AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018240 MtrunA17_Chr1g0152931 100.000 325 0 0 1 325 1 325 0.0 662
Msa0018240 MtrunA17_Chr3g0134271 85.846 325 43 2 1 325 1 322 0.0 570
Msa0018240 MtrunA17_Chr1g0198911 83.385 325 49 1 1 325 1 320 0.0 552
Msa0018240 MtrunA17_Chr4g0061721 59.006 322 127 1 3 324 2 318 2.23e-132 379
Msa0018240 MtrunA17_Chr4g0061731 59.752 323 124 2 3 324 2 319 2.64e-132 379
Msa0018240 MtrunA17_Chr8g0349621 30.449 312 165 11 6 281 23 318 1.06e-22 97.4
Msa0018240 MtrunA17_Chr3g0079001 28.754 313 182 13 38 316 40 345 1.59e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018240 AT3G16150.1 84.615 325 50 0 1 325 1 325 0.0 566
Msa0018240 AT5G08100.1 57.492 327 121 4 1 324 1 312 3.12e-125 361
Msa0018240 AT5G08100.2 57.490 247 88 3 80 324 1 232 3.90e-94 279
Msa0018240 AT4G00590.1 27.187 320 179 8 6 285 15 320 1.68e-20 91.7

Find 115 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGATGCGGTGCCGTTTC+AGG 0.158496 1_1:+30469449 Msa0018240:CDS
GGTTCATGGAGGTTGGAATT+TGG 0.195033 1_1:+30470796 Msa0018240:CDS
AAAAGGTACACAAGTATCTT+AGG 0.208923 1_1:-30471117 None:intergenic
ACTACGCACCCGACTGTTTC+AGG 0.214500 1_1:-30470423 None:intergenic
GGATCTGCCCTGACGGAAAA+AGG 0.260928 1_1:+30469386 Msa0018240:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.262833 1_1:+30470797 Msa0018240:CDS
ACTAAACGAGCCAGTGAAAT+TGG 0.271206 1_1:-30469491 None:intergenic
GTTTCATTGCAACTTGCATT+AGG 0.285399 1_1:+30470975 Msa0018240:three_prime_UTR
TTAACTGCAATGGCATGTTT+AGG 0.291387 1_1:+30470754 Msa0018240:CDS
TTTGTAGGGTGTGGAGGTTC+TGG 0.300802 1_1:+30469817 Msa0018240:intron
AACGGATCCATTATTCAATT+CGG 0.328084 1_1:+30469358 Msa0018240:CDS
AGTAAAGGAGAAGTTGCTTA+TGG 0.336064 1_1:+30470729 Msa0018240:CDS
TAACTGCAATGGCATGTTTA+GGG 0.343986 1_1:+30470755 Msa0018240:CDS
GTTATTGAAGGTGAGGGAAT+TGG 0.347604 1_1:+30469334 Msa0018240:intron
TTTCATTGCAACTTGCATTA+GGG 0.350568 1_1:+30470976 Msa0018240:three_prime_UTR
CTTACTCGTGTTCTCAATCT+TGG 0.354252 1_1:+30468996 Msa0018240:CDS
TGTGCTGCTGCCACGTCAAC+AGG 0.356128 1_1:+30470465 Msa0018240:CDS
TGACGTTGAAGAGGGAGATT+AGG 0.362167 1_1:-30468954 None:intergenic
GTGTGCTGCAGTTTGATTAT+CGG 0.363877 1_1:+30470319 Msa0018240:intron
AACACGAGTAAGAAGTTGTT+TGG 0.379765 1_1:-30468985 None:intergenic
AACATCGATGGCAGAAAGAT+TGG 0.396249 1_1:-30469036 None:intergenic
ATTGCTGTGCATGGTGGTGC+TGG 0.397163 1_1:+30468924 Msa0018240:CDS
AGGGGATGTGCTTCTGAGGA+TGG 0.401581 1_1:+30470774 Msa0018240:CDS
ACGGATCCATTATTCAATTC+GGG 0.402987 1_1:+30469359 Msa0018240:CDS
TGCTTCTGAGGATGGGTTCA+TGG 0.405891 1_1:+30470782 Msa0018240:CDS
CCACGACCCGAATTGAATAA+TGG 0.409899 1_1:-30469365 None:intergenic
CTCATTGCTGTTTCTAGTAA+AGG 0.414337 1_1:+30470714 Msa0018240:CDS
TACTGTGGTTAAACCTGAAA+CGG 0.417200 1_1:-30469462 None:intergenic
TTTGATTATCGGATTCCATC+TGG 0.417677 1_1:+30470330 Msa0018240:CDS
TAATTATTTAGTTGTTTAAG+AGG 0.418424 1_1:+30471010 Msa0018240:three_prime_UTR
ATTGGTGACTCACCTTTGAT+AGG 0.420480 1_1:+30470516 Msa0018240:CDS
AGAGAGAAACATGGGTGGTT+GGG 0.423456 1_1:+30468899 Msa0018240:exon
CCATTATTCAATTCGGGTCG+TGG 0.423817 1_1:+30469365 Msa0018240:CDS
GGTTGGGCAATTGCTGTGCA+TGG 0.428468 1_1:+30468915 Msa0018240:CDS
CACTTTGGCGCGAGAGGTGT+CGG 0.430026 1_1:+30470608 Msa0018240:CDS
CTCTCTGAACTTTACCCTTA+CGG 0.430981 1_1:-30468868 None:intergenic
GGAAATGGAGGCTAGCATAA+TGG 0.434511 1_1:+30469415 Msa0018240:CDS
AAAGGTACACAAGTATCTTA+GGG 0.434945 1_1:-30471116 None:intergenic
GACGTTGAAGAGGGAGATTA+GGG 0.438575 1_1:-30468953 None:intergenic
ATTAAGAATCGTTTGGATGA+AGG 0.439748 1_1:+30470681 Msa0018240:CDS
AAAGGAAGCAAATACAATCT+TGG 0.457652 1_1:+30469889 Msa0018240:CDS
GGGGATGTGCTTCTGAGGAT+GGG 0.460240 1_1:+30470775 Msa0018240:CDS
CAGCAGCACACCTTCCTTCA+CGG 0.468263 1_1:-30470452 None:intergenic
TGCAACTTGCATTAGGGTCC+CGG 0.468325 1_1:+30470982 Msa0018240:three_prime_UTR
TCAGGTGCGTAGACACTCAT+TGG 0.468761 1_1:-30470405 None:intergenic
GACTCACCTTTGATAGGAGC+CGG 0.472240 1_1:+30470522 Msa0018240:CDS
TAGTTGCCAGTGAAAATTGT+TGG 0.476331 1_1:+30470868 Msa0018240:three_prime_UTR
ACCTACGCGTGTAACCTTGC+TGG 0.480120 1_1:+30470546 Msa0018240:CDS
GAGGATGGGTTCATGGAGGT+TGG 0.480884 1_1:+30470789 Msa0018240:CDS
AGCGCCGTTAAAAGCAAGAT+AGG 0.481695 1_1:-30469534 None:intergenic
AGTTGCCAGTGAAAATTGTT+GGG 0.481818 1_1:+30470869 Msa0018240:three_prime_UTR
GCTTATGGATTTAACTGCAA+TGG 0.484263 1_1:+30470744 Msa0018240:CDS
TTCACTGGCTCGTTTAGTCA+TGG 0.486469 1_1:+30469496 Msa0018240:CDS
AAGGTTACACGCGTAGGTCC+CGG 0.486913 1_1:-30470541 None:intergenic
GAAAGTCCAATGAAAATGAA+TGG 0.491181 1_1:+30470378 Msa0018240:CDS
AACAGTCGGGTGCGTAGTTG+TGG 0.493878 1_1:+30470428 Msa0018240:CDS
TATGATAGCCTCACCTTCAC+CGG 0.497356 1_1:-30470580 None:intergenic
CTTCTTCTTGACGTTGAAGA+GGG 0.497744 1_1:-30468962 None:intergenic
GAGTTTGAGAGAGAGAAACA+TGG 0.504074 1_1:+30468890 Msa0018240:exon
CGTTTGGATGAAGGATATGC+TGG 0.504298 1_1:+30470690 Msa0018240:CDS
GTGATGGAATACAAAGGTCT+TGG 0.504451 1_1:+30470633 Msa0018240:CDS
AACAAAATGATTGGTCGGAT+TGG 0.504757 1_1:+30470498 Msa0018240:CDS
GAGAGAGAAACATGGGTGGT+TGG 0.505927 1_1:+30468898 Msa0018240:exon
CAACTAAATAATTACAGCAC+CGG 0.506844 1_1:-30471001 None:intergenic
GGGCTAATGAACAAAATGAT+TGG 0.512413 1_1:+30470489 Msa0018240:CDS
GCTTCTTCTTGACGTTGAAG+AGG 0.520285 1_1:-30468963 None:intergenic
GCGAGAGGTGTCGGCTGTGA+TGG 0.520900 1_1:+30470617 Msa0018240:CDS
GGCGTCTCATGCACCGGTGA+AGG 0.524434 1_1:+30470567 Msa0018240:CDS
AATTATTTAGTTGTTTAAGA+GGG 0.534165 1_1:+30471011 Msa0018240:three_prime_UTR
GGCTATCATACGTGGCACTT+TGG 0.535143 1_1:+30470593 Msa0018240:CDS
GCTGCTGCCACGTCAACAGG+CGG 0.537860 1_1:+30470468 Msa0018240:CDS
CTTGCTGGCGTCTCATGCAC+CGG 0.541455 1_1:+30470561 Msa0018240:CDS
AGTTTGAGAGAGAGAAACAT+GGG 0.545658 1_1:+30468891 Msa0018240:exon
CATTAGCCCGCCTGTTGACG+TGG 0.549451 1_1:-30470475 None:intergenic
CTGCTGCCACGTCAACAGGC+GGG 0.561806 1_1:+30470469 Msa0018240:CDS
TAATGAACAAAATGATTGGT+CGG 0.563124 1_1:+30470493 Msa0018240:CDS
GAAGGTGAGGGAATTGGAAA+CGG 0.565330 1_1:+30469340 Msa0018240:intron
CAATGTTGGTATGCTTAAGC+TGG 0.567336 1_1:+30469865 Msa0018240:CDS
GGGTCGTGGATCTGCCCTGA+CGG 0.570628 1_1:+30469379 Msa0018240:CDS
GTTTAGGGGATGTGCTTCTG+AGG 0.570942 1_1:+30470770 Msa0018240:CDS
ACGTGGCACTTTGGCGCGAG+AGG 0.574745 1_1:+30470602 Msa0018240:CDS
TAGGTCCCGGCTCCTATCAA+AGG 0.574816 1_1:-30470528 None:intergenic
TTTATCACCGCTGACAATGT+TGG 0.576194 1_1:+30469851 Msa0018240:CDS
AACTAAATAATTACAGCACC+GGG 0.578336 1_1:-30471000 None:intergenic
TCTACGCACCTGAAACAGTC+GGG 0.579137 1_1:+30470415 Msa0018240:CDS
CCACATGTTTCGTATCCAGA+TGG 0.581145 1_1:-30470345 None:intergenic
AACTGCAATGGCATGTTTAG+GGG 0.582673 1_1:+30470756 Msa0018240:CDS
CTAAATTAAAAGAAAAGAGA+AGG 0.587342 1_1:-30470893 None:intergenic
CATCGATGTTGTTGAACTTG+TGG 0.587378 1_1:+30469049 Msa0018240:CDS
CTCATGCACCGGTGAAGGTG+AGG 0.595337 1_1:+30470572 Msa0018240:CDS
TCTTGGTCTTCAAGAAGCAG+TGG 0.595757 1_1:+30470650 Msa0018240:CDS
ATGGAGGCTAGCATAATGGA+TGG 0.598729 1_1:+30469419 Msa0018240:CDS
ACTCACCTTTGATAGGAGCC+GGG 0.601444 1_1:+30470523 Msa0018240:CDS
CAACAAACTGTGTTACCCAA+GGG 0.603742 1_1:-30468817 None:intergenic
GCAACAAACTGTGTTACCCA+AGG 0.604415 1_1:-30468818 None:intergenic
TGCGTAGTTGTGGACCGTGA+AGG 0.611085 1_1:+30470438 Msa0018240:CDS
GTCTACGCACCTGAAACAGT+CGG 0.614969 1_1:+30470414 Msa0018240:CDS
CACAAGTTCAACAACATCGA+TGG 0.615685 1_1:-30469048 None:intergenic
TTGAGAGAGAGAAACATGGG+TGG 0.619739 1_1:+30468894 Msa0018240:exon
AAAAGGAACGGTGGAAATGG+AGG 0.622339 1_1:+30469403 Msa0018240:CDS
TGGTATGCTTAAGCTGGCAA+AGG 0.632666 1_1:+30469871 Msa0018240:CDS
TTAAAAGCAAGATAGGAATG+AGG 0.636686 1_1:-30469527 None:intergenic
AGGTACACAAGTATCTTAGG+GGG 0.644899 1_1:-30471114 None:intergenic
CGGTGCATGAGACGCCAGCA+AGG 0.648195 1_1:-30470560 None:intergenic
AAGGTACACAAGTATCTTAG+GGG 0.653273 1_1:-30471115 None:intergenic
TGGGCAATTGCTGTGCATGG+TGG 0.661106 1_1:+30468918 Msa0018240:CDS
TAGTTGTGGACCGTGAAGGA+AGG 0.661356 1_1:+30470442 Msa0018240:CDS
AACAAACTGTGTTACCCAAG+GGG 0.674724 1_1:-30468816 None:intergenic
CCATCTGGATACGAAACATG+TGG 0.678131 1_1:+30470345 Msa0018240:CDS
GCCAGCAAGGTTACACGCGT+AGG 0.682958 1_1:-30470547 None:intergenic
GAAGGTGAGGCTATCATACG+TGG 0.685255 1_1:+30470585 Msa0018240:CDS
AAGCATACCAACATTGTCAG+CGG 0.698333 1_1:-30469858 None:intergenic
TTCTGAGGATGGGTTCATGG+AGG 0.702330 1_1:+30470785 Msa0018240:CDS
TCGGCTGTGATGGAATACAA+AGG 0.710713 1_1:+30470627 Msa0018240:CDS
GGTACACAAGTATCTTAGGG+GGG 0.718324 1_1:-30471113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTGTTATTGA+AGG + chr1_1:30469322-30469341 Msa0018240:intron 10.0%
!!! ATCTTTATTTACAAAAAAAT+AGG + chr1_1:30469679-30469698 Msa0018240:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr1_1:30469701-30469720 Msa0018240:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr1_1:30470924-30470943 Msa0018240:three_prime_UTR 10.0%
!!! TTATTTATTTTTGTTATTGA+AGG + chr1_1:30469322-30469341 Msa0018240:intron 10.0%
!!! ATCTTTATTTACAAAAAAAT+AGG + chr1_1:30469679-30469698 Msa0018240:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr1_1:30469701-30469720 Msa0018240:intron 10.0%
!!! TTTGATTTGTTTTTTAATTT+GGG + chr1_1:30470924-30470943 Msa0018240:three_prime_UTR 10.0%
!!! AATATATTTTAACTATTCCA+AGG + chr1_1:30469273-30469292 Msa0018240:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr1_1:30469700-30469719 Msa0018240:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr1_1:30469802-30469821 Msa0018240:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr1_1:30469803-30469822 Msa0018240:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr1_1:30469945-30469964 Msa0018240:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr1_1:30470034-30470053 Msa0018240:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr1_1:30470236-30470255 Msa0018240:intron 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr1_1:30470923-30470942 Msa0018240:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr1_1:30471010-30471029 Msa0018240:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr1_1:30471011-30471030 Msa0018240:three_prime_UTR 15.0%
!!! AATATATTTTAACTATTCCA+AGG + chr1_1:30469273-30469292 Msa0018240:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr1_1:30469700-30469719 Msa0018240:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr1_1:30469802-30469821 Msa0018240:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr1_1:30469803-30469822 Msa0018240:intron 15.0%
!! TGAATTATTATTACATTGTA+CGG + chr1_1:30469945-30469964 Msa0018240:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr1_1:30470034-30470053 Msa0018240:intron 15.0%
!!! ATTCTTTCATTCATTTTTTA+CGG + chr1_1:30470236-30470255 Msa0018240:intron 15.0%
!!! CTTTGATTTGTTTTTTAATT+TGG + chr1_1:30470923-30470942 Msa0018240:three_prime_UTR 15.0%
!! TAATTATTTAGTTGTTTAAG+AGG + chr1_1:30471010-30471029 Msa0018240:three_prime_UTR 15.0%
!! AATTATTTAGTTGTTTAAGA+GGG + chr1_1:30471011-30471030 Msa0018240:three_prime_UTR 15.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr1_1:30469644-30469663 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr1_1:30469705-30469724 Msa0018240:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr1_1:30469918-30469937 Msa0018240:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr1_1:30469938-30469957 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr1_1:30469946-30469965 Msa0018240:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr1_1:30470033-30470052 Msa0018240:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr1_1:30470150-30470169 None:intergenic 20.0%
!! CTAAATTAAAAGAAAAGAGA+AGG - chr1_1:30470896-30470915 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr1_1:30470931-30470950 Msa0018240:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr1_1:30470932-30470951 Msa0018240:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr1_1:30471066-30471085 Msa0018240:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr1_1:30471083-30471102 Msa0018240:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr1_1:30471137-30471156 None:intergenic 20.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr1_1:30469644-30469663 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr1_1:30469705-30469724 Msa0018240:intron 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr1_1:30469918-30469937 Msa0018240:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr1_1:30469938-30469957 None:intergenic 20.0%
!! GAATTATTATTACATTGTAC+GGG + chr1_1:30469946-30469965 Msa0018240:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr1_1:30470033-30470052 Msa0018240:intron 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr1_1:30470150-30470169 None:intergenic 20.0%
!! CTAAATTAAAAGAAAAGAGA+AGG - chr1_1:30470896-30470915 None:intergenic 20.0%
!!! TGTTTTTTAATTTGGGTTTT+AGG + chr1_1:30470931-30470950 Msa0018240:three_prime_UTR 20.0%
!!! GTTTTTTAATTTGGGTTTTA+GGG + chr1_1:30470932-30470951 Msa0018240:three_prime_UTR 20.0%
!!! GTTTTTTCATTTATCTCTTA+TGG + chr1_1:30471066-30471085 Msa0018240:three_prime_UTR 20.0%
!! TTATGGAAATAAAAAAAAGC+TGG + chr1_1:30471083-30471102 Msa0018240:three_prime_UTR 20.0%
!! ATAAATGAGAAGAAGAAAAA+AGG - chr1_1:30471137-30471156 None:intergenic 20.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr1_1:30468849-30468868 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr1_1:30469255-30469274 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr1_1:30469280-30469299 Msa0018240:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr1_1:30469327-30469346 Msa0018240:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr1_1:30469328-30469347 Msa0018240:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr1_1:30469480-30469499 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr1_1:30469481-30469500 Msa0018240:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr1_1:30469619-30469638 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr1_1:30470011-30470030 Msa0018240:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr1_1:30470012-30470031 Msa0018240:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr1_1:30470079-30470098 Msa0018240:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr1_1:30470106-30470125 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr1_1:30470493-30470512 Msa0018240:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr1_1:30470674-30470693 Msa0018240:CDS 25.0%
!!! GTGTTTTTGTTATTGATGTT+TGG - chr1_1:30468849-30468868 None:intergenic 25.0%
! TTCTTGTTAATCATGTAGTT+TGG - chr1_1:30469255-30469274 None:intergenic 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr1_1:30469280-30469299 Msa0018240:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr1_1:30469327-30469346 Msa0018240:intron 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr1_1:30469328-30469347 Msa0018240:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr1_1:30469480-30469499 None:intergenic 25.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr1_1:30469481-30469500 Msa0018240:CDS 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr1_1:30469619-30469638 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr1_1:30470011-30470030 Msa0018240:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr1_1:30470012-30470031 Msa0018240:intron 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr1_1:30470079-30470098 Msa0018240:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr1_1:30470106-30470125 None:intergenic 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr1_1:30470493-30470512 Msa0018240:CDS 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr1_1:30470674-30470693 Msa0018240:CDS 25.0%
TCAATAACAAAAACACCGTA+AGG + chr1_1:30468853-30468872 Msa0018240:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr1_1:30468854-30468873 Msa0018240:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr1_1:30469183-30469202 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr1_1:30469209-30469228 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr1_1:30469222-30469241 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr1_1:30469358-30469377 Msa0018240:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr1_1:30469530-30469549 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr1_1:30469530-30469549 Msa0018240:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr1_1:30469635-30469654 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr1_1:30469711-30469730 Msa0018240:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr1_1:30469889-30469908 Msa0018240:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr1_1:30469954-30469973 Msa0018240:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr1_1:30469955-30469974 Msa0018240:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr1_1:30469984-30470003 Msa0018240:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr1_1:30470185-30470204 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr1_1:30470378-30470397 Msa0018240:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr1_1:30470681-30470700 Msa0018240:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr1_1:30470935-30470954 Msa0018240:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr1_1:30470936-30470955 Msa0018240:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr1_1:30470976-30470995 Msa0018240:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr1_1:30471003-30471022 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr1_1:30471004-30471023 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr1_1:30471119-30471138 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr1_1:30471120-30471139 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr1_1:30471185-30471204 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr1_1:30471186-30471205 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr1_1:30471187-30471206 None:intergenic 30.0%
TCAATAACAAAAACACCGTA+AGG + chr1_1:30468853-30468872 Msa0018240:five_prime_UTR 30.0%
CAATAACAAAAACACCGTAA+GGG + chr1_1:30468854-30468873 Msa0018240:five_prime_UTR 30.0%
CCATGAAGTAATAATGGTAA+CGG - chr1_1:30469183-30469202 None:intergenic 30.0%
! AGATTCACGGTTATTTGTTA+TGG - chr1_1:30469209-30469228 None:intergenic 30.0%
CAATGCATGTATTAGATTCA+CGG - chr1_1:30469222-30469241 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr1_1:30469358-30469377 Msa0018240:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr1_1:30469530-30469549 None:intergenic 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr1_1:30469530-30469549 Msa0018240:CDS 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr1_1:30469635-30469654 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr1_1:30469711-30469730 Msa0018240:intron 30.0%
AAAGGAAGCAAATACAATCT+TGG + chr1_1:30469889-30469908 Msa0018240:CDS 30.0%
! ATTACATTGTACGGGTTAAA+AGG + chr1_1:30469954-30469973 Msa0018240:intron 30.0%
! TTACATTGTACGGGTTAAAA+GGG + chr1_1:30469955-30469974 Msa0018240:intron 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr1_1:30469984-30470003 Msa0018240:intron 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr1_1:30470185-30470204 None:intergenic 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr1_1:30470378-30470397 Msa0018240:CDS 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr1_1:30470681-30470700 Msa0018240:CDS 30.0%
!!! TTTTAATTTGGGTTTTAGGG+TGG + chr1_1:30470935-30470954 Msa0018240:three_prime_UTR 30.0%
!!! TTTAATTTGGGTTTTAGGGT+GGG + chr1_1:30470936-30470955 Msa0018240:three_prime_UTR 30.0%
TTTCATTGCAACTTGCATTA+GGG + chr1_1:30470976-30470995 Msa0018240:three_prime_UTR 30.0%
AACTAAATAATTACAGCACC+GGG - chr1_1:30471003-30471022 None:intergenic 30.0%
CAACTAAATAATTACAGCAC+CGG - chr1_1:30471004-30471023 None:intergenic 30.0%
! AAAGGTACACAAGTATCTTA+GGG - chr1_1:30471119-30471138 None:intergenic 30.0%
! AAAAGGTACACAAGTATCTT+AGG - chr1_1:30471120-30471139 None:intergenic 30.0%
!!! ATTTTCTGCTTTGAAAACAG+GGG - chr1_1:30471185-30471204 None:intergenic 30.0%
!!! CATTTTCTGCTTTGAAAACA+GGG - chr1_1:30471186-30471205 None:intergenic 30.0%
!!! ACATTTTCTGCTTTGAAAAC+AGG - chr1_1:30471187-30471206 None:intergenic 30.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr1_1:30468798-30468817 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr1_1:30468891-30468910 Msa0018240:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr1_1:30468988-30469007 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr1_1:30469104-30469123 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr1_1:30469131-30469150 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr1_1:30469132-30469151 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr1_1:30469148-30469167 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr1_1:30469162-30469181 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr1_1:30469174-30469193 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr1_1:30469180-30469199 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr1_1:30469180-30469199 Msa0018240:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr1_1:30469189-30469208 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr1_1:30469283-30469302 Msa0018240:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr1_1:30469284-30469303 Msa0018240:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr1_1:30469359-30469378 Msa0018240:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr1_1:30469465-30469484 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr1_1:30469556-30469575 Msa0018240:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr1_1:30469808-30469827 Msa0018240:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr1_1:30469956-30469975 Msa0018240:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr1_1:30469983-30470002 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr1_1:30469983-30470002 Msa0018240:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr1_1:30470330-30470349 Msa0018240:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr1_1:30470387-30470406 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr1_1:30470489-30470508 Msa0018240:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr1_1:30470498-30470517 Msa0018240:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr1_1:30470714-30470733 Msa0018240:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr1_1:30470729-30470748 Msa0018240:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr1_1:30470744-30470763 Msa0018240:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr1_1:30470754-30470773 Msa0018240:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr1_1:30470755-30470774 Msa0018240:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr1_1:30470868-30470887 Msa0018240:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr1_1:30470869-30470888 Msa0018240:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr1_1:30470975-30470994 Msa0018240:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr1_1:30471118-30471137 None:intergenic 35.0%
! GGCGTTTTTATAGGCAATTT+CGG - chr1_1:30468798-30468817 None:intergenic 35.0%
AGTTTGAGAGAGAGAAACAT+GGG + chr1_1:30468891-30468910 Msa0018240:exon 35.0%
AACACGAGTAAGAAGTTGTT+TGG - chr1_1:30468988-30469007 None:intergenic 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr1_1:30469104-30469123 None:intergenic 35.0%
AGATGGAAACATGTGTATGT+GGG - chr1_1:30469131-30469150 None:intergenic 35.0%
AAGATGGAAACATGTGTATG+TGG - chr1_1:30469132-30469151 None:intergenic 35.0%
AAAAAAGGGACATGACAAGA+TGG - chr1_1:30469148-30469167 None:intergenic 35.0%
GGTGGAAAAGGAACAAAAAA+GGG - chr1_1:30469162-30469181 None:intergenic 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr1_1:30469174-30469193 None:intergenic 35.0%
!! TGAAGTAATAATGGTAACGG+TGG - chr1_1:30469180-30469199 None:intergenic 35.0%
CCGTTACCATTATTACTTCA+TGG + chr1_1:30469180-30469199 Msa0018240:intron 35.0%
TGGTAGCCATGAAGTAATAA+TGG - chr1_1:30469189-30469208 None:intergenic 35.0%
AACTATTCCAAGGAATTTGG+AGG + chr1_1:30469283-30469302 Msa0018240:intron 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr1_1:30469284-30469303 Msa0018240:intron 35.0%
ACGGATCCATTATTCAATTC+GGG + chr1_1:30469359-30469378 Msa0018240:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr1_1:30469465-30469484 None:intergenic 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr1_1:30469556-30469575 Msa0018240:CDS 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr1_1:30469808-30469827 Msa0018240:intron 35.0%
! TACATTGTACGGGTTAAAAG+GGG + chr1_1:30469956-30469975 Msa0018240:intron 35.0%
TTTCAGAAAAACACACACTC+TGG - chr1_1:30469983-30470002 None:intergenic 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr1_1:30469983-30470002 Msa0018240:intron 35.0%
TTTGATTATCGGATTCCATC+TGG + chr1_1:30470330-30470349 Msa0018240:CDS 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr1_1:30470387-30470406 None:intergenic 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr1_1:30470489-30470508 Msa0018240:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr1_1:30470498-30470517 Msa0018240:CDS 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr1_1:30470714-30470733 Msa0018240:CDS 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr1_1:30470729-30470748 Msa0018240:CDS 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr1_1:30470744-30470763 Msa0018240:CDS 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr1_1:30470754-30470773 Msa0018240:CDS 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr1_1:30470755-30470774 Msa0018240:CDS 35.0%
TAGTTGCCAGTGAAAATTGT+TGG + chr1_1:30470868-30470887 Msa0018240:three_prime_UTR 35.0%
AGTTGCCAGTGAAAATTGTT+GGG + chr1_1:30470869-30470888 Msa0018240:three_prime_UTR 35.0%
GTTTCATTGCAACTTGCATT+AGG + chr1_1:30470975-30470994 Msa0018240:three_prime_UTR 35.0%
AAGGTACACAAGTATCTTAG+GGG - chr1_1:30471118-30471137 None:intergenic 35.0%
AACAAACTGTGTTACCCAAG+GGG - chr1_1:30468819-30468838 None:intergenic 40.0%
CAACAAACTGTGTTACCCAA+GGG - chr1_1:30468820-30468839 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr1_1:30468871-30468890 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr1_1:30468890-30468909 Msa0018240:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr1_1:30468965-30468984 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr1_1:30468996-30469015 Msa0018240:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr1_1:30469039-30469058 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr1_1:30469051-30469070 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr1_1:30469049-30469068 Msa0018240:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr1_1:30469163-30469182 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr1_1:30469285-30469304 Msa0018240:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr1_1:30469293-30469312 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr1_1:30469334-30469353 Msa0018240:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr1_1:30469494-30469513 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr1_1:30469603-30469622 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr1_1:30469724-30469743 Msa0018240:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr1_1:30469851-30469870 Msa0018240:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr1_1:30469861-30469880 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr1_1:30469865-30469884 Msa0018240:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr1_1:30470319-30470338 Msa0018240:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr1_1:30470516-30470535 Msa0018240:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr1_1:30470633-30470652 Msa0018240:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr1_1:30470756-30470775 Msa0018240:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr1_1:30470797-30470816 Msa0018240:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr1_1:30470877-30470896 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr1_1:30471117-30471136 None:intergenic 40.0%
AACAAACTGTGTTACCCAAG+GGG - chr1_1:30468819-30468838 None:intergenic 40.0%
CAACAAACTGTGTTACCCAA+GGG - chr1_1:30468820-30468839 None:intergenic 40.0%
CTCTCTGAACTTTACCCTTA+CGG - chr1_1:30468871-30468890 None:intergenic 40.0%
GAGTTTGAGAGAGAGAAACA+TGG + chr1_1:30468890-30468909 Msa0018240:exon 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr1_1:30468965-30468984 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr1_1:30468996-30469015 Msa0018240:CDS 40.0%
AACATCGATGGCAGAAAGAT+TGG - chr1_1:30469039-30469058 None:intergenic 40.0%
CACAAGTTCAACAACATCGA+TGG - chr1_1:30469051-30469070 None:intergenic 40.0%
CATCGATGTTGTTGAACTTG+TGG + chr1_1:30469049-30469068 Msa0018240:CDS 40.0%
CGGTGGAAAAGGAACAAAAA+AGG - chr1_1:30469163-30469182 None:intergenic 40.0%
CTATTCCAAGGAATTTGGAG+GGG + chr1_1:30469285-30469304 Msa0018240:intron 40.0%
ATAATCCCCTCCAAATTCCT+TGG - chr1_1:30469293-30469312 None:intergenic 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr1_1:30469334-30469353 Msa0018240:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr1_1:30469494-30469513 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr1_1:30469603-30469622 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr1_1:30469724-30469743 Msa0018240:intron 40.0%
TTTATCACCGCTGACAATGT+TGG + chr1_1:30469851-30469870 Msa0018240:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr1_1:30469861-30469880 None:intergenic 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr1_1:30469865-30469884 Msa0018240:CDS 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr1_1:30470319-30470338 Msa0018240:intron 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr1_1:30470516-30470535 Msa0018240:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr1_1:30470633-30470652 Msa0018240:CDS 40.0%
AACTGCAATGGCATGTTTAG+GGG + chr1_1:30470756-30470775 Msa0018240:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr1_1:30470797-30470816 Msa0018240:CDS 40.0%
! AAGGACCCAACAATTTTCAC+TGG - chr1_1:30470877-30470896 None:intergenic 40.0%
AGGTACACAAGTATCTTAGG+GGG - chr1_1:30471117-30471136 None:intergenic 40.0%
TTGCCTATAAAAACGCCCCT+TGG + chr1_1:30468801-30468820 Msa0018240:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr1_1:30468802-30468821 Msa0018240:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr1_1:30468807-30468826 None:intergenic 45.0%
GCAACAAACTGTGTTACCCA+AGG - chr1_1:30468821-30468840 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr1_1:30468894-30468913 Msa0018240:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr1_1:30468899-30468918 Msa0018240:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr1_1:30468956-30468975 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr1_1:30468957-30468976 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr1_1:30468966-30468985 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr1_1:30469124-30469143 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr1_1:30469340-30469359 Msa0018240:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr1_1:30469368-30469387 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr1_1:30469365-30469384 Msa0018240:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr1_1:30469400-30469419 Msa0018240:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr1_1:30469403-30469422 Msa0018240:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr1_1:30469415-30469434 Msa0018240:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr1_1:30469419-30469438 Msa0018240:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr1_1:30469437-30469456 Msa0018240:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr1_1:30469496-30469515 Msa0018240:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr1_1:30469537-30469556 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr1_1:30469604-30469623 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr1_1:30469811-30469830 Msa0018240:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr1_1:30469871-30469890 Msa0018240:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr1_1:30470348-30470367 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr1_1:30470345-30470364 Msa0018240:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr1_1:30470583-30470602 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr1_1:30470627-30470646 Msa0018240:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr1_1:30470650-30470669 Msa0018240:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr1_1:30470690-30470709 Msa0018240:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr1_1:30470796-30470815 Msa0018240:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr1_1:30471116-30471135 None:intergenic 45.0%
TTGCCTATAAAAACGCCCCT+TGG + chr1_1:30468801-30468820 Msa0018240:five_prime_UTR 45.0%
TGCCTATAAAAACGCCCCTT+GGG + chr1_1:30468802-30468821 Msa0018240:five_prime_UTR 45.0%
!!! TACCCAAGGGGCGTTTTTAT+AGG - chr1_1:30468807-30468826 None:intergenic 45.0%
GCAACAAACTGTGTTACCCA+AGG - chr1_1:30468821-30468840 None:intergenic 45.0%
TTGAGAGAGAGAAACATGGG+TGG + chr1_1:30468894-30468913 Msa0018240:exon 45.0%
AGAGAGAAACATGGGTGGTT+GGG + chr1_1:30468899-30468918 Msa0018240:exon 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr1_1:30468956-30468975 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr1_1:30468957-30468976 None:intergenic 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr1_1:30468966-30468985 None:intergenic 45.0%
AACATGTGTATGTGGGTACG+AGG - chr1_1:30469124-30469143 None:intergenic 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr1_1:30469340-30469359 Msa0018240:intron 45.0%
CCACGACCCGAATTGAATAA+TGG - chr1_1:30469368-30469387 None:intergenic 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr1_1:30469365-30469384 Msa0018240:CDS 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr1_1:30469400-30469419 Msa0018240:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr1_1:30469403-30469422 Msa0018240:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr1_1:30469415-30469434 Msa0018240:CDS 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr1_1:30469419-30469438 Msa0018240:CDS 45.0%
GATGGACCAAAAAGACGATG+CGG + chr1_1:30469437-30469456 Msa0018240:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr1_1:30469496-30469515 Msa0018240:CDS 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr1_1:30469537-30469556 None:intergenic 45.0%
GTTTAAGGAAGACACACACG+TGG - chr1_1:30469604-30469623 None:intergenic 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr1_1:30469811-30469830 Msa0018240:intron 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr1_1:30469871-30469890 Msa0018240:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr1_1:30470348-30470367 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr1_1:30470345-30470364 Msa0018240:CDS 45.0%
TATGATAGCCTCACCTTCAC+CGG - chr1_1:30470583-30470602 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr1_1:30470627-30470646 Msa0018240:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr1_1:30470650-30470669 Msa0018240:CDS 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr1_1:30470690-30470709 Msa0018240:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr1_1:30470796-30470815 Msa0018240:CDS 45.0%
GGTACACAAGTATCTTAGGG+GGG - chr1_1:30471116-30471135 None:intergenic 45.0%
!! TTCAATTATTAATTAATTAT+TGG + chr1_1:30470203-30470222 Msa0018240:intron 5.0%
!! TTCAATTATTAATTAATTAT+TGG + chr1_1:30470203-30470222 Msa0018240:intron 5.0%
GAGAGAGAAACATGGGTGGT+TGG + chr1_1:30468898-30468917 Msa0018240:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr1_1:30469116-30469135 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr1_1:30469391-30469410 Msa0018240:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr1_1:30469396-30469415 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr1_1:30469597-30469616 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr1_1:30469817-30469836 Msa0018240:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr1_1:30470408-30470427 None:intergenic 50.0%
GTCTACGCACCTGAAACAGT+CGG + chr1_1:30470414-30470433 Msa0018240:CDS 50.0%
TCTACGCACCTGAAACAGTC+GGG + chr1_1:30470415-30470434 Msa0018240:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr1_1:30470442-30470461 Msa0018240:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr1_1:30470522-30470541 Msa0018240:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr1_1:30470523-30470542 Msa0018240:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr1_1:30470585-30470604 Msa0018240:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr1_1:30470593-30470612 Msa0018240:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr1_1:30470770-30470789 Msa0018240:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr1_1:30470782-30470801 Msa0018240:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr1_1:30470785-30470804 Msa0018240:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr1_1:30470982-30471001 Msa0018240:three_prime_UTR 50.0%
GAGAGAGAAACATGGGTGGT+TGG + chr1_1:30468898-30468917 Msa0018240:exon 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr1_1:30469116-30469135 None:intergenic 50.0%
TGCCCTGACGGAAAAAGGAA+CGG + chr1_1:30469391-30469410 Msa0018240:CDS 50.0%
! CACCGTTCCTTTTTCCGTCA+GGG - chr1_1:30469396-30469415 None:intergenic 50.0%
GAAGACACACACGTGGGAAT+AGG - chr1_1:30469597-30469616 None:intergenic 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr1_1:30469817-30469836 Msa0018240:intron 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr1_1:30470408-30470427 None:intergenic 50.0%
GTCTACGCACCTGAAACAGT+CGG + chr1_1:30470414-30470433 Msa0018240:CDS 50.0%
TCTACGCACCTGAAACAGTC+GGG + chr1_1:30470415-30470434 Msa0018240:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr1_1:30470442-30470461 Msa0018240:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr1_1:30470522-30470541 Msa0018240:CDS 50.0%
ACTCACCTTTGATAGGAGCC+GGG + chr1_1:30470523-30470542 Msa0018240:CDS 50.0%
GAAGGTGAGGCTATCATACG+TGG + chr1_1:30470585-30470604 Msa0018240:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr1_1:30470593-30470612 Msa0018240:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr1_1:30470770-30470789 Msa0018240:CDS 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr1_1:30470782-30470801 Msa0018240:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr1_1:30470785-30470804 Msa0018240:CDS 50.0%
TGCAACTTGCATTAGGGTCC+CGG + chr1_1:30470982-30471001 Msa0018240:three_prime_UTR 50.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr1_1:30468915-30468934 Msa0018240:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr1_1:30468918-30468937 Msa0018240:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr1_1:30468924-30468943 Msa0018240:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr1_1:30469386-30469405 Msa0018240:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr1_1:30469397-30469416 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr1_1:30469394-30469413 Msa0018240:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr1_1:30469446-30469465 None:intergenic 55.0%
ACTACGCACCCGACTGTTTC+AGG - chr1_1:30470426-30470445 None:intergenic 55.0%
AACAGTCGGGTGCGTAGTTG+TGG + chr1_1:30470428-30470447 Msa0018240:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr1_1:30470438-30470457 Msa0018240:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr1_1:30470455-30470474 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr1_1:30470531-30470550 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr1_1:30470544-30470563 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr1_1:30470546-30470565 Msa0018240:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr1_1:30470774-30470793 Msa0018240:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr1_1:30470775-30470794 Msa0018240:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr1_1:30470789-30470808 Msa0018240:CDS 55.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr1_1:30468915-30468934 Msa0018240:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr1_1:30468918-30468937 Msa0018240:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr1_1:30468924-30468943 Msa0018240:CDS 55.0%
GGATCTGCCCTGACGGAAAA+AGG + chr1_1:30469386-30469405 Msa0018240:CDS 55.0%
! CCACCGTTCCTTTTTCCGTC+AGG - chr1_1:30469397-30469416 None:intergenic 55.0%
CCTGACGGAAAAAGGAACGG+TGG + chr1_1:30469394-30469413 Msa0018240:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr1_1:30469446-30469465 None:intergenic 55.0%
ACTACGCACCCGACTGTTTC+AGG - chr1_1:30470426-30470445 None:intergenic 55.0%
AACAGTCGGGTGCGTAGTTG+TGG + chr1_1:30470428-30470447 Msa0018240:CDS 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr1_1:30470438-30470457 Msa0018240:CDS 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr1_1:30470455-30470474 None:intergenic 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr1_1:30470531-30470550 None:intergenic 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr1_1:30470544-30470563 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr1_1:30470546-30470565 Msa0018240:CDS 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr1_1:30470774-30470793 Msa0018240:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr1_1:30470775-30470794 Msa0018240:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr1_1:30470789-30470808 Msa0018240:CDS 55.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr1_1:30469449-30469468 Msa0018240:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr1_1:30470465-30470484 Msa0018240:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr1_1:30470478-30470497 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr1_1:30470550-30470569 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr1_1:30470561-30470580 Msa0018240:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr1_1:30470572-30470591 Msa0018240:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr1_1:30470608-30470627 Msa0018240:CDS 60.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr1_1:30469449-30469468 Msa0018240:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr1_1:30470465-30470484 Msa0018240:CDS 60.0%
CATTAGCCCGCCTGTTGACG+TGG - chr1_1:30470478-30470497 None:intergenic 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr1_1:30470550-30470569 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr1_1:30470561-30470580 Msa0018240:CDS 60.0%
! CTCATGCACCGGTGAAGGTG+AGG + chr1_1:30470572-30470591 Msa0018240:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr1_1:30470608-30470627 Msa0018240:CDS 60.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr1_1:30469379-30469398 Msa0018240:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr1_1:30470468-30470487 Msa0018240:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr1_1:30470469-30470488 Msa0018240:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr1_1:30470563-30470582 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr1_1:30470567-30470586 Msa0018240:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr1_1:30470602-30470621 Msa0018240:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr1_1:30470617-30470636 Msa0018240:CDS 65.0%
GGGTCGTGGATCTGCCCTGA+CGG + chr1_1:30469379-30469398 Msa0018240:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr1_1:30470468-30470487 Msa0018240:CDS 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr1_1:30470469-30470488 Msa0018240:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr1_1:30470563-30470582 None:intergenic 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr1_1:30470567-30470586 Msa0018240:CDS 65.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr1_1:30470602-30470621 Msa0018240:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr1_1:30470617-30470636 Msa0018240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30468782 30471220 30468782 ID=Msa0018240;Name=Msa0018240
chr1_1 mRNA 30468782 30471220 30468782 ID=Msa0018240-mRNA-1;Parent=Msa0018240;Name=Msa0018240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|1|1|4|396|325
chr1_1 exon 30468782 30469070 30468782 ID=Msa0018240-mRNA-1:exon:10153;Parent=Msa0018240-mRNA-1
chr1_1 exon 30469344 30469577 30469344 ID=Msa0018240-mRNA-1:exon:10154;Parent=Msa0018240-mRNA-1
chr1_1 exon 30469824 30469910 30469824 ID=Msa0018240-mRNA-1:exon:10155;Parent=Msa0018240-mRNA-1
chr1_1 exon 30470330 30471220 30470330 ID=Msa0018240-mRNA-1:exon:10156;Parent=Msa0018240-mRNA-1
chr1_1 five_prime_UTR 30468782 30468908 30468782 ID=Msa0018240-mRNA-1:five_prime_utr;Parent=Msa0018240-mRNA-1
chr1_1 CDS 30468909 30469070 30468909 ID=Msa0018240-mRNA-1:cds;Parent=Msa0018240-mRNA-1
chr1_1 CDS 30469344 30469577 30469344 ID=Msa0018240-mRNA-1:cds;Parent=Msa0018240-mRNA-1
chr1_1 CDS 30469824 30469910 30469824 ID=Msa0018240-mRNA-1:cds;Parent=Msa0018240-mRNA-1
chr1_1 CDS 30470330 30470824 30470330 ID=Msa0018240-mRNA-1:cds;Parent=Msa0018240-mRNA-1
chr1_1 three_prime_UTR 30470825 30471220 30470825 ID=Msa0018240-mRNA-1:three_prime_utr;Parent=Msa0018240-mRNA-1
Gene Sequence

>Msa0018240

ATGGGTGGTTGGGCAATTGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCTCTTCAACGTCAAGAAGAAGCCAAACAACTTCTTACTCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCTGCCATCGATGTTGTTGAACTTGTGGTGAGGGAATTGGAAACGGATCCATTATTCAATTCGGGTCGTGGATCTGCCCTGACGGAAAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGATGGACCAAAAAGACGATGCGGTGCCGTTTCAGGTTTAACCACAGTAAAAAATCCAATTTCACTGGCTCGTTTAGTCATGGATAAATCTCCTCATTCCTATCTTGCTTTTAACGGCGCTGAAGATTTTGCTAGACAACAGGGTGTGGAGGTTCTGGACAATGAGTACTTTATCACCGCTGACAATGTTGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGTTTGATTATCGGATTCCATCTGGATACGAAACATGTGGTGCAGCAGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGTGTCTACGCACCTGAAACAGTCGGGTGCGTAGTTGTGGACCGTGAAGGAAGGTGTGCTGCTGCCACGTCAACAGGCGGGCTAATGAACAAAATGATTGGTCGGATTGGTGACTCACCTTTGATAGGAGCCGGGACCTACGCGTGTAACCTTGCTGGCGTCTCATGCACCGGTGAAGGTGAGGCTATCATACGTGGCACTTTGGCGCGAGAGGTGTCGGCTGTGATGGAATACAAAGGTCTTGGTCTTCAAGAAGCAGTGGATTTTGTCATTAAGAATCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAGTAAAGGAGAAGTTGCTTATGGATTTAACTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTAG
Protein sequence

>Msa0018240

MGGWAIAVHGGAGVDPNLPLQRQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEDFARQQGVEVLDNEYFITADNVGMLKLAKEANTILFDYRIPSGYETCGAAVESPMKMNGLPMSVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACNLAGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKNRLDEGYAGLIAVSSKGEVAYGFNCNGMFRGCASEDGFMEVGIWE*