AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186630 MtrunA17_Chr1g0152931 100.000 325 0 0 1 325 1 325 0.0 662
Msa0186630 MtrunA17_Chr3g0134271 85.846 325 43 2 1 325 1 322 0.0 570
Msa0186630 MtrunA17_Chr1g0198911 83.385 325 49 1 1 325 1 320 0.0 552
Msa0186630 MtrunA17_Chr4g0061721 59.006 322 127 1 3 324 2 318 2.23e-132 379
Msa0186630 MtrunA17_Chr4g0061731 59.752 323 124 2 3 324 2 319 2.64e-132 379
Msa0186630 MtrunA17_Chr8g0349621 30.449 312 165 11 6 281 23 318 1.06e-22 97.4
Msa0186630 MtrunA17_Chr3g0079001 28.754 313 182 13 38 316 40 345 1.59e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186630 AT3G16150.1 84.615 325 50 0 1 325 1 325 0.0 566
Msa0186630 AT5G08100.1 57.492 327 121 4 1 324 1 312 3.12e-125 361
Msa0186630 AT5G08100.2 57.490 247 88 3 80 324 1 232 3.90e-94 279
Msa0186630 AT4G00590.1 27.187 320 179 8 6 285 15 320 1.68e-20 91.7

Find 116 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGATGCGGTGCCGTTTC+AGG 0.158496 2_1:+1378799 Msa0186630:CDS
GGTTCATGGAGGTTGGAATT+TGG 0.195033 2_1:+1380129 Msa0186630:CDS
AAAAGGTACACAAGTATCTT+AGG 0.208923 2_1:-1380445 None:intergenic
ACTACGCACCCGACCGTTTC+AGG 0.242289 2_1:-1379756 None:intergenic
GGATCTGCCCTGACGGAAAA+AGG 0.260928 2_1:+1378736 Msa0186630:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.262833 2_1:+1380130 Msa0186630:CDS
ACTAAACGAGCCAGTGAAAT+TGG 0.271206 2_1:-1378841 None:intergenic
GTTTCATTGCAACTTGCATT+AGG 0.285399 2_1:+1380303 Msa0186630:three_prime_UTR
TTAACTGCAATGGCATGTTT+AGG 0.291387 2_1:+1380087 Msa0186630:CDS
TTTGTAGGGTGTGGAGGTTC+TGG 0.300802 2_1:+1379150 Msa0186630:intron
AACGGATCCATTATTCAATT+CGG 0.328084 2_1:+1378708 Msa0186630:CDS
AGTAAAGGAGAAGTTGCTTA+TGG 0.336064 2_1:+1380062 Msa0186630:CDS
TAACTGCAATGGCATGTTTA+GGG 0.343986 2_1:+1380088 Msa0186630:CDS
GTTATTGAAGGTGAGGGAAT+TGG 0.347604 2_1:+1378684 Msa0186630:intron
TTTCATTGCAACTTGCATTA+GGG 0.350568 2_1:+1380304 Msa0186630:three_prime_UTR
CTTACTCGTGTTCTCAATCT+TGG 0.354252 2_1:+1378346 Msa0186630:CDS
TGTGCTGCTGCCACGTCAAC+AGG 0.356128 2_1:+1379798 Msa0186630:CDS
TGACGTTGAAGAGGGAGATT+AGG 0.362167 2_1:-1378304 None:intergenic
GTGTGCTGCAGTTTGATTAT+CGG 0.363877 2_1:+1379652 Msa0186630:intron
AACACGAGTAAGAAGTTGTT+TGG 0.379765 2_1:-1378335 None:intergenic
AACATCGATGGCAGAAAGAT+TGG 0.396249 2_1:-1378386 None:intergenic
ATTGCTGTGCATGGTGGTGC+TGG 0.397163 2_1:+1378274 Msa0186630:CDS
AGGGGATGTGCTTCTGAGGA+TGG 0.401581 2_1:+1380107 Msa0186630:CDS
ACGGATCCATTATTCAATTC+GGG 0.402987 2_1:+1378709 Msa0186630:CDS
TGCTTCTGAGGATGGGTTCA+TGG 0.405891 2_1:+1380115 Msa0186630:CDS
CCACGACCCGAATTGAATAA+TGG 0.409899 2_1:-1378715 None:intergenic
CTCATTGCTGTTTCTAGTAA+AGG 0.414337 2_1:+1380047 Msa0186630:CDS
TACTGTGGTTAAACCTGAAA+CGG 0.417200 2_1:-1378812 None:intergenic
TTTGATTATCGGATTCCATC+TGG 0.417677 2_1:+1379663 Msa0186630:CDS
TAATTATTTAGTTGTTTAAG+AGG 0.418424 2_1:+1380338 Msa0186630:three_prime_UTR
ATTGGTGACTCACCTTTGAT+AGG 0.420480 2_1:+1379849 Msa0186630:CDS
AGAGAGAAACATGGGTGGTT+GGG 0.423456 2_1:+1378249 Msa0186630:exon
CCATTATTCAATTCGGGTCG+TGG 0.423817 2_1:+1378715 Msa0186630:CDS
GGTTGGGCAATTGCTGTGCA+TGG 0.428468 2_1:+1378265 Msa0186630:CDS
CACTTTGGCGCGAGAGGTGT+CGG 0.430026 2_1:+1379941 Msa0186630:CDS
CTCTCTGAACTTTACCCTTA+CGG 0.430981 2_1:-1378218 None:intergenic
GGAAATGGAGGCTAGCATAA+TGG 0.434511 2_1:+1378765 Msa0186630:CDS
AAAGGTACACAAGTATCTTA+GGG 0.434945 2_1:-1380444 None:intergenic
GACGTTGAAGAGGGAGATTA+GGG 0.438575 2_1:-1378303 None:intergenic
ATTAAGAATCGTTTGGATGA+AGG 0.439748 2_1:+1380014 Msa0186630:CDS
GAGTGTCTACGCACCTGAAA+CGG 0.454306 2_1:+1379743 Msa0186630:CDS
AAAGGAAGCAAATACAATCT+TGG 0.457652 2_1:+1379222 Msa0186630:CDS
GGGGATGTGCTTCTGAGGAT+GGG 0.460240 2_1:+1380108 Msa0186630:CDS
CAGCAGCACACCTTCCTTCA+CGG 0.468263 2_1:-1379785 None:intergenic
TGCAACTTGCATTAGGGTCC+CGG 0.468325 2_1:+1380310 Msa0186630:three_prime_UTR
TCAGGTGCGTAGACACTCAT+TGG 0.468761 2_1:-1379738 None:intergenic
GACTCACCTTTGATAGGAGC+CGG 0.472240 2_1:+1379855 Msa0186630:CDS
TAGTTGCCAGTGAAAATTGT+TGG 0.476331 2_1:+1380201 Msa0186630:three_prime_UTR
AGAAACTAAATTAAAAGAAA+AGG 0.480069 2_1:-1380226 None:intergenic
ACCTACGCGTGTAACCTTGC+TGG 0.480120 2_1:+1379879 Msa0186630:CDS
GAGGATGGGTTCATGGAGGT+TGG 0.480884 2_1:+1380122 Msa0186630:CDS
AACGGTCGGGTGCGTAGTTG+TGG 0.481328 2_1:+1379761 Msa0186630:CDS
AGCGCCGTTAAAAGCAAGAT+AGG 0.481695 2_1:-1378884 None:intergenic
AGTTGCCAGTGAAAATTGTT+GGG 0.481818 2_1:+1380202 Msa0186630:three_prime_UTR
GCTTATGGATTTAACTGCAA+TGG 0.484263 2_1:+1380077 Msa0186630:CDS
TTCACTGGCTCGTTTAGTCA+TGG 0.486469 2_1:+1378846 Msa0186630:CDS
AAGGTTACACGCGTAGGTCC+CGG 0.486913 2_1:-1379874 None:intergenic
GAAAGTCCAATGAAAATGAA+TGG 0.491181 2_1:+1379711 Msa0186630:CDS
TATGATAGCCTCACCTTCAC+CGG 0.497356 2_1:-1379913 None:intergenic
CTTCTTCTTGACGTTGAAGA+GGG 0.497744 2_1:-1378312 None:intergenic
GAGTTTGAGAGAGAGAAACA+TGG 0.504074 2_1:+1378240 Msa0186630:exon
CGTTTGGATGAAGGATATGC+TGG 0.504298 2_1:+1380023 Msa0186630:CDS
GTGATGGAATACAAAGGTCT+TGG 0.504451 2_1:+1379966 Msa0186630:CDS
AACAAAATGATTGGTCGGAT+TGG 0.504757 2_1:+1379831 Msa0186630:CDS
GAGAGAGAAACATGGGTGGT+TGG 0.505927 2_1:+1378248 Msa0186630:exon
CAACTAAATAATTACAGCAC+CGG 0.506844 2_1:-1380329 None:intergenic
GGGCTAATGAACAAAATGAT+TGG 0.512413 2_1:+1379822 Msa0186630:CDS
GCTTCTTCTTGACGTTGAAG+AGG 0.520285 2_1:-1378313 None:intergenic
GCGAGAGGTGTCGGCTGTGA+TGG 0.520900 2_1:+1379950 Msa0186630:CDS
GGCGTCTCATGCACCGGTGA+AGG 0.524434 2_1:+1379900 Msa0186630:CDS
AATTATTTAGTTGTTTAAGA+GGG 0.534165 2_1:+1380339 Msa0186630:three_prime_UTR
GGCTATCATACGTGGCACTT+TGG 0.535143 2_1:+1379926 Msa0186630:CDS
GCTGCTGCCACGTCAACAGG+CGG 0.537860 2_1:+1379801 Msa0186630:CDS
CTTGCTGGCGTCTCATGCAC+CGG 0.541455 2_1:+1379894 Msa0186630:CDS
AGTTTGAGAGAGAGAAACAT+GGG 0.545658 2_1:+1378241 Msa0186630:exon
CATTAGCCCGCCTGTTGACG+TGG 0.549451 2_1:-1379808 None:intergenic
TCTACGCACCTGAAACGGTC+GGG 0.555661 2_1:+1379748 Msa0186630:CDS
CTGCTGCCACGTCAACAGGC+GGG 0.561806 2_1:+1379802 Msa0186630:CDS
TAATGAACAAAATGATTGGT+CGG 0.563124 2_1:+1379826 Msa0186630:CDS
GAAGGTGAGGGAATTGGAAA+CGG 0.565330 2_1:+1378690 Msa0186630:intron
CAATGTTGGTATGCTTAAGC+TGG 0.567336 2_1:+1379198 Msa0186630:CDS
GGGTCGTGGATCTGCCCTGA+CGG 0.570628 2_1:+1378729 Msa0186630:CDS
GTTTAGGGGATGTGCTTCTG+AGG 0.570942 2_1:+1380103 Msa0186630:CDS
ACGTGGCACTTTGGCGCGAG+AGG 0.574745 2_1:+1379935 Msa0186630:CDS
TAGGTCCCGGCTCCTATCAA+AGG 0.574816 2_1:-1379861 None:intergenic
TTTATCACCGCTGACAATGT+TGG 0.576194 2_1:+1379184 Msa0186630:CDS
AACTAAATAATTACAGCACC+GGG 0.578336 2_1:-1380328 None:intergenic
CCACATGTTTCGTATCCAGA+TGG 0.581145 2_1:-1379678 None:intergenic
AACTGCAATGGCATGTTTAG+GGG 0.582673 2_1:+1380089 Msa0186630:CDS
CATCGATGTTGTTGAACTTG+TGG 0.587378 2_1:+1378399 Msa0186630:CDS
CTCATGCACCGGTGAAGGTG+AGG 0.595337 2_1:+1379905 Msa0186630:CDS
TCTTGGTCTTCAAGAAGCAG+TGG 0.595757 2_1:+1379983 Msa0186630:CDS
ATGGAGGCTAGCATAATGGA+TGG 0.598729 2_1:+1378769 Msa0186630:CDS
ACTCACCTTTGATAGGAGCC+GGG 0.601444 2_1:+1379856 Msa0186630:CDS
TGCGTAGTTGTGGACCGTGA+AGG 0.611085 2_1:+1379771 Msa0186630:CDS
CACAAGTTCAACAACATCGA+TGG 0.615685 2_1:-1378398 None:intergenic
TTGAGAGAGAGAAACATGGG+TGG 0.619739 2_1:+1378244 Msa0186630:exon
AAAAGGAACGGTGGAAATGG+AGG 0.622339 2_1:+1378753 Msa0186630:CDS
GTCTACGCACCTGAAACGGT+CGG 0.626279 2_1:+1379747 Msa0186630:CDS
GCAACAAACTGTGATACCCA+AGG 0.628099 2_1:-1378168 None:intergenic
TGGTATGCTTAAGCTGGCAA+AGG 0.632666 2_1:+1379204 Msa0186630:CDS
CAACAAACTGTGATACCCAA+GGG 0.636582 2_1:-1378167 None:intergenic
TTAAAAGCAAGATAGGAATG+AGG 0.636686 2_1:-1378877 None:intergenic
AGGTACACAAGTATCTTAGG+GGG 0.644899 2_1:-1380442 None:intergenic
CGGTGCATGAGACGCCAGCA+AGG 0.648195 2_1:-1379893 None:intergenic
AAGGTACACAAGTATCTTAG+GGG 0.653273 2_1:-1380443 None:intergenic
TGGGCAATTGCTGTGCATGG+TGG 0.661106 2_1:+1378268 Msa0186630:CDS
TAGTTGTGGACCGTGAAGGA+AGG 0.661356 2_1:+1379775 Msa0186630:CDS
CCATCTGGATACGAAACATG+TGG 0.678131 2_1:+1379678 Msa0186630:CDS
GCCAGCAAGGTTACACGCGT+AGG 0.682958 2_1:-1379880 None:intergenic
GAAGGTGAGGCTATCATACG+TGG 0.685255 2_1:+1379918 Msa0186630:CDS
AAGCATACCAACATTGTCAG+CGG 0.698333 2_1:-1379191 None:intergenic
TTCTGAGGATGGGTTCATGG+AGG 0.702330 2_1:+1380118 Msa0186630:CDS
TCGGCTGTGATGGAATACAA+AGG 0.710713 2_1:+1379960 Msa0186630:CDS
GGTACACAAGTATCTTAGGG+GGG 0.718324 2_1:-1380441 None:intergenic
AACAAACTGTGATACCCAAG+GGG 0.729748 2_1:-1378166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTGTTATTGA+AGG + chr2_1:1378672-1378691 Msa0186630:intron 10.0%
!!! TTTGTTTTTTACAAAAAAAT+AGG + chr2_1:1379012-1379031 Msa0186630:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr2_1:1379034-1379053 Msa0186630:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr2_1:1380252-1380271 Msa0186630:three_prime_UTR 10.0%
!!! TTATTTATTTTTGTTATTGA+AGG + chr2_1:1378672-1378691 Msa0186630:intron 10.0%
!!! TTTGTTTTTTACAAAAAAAT+AGG + chr2_1:1379012-1379031 Msa0186630:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr2_1:1379034-1379053 Msa0186630:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr2_1:1380252-1380271 Msa0186630:three_prime_UTR 10.0%
!!! AATATATTTTAACTATTCCA+AGG + chr2_1:1378623-1378642 Msa0186630:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr2_1:1379033-1379052 Msa0186630:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr2_1:1379135-1379154 Msa0186630:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr2_1:1379136-1379155 Msa0186630:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr2_1:1379278-1379297 Msa0186630:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr2_1:1379367-1379386 Msa0186630:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr2_1:1379569-1379588 Msa0186630:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG - chr2_1:1380229-1380248 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr2_1:1380251-1380270 Msa0186630:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr2_1:1380338-1380357 Msa0186630:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr2_1:1380339-1380358 Msa0186630:three_prime_UTR 15.0%
!!! AATATATTTTAACTATTCCA+AGG + chr2_1:1378623-1378642 Msa0186630:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr2_1:1379033-1379052 Msa0186630:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr2_1:1379135-1379154 Msa0186630:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr2_1:1379136-1379155 Msa0186630:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr2_1:1379278-1379297 Msa0186630:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr2_1:1379367-1379386 Msa0186630:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr2_1:1379569-1379588 Msa0186630:intron 15.0%
!! AGAAACTAAATTAAAAGAAA+AGG - chr2_1:1380229-1380248 None:intergenic 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr2_1:1380251-1380270 Msa0186630:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr2_1:1380338-1380357 Msa0186630:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr2_1:1380339-1380358 Msa0186630:three_prime_UTR 15.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr2_1:1378994-1379013 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr2_1:1379038-1379057 Msa0186630:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr2_1:1379251-1379270 Msa0186630:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr2_1:1379271-1379290 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr2_1:1379279-1379298 Msa0186630:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr2_1:1379366-1379385 Msa0186630:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr2_1:1379483-1379502 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr2_1:1380259-1380278 Msa0186630:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr2_1:1380260-1380279 Msa0186630:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr2_1:1380394-1380413 Msa0186630:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr2_1:1380411-1380430 Msa0186630:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr2_1:1380465-1380484 None:intergenic 20.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr2_1:1378994-1379013 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr2_1:1379038-1379057 Msa0186630:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr2_1:1379251-1379270 Msa0186630:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr2_1:1379271-1379290 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr2_1:1379279-1379298 Msa0186630:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr2_1:1379366-1379385 Msa0186630:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr2_1:1379483-1379502 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr2_1:1380259-1380278 Msa0186630:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr2_1:1380260-1380279 Msa0186630:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr2_1:1380394-1380413 Msa0186630:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr2_1:1380411-1380430 Msa0186630:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr2_1:1380465-1380484 None:intergenic 20.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr2_1:1378199-1378218 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr2_1:1378605-1378624 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr2_1:1378630-1378649 Msa0186630:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr2_1:1378677-1378696 Msa0186630:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr2_1:1378678-1378697 Msa0186630:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr2_1:1378830-1378849 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr2_1:1378831-1378850 Msa0186630:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr2_1:1378969-1378988 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr2_1:1379344-1379363 Msa0186630:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr2_1:1379345-1379364 Msa0186630:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr2_1:1379412-1379431 Msa0186630:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr2_1:1379439-1379458 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr2_1:1379826-1379845 Msa0186630:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr2_1:1380007-1380026 Msa0186630:CDS 25.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr2_1:1378199-1378218 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr2_1:1378605-1378624 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr2_1:1378630-1378649 Msa0186630:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr2_1:1378677-1378696 Msa0186630:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr2_1:1378678-1378697 Msa0186630:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr2_1:1378830-1378849 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr2_1:1378831-1378850 Msa0186630:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr2_1:1378969-1378988 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr2_1:1379344-1379363 Msa0186630:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr2_1:1379345-1379364 Msa0186630:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr2_1:1379412-1379431 Msa0186630:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr2_1:1379439-1379458 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr2_1:1379826-1379845 Msa0186630:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr2_1:1380007-1380026 Msa0186630:CDS 25.0%
TCAATAACAAAAACACCGTA+AGG + chr2_1:1378203-1378222 Msa0186630:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr2_1:1378204-1378223 Msa0186630:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr2_1:1378533-1378552 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr2_1:1378559-1378578 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr2_1:1378572-1378591 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr2_1:1378708-1378727 Msa0186630:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr2_1:1378880-1378899 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr2_1:1378880-1378899 Msa0186630:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr2_1:1378985-1379004 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr2_1:1379044-1379063 Msa0186630:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr2_1:1379222-1379241 Msa0186630:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr2_1:1379287-1379306 Msa0186630:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr2_1:1379288-1379307 Msa0186630:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr2_1:1379317-1379336 Msa0186630:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr2_1:1379518-1379537 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr2_1:1379711-1379730 Msa0186630:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr2_1:1380014-1380033 Msa0186630:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr2_1:1380263-1380282 Msa0186630:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr2_1:1380264-1380283 Msa0186630:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr2_1:1380304-1380323 Msa0186630:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr2_1:1380331-1380350 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr2_1:1380332-1380351 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr2_1:1380447-1380466 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr2_1:1380448-1380467 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr2_1:1380513-1380532 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr2_1:1380514-1380533 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr2_1:1380515-1380534 None:intergenic 30.0%
TCAATAACAAAAACACCGTA+AGG + chr2_1:1378203-1378222 Msa0186630:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr2_1:1378204-1378223 Msa0186630:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr2_1:1378533-1378552 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr2_1:1378559-1378578 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr2_1:1378572-1378591 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr2_1:1378708-1378727 Msa0186630:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr2_1:1378880-1378899 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr2_1:1378880-1378899 Msa0186630:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr2_1:1378985-1379004 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr2_1:1379044-1379063 Msa0186630:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr2_1:1379222-1379241 Msa0186630:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr2_1:1379287-1379306 Msa0186630:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr2_1:1379288-1379307 Msa0186630:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr2_1:1379317-1379336 Msa0186630:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr2_1:1379518-1379537 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr2_1:1379711-1379730 Msa0186630:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr2_1:1380014-1380033 Msa0186630:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr2_1:1380263-1380282 Msa0186630:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr2_1:1380264-1380283 Msa0186630:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr2_1:1380304-1380323 Msa0186630:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr2_1:1380331-1380350 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr2_1:1380332-1380351 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr2_1:1380447-1380466 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr2_1:1380448-1380467 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr2_1:1380513-1380532 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr2_1:1380514-1380533 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr2_1:1380515-1380534 None:intergenic 30.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr2_1:1378148-1378167 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr2_1:1378241-1378260 Msa0186630:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr2_1:1378338-1378357 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr2_1:1378454-1378473 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr2_1:1378481-1378500 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr2_1:1378482-1378501 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr2_1:1378498-1378517 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr2_1:1378512-1378531 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr2_1:1378524-1378543 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr2_1:1378530-1378549 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr2_1:1378530-1378549 Msa0186630:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr2_1:1378539-1378558 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr2_1:1378633-1378652 Msa0186630:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr2_1:1378634-1378653 Msa0186630:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr2_1:1378709-1378728 Msa0186630:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr2_1:1378815-1378834 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr2_1:1378906-1378925 Msa0186630:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr2_1:1379141-1379160 Msa0186630:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr2_1:1379289-1379308 Msa0186630:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr2_1:1379316-1379335 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr2_1:1379316-1379335 Msa0186630:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr2_1:1379663-1379682 Msa0186630:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr2_1:1379720-1379739 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr2_1:1379822-1379841 Msa0186630:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr2_1:1379831-1379850 Msa0186630:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr2_1:1380047-1380066 Msa0186630:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr2_1:1380062-1380081 Msa0186630:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr2_1:1380077-1380096 Msa0186630:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr2_1:1380087-1380106 Msa0186630:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr2_1:1380088-1380107 Msa0186630:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr2_1:1380201-1380220 Msa0186630:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr2_1:1380202-1380221 Msa0186630:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr2_1:1380303-1380322 Msa0186630:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr2_1:1380446-1380465 None:intergenic 35.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr2_1:1378148-1378167 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr2_1:1378241-1378260 Msa0186630:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr2_1:1378338-1378357 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr2_1:1378454-1378473 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr2_1:1378481-1378500 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr2_1:1378482-1378501 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr2_1:1378498-1378517 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr2_1:1378512-1378531 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr2_1:1378524-1378543 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr2_1:1378530-1378549 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr2_1:1378530-1378549 Msa0186630:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr2_1:1378539-1378558 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr2_1:1378633-1378652 Msa0186630:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr2_1:1378634-1378653 Msa0186630:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr2_1:1378709-1378728 Msa0186630:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr2_1:1378815-1378834 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr2_1:1378906-1378925 Msa0186630:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr2_1:1379141-1379160 Msa0186630:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr2_1:1379289-1379308 Msa0186630:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr2_1:1379316-1379335 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr2_1:1379316-1379335 Msa0186630:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr2_1:1379663-1379682 Msa0186630:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr2_1:1379720-1379739 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr2_1:1379822-1379841 Msa0186630:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr2_1:1379831-1379850 Msa0186630:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr2_1:1380047-1380066 Msa0186630:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr2_1:1380062-1380081 Msa0186630:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr2_1:1380077-1380096 Msa0186630:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr2_1:1380087-1380106 Msa0186630:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr2_1:1380088-1380107 Msa0186630:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr2_1:1380201-1380220 Msa0186630:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr2_1:1380202-1380221 Msa0186630:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr2_1:1380303-1380322 Msa0186630:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr2_1:1380446-1380465 None:intergenic 35.0%
AACAAACTGTGATACCCAAG+GGG - chr2_1:1378169-1378188 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG - chr2_1:1378170-1378189 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr2_1:1378221-1378240 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr2_1:1378240-1378259 Msa0186630:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr2_1:1378315-1378334 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr2_1:1378346-1378365 Msa0186630:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr2_1:1378389-1378408 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr2_1:1378401-1378420 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr2_1:1378399-1378418 Msa0186630:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr2_1:1378513-1378532 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr2_1:1378635-1378654 Msa0186630:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr2_1:1378643-1378662 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr2_1:1378684-1378703 Msa0186630:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr2_1:1378844-1378863 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr2_1:1378953-1378972 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr2_1:1379057-1379076 Msa0186630:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr2_1:1379184-1379203 Msa0186630:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr2_1:1379194-1379213 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr2_1:1379198-1379217 Msa0186630:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr2_1:1379652-1379671 Msa0186630:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr2_1:1379849-1379868 Msa0186630:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr2_1:1379966-1379985 Msa0186630:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr2_1:1380089-1380108 Msa0186630:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr2_1:1380130-1380149 Msa0186630:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr2_1:1380210-1380229 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr2_1:1380445-1380464 None:intergenic 40.0%
AACAAACTGTGATACCCAAG+GGG - chr2_1:1378169-1378188 None:intergenic 40.0%
CAACAAACTGTGATACCCAA+GGG - chr2_1:1378170-1378189 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr2_1:1378221-1378240 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr2_1:1378240-1378259 Msa0186630:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr2_1:1378315-1378334 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr2_1:1378346-1378365 Msa0186630:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr2_1:1378389-1378408 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr2_1:1378401-1378420 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr2_1:1378399-1378418 Msa0186630:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr2_1:1378513-1378532 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr2_1:1378635-1378654 Msa0186630:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr2_1:1378643-1378662 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr2_1:1378684-1378703 Msa0186630:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr2_1:1378844-1378863 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr2_1:1378953-1378972 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr2_1:1379057-1379076 Msa0186630:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr2_1:1379184-1379203 Msa0186630:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr2_1:1379194-1379213 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr2_1:1379198-1379217 Msa0186630:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr2_1:1379652-1379671 Msa0186630:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr2_1:1379849-1379868 Msa0186630:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr2_1:1379966-1379985 Msa0186630:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr2_1:1380089-1380108 Msa0186630:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr2_1:1380130-1380149 Msa0186630:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr2_1:1380210-1380229 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr2_1:1380445-1380464 None:intergenic 40.0%
TTGCCTATAAAAACGCCCCT+TGG + chr2_1:1378151-1378170 Msa0186630:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr2_1:1378152-1378171 Msa0186630:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr2_1:1378157-1378176 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG - chr2_1:1378171-1378190 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr2_1:1378244-1378263 Msa0186630:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr2_1:1378249-1378268 Msa0186630:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr2_1:1378306-1378325 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr2_1:1378307-1378326 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr2_1:1378316-1378335 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr2_1:1378474-1378493 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr2_1:1378690-1378709 Msa0186630:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr2_1:1378718-1378737 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr2_1:1378715-1378734 Msa0186630:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr2_1:1378750-1378769 Msa0186630:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr2_1:1378753-1378772 Msa0186630:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr2_1:1378765-1378784 Msa0186630:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr2_1:1378769-1378788 Msa0186630:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr2_1:1378787-1378806 Msa0186630:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr2_1:1378846-1378865 Msa0186630:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr2_1:1378887-1378906 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr2_1:1378954-1378973 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr2_1:1379144-1379163 Msa0186630:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr2_1:1379204-1379223 Msa0186630:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr2_1:1379681-1379700 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr2_1:1379678-1379697 Msa0186630:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr2_1:1379916-1379935 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr2_1:1379960-1379979 Msa0186630:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr2_1:1379983-1380002 Msa0186630:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr2_1:1380023-1380042 Msa0186630:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr2_1:1380129-1380148 Msa0186630:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr2_1:1380444-1380463 None:intergenic 45.0%
TTGCCTATAAAAACGCCCCT+TGG + chr2_1:1378151-1378170 Msa0186630:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr2_1:1378152-1378171 Msa0186630:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr2_1:1378157-1378176 None:intergenic 45.0%
GCAACAAACTGTGATACCCA+AGG - chr2_1:1378171-1378190 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr2_1:1378244-1378263 Msa0186630:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr2_1:1378249-1378268 Msa0186630:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr2_1:1378306-1378325 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr2_1:1378307-1378326 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr2_1:1378316-1378335 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr2_1:1378474-1378493 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr2_1:1378690-1378709 Msa0186630:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr2_1:1378718-1378737 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr2_1:1378715-1378734 Msa0186630:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr2_1:1378750-1378769 Msa0186630:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr2_1:1378753-1378772 Msa0186630:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr2_1:1378765-1378784 Msa0186630:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr2_1:1378769-1378788 Msa0186630:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr2_1:1378787-1378806 Msa0186630:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr2_1:1378846-1378865 Msa0186630:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr2_1:1378887-1378906 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr2_1:1378954-1378973 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr2_1:1379144-1379163 Msa0186630:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr2_1:1379204-1379223 Msa0186630:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr2_1:1379681-1379700 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr2_1:1379678-1379697 Msa0186630:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr2_1:1379916-1379935 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr2_1:1379960-1379979 Msa0186630:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr2_1:1379983-1380002 Msa0186630:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr2_1:1380023-1380042 Msa0186630:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr2_1:1380129-1380148 Msa0186630:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr2_1:1380444-1380463 None:intergenic 45.0%
!! TTCAATTATTAATTAATTAT+TGG + chr2_1:1379536-1379555 Msa0186630:intron 5.0%
!! TTCAATTATTAATTAATTAT+TGG + chr2_1:1379536-1379555 Msa0186630:intron 5.0%
GAGAGAGAAACATGGGTGGT+TGG + chr2_1:1378248-1378267 Msa0186630:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr2_1:1378466-1378485 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr2_1:1378741-1378760 Msa0186630:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr2_1:1378746-1378765 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr2_1:1378947-1378966 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr2_1:1379150-1379169 Msa0186630:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr2_1:1379741-1379760 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG + chr2_1:1379743-1379762 Msa0186630:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr2_1:1379775-1379794 Msa0186630:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr2_1:1379855-1379874 Msa0186630:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr2_1:1379856-1379875 Msa0186630:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr2_1:1379918-1379937 Msa0186630:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr2_1:1379926-1379945 Msa0186630:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr2_1:1380103-1380122 Msa0186630:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr2_1:1380115-1380134 Msa0186630:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr2_1:1380118-1380137 Msa0186630:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr2_1:1380310-1380329 Msa0186630:three_prime_UTR 50.0%
GAGAGAGAAACATGGGTGGT+TGG + chr2_1:1378248-1378267 Msa0186630:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr2_1:1378466-1378485 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr2_1:1378741-1378760 Msa0186630:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr2_1:1378746-1378765 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr2_1:1378947-1378966 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr2_1:1379150-1379169 Msa0186630:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr2_1:1379741-1379760 None:intergenic 50.0%
GAGTGTCTACGCACCTGAAA+CGG + chr2_1:1379743-1379762 Msa0186630:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr2_1:1379775-1379794 Msa0186630:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr2_1:1379855-1379874 Msa0186630:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr2_1:1379856-1379875 Msa0186630:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr2_1:1379918-1379937 Msa0186630:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr2_1:1379926-1379945 Msa0186630:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr2_1:1380103-1380122 Msa0186630:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr2_1:1380115-1380134 Msa0186630:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr2_1:1380118-1380137 Msa0186630:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr2_1:1380310-1380329 Msa0186630:three_prime_UTR 50.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr2_1:1378265-1378284 Msa0186630:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr2_1:1378268-1378287 Msa0186630:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr2_1:1378274-1378293 Msa0186630:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr2_1:1378736-1378755 Msa0186630:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr2_1:1378747-1378766 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr2_1:1378744-1378763 Msa0186630:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr2_1:1378796-1378815 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG + chr2_1:1379747-1379766 Msa0186630:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG + chr2_1:1379748-1379767 Msa0186630:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr2_1:1379771-1379790 Msa0186630:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr2_1:1379788-1379807 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr2_1:1379864-1379883 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr2_1:1379877-1379896 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr2_1:1379879-1379898 Msa0186630:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr2_1:1380107-1380126 Msa0186630:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr2_1:1380108-1380127 Msa0186630:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr2_1:1380122-1380141 Msa0186630:CDS 55.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr2_1:1378265-1378284 Msa0186630:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr2_1:1378268-1378287 Msa0186630:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr2_1:1378274-1378293 Msa0186630:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr2_1:1378736-1378755 Msa0186630:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr2_1:1378747-1378766 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr2_1:1378744-1378763 Msa0186630:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr2_1:1378796-1378815 None:intergenic 55.0%
GTCTACGCACCTGAAACGGT+CGG + chr2_1:1379747-1379766 Msa0186630:CDS 55.0%
TCTACGCACCTGAAACGGTC+GGG + chr2_1:1379748-1379767 Msa0186630:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr2_1:1379771-1379790 Msa0186630:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr2_1:1379788-1379807 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr2_1:1379864-1379883 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr2_1:1379877-1379896 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr2_1:1379879-1379898 Msa0186630:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr2_1:1380107-1380126 Msa0186630:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr2_1:1380108-1380127 Msa0186630:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr2_1:1380122-1380141 Msa0186630:CDS 55.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr2_1:1378799-1378818 Msa0186630:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG - chr2_1:1379759-1379778 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG + chr2_1:1379761-1379780 Msa0186630:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr2_1:1379798-1379817 Msa0186630:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr2_1:1379811-1379830 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr2_1:1379883-1379902 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr2_1:1379894-1379913 Msa0186630:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr2_1:1379905-1379924 Msa0186630:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr2_1:1379941-1379960 Msa0186630:CDS 60.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr2_1:1378799-1378818 Msa0186630:CDS 60.0%
ACTACGCACCCGACCGTTTC+AGG - chr2_1:1379759-1379778 None:intergenic 60.0%
AACGGTCGGGTGCGTAGTTG+TGG + chr2_1:1379761-1379780 Msa0186630:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr2_1:1379798-1379817 Msa0186630:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr2_1:1379811-1379830 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr2_1:1379883-1379902 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr2_1:1379894-1379913 Msa0186630:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr2_1:1379905-1379924 Msa0186630:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr2_1:1379941-1379960 Msa0186630:CDS 60.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr2_1:1378729-1378748 Msa0186630:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr2_1:1379801-1379820 Msa0186630:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr2_1:1379802-1379821 Msa0186630:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr2_1:1379896-1379915 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr2_1:1379900-1379919 Msa0186630:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr2_1:1379935-1379954 Msa0186630:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr2_1:1379950-1379969 Msa0186630:CDS 65.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr2_1:1378729-1378748 Msa0186630:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr2_1:1379801-1379820 Msa0186630:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr2_1:1379802-1379821 Msa0186630:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr2_1:1379896-1379915 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr2_1:1379900-1379919 Msa0186630:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr2_1:1379935-1379954 Msa0186630:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr2_1:1379950-1379969 Msa0186630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1378132 1380548 1378132 ID=Msa0186630;Name=Msa0186630
chr2_1 mRNA 1378132 1380548 1378132 ID=Msa0186630-mRNA-1;Parent=Msa0186630;Name=Msa0186630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|1|1|4|391|325
chr2_1 exon 1378132 1378420 1378132 ID=Msa0186630-mRNA-1:exon:558;Parent=Msa0186630-mRNA-1
chr2_1 exon 1378694 1378927 1378694 ID=Msa0186630-mRNA-1:exon:559;Parent=Msa0186630-mRNA-1
chr2_1 exon 1379157 1379243 1379157 ID=Msa0186630-mRNA-1:exon:560;Parent=Msa0186630-mRNA-1
chr2_1 exon 1379663 1380548 1379663 ID=Msa0186630-mRNA-1:exon:561;Parent=Msa0186630-mRNA-1
chr2_1 five_prime_UTR 1378132 1378258 1378132 ID=Msa0186630-mRNA-1:five_prime_utr;Parent=Msa0186630-mRNA-1
chr2_1 CDS 1378259 1378420 1378259 ID=Msa0186630-mRNA-1:cds;Parent=Msa0186630-mRNA-1
chr2_1 CDS 1378694 1378927 1378694 ID=Msa0186630-mRNA-1:cds;Parent=Msa0186630-mRNA-1
chr2_1 CDS 1379157 1379243 1379157 ID=Msa0186630-mRNA-1:cds;Parent=Msa0186630-mRNA-1
chr2_1 CDS 1379663 1380157 1379663 ID=Msa0186630-mRNA-1:cds;Parent=Msa0186630-mRNA-1
chr2_1 three_prime_UTR 1380158 1380548 1380158 ID=Msa0186630-mRNA-1:three_prime_utr;Parent=Msa0186630-mRNA-1
Gene Sequence

>Msa0186630

ATGGGTGGTTGGGCAATTGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCTCTTCAACGTCAAGAAGAAGCCAAACAACTTCTTACTCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCTGCCATCGATGTTGTTGAACTTGTGGTGAGGGAATTGGAAACGGATCCATTATTCAATTCGGGTCGTGGATCTGCCCTGACGGAAAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGATGGACCAAAAAGACGATGCGGTGCCGTTTCAGGTTTAACCACAGTAAAAAATCCAATTTCACTGGCTCGTTTAGTCATGGATAAATCTCCTCATTCCTATCTTGCTTTTAACGGCGCTGAAGATTTTGCTAGACAACAGGGTGTGGAGGTTCTGGACAATGAGTACTTTATCACCGCTGACAATGTTGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGTTTGATTATCGGATTCCATCTGGATACGAAACATGTGGTGCAGCAGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGTGTCTACGCACCTGAAACGGTCGGGTGCGTAGTTGTGGACCGTGAAGGAAGGTGTGCTGCTGCCACGTCAACAGGCGGGCTAATGAACAAAATGATTGGTCGGATTGGTGACTCACCTTTGATAGGAGCCGGGACCTACGCGTGTAACCTTGCTGGCGTCTCATGCACCGGTGAAGGTGAGGCTATCATACGTGGCACTTTGGCGCGAGAGGTGTCGGCTGTGATGGAATACAAAGGTCTTGGTCTTCAAGAAGCAGTGGATTTTGTCATTAAGAATCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAGTAAAGGAGAAGTTGCTTATGGATTTAACTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTAG
Protein sequence

>Msa0186630

MGGWAIAVHGGAGVDPNLPLQRQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEDFARQQGVEVLDNEYFITADNVGMLKLAKEANTILFDYRIPSGYETCGAAVESPMKMNGLPMSVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACNLAGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKNRLDEGYAGLIAVSSKGEVAYGFNCNGMFRGCASEDGFMEVGIWE*