGGA+TGG 0.401581 1_3:+2893184 Msa0097080:CDS
ACGGATCCATTATTCAATTC+GGG 0.402987 1_3:+2891786 Msa0097080:CDS
TGCTTCTGAGGATGGGTTCA+TGG 0.405891 1_3:+2893192 Msa0097080:CDS
CCACGACCCGAATTGAATAA+TGG 0.409899 1_3:-2891792 None:intergenic
CTCATTGCTGTTTCTAGTAA+AGG 0.414337 1_3:+2893124 Msa0097080:CDS
TACTGTGGTTAAACCTGAAA+CGG 0.417200 1_3:-2891889 None:intergenic
TTTGATTATCGGATTCCATC+TGG 0.417677 1_3:+2892740 Msa0097080:CDS
TAATTATTTAGTTGTTTAAG+AGG 0.418424 1_3:+2893415 Msa0097080:three_prime_UTR
ATTGGTGACTCACCTTTGAT+AGG 0.420480 1_3:+2892926 Msa0097080:CDS
AGAGAGAAACATGGGTGGTT+GGG 0.423456 1_3:+2891326 Msa0097080:exon
CCATTATTCAATTCGGGTCG+TGG 0.423817 1_3:+2891792 Msa0097080:CDS
GGTTGGGCAATTGCTGTGCA+TGG 0.428468 1_3:+2891342 Msa0097080:CDS
CACTTTGGCGCGAGAGGTGT+CGG 0.430026 1_3:+2893018 Msa0097080:CDS
CTCTCTGAACTTTACCCTTA+CGG 0.430981 1_3:-2891295 None:intergenic
GGAAATGGAGGCTAGCATAA+TGG 0.434511 1_3:+2891842 Msa0097080:CDS
AAAGGTACACAAGTATCTTA+GGG 0.434945 1_3:-2893521 None:intergenic
GACGTTGAAGAGGGAGATTA+GGG 0.438575 1_3:-2891380 None:intergenic
ATTAAGAATCGTTTGGATGA+AGG 0.439748 1_3:+2893091 Msa0097080:CDS
GAGTGTCTACGCACCTGAAA+CGG 0.454306 1_3:+2892820 Msa0097080:CDS
AAAGGAAGCAAATACAATCT+TGG 0.457652 1_3:+2892299 Msa0097080:CDS
GGGGATGTGCTTCTGAGGAT+GGG 0.460240 1_3:+2893185 Msa0097080:CDS
CAGCAGCACACCTTCCTTCA+CGG 0.468263 1_3:-2892862 None:intergenic
TGCAACTTGCATTAGGGTCC+CGG 0.468325 1_3:+2893387 Msa0097080:three_prime_UTR
TCAGGTGCGTAGACACTCAT+TGG 0.468761 1_3:-2892815 None:intergenic
GACTCACCTTTGATAGGAGC+CGG 0.472240 1_3:+2892932 Msa0097080:CDS
TAGTTGCCAGTGAAAATTGT+TGG 0.476331 1_3:+2893278 Msa0097080:three_prime_UTR
AGAAACTAAATTAAAAGAAA+AGG 0.480069 1_3:-2893303 None:intergenic
ACCTACGCGTGTAACCTTGC+TGG 0.480120 1_3:+2892956 Msa0097080:CDS
GAGGATGGGTTCATGGAGGT+TGG 0.480884 1_3:+2893199 Msa0097080:CDS
AACGGTCGGGTGCGTAGTTG+TGG 0.481328 1_3:+2892838 Msa0097080:CDS
AGCGCCGTTAAAAGCAAGAT+AGG 0.481695 1_3:-2891961 None:intergenic
AGTTGCCAGTGAAAATTGTT+GGG 0.481818 1_3:+2893279 Msa0097080:three_prime_UTR
GCTTATGGATTTAACTGCAA+TGG 0.484263 1_3:+2893154 Msa0097080:CDS
TTCACTGGCTCGTTTAGTCA+TGG 0.486469 1_3:+2891923 Msa0097080:CDS
AAGGTTACACGCGTAGGTCC+CGG 0.486913 1_3:-2892951 None:intergenic
GAAAGTCCAATGAAAATGAA+TGG 0.491181 1_3:+2892788 Msa0097080:CDS
TATGATAGCCTCACCTTCAC+CGG 0.497356 1_3:-2892990 None:intergenic
CTTCTTCTTGACGTTGAAGA+GGG 0.497744 1_3:-2891389 None:intergenic
GAGTTTGAGAGAGAGAAACA+TGG 0.504074 1_3:+2891317 Msa0097080:exon
CGTTTGGATGAAGGATATGC+TGG 0.504298 1_3:+2893100 Msa0097080:CDS
GTGATGGAATACAAAGGTCT+TGG 0.504451 1_3:+2893043 Msa0097080:CDS
AACAAAATGATTGGTCGGAT+TGG 0.504757 1_3:+2892908 Msa0097080:CDS
GAGAGAGAAACATGGGTGGT+TGG 0.505927 1_3:+2891325 Msa0097080:exon
CAACTAAATAATTACAGCAC+CGG 0.506844 1_3:-2893406 None:intergenic
GGGCTAATGAACAAAATGAT+TGG 0.512413 1_3:+2892899 Msa0097080:CDS
GCTTCTTCTTGACGTTGAAG+AGG 0.520285 1_3:-2891390 None:intergenic
GCGAGAGGTGTCGGCTGTGA+TGG 0.520900 1_3:+2893027 Msa0097080:CDS
GGCGTCTCATGCACCGGTGA+AGG 0.524434 1_3:+2892977 Msa0097080:CDS
AATTATTTAGTTGTTTAAGA+GGG 0.534165 1_3:+2893416 Msa0097080:three_prime_UTR
GGCTATCATACGTGGCACTT+TGG 0.535143 1_3:+2893003 Msa0097080:CDS
GCTGCTGCCACGTCAACAGG+CGG 0.537860 1_3:+2892878 Msa0097080:CDS
CTTGCTGGCGTCTCATGCAC+CGG 0.541455 1_3:+2892971 Msa0097080:CDS
AGTTTGAGAGAGAGAAACAT+GGG 0.545658 1_3:+2891318 Msa0097080:exon
CATTAGCCCGCCTGTTGACG+TGG 0.549451 1_3:-2892885 None:intergenic
TCTACGCACCTGAAACGGTC+GGG 0.555661 1_3:+2892825 Msa0097080:CDS
CTGCTGCCACGTCAACAGGC+GGG 0.561806 1_3:+2892879 Msa0097080:CDS
TAATGAACAAAATGATTGGT+CGG 0.563124 1_3:+2892903 Msa0097080:CDS
GAAGGTGAGGGAATTGGAAA+CGG 0.565330 1_3:+2891767 Msa0097080:intron
CAATGTTGGTATGCTTAAGC+TGG 0.567336 1_3:+2892275 Msa0097080:CDS
GGGTCGTGGATCTGCCCTGA+CGG 0.570628 1_3:+2891806 Msa0097080:CDS
GTTTAGGGGATGTGCTTCTG+AGG 0.570942 1_3:+2893180 Msa0097080:CDS
ACGTGGCACTTTGGCGCGAG+AGG 0.574745 1_3:+2893012 Msa0097080:CDS
TAGGTCCCGGCTCCTATCAA+AGG 0.574816 1_3:-2892938 None:intergenic
TTTATCACCGCTGACAATGT+TGG 0.576194 1_3:+2892261 Msa0097080:CDS
AACTAAATAATTACAGCACC+GGG 0.578336 1_3:-2893405 None:intergenic
CCACATGTTTCGTATCCAGA+TGG 0.581145 1_3:-2892755 None:intergenic
AACTGCAATGGCATGTTTAG+GGG 0.582673 1_3:+2893166 Msa0097080:CDS
CATCGATGTTGTTGAACTTG+TGG 0.587378 1_3:+2891476 Msa0097080:CDS
CTCATGCACCGGTGAAGGTG+AGG 0.595337 1_3:+2892982 Msa0097080:CDS
TCTTGGTCTTCAAGAAGCAG+TGG 0.595757 1_3:+2893060 Msa0097080:CDS
ATGGAGGCTAGCATAATGGA+TGG 0.598729 1_3:+2891846 Msa0097080:CDS
ACTCACCTTTGATAGGAGCC+GGG 0.601444 1_3:+2892933 Msa0097080:CDS
TGCGTAGTTGTGGACCGTGA+AGG 0.611085 1_3:+2892848 Msa0097080:CDS
CACAAGTTCAACAACATCGA+TGG 0.615685 1_3:-2891475 None:intergenic
TTGAGAGAGAGAAACATGGG+TGG 0.619739 1_3:+2891321 Msa0097080:exon
AAAAGGAACGGTGGAAATGG+AGG 0.622339 1_3:+2891830 Msa0097080:CDS
GTCTACGCACCTGAAACGGT+CGG 0.626279 1_3:+2892824 Msa0097080:CDS
GCAACAAACTGTGATACCCA+AGG 0.628099 1_3:-2891245 None:intergenic
TGGTATGCTTAAGCTGGCAA+AGG 0.632666 1_3:+2892281 Msa0097080:CDS
CAACAAACTGTGATACCCAA+GGG 0.636582 1_3:-2891244 None:intergenic
TTAAAAGCAAGATAGGAATG+AGG 0.636686 1_3:-2891954 None:intergenic
AGGTACACAAGTATCTTAGG+GGG 0.644899 1_3:-2893519 None:intergenic
CGGTGCATGAGACGCCAGCA+AGG 0.648195 1_3:-2892970 None:intergenic
AAGGTACACAAGTATCTTAG+GGG 0.653273 1_3:-2893520 None:intergenic
TGGGCAATTGCTGTGCATGG+TGG 0.661106 1_3:+2891345 Msa0097080:CDS
TAGTTGTGGACCGTGAAGGA+AGG 0.661356 1_3:+2892852 Msa0097080:CDS
CCATCTGGATACGAAACATG+TGG 0.678131 1_3:+2892755 Msa0097080:CDS
GCCAGCAAGGTTACACGCGT+AGG 0.682958 1_3:-2892957 None:intergenic
GAAGGTGAGGCTATCATACG+TGG 0.685255 1_3:+2892995 Msa0097080:CDS
AAGCATACCAACATTGTCAG+CGG 0.698333 1_3:-2892268 None:intergenic
TTCTGAGGATGGGTTCATGG+AGG 0.702330 1_3:+2893195 Msa0097080:CDS
TCGGCTGTGATGGAATACAA+AGG 0.710713 1_3:+2893037 Msa0097080:CDS
GGTACACAAGTATCTTAGGG+GGG 0.718324 1_3:-2893518 None:intergenic
AACAAACTGTGATACCCAAG+GGG 0.729748 1_3:-2891243 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTGTTATTGA+AGG + chr1_3:2891749-2891768 Msa0097080:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr1_3:2892111-2892130 Msa0097080:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr1_3:2893329-2893348 Msa0097080:three_prime_UTR 10.0%
!!! TTATTTATTTTTGTTATTGA+AGG + chr1_3:2891749-2891768 Msa0097080:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr1_3:2892111-2892130 Msa0097080:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr1_3:2893329-2893348 Msa0097080:three_prime_UTR 10.0%
!!! AATATATTTTAACTATTCCA+AGG + chr1_3:2891700-2891719 Msa0097080:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr1_3:2892110-2892129 Msa0097080:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr1_3:2892212-2892231 Msa0097080:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr1_3:2892213-2892232 Msa0097080:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr1_3:2892355-2892374 Msa0097080:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr1_3:2892444-2892463 Msa0097080:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr1_3:2892646-2892665 Msa0097080:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG - chr1_3:2893306-2893325 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr1_3:2893328-2893347 Msa0097080:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr1_3:2893415-2893434 Msa0097080:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr1_3:2893416-2893435 Msa0097080:three_prime_UTR 15.0%
!!! AATATATTTTAACTATTCCA+AGG + chr1_3:2891700-2891719 Msa0097080:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr1_3:2892110-2892129 Msa0097080:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr1_3:2892212-2892231 Msa0097080:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr1_3:2892213-2892232 Msa0097080:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr1_3:2892355-2892374 Msa0097080:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr1_3:2892444-2892463 Msa0097080:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr1_3:2892646-2892665 Msa0097080:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG - chr1_3:2893306-2893325 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr1_3:2893328-2893347 Msa0097080:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr1_3:2893415-2893434 Msa0097080:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr1_3:2893416-2893435 Msa0097080:three_prime_UTR 15.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr1_3:2892071-2892090 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr1_3:2892115-2892134 Msa0097080:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr1_3:2892328-2892347 Msa0097080:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr1_3:2892348-2892367 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr1_3:2892356-2892375 Msa0097080:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr1_3:2892443-2892462 Msa0097080:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr1_3:2892560-2892579 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr1_3:2893336-2893355 Msa0097080:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr1_3:2893337-2893356 Msa0097080:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr1_3:2893471-2893490 Msa0097080:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr1_3:2893488-2893507 Msa0097080:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr1_3:2893542-2893561 None:intergenic 20.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr1_3:2892071-2892090 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr1_3:2892115-2892134 Msa0097080:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr1_3:2892328-2892347 Msa0097080:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr1_3:2892348-2892367 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr1_3:2892356-2892375 Msa0097080:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr1_3:2892443-2892462 Msa0097080:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr1_3:2892560-2892579 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr1_3:2893336-2893355 Msa0097080:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr1_3:2893337-2893356 Msa0097080:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr1_3:2893471-2893490 Msa0097080:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr1_3:2893488-2893507 Msa0097080:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr1_3:2893542-2893561 None:intergenic 20.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr1_3:2891276-2891295 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr1_3:2891682-2891701 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr1_3:2891707-2891726 Msa0097080:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr1_3:2891754-2891773 Msa0097080:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr1_3:2891755-2891774 Msa0097080:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr1_3:2891907-2891926 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr1_3:2891908-2891927 Msa0097080:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr1_3:2892046-2892065 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr1_3:2892421-2892440 Msa0097080:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr1_3:2892422-2892441 Msa0097080:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr1_3:2892489-2892508 Msa0097080:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr1_3:2892516-2892535 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr1_3:2892903-2892922 Msa0097080:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr1_3:2893084-2893103 Msa0097080:CDS 25.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr1_3:2891276-2891295 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr1_3:2891682-2891701 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr1_3:2891707-2891726 Msa0097080:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr1_3:2891754-2891773 Msa0097080:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr1_3:2891755-2891774 Msa0097080:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr1_3:2891907-2891926 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr1_3:2891908-2891927 Msa0097080:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr1_3:2892046-2892065 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr1_3:2892421-2892440 Msa0097080:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr1_3:2892422-2892441 Msa0097080:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr1_3:2892489-2892508 Msa0097080:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr1_3:2892516-2892535 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr1_3:2892903-2892922 Msa0097080:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr1_3:2893084-2893103 Msa0097080:CDS 25.0%
TCAATAACAAAAACACCGTA+AGG + chr1_3:2891280-2891299 Msa0097080:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr1_3:2891281-2891300 Msa0097080:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr1_3:2891610-2891629 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr1_3:2891636-2891655 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr1_3:2891649-2891668 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr1_3:2891785-2891804 Msa0097080:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr1_3:2891957-2891976 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr1_3:2891957-2891976 Msa0097080:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr1_3:2892062-2892081 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr1_3:2892121-2892140 Msa0097080:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr1_3:2892299-2892318 Msa0097080:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr1_3:2892364-2892383 Msa0097080:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr1_3:2892365-2892384 Msa0097080:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr1_3:2892394-2892413 Msa0097080:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr1_3:2892595-2892614 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr1_3:2892788-2892807 Msa0097080:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr1_3:2893091-2893110 Msa0097080:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr1_3:2893340-2893359 Msa0097080:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr1_3:2893341-2893360 Msa0097080:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr1_3:2893381-2893400 Msa0097080:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr1_3:2893408-2893427 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr1_3:2893409-2893428 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr1_3:2893524-2893543 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr1_3:2893525-2893544 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr1_3:2893590-2893609 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr1_3:2893591-2893610 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr1_3:2893592-2893611 None:intergenic 30.0%
TCAATAACAAAAACACCGTA+AGG + chr1_3:2891280-2891299 Msa0097080:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr1_3:2891281-2891300 Msa0097080:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr1_3:2891610-2891629 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr1_3:2891636-2891655 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr1_3:2891649-2891668 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr1_3:2891785-2891804 Msa0097080:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr1_3:2891957-2891976 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr1_3:2891957-2891976 Msa0097080:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr1_3:2892062-2892081 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr1_3:2892121-2892140 Msa0097080:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr1_3:2892299-2892318 Msa0097080:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr1_3:2892364-2892383 Msa0097080:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr1_3:2892365-2892384 Msa0097080:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr1_3:2892394-2892413 Msa0097080:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr1_3:2892595-2892614 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr1_3:2892788-2892807 Msa0097080:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr1_3:2893091-2893110 Msa0097080:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr1_3:2893340-2893359 Msa0097080:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr1_3:2893341-2893360 Msa0097080:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr1_3:2893381-2893400 Msa0097080:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr1_3:2893408-2893427 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr1_3:2893409-2893428 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr1_3:2893524-2893543 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr1_3:2893525-2893544 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr1_3:2893590-2893609 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr1_3:2893591-2893610 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr1_3:2893592-2893611 None:intergenic 30.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr1_3:2891225-2891244 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr1_3:2891318-2891337 Msa0097080:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr1_3:2891415-2891434 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr1_3:2891531-2891550 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr1_3:2891558-2891577 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr1_3:2891559-2891578 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr1_3:2891575-2891594 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr1_3:2891589-2891608 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr1_3:2891601-2891620 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr1_3:2891607-2891626 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr1_3:2891607-2891626 Msa0097080:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr1_3:2891616-2891635 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr1_3:2891710-2891729 Msa0097080:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr1_3:2891711-2891730 Msa0097080:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr1_3:2891786-2891805 Msa0097080:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr1_3:2891892-2891911 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr1_3:2891983-2892002 Msa0097080:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr1_3:2892218-2892237 Msa0097080:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr1_3:2892366-2892385 Msa0097080:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr1_3:2892393-2892412 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr1_3:2892393-2892412 Msa0097080:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr1_3:2892740-2892759 Msa0097080:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr1_3:2892797-2892816 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr1_3:2892899-2892918 Msa0097080:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr1_3:2892908-2892927 Msa0097080:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr1_3:2893124-2893143 Msa0097080:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr1_3:2893139-2893158 Msa0097080:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr1_3:2893154-2893173 Msa0097080:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr1_3:2893164-2893183 Msa0097080:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr1_3:2893165-2893184 Msa0097080:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr1_3:2893278-2893297 Msa0097080:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr1_3:2893279-2893298 Msa0097080:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr1_3:2893380-2893399 Msa0097080:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr1_3:2893523-2893542 None:intergenic 35.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr1_3:2891225-2891244 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr1_3:2891318-2891337 Msa0097080:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr1_3:2891415-2891434 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr1_3:2891531-2891550 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr1_3:2891558-2891577 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr1_3:2891559-2891578 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr1_3:2891575-2891594 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr1_3:2891589-2891608 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr1_3:2891601-2891620 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr1_3:2891607-2891626 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr1_3:2891607-2891626 Msa0097080:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr1_3:2891616-2891635 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr1_3:2891710-2891729 Msa0097080:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr1_3:2891711-2891730 Msa0097080:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr1_3:2891786-2891805 Msa0097080:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr1_3:2891892-2891911 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr1_3:2891983-2892002 Msa0097080:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr1_3:2892218-2892237 Msa0097080:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr1_3:2892366-2892385 Msa0097080:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr1_3:2892393-2892412 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr1_3:2892393-2892412 Msa0097080:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr1_3:2892740-2892759 Msa0097080:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr1_3:2892797-2892816 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr1_3:2892899-2892918 Msa0097080:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr1_3:2892908-2892927 Msa0097080:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr1_3:2893124-2893143 Msa0097080:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr1_3:2893139-2893158 Msa0097080:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr1_3:2893154-2893173 Msa0097080:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr1_3:2893164-2893183 Msa0097080:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr1_3:2893165-2893184 Msa0097080:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr1_3:2893278-2893297 Msa0097080:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr1_3:2893279-2893298 Msa0097080:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr1_3:2893380-2893399 Msa0097080:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr1_3:2893523-2893542 None:intergenic 35.0%
AACAAACTGTGATACCCAAG+GGG - chr1_3:2891246-2891265 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG - chr1_3:2891247-2891266 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr1_3:2891298-2891317 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr1_3:2891317-2891336 Msa0097080:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr1_3:2891392-2891411 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr1_3:2891423-2891442 Msa0097080:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr1_3:2891466-2891485 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr1_3:2891478-2891497 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr1_3:2891476-2891495 Msa0097080:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr1_3:2891590-2891609 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr1_3:2891712-2891731 Msa0097080:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr1_3:2891720-2891739 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr1_3:2891761-2891780 Msa0097080:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr1_3:2891921-2891940 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr1_3:2892030-2892049 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr1_3:2892134-2892153 Msa0097080:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr1_3:2892261-2892280 Msa0097080:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr1_3:2892271-2892290 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr1_3:2892275-2892294 Msa0097080:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr1_3:2892729-2892748 Msa0097080:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr1_3:2892926-2892945 Msa0097080:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr1_3:2893043-2893062 Msa0097080:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr1_3:2893166-2893185 Msa0097080:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr1_3:2893207-2893226 Msa0097080:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr1_3:2893287-2893306 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr1_3:2893522-2893541 None:intergenic 40.0%
AACAAACTGTGATACCCAAG+GGG - chr1_3:2891246-2891265 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG - chr1_3:2891247-2891266 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr1_3:2891298-2891317 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr1_3:2891317-2891336 Msa0097080:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr1_3:2891392-2891411 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr1_3:2891423-2891442 Msa0097080:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr1_3:2891466-2891485 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr1_3:2891478-2891497 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr1_3:2891476-2891495 Msa0097080:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr1_3:2891590-2891609 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr1_3:2891712-2891731 Msa0097080:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr1_3:2891720-2891739 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr1_3:2891761-2891780 Msa0097080:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr1_3:2891921-2891940 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr1_3:2892030-2892049 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr1_3:2892134-2892153 Msa0097080:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr1_3:2892261-2892280 Msa0097080:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr1_3:2892271-2892290 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr1_3:2892275-2892294 Msa0097080:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr1_3:2892729-2892748 Msa0097080:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr1_3:2892926-2892945 Msa0097080:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr1_3:2893043-2893062 Msa0097080:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr1_3:2893166-2893185 Msa0097080:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr1_3:2893207-2893226 Msa0097080:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr1_3:2893287-2893306 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr1_3:2893522-2893541 None:intergenic 40.0%
TTGCCTATAAAAACGCCCCT+TGG + chr1_3:2891228-2891247 Msa0097080:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr1_3:2891229-2891248 Msa0097080:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr1_3:2891234-2891253 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG - chr1_3:2891248-2891267 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr1_3:2891321-2891340 Msa0097080:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr1_3:2891326-2891345 Msa0097080:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr1_3:2891383-2891402 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr1_3:2891384-2891403 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr1_3:2891393-2891412 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr1_3:2891551-2891570 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr1_3:2891767-2891786 Msa0097080:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr1_3:2891795-2891814 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr1_3:2891792-2891811 Msa0097080:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr1_3:2891827-2891846 Msa0097080:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr1_3:2891830-2891849 Msa0097080:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr1_3:2891842-2891861 Msa0097080:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr1_3:2891846-2891865 Msa0097080:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr1_3:2891864-2891883 Msa0097080:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr1_3:2891923-2891942 Msa0097080:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr1_3:2891964-2891983 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr1_3:2892031-2892050 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr1_3:2892221-2892240 Msa0097080:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr1_3:2892281-2892300 Msa0097080:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr1_3:2892758-2892777 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr1_3:2892755-2892774 Msa0097080:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr1_3:2892993-2893012 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr1_3:2893037-2893056 Msa0097080:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr1_3:2893060-2893079 Msa0097080:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr1_3:2893100-2893119 Msa0097080:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr1_3:2893206-2893225 Msa0097080:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr1_3:2893521-2893540 None:intergenic 45.0%
TTGCCTATAAAAACGCCCCT+TGG + chr1_3:2891228-2891247 Msa0097080:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr1_3:2891229-2891248 Msa0097080:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr1_3:2891234-2891253 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG - chr1_3:2891248-2891267 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr1_3:2891321-2891340 Msa0097080:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr1_3:2891326-2891345 Msa0097080:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr1_3:2891383-2891402 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr1_3:2891384-2891403 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr1_3:2891393-2891412 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr1_3:2891551-2891570 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr1_3:2891767-2891786 Msa0097080:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr1_3:2891795-2891814 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr1_3:2891792-2891811 Msa0097080:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr1_3:2891827-2891846 Msa0097080:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr1_3:2891830-2891849 Msa0097080:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr1_3:2891842-2891861 Msa0097080:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr1_3:2891846-2891865 Msa0097080:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr1_3:2891864-2891883 Msa0097080:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr1_3:2891923-2891942 Msa0097080:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr1_3:2891964-2891983 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr1_3:2892031-2892050 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr1_3:2892221-2892240 Msa0097080:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr1_3:2892281-2892300 Msa0097080:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr1_3:2892758-2892777 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr1_3:2892755-2892774 Msa0097080:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr1_3:2892993-2893012 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr1_3:2893037-2893056 Msa0097080:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr1_3:2893060-2893079 Msa0097080:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr1_3:2893100-2893119 Msa0097080:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr1_3:2893206-2893225 Msa0097080:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr1_3:2893521-2893540 None:intergenic 45.0%
!!! TTTTTTTTTTACAAAAAAAT+AGG + chr1_3:2892089-2892108 Msa0097080:intron 5.0%
!! TTCAATTATTAATTAATTAT+TGG + chr1_3:2892613-2892632 Msa0097080:intron 5.0%
!!! TTTTTTTTTTACAAAAAAAT+AGG + chr1_3:2892089-2892108 Msa0097080:intron 5.0%
!! TTCAATTATTAATTAATTAT+TGG + chr1_3:2892613-2892632 Msa0097080:intron 5.0%
GAGAGAGAAACATGGGTGGT+TGG + chr1_3:2891325-2891344 Msa0097080:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr1_3:2891543-2891562 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr1_3:2891818-2891837 Msa0097080:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr1_3:2891823-2891842 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr1_3:2892024-2892043 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr1_3:2892227-2892246 Msa0097080:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr1_3:2892818-2892837 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG + chr1_3:2892820-2892839 Msa0097080:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr1_3:2892852-2892871 Msa0097080:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr1_3:2892932-2892951 Msa0097080:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr1_3:2892933-2892952 Msa0097080:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr1_3:2892995-2893014 Msa0097080:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr1_3:2893003-2893022 Msa0097080:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr1_3:2893180-2893199 Msa0097080:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr1_3:2893192-2893211 Msa0097080:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr1_3:2893195-2893214 Msa0097080:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr1_3:2893387-2893406 Msa0097080:three_prime_UTR 50.0%
GAGAGAGAAACATGGGTGGT+TGG + chr1_3:2891325-2891344 Msa0097080:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr1_3:2891543-2891562 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr1_3:2891818-2891837 Msa0097080:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr1_3:2891823-2891842 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr1_3:2892024-2892043 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr1_3:2892227-2892246 Msa0097080:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr1_3:2892818-2892837 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG + chr1_3:2892820-2892839 Msa0097080:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr1_3:2892852-2892871 Msa0097080:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr1_3:2892932-2892951 Msa0097080:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr1_3:2892933-2892952 Msa0097080:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr1_3:2892995-2893014 Msa0097080:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr1_3:2893003-2893022 Msa0097080:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr1_3:2893180-2893199 Msa0097080:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr1_3:2893192-2893211 Msa0097080:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr1_3:2893195-2893214 Msa0097080:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr1_3:2893387-2893406 Msa0097080:three_prime_UTR 50.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr1_3:2891342-2891361 Msa0097080:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr1_3:2891345-2891364 Msa0097080:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr1_3:2891351-2891370 Msa0097080:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr1_3:2891813-2891832 Msa0097080:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr1_3:2891824-2891843 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr1_3:2891821-2891840 Msa0097080:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr1_3:2891873-2891892 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG + chr1_3:2892824-2892843 Msa0097080:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG + chr1_3:2892825-2892844 Msa0097080:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr1_3:2892848-2892867 Msa0097080:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr1_3:2892865-2892884 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr1_3:2892941-2892960 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr1_3:2892954-2892973 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr1_3:2892956-2892975 Msa0097080:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr1_3:2893184-2893203 Msa0097080:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr1_3:2893185-2893204 Msa0097080:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr1_3:2893199-2893218 Msa0097080:CDS 55.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr1_3:2891342-2891361 Msa0097080:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr1_3:2891345-2891364 Msa0097080:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr1_3:2891351-2891370 Msa0097080:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr1_3:2891813-2891832 Msa0097080:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr1_3:2891824-2891843 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr1_3:2891821-2891840 Msa0097080:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr1_3:2891873-2891892 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG + chr1_3:2892824-2892843 Msa0097080:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG + chr1_3:2892825-2892844 Msa0097080:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr1_3:2892848-2892867 Msa0097080:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr1_3:2892865-2892884 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr1_3:2892941-2892960 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr1_3:2892954-2892973 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr1_3:2892956-2892975 Msa0097080:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr1_3:2893184-2893203 Msa0097080:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr1_3:2893185-2893204 Msa0097080:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr1_3:2893199-2893218 Msa0097080:CDS 55.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr1_3:2891876-2891895 Msa0097080:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG - chr1_3:2892836-2892855 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG + chr1_3:2892838-2892857 Msa0097080:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr1_3:2892875-2892894 Msa0097080:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr1_3:2892888-2892907 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr1_3:2892960-2892979 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr1_3:2892971-2892990 Msa0097080:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr1_3:2892982-2893001 Msa0097080:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr1_3:2893018-2893037 Msa0097080:CDS 60.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr1_3:2891876-2891895 Msa0097080:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG - chr1_3:2892836-2892855 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG + chr1_3:2892838-2892857 Msa0097080:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr1_3:2892875-2892894 Msa0097080:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr1_3:2892888-2892907 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr1_3:2892960-2892979 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr1_3:2892971-2892990 Msa0097080:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr1_3:2892982-2893001 Msa0097080:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr1_3:2893018-2893037 Msa0097080:CDS 60.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr1_3:2891806-2891825 Msa0097080:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr1_3:2892878-2892897 Msa0097080:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr1_3:2892879-2892898 Msa0097080:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr1_3:2892973-2892992 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr1_3:2892977-2892996 Msa0097080:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr1_3:2893012-2893031 Msa0097080:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr1_3:2893027-2893046 Msa0097080:CDS 65.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr1_3:2891806-2891825 Msa0097080:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr1_3:2892878-2892897 Msa0097080:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr1_3:2892879-2892898 Msa0097080:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr1_3:2892973-2892992 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr1_3:2892977-2892996 Msa0097080:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr1_3:2893012-2893031 Msa0097080:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr1_3:2893027-2893046 Msa0097080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2891209 2893625 2891209 ID=Msa0097080;Name=Msa0097080
chr1_3 mRNA 2891209 2893625 2891209 ID=Msa0097080-mRNA-1;Parent=Msa0097080;Name=Msa0097080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|1|1|4|391|325
chr1_3 exon 2891209 2891497 2891209 ID=Msa0097080-mRNA-1:exon:798;Parent=Msa0097080-mRNA-1
chr1_3 exon 2891771 2892004 2891771 ID=Msa0097080-mRNA-1:exon:799;Parent=Msa0097080-mRNA-1
chr1_3 exon 2892234 2892320 2892234 ID=Msa0097080-mRNA-1:exon:800;Parent=Msa0097080-mRNA-1
chr1_3 exon 2892740 2893625 2892740 ID=Msa0097080-mRNA-1:exon:801;Parent=Msa0097080-mRNA-1
chr1_3 five_prime_UTR 2891209 2891335 2891209 ID=Msa0097080-mRNA-1:five_prime_utr;Parent=Msa0097080-mRNA-1
chr1_3 CDS 2891336 2891497 2891336 ID=Msa0097080-mRNA-1:cds;Parent=Msa0097080-mRNA-1
chr1_3 CDS 2891771 2892004 2891771 ID=Msa0097080-mRNA-1:cds;Parent=Msa0097080-mRNA-1
chr1_3 CDS 2892234 2892320 2892234 ID=Msa0097080-mRNA-1:cds;Parent=Msa0097080-mRNA-1
chr1_3 CDS 2892740 2893234 2892740 ID=Msa0097080-mRNA-1:cds;Parent=Msa0097080-mRNA-1
chr1_3 three_prime_UTR 2893235 2893625 2893235 ID=Msa0097080-mRNA-1:three_prime_utr;Parent=Msa0097080-mRNA-1
Gene Sequence

>Msa0097080

ATGGGTGGTTGGGCAATTGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCTCTTCAACGTCAAGAAGAAGCCAAACAACTTCTTACTCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCTGCCATCGATGTTGTTGAACTTGTGGTGAGGGAATTGGAAACGGATCCATTATTCAATTCGGGTCGTGGATCTGCCCTGACGGAAAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGATGGACCAAAAAGACGATGCGGTGCCGTTTCAGGTTTAACCACAGTAAAAAATCCAATTTCACTGGCTCGTTTAGTCATGGATAAATCTCCTCATTCCTATCTTGCTTTTAACGGCGCTGAAGATTTTGCTAGACAACAGGGTGTGGAGGTTCTGGACAATGAGTACTTTATCACCGCTGACAATGTTGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGTTTGATTATCGGATTCCATCTGGATACGAAACATGTGGTGCAGCAGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGTGTCTACGCACCTGAAACGGTCGGGTGCGTAGTTGTGGACCGTGAAGGAAGGTGTGCTGCTGCCACGTCAACAGGCGGGCTAATGAACAAAATGATTGGTCGGATTGGTGACTCACCTTTGATAGGAGCCGGGACCTACGCGTGTAACCTTGCTGGCGTCTCATGCACCGGTGAAGGTGAGGCTATCATACGTGGCACTTTGGCGCGAGAGGTGTCGGCTGTGATGGAATACAAAGGTCTTGGTCTTCAAGAAGCAGTGGATTTTGTCATTAAGAATCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAGTAAAGGAGAAGTTGCTTATGGATTTAACTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTAG
Protein sequence

>Msa0097080

MGGWAIAVHGGAGVDPNLPLQRQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEDFARQQGVEVLDNEYFITADNVGMLKLAKEANTILFDYRIPSGYETCGAAVESPMKMNGLPMSVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACNLAGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKNRLDEGYAGLIAVSSKGEVAYGFNCNGMFRGCASEDGFMEVGIWE*