AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055110 MtrunA17_Chr1g0149511 99.475 381 2 0 1 381 1 381 0.0 767
Msa0055110 MtrunA17_Chr7g0237321 28.989 376 226 13 26 371 34 398 1.07e-28 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055110 AT4G32140.1 73.657 391 89 6 5 381 4 394 0.0 559
Msa0055110 AT3G07080.1 26.980 404 245 11 5 371 7 397 9.04e-27 111

Find 124 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGATTGGTTACATTAT+TGG 0.186706 1_2:+9945864 None:intergenic
CCATCTGGGTATTGTTGATT+TGG 0.193530 1_2:-9950394 Msa0055110:five_prime_UTR
CAAAAGCTGTTTGGATATAT+TGG 0.204733 1_2:-9947437 Msa0055110:CDS
GTGTTCTCTCAGACTATTTC+TGG 0.205885 1_2:-9947028 Msa0055110:intron
CTGTGAAACCTGTTTCTTTC+GGG 0.211042 1_2:+9945648 None:intergenic
TATTGAACGGTGATTGATTC+TGG 0.219033 1_2:-9950468 Msa0055110:five_prime_UTR
ACAAAGGAAATTGCTACTTA+TGG 0.246035 1_2:-9948723 Msa0055110:CDS
TAGGTACTGTTGTTATCATC+TGG 0.272041 1_2:-9950327 Msa0055110:CDS
ACTCCCCTTGTGGCCACTTT+GGG 0.275531 1_2:-9946900 Msa0055110:CDS
ATGTCCTATGGTCTATTTAC+TGG 0.282086 1_2:-9947597 Msa0055110:intron
CATCTGGGTATTGTTGATTT+GGG 0.291697 1_2:-9950393 Msa0055110:five_prime_UTR
CCTCCCAATAGCATTCATTA+AGG 0.294336 1_2:-9948955 Msa0055110:CDS
AAGGCTGGGTTGTTTCTTAT+AGG 0.299851 1_2:-9950346 Msa0055110:CDS
CAATCCTTAATGAATGCTAT+TGG 0.302206 1_2:+9948951 None:intergenic
TTGTGTTAACAGGTATTTGC+TGG 0.303613 1_2:-9946208 Msa0055110:intron
TTCACGTATTGGATACAATT+AGG 0.304283 1_2:+9945624 None:intergenic
TTGTTGATTTGGGTTTCTAA+TGG 0.306119 1_2:-9950383 Msa0055110:exon
AACTCCCCTTGTGGCCACTT+TGG 0.318536 1_2:-9946901 Msa0055110:CDS
AACGGAAAAGGTAGAGAAAA+TGG 0.348405 1_2:+9950616 None:intergenic
AGAATATAAAAGATGAATAT+TGG 0.357383 1_2:-9945723 Msa0055110:three_prime_UTR
TAAATATAATGAAACTAGTT+TGG 0.358884 1_2:-9948769 Msa0055110:CDS
TCTGTGAAACCTGTTTCTTT+CGG 0.364393 1_2:+9945647 None:intergenic
ACAAATTATATAACAATGAT+TGG 0.365982 1_2:+9945852 None:intergenic
TAAGCCTATCTTTCACGTAT+TGG 0.374621 1_2:+9945613 None:intergenic
AATCATTGTTATATAATTTG+TGG 0.381425 1_2:-9945850 Msa0055110:three_prime_UTR
AACTTTATCCCGAAAGAAAC+AGG 0.381971 1_2:-9945656 Msa0055110:three_prime_UTR
GCTGTCTTGGTCAGCATGAC+CGG 0.385354 1_2:-9948425 Msa0055110:CDS
GCATGTATAATGCTGAATAA+TGG 0.388353 1_2:+9946823 None:intergenic
CACTATTCCTCTTGCTATGA+TGG 0.389037 1_2:-9946868 Msa0055110:CDS
TGTTGATTTGGGTTTCTAAT+GGG 0.391598 1_2:-9950382 Msa0055110:exon
CTGTCTTGGTCAGCATGACC+GGG 0.400569 1_2:-9948424 Msa0055110:CDS
GATATAGACCTTTCAACTCT+TGG 0.402976 1_2:-9948813 Msa0055110:CDS
CGATTATAAGCAGCCATTTG+TGG 0.406777 1_2:-9949012 Msa0055110:CDS
AGATTGGGCGACAAAGAGAT+TGG 0.407802 1_2:-9946164 Msa0055110:CDS
ATATGCTATGACACTCAATC+TGG 0.409349 1_2:+9946064 None:intergenic
AAGAACCACTTCATCCATTC+TGG 0.413869 1_2:+9947070 None:intergenic
CACAAATGGCTGCTTATAAT+CGG 0.418029 1_2:+9949013 None:intergenic
AATCCTTAATGAATGCTATT+GGG 0.420479 1_2:+9948952 None:intergenic
ACAGTATTGTCATCTACTTC+AGG 0.423690 1_2:-9948512 Msa0055110:CDS
GTTGACGTGCAAAAGCTGTT+TGG 0.432446 1_2:-9947446 Msa0055110:CDS
CGGGGTTGCCATGACAACTC+TGG 0.432955 1_2:-9948405 Msa0055110:CDS
GATAGCAAATCTTTCAGATT+GGG 0.433970 1_2:-9946179 Msa0055110:CDS
ATCAAAAGTAGTTGCTGTCT+TGG 0.435118 1_2:-9948438 Msa0055110:CDS
CCGAGATATGTCACCACAAA+TGG 0.437294 1_2:+9948999 None:intergenic
CTTCTTTCAGCCATGTCCTA+TGG 0.438314 1_2:-9947609 Msa0055110:CDS
GTATCCAATACGTGAAAGAT+AGG 0.439033 1_2:-9945617 Msa0055110:three_prime_UTR
ATTGAACGGTGATTGATTCT+GGG 0.441957 1_2:-9950467 Msa0055110:five_prime_UTR
AATGGACAGCGCTCTCTTGT+TGG 0.443121 1_2:-9947645 Msa0055110:CDS
TTCTGGCGAAGAAGGTGAAC+GGG 0.443641 1_2:-9947468 Msa0055110:CDS
TATTCAGCATTATACATGCT+TGG 0.446661 1_2:-9946819 Msa0055110:CDS
TGATAGCAAATCTTTCAGAT+TGG 0.460487 1_2:-9946180 Msa0055110:CDS
TGACAACTCTGGGCAAGACT+TGG 0.464560 1_2:-9948394 Msa0055110:CDS
CGGTGATTGATTCTGGGATC+TGG 0.467510 1_2:-9950461 Msa0055110:five_prime_UTR
GTTCTTGCAAATGGACTTGT+TGG 0.469958 1_2:-9947053 Msa0055110:CDS
AGGTACTGTTGTTATCATCT+GGG 0.471977 1_2:-9950326 Msa0055110:CDS
TTGCTCAGTCTGGCCATTGT+CGG 0.472274 1_2:-9947132 Msa0055110:intron
TATTGGCTAACATCTCATCT+TGG 0.478569 1_2:+9945881 None:intergenic
CAATAGCATTCATTAAGGAT+TGG 0.479937 1_2:-9948950 Msa0055110:CDS
AATGCAGAAAGACTTTGAAA+TGG 0.481429 1_2:-9948865 Msa0055110:CDS
TCTATAACTTTCTTAAACAC+CGG 0.481506 1_2:-9948926 Msa0055110:CDS
GATTGGGCGACAAAGAGATT+GGG 0.489020 1_2:-9946163 Msa0055110:CDS
CCAGGGCACTCTGCGTCGTA+TGG 0.491982 1_2:-9946926 Msa0055110:intron
GAATCTTGCAACAACGGAAA+AGG 0.494933 1_2:+9950604 None:intergenic
AAACTTAGGTTCAATTCCTA+AGG 0.495621 1_2:+9947109 None:intergenic
TGTTTACACTTGTAGCGCTA+TGG 0.496686 1_2:-9947412 Msa0055110:CDS
CCATTTGTGGTGACATATCT+CGG 0.499618 1_2:-9948999 Msa0055110:CDS
GTCTGGCCATTGTCGGCCTT+AGG 0.506848 1_2:-9947125 Msa0055110:CDS
TGTGTTAACAGGTATTTGCT+GGG 0.511890 1_2:-9946207 Msa0055110:intron
GATGAAGTGGTTCTTGCAAA+TGG 0.516520 1_2:-9947062 Msa0055110:CDS
GAGTGCGGAATCGCAAACTT+AGG 0.519656 1_2:+9947095 None:intergenic
AAAGACTTTGAAATGGAACT+AGG 0.520018 1_2:-9948858 Msa0055110:CDS
GACAACTCTGGGCAAGACTT+GGG 0.523756 1_2:-9948393 Msa0055110:CDS
GGGGTTGCCATGACAACTCT+GGG 0.526807 1_2:-9948404 Msa0055110:CDS
ATGACACTCAATCTGGGTAG+TGG 0.536130 1_2:+9946071 None:intergenic
ATACATGCTTGGATCAGCTC+AGG 0.536294 1_2:-9946808 Msa0055110:intron
AATGGGTAGTTTGAGATACA+AGG 0.538250 1_2:-9950365 Msa0055110:CDS
CAAGCTTCAATTTCCACCAA+AGG 0.539406 1_2:-9950531 Msa0055110:five_prime_UTR
AAACACCGGTCTTCTAAAAG+TGG 0.541403 1_2:-9948912 Msa0055110:CDS
GAAAAGGTAGAGAAAATGGT+TGG 0.542071 1_2:+9950620 None:intergenic
TCATTATATTTAGCCACCAA+TGG 0.542103 1_2:+9948780 None:intergenic
GATGTTGAAATTGTTGCAAG+AGG 0.545838 1_2:+9950575 None:intergenic
TCTTGGAGAGATAGCACCAT+TGG 0.547273 1_2:-9948796 Msa0055110:CDS
CATAGGACATGGCTGAAAGA+AGG 0.549347 1_2:+9947610 None:intergenic
AAATTGTTGCAAGAGGTTGA+AGG 0.551650 1_2:+9950582 None:intergenic
ACCTCTGTTATAAACCAGAT+AGG 0.552608 1_2:+9948687 None:intergenic
CTCTGCCAGAATGGATGAAG+TGG 0.556106 1_2:-9947075 Msa0055110:CDS
TCTTGCTATGATGGCTGACA+TGG 0.559140 1_2:-9946859 Msa0055110:CDS
AAGACTTTGAAATGGAACTA+GGG 0.560811 1_2:-9948857 Msa0055110:CDS
TTATAGTATTTCATTCTCGA+AGG 0.564057 1_2:+9945520 None:intergenic
GGTAGTTTGAGATACAAGGC+TGG 0.567672 1_2:-9950361 Msa0055110:CDS
GATTCCGCACTCTGCCAGAA+TGG 0.568923 1_2:-9947084 Msa0055110:CDS
TATGCTATGACACTCAATCT+GGG 0.569906 1_2:+9946065 None:intergenic
ATGCTGAATAATGGCGACCA+TGG 0.574214 1_2:+9946832 None:intergenic
TAAGAATTTAGTATATTGAA+CGG 0.574803 1_2:-9950481 Msa0055110:five_prime_UTR
AGTCTTGCCCAGAGTTGTCA+TGG 0.578695 1_2:+9948397 None:intergenic
TGAAATGGAACTAGGGAATG+TGG 0.579208 1_2:-9948850 Msa0055110:CDS
ACATGCCCAAAGTGGCCACA+AGG 0.585445 1_2:+9946895 None:intergenic
TAATGAAACTAGTTTGGCAA+AGG 0.593482 1_2:-9948763 Msa0055110:CDS
TGGAGAGATAGCACCATTGG+TGG 0.594581 1_2:-9948793 Msa0055110:CDS
TTTCTGGCGAAGAAGGTGAA+CGG 0.596044 1_2:-9947469 Msa0055110:CDS
CTATCTCTCCAAGAGTTGAA+AGG 0.601207 1_2:+9948805 None:intergenic
ATATCTCGGAGCTTCTCTCA+TGG 0.603748 1_2:-9948985 Msa0055110:CDS
ATGTCAGCCATCATAGCAAG+AGG 0.609091 1_2:+9946861 None:intergenic
ACCTATCTGGTTTATAACAG+AGG 0.609256 1_2:-9948688 Msa0055110:intron
CCAAATCAACAATACCCAGA+TGG 0.609570 1_2:+9950394 None:intergenic
TTGAAGGAATCTTGCAACAA+CGG 0.612786 1_2:+9950598 None:intergenic
CTAACCAGTAAATAGACCAT+AGG 0.614259 1_2:+9947593 None:intergenic
CTCCTCTGCTGAAGTCACCC+AGG 0.614844 1_2:-9950302 Msa0055110:intron
ATTAAATTGCGAGTCATCTG+CGG 0.615941 1_2:+9948370 None:intergenic
TTACACTTGTAGCGCTATGG+TGG 0.616387 1_2:-9947409 Msa0055110:CDS
CAGAGTTGTCATGGCAACCC+CGG 0.616550 1_2:+9948406 None:intergenic
ATGCCCAAAGTGGCCACAAG+GGG 0.623395 1_2:+9946897 None:intergenic
CGTATGGACAACTCCCCTTG+TGG 0.623612 1_2:-9946910 Msa0055110:CDS
CATGCCCAAAGTGGCCACAA+GGG 0.624135 1_2:+9946896 None:intergenic
GTAGTTTGAGATACAAGGCT+GGG 0.626160 1_2:-9950360 Msa0055110:CDS
TCAATTCCTAAGGCCGACAA+TGG 0.628466 1_2:+9947119 None:intergenic
AGTGAGTGACATGCCCAAAG+TGG 0.633604 1_2:+9946887 None:intergenic
TACCTGGGTGACTTCAGCAG+AGG 0.640381 1_2:+9950300 None:intergenic
CCTTAATGAATGCTATTGGG+AGG 0.648867 1_2:+9948955 None:intergenic
TCATCCATTCTGGCAGAGTG+CGG 0.658428 1_2:+9947080 None:intergenic
CTGGCAGAAGCAGAAACGTG+TGG 0.660571 1_2:-9950442 Msa0055110:five_prime_UTR
AGTAAATAGACCATAGGACA+TGG 0.668086 1_2:+9947599 None:intergenic
ATGGCTGACATGGTAATCCA+TGG 0.681409 1_2:-9946849 Msa0055110:CDS
TGTCTTGGTCAGCATGACCG+GGG 0.713176 1_2:-9948423 Msa0055110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAATAATTTTACATCA+TGG + chr1_2:9945845-9945864 None:intergenic 10.0%
!!! GTTTTTTTGTTATATTTTTT+AGG - chr1_2:9945923-9945942 Msa0055110:three_prime_UTR 10.0%
!!! ATCAATTTTTTTTTTAAACT+CGG - chr1_2:9946141-9946160 Msa0055110:exon 10.0%
!! TAAGAATTTAGTATATTGAA+CGG - chr1_2:9945618-9945637 Msa0055110:three_prime_UTR 15.0%
!!! ATTTAATTTTCTCATAAGTT+TGG - chr1_2:9945857-9945876 Msa0055110:three_prime_UTR 15.0%
!! TTAATTATGTCATAGTATAT+AGG - chr1_2:9945992-9946011 Msa0055110:intron 15.0%
!! TAAATATAATGAAACTAGTT+TGG - chr1_2:9947330-9947349 Msa0055110:intron 15.0%
!! TTGAAAAAAAATCAAAGTAT+AGG + chr1_2:9948138-9948157 None:intergenic 15.0%
!!! TCTTTGTAATACTATTTTTT+GGG - chr1_2:9948404-9948423 Msa0055110:CDS 15.0%
!! AAAAAAAAAAAACAAGATCA+AGG + chr1_2:9950089-9950108 None:intergenic 15.0%
!! ACAAATTATATAACAATGAT+TGG + chr1_2:9950250-9950269 None:intergenic 15.0%
!! AATCATTGTTATATAATTTG+TGG - chr1_2:9950249-9950268 Msa0055110:intron 15.0%
!! AGAATATAAAAGATGAATAT+TGG - chr1_2:9950376-9950395 Msa0055110:exon 15.0%
!! AAAAGATGAAAAATTTACCT+GGG + chr1_2:9945817-9945836 None:intergenic 20.0%
!! TCAATTCAATTTAATGATTG+TGG - chr1_2:9945966-9945985 Msa0055110:intron 20.0%
!! TTGTTGTACAATTAACAATA+AGG + chr1_2:9946022-9946041 None:intergenic 20.0%
!! TAATTGTACAACAATCATTT+AGG - chr1_2:9946028-9946047 Msa0055110:three_prime_UTR 20.0%
!!! AGTTTGTGTTTTTTCTATAA+AGG - chr1_2:9946409-9946428 Msa0055110:intron 20.0%
!!! TAGGTGGAAATATTTTTAAA+AGG - chr1_2:9948034-9948053 Msa0055110:intron 20.0%
!! TAAAAGGAATTCAACAATAT+TGG - chr1_2:9948050-9948069 Msa0055110:intron 20.0%
!!! CTCTTTGTAATACTATTTTT+TGG - chr1_2:9948403-9948422 Msa0055110:CDS 20.0%
!!! CATTTTCTTTAAATTATTGC+TGG - chr1_2:9949584-9949603 Msa0055110:intron 20.0%
!! AATCATTAACTATAACTAGA+TGG + chr1_2:9949738-9949757 None:intergenic 20.0%
!! TCTAGTTATAGTTAATGATT+TGG - chr1_2:9949738-9949757 Msa0055110:intron 20.0%
!!! TTATAATTGCTTTTTGTTCA+TGG + chr1_2:9950343-9950362 None:intergenic 20.0%
!!! ATCTTTTATATTCTGATCTT+TGG + chr1_2:9950370-9950389 None:intergenic 20.0%
!!! AAGCTTTTTCACACATTATT+TGG - chr1_2:9945594-9945613 Msa0055110:three_prime_UTR 25.0%
! GAAAAGATGAAAAATTTACC+TGG + chr1_2:9945818-9945837 None:intergenic 25.0%
! ATTATGTCATAGTATATAGG+AGG - chr1_2:9945995-9946014 Msa0055110:intron 25.0%
! GGATACTTCTTAGTAATAAT+TGG - chr1_2:9946557-9946576 Msa0055110:intron 25.0%
! TACTTCTTAGTAATAATTGG+AGG - chr1_2:9946560-9946579 Msa0055110:intron 25.0%
! AAAGAACTTATTGTTTACAC+TGG + chr1_2:9946598-9946617 None:intergenic 25.0%
! TTATATATAATATGCCACTG+CGG - chr1_2:9946749-9946768 Msa0055110:intron 25.0%
! ATCAGAATTTCAAATTGCAA+TGG + chr1_2:9946960-9946979 None:intergenic 25.0%
!! AATTTGAAATTCTGATCAAG+TGG - chr1_2:9946964-9946983 Msa0055110:intron 25.0%
! AATCCTTAATGAATGCTATT+GGG + chr1_2:9947150-9947169 None:intergenic 25.0%
! TCTATAACTTTCTTAAACAC+CGG - chr1_2:9947173-9947192 Msa0055110:intron 25.0%
! AGAAAAAGAACTTACTACAA+AGG - chr1_2:9947360-9947379 Msa0055110:intron 25.0%
!!! TGTATCTTTGTTATTTATGC+TGG - chr1_2:9947458-9947477 Msa0055110:CDS 25.0%
! ACATCATATAGGAAATGTAA+TGG - chr1_2:9947487-9947506 Msa0055110:CDS 25.0%
! ATAGAATAACGAAGCTAATT+TGG + chr1_2:9947786-9947805 None:intergenic 25.0%
! ATCGATTGACATCTTAAAAT+TGG + chr1_2:9947810-9947829 None:intergenic 25.0%
! AACAATATTGGATACTTTCT+TGG - chr1_2:9948062-9948081 Msa0055110:intron 25.0%
! ACAATATTGGATACTTTCTT+GGG - chr1_2:9948063-9948082 Msa0055110:intron 25.0%
! TATTAGGGATATAGTCATAT+AGG + chr1_2:9948186-9948205 None:intergenic 25.0%
! CAAAGGGATCAATTATATTA+GGG + chr1_2:9948201-9948220 None:intergenic 25.0%
! ACAAAGGGATCAATTATATT+AGG + chr1_2:9948202-9948221 None:intergenic 25.0%
! ATATAATTGATCCCTTTGTA+TGG - chr1_2:9948203-9948222 Msa0055110:intron 25.0%
! TGTATTAATATACTCATGTG+AGG + chr1_2:9948252-9948271 None:intergenic 25.0%
!! ATTATGTTGATAGAGATAGA+GGG - chr1_2:9948282-9948301 Msa0055110:intron 25.0%
!!! CATAGCTAATGTTTTAGTTA+TGG - chr1_2:9948327-9948346 Msa0055110:intron 25.0%
! AGTTATGGTGCAAAATATTA+AGG - chr1_2:9948342-9948361 Msa0055110:intron 25.0%
! CATTATTCATCTAGATTATC+TGG + chr1_2:9948569-9948588 None:intergenic 25.0%
!! GTTCTTCTTAAAAAGTTTTC+TGG - chr1_2:9948614-9948633 Msa0055110:intron 25.0%
! AAAAATTCCTATTTACCTCT+TGG - chr1_2:9949437-9949456 Msa0055110:intron 25.0%
! ATTAACATGCATAAAGTCAA+AGG + chr1_2:9949708-9949727 None:intergenic 25.0%
!! ACATATTGATGGAATTGTTT+TGG - chr1_2:9949866-9949885 Msa0055110:intron 25.0%
!!! TGATGTTTTCTTGATTAGTT+TGG - chr1_2:9949970-9949989 Msa0055110:intron 25.0%
!!! GATGTTTTCTTGATTAGTTT+GGG - chr1_2:9949971-9949990 Msa0055110:intron 25.0%
!!! ATGTTTTCTTGATTAGTTTG+GGG - chr1_2:9949972-9949991 Msa0055110:intron 25.0%
!! AAAAAACAAGATCAAGGTTT+TGG + chr1_2:9950083-9950102 None:intergenic 25.0%
!! TTTTGTCGTTGTAATTTTCA+AGG - chr1_2:9950105-9950124 Msa0055110:intron 25.0%
!! ACAATGATTGGTTACATTAT+TGG + chr1_2:9950238-9950257 None:intergenic 25.0%
! TTATAGTATTTCATTCTCGA+AGG + chr1_2:9950582-9950601 None:intergenic 25.0%
!! TTGTTGATTTGGGTTTCTAA+TGG - chr1_2:9945716-9945735 Msa0055110:three_prime_UTR 30.0%
!! TGTTGATTTGGGTTTCTAAT+GGG - chr1_2:9945717-9945736 Msa0055110:three_prime_UTR 30.0%
! GGCTAAGAATGATTTAGTTT+AGG - chr1_2:9946456-9946475 Msa0055110:intron 30.0%
!! ACAATAAGTTCTTTTGAGAG+AGG - chr1_2:9946604-9946623 Msa0055110:intron 30.0%
! TCCTCATTGCTTTGATTTAA+AGG - chr1_2:9946710-9946729 Msa0055110:intron 30.0%
TCCTTTAAATCAAAGCAATG+AGG + chr1_2:9946714-9946733 None:intergenic 30.0%
CAACTTATGCAACATATAAC+TGG + chr1_2:9946787-9946806 None:intergenic 30.0%
! GATCAAGTGGTATCTTTTAT+TGG - chr1_2:9946977-9946996 Msa0055110:intron 30.0%
ATCATTCATGATACAAAGCT+TGG + chr1_2:9947030-9947049 None:intergenic 30.0%
! TCAATTAAAATTTTCTGCGC+AGG - chr1_2:9947054-9947073 Msa0055110:CDS 30.0%
CAATCCTTAATGAATGCTAT+TGG + chr1_2:9947151-9947170 None:intergenic 30.0%
CAATAGCATTCATTAAGGAT+TGG - chr1_2:9947149-9947168 Msa0055110:intron 30.0%
!! TTTTTCCACTTTTAGAAGAC+CGG + chr1_2:9947195-9947214 None:intergenic 30.0%
! AATGCAGAAAGACTTTGAAA+TGG - chr1_2:9947234-9947253 Msa0055110:intron 30.0%
!! AAAGACTTTGAAATGGAACT+AGG - chr1_2:9947241-9947260 Msa0055110:intron 30.0%
!! AAGACTTTGAAATGGAACTA+GGG - chr1_2:9947242-9947261 Msa0055110:intron 30.0%
TCATTATATTTAGCCACCAA+TGG + chr1_2:9947322-9947341 None:intergenic 30.0%
! TAATGAAACTAGTTTGGCAA+AGG - chr1_2:9947336-9947355 Msa0055110:intron 30.0%
! ACAAAGGAAATTGCTACTTA+TGG - chr1_2:9947376-9947395 Msa0055110:intron 30.0%
! TCTTTTCATTGGTGTGTTAA+TGG - chr1_2:9947619-9947638 Msa0055110:CDS 30.0%
! CTTTTCATTGGTGTGTTAAT+GGG - chr1_2:9947620-9947639 Msa0055110:CDS 30.0%
!! TGTCAATCGATTTTTCTAGT+AGG - chr1_2:9947819-9947838 Msa0055110:intron 30.0%
! AAGATGTATCTGAGAAGTAT+AGG - chr1_2:9948015-9948034 Msa0055110:intron 30.0%
TATAGGTATCTGACAAGTAT+CGG + chr1_2:9948121-9948140 None:intergenic 30.0%
ATTAATATACTCATGTGAGG+AGG + chr1_2:9948249-9948268 None:intergenic 30.0%
CTCTATCTCTATCAACATAA+TGG + chr1_2:9948283-9948302 None:intergenic 30.0%
! CATTATGTTGATAGAGATAG+AGG - chr1_2:9948281-9948300 Msa0055110:intron 30.0%
TTGATATTTGTGTTCAGCAA+TGG - chr1_2:9948436-9948455 Msa0055110:CDS 30.0%
CAAAAGCTGTTTGGATATAT+TGG - chr1_2:9948662-9948681 Msa0055110:intron 30.0%
AAACACAAAAACCAAGTTAG+AGG + chr1_2:9948797-9948816 None:intergenic 30.0%
!!! TTTTTTCTTTTTGCTCAGTC+TGG - chr1_2:9948957-9948976 Msa0055110:CDS 30.0%
AAACTTAGGTTCAATTCCTA+AGG + chr1_2:9948993-9949012 None:intergenic 30.0%
GCATGTATAATGCTGAATAA+TGG + chr1_2:9949279-9949298 None:intergenic 30.0%
TATTCAGCATTATACATGCT+TGG - chr1_2:9949280-9949299 Msa0055110:intron 30.0%
TTTAACACCAAGAGGTAAAT+AGG + chr1_2:9949447-9949466 None:intergenic 30.0%
ACAAAACATTTAACACCAAG+AGG + chr1_2:9949455-9949474 None:intergenic 30.0%
!!! CTTGGTGTTAAATGTTTTGT+TGG - chr1_2:9949455-9949474 Msa0055110:intron 30.0%
ACATCAAACATGCATTCAAT+AGG + chr1_2:9949521-9949540 None:intergenic 30.0%
!! GAATCTTTGAAACAGACATT+GGG + chr1_2:9949637-9949656 None:intergenic 30.0%
!! TGAATCTTTGAAACAGACAT+TGG + chr1_2:9949638-9949657 None:intergenic 30.0%
TAATCTAGACGAAATTTCCT+AGG + chr1_2:9949776-9949795 None:intergenic 30.0%
TTAATAGCCAGTTGACAATA+TGG + chr1_2:9949801-9949820 None:intergenic 30.0%
! CGTTTTTGTTGACATATTGA+TGG - chr1_2:9949855-9949874 Msa0055110:intron 30.0%
TGATAGCAAATCTTTCAGAT+TGG - chr1_2:9949919-9949938 Msa0055110:intron 30.0%
GATAGCAAATCTTTCAGATT+GGG - chr1_2:9949920-9949939 Msa0055110:intron 30.0%
!!! GGCAACACTTATTCTTTTTT+TGG - chr1_2:9949993-9950012 Msa0055110:intron 30.0%
TACACAGAACAAATACATCA+TGG + chr1_2:9950154-9950173 None:intergenic 30.0%
TTCACGTATTGGATACAATT+AGG + chr1_2:9950478-9950497 None:intergenic 30.0%
GAAAAGGTAGAGAAAATGGT+TGG + chr1_2:9945482-9945501 None:intergenic 35.0%
AACGGAAAAGGTAGAGAAAA+TGG + chr1_2:9945486-9945505 None:intergenic 35.0%
TTGAAGGAATCTTGCAACAA+CGG + chr1_2:9945504-9945523 None:intergenic 35.0%
AAATTGTTGCAAGAGGTTGA+AGG + chr1_2:9945520-9945539 None:intergenic 35.0%
GATGTTGAAATTGTTGCAAG+AGG + chr1_2:9945527-9945546 None:intergenic 35.0%
TGTGAAAAAGCTTCAACCTT+TGG + chr1_2:9945587-9945606 None:intergenic 35.0%
! TATTGAACGGTGATTGATTC+TGG - chr1_2:9945631-9945650 Msa0055110:three_prime_UTR 35.0%
! ATTGAACGGTGATTGATTCT+GGG - chr1_2:9945632-9945651 Msa0055110:three_prime_UTR 35.0%
!!! TTTCTGCACTTTTTTCCATC+TGG - chr1_2:9945690-9945709 Msa0055110:three_prime_UTR 35.0%
!!! TTCTGCACTTTTTTCCATCT+GGG - chr1_2:9945691-9945710 Msa0055110:three_prime_UTR 35.0%
!! CATCTGGGTATTGTTGATTT+GGG - chr1_2:9945706-9945725 Msa0055110:three_prime_UTR 35.0%
! AATGGGTAGTTTGAGATACA+AGG - chr1_2:9945734-9945753 Msa0055110:three_prime_UTR 35.0%
! TAGGTACTGTTGTTATCATC+TGG - chr1_2:9945772-9945791 Msa0055110:three_prime_UTR 35.0%
! AGGTACTGTTGTTATCATCT+GGG - chr1_2:9945773-9945792 Msa0055110:three_prime_UTR 35.0%
ACAACAATCATTTAGGAAGC+TGG - chr1_2:9946035-9946054 Msa0055110:three_prime_UTR 35.0%
TTGCTTCATGTGACTTGATT+TGG - chr1_2:9946092-9946111 Msa0055110:three_prime_UTR 35.0%
TAAACTCGGTATCCAGATTA+AGG - chr1_2:9946155-9946174 Msa0055110:exon 35.0%
ATTAAGGACCGACTAATCTA+GGG - chr1_2:9946171-9946190 Msa0055110:CDS 35.0%
AAGAAAATGATTGAAACCCC+CGG + chr1_2:9946371-9946390 None:intergenic 35.0%
! TTTTCTATAAAGGTCGTGTG+AGG - chr1_2:9946419-9946438 Msa0055110:intron 35.0%
TCCAATAAGCCAATCTCATT+GGG + chr1_2:9946500-9946519 None:intergenic 35.0%
TTCCAATAAGCCAATCTCAT+TGG + chr1_2:9946501-9946520 None:intergenic 35.0%
TTAGTAATAATTGGAGGTCC+TGG - chr1_2:9946566-9946585 Msa0055110:intron 35.0%
GTAATCCTGTTCAAGACTAA+CGG + chr1_2:9946646-9946665 None:intergenic 35.0%
GCAACATATAACTGGAACAA+TGG + chr1_2:9946779-9946798 None:intergenic 35.0%
TCTAAGTCCTTATCTAAGCA+CGG - chr1_2:9946910-9946929 Msa0055110:CDS 35.0%
TATTAGCACACTGCATGATA+TGG + chr1_2:9947006-9947025 None:intergenic 35.0%
CACAAATGGCTGCTTATAAT+CGG + chr1_2:9947089-9947108 None:intergenic 35.0%
AGTGGAAAAAATGCAGAAAG+CGG - chr1_2:9947205-9947224 Msa0055110:intron 35.0%
GATATAGACCTTTCAACTCT+TGG - chr1_2:9947286-9947305 Msa0055110:intron 35.0%
! GATTTTACATTGCACCTATC+TGG - chr1_2:9947398-9947417 Msa0055110:intron 35.0%
! ACCTATCTGGTTTATAACAG+AGG - chr1_2:9947411-9947430 Msa0055110:CDS 35.0%
ACCTCTGTTATAAACCAGAT+AGG + chr1_2:9947415-9947434 None:intergenic 35.0%
GCTGGTATATGACATCATAT+AGG - chr1_2:9947476-9947495 Msa0055110:CDS 35.0%
ACAGTATTGTCATCTACTTC+AGG - chr1_2:9947587-9947606 Msa0055110:intron 35.0%
ATCAAAAGTAGTTGCTGTCT+TGG - chr1_2:9947661-9947680 Msa0055110:intron 35.0%
ATTAAATTGCGAGTCATCTG+CGG + chr1_2:9947732-9947751 None:intergenic 35.0%
GGTCATCAAAGAGATAGAAA+GGG + chr1_2:9947765-9947784 None:intergenic 35.0%
TGGTCATCAAAGAGATAGAA+AGG + chr1_2:9947766-9947785 None:intergenic 35.0%
! ATGTATCTGAGAAGTATAGG+TGG - chr1_2:9948018-9948037 Msa0055110:intron 35.0%
TCAATGTGATGCCATACAAA+GGG + chr1_2:9948217-9948236 None:intergenic 35.0%
TTCAATGTGATGCCATACAA+AGG + chr1_2:9948218-9948237 None:intergenic 35.0%
! AGATAGAGGGTATAAGAGAA+AGG - chr1_2:9948295-9948314 Msa0055110:intron 35.0%
! TCTCTTGTTGGAGATCTTTT+TGG - chr1_2:9948466-9948485 Msa0055110:CDS 35.0%
AGTAAATAGACCATAGGACA+TGG + chr1_2:9948503-9948522 None:intergenic 35.0%
ATGTCCTATGGTCTATTTAC+TGG - chr1_2:9948502-9948521 Msa0055110:CDS 35.0%
CTAACCAGTAAATAGACCAT+AGG + chr1_2:9948509-9948528 None:intergenic 35.0%
!! AAAAAGTTTTCTGGCGAAGA+AGG - chr1_2:9948623-9948642 Msa0055110:intron 35.0%
GTGATCATATAAGTCGAGTT+TGG + chr1_2:9948757-9948776 None:intergenic 35.0%
AGTTAGAGGAGCAAATGAAA+AGG + chr1_2:9948783-9948802 None:intergenic 35.0%
TTTCATTTGCTCCTCTAACT+TGG - chr1_2:9948783-9948802 Msa0055110:CDS 35.0%
AGTTTGTAACAGTAGCCAAT+CGG - chr1_2:9949362-9949381 Msa0055110:intron 35.0%
ATAAGTCATCCTATCATCGA+TGG + chr1_2:9949483-9949502 None:intergenic 35.0%
TTGAATGCATGTTTGATGTC+TGG - chr1_2:9949522-9949541 Msa0055110:intron 35.0%
GATTAGACCATATTGTCAAC+TGG - chr1_2:9949791-9949810 Msa0055110:intron 35.0%
!!! TGTTTTGGCATTGTGTTAAC+AGG - chr1_2:9949881-9949900 Msa0055110:intron 35.0%
TTGTGTTAACAGGTATTTGC+TGG - chr1_2:9949891-9949910 Msa0055110:intron 35.0%
TGTGTTAACAGGTATTTGCT+GGG - chr1_2:9949892-9949911 Msa0055110:intron 35.0%
TATGCTATGACACTCAATCT+GGG + chr1_2:9950037-9950056 None:intergenic 35.0%
ATATGCTATGACACTCAATC+TGG + chr1_2:9950038-9950057 None:intergenic 35.0%
! TATTGGCTAACATCTCATCT+TGG + chr1_2:9950221-9950240 None:intergenic 35.0%
AACTTTATCCCGAAAGAAAC+AGG - chr1_2:9950443-9950462 Msa0055110:five_prime_UTR 35.0%
! TCTGTGAAACCTGTTTCTTT+CGG + chr1_2:9950455-9950474 None:intergenic 35.0%
GTATCCAATACGTGAAAGAT+AGG - chr1_2:9950482-9950501 Msa0055110:five_prime_UTR 35.0%
TAAGCCTATCTTTCACGTAT+TGG + chr1_2:9950489-9950508 None:intergenic 35.0%
GAATCTTGCAACAACGGAAA+AGG + chr1_2:9945498-9945517 None:intergenic 40.0%
CAAGCTTCAATTTCCACCAA+AGG - chr1_2:9945568-9945587 Msa0055110:three_prime_UTR 40.0%
GAAAAAGCTTCAACCTTTGG+TGG + chr1_2:9945584-9945603 None:intergenic 40.0%
CCAAATCAACAATACCCAGA+TGG + chr1_2:9945708-9945727 None:intergenic 40.0%
! CCATCTGGGTATTGTTGATT+TGG - chr1_2:9945705-9945724 Msa0055110:three_prime_UTR 40.0%
! GTAGTTTGAGATACAAGGCT+GGG - chr1_2:9945739-9945758 Msa0055110:three_prime_UTR 40.0%
!! AAGGCTGGGTTGTTTCTTAT+AGG - chr1_2:9945753-9945772 Msa0055110:three_prime_UTR 40.0%
AAGCTGGTGTATTTGAGAGA+GGG - chr1_2:9946051-9946070 Msa0055110:three_prime_UTR 40.0%
TGTATTTGAGAGAGGGATGT+AGG - chr1_2:9946058-9946077 Msa0055110:three_prime_UTR 40.0%
! AGATTAGTCGGTCCTTAATC+TGG + chr1_2:9946170-9946189 None:intergenic 40.0%
GATTAAGGACCGACTAATCT+AGG - chr1_2:9946170-9946189 Msa0055110:CDS 40.0%
TTAAGGACCGACTAATCTAG+GGG - chr1_2:9946172-9946191 Msa0055110:CDS 40.0%
GATTTGTCCCCTAGATTAGT+CGG + chr1_2:9946182-9946201 None:intergenic 40.0%
AAATCCCACTGTCTACTAGT+GGG - chr1_2:9946197-9946216 Msa0055110:CDS 40.0%
AATTTATGTGTTGGGCGAGA+CGG + chr1_2:9946262-9946281 None:intergenic 40.0%
TCGCCCAACACATAAATTGT+TGG - chr1_2:9946264-9946283 Msa0055110:intron 40.0%
GCGCCAACAATTTATGTGTT+GGG + chr1_2:9946270-9946289 None:intergenic 40.0%
AGCGCCAACAATTTATGTGT+TGG + chr1_2:9946271-9946290 None:intergenic 40.0%
ACACATAAATTGTTGGCGCT+TGG - chr1_2:9946271-9946290 Msa0055110:intron 40.0%
CACATAAATTGTTGGCGCTT+GGG - chr1_2:9946272-9946291 Msa0055110:intron 40.0%
ACATAAATTGTTGGCGCTTG+GGG - chr1_2:9946273-9946292 Msa0055110:intron 40.0%
AGAAAATGATTGAAACCCCC+GGG + chr1_2:9946370-9946389 None:intergenic 40.0%
ACCTAATGACCCAATGAGAT+TGG - chr1_2:9946488-9946507 Msa0055110:intron 40.0%
!! ACCCAATGAGATTGGCTTAT+TGG - chr1_2:9946496-9946515 Msa0055110:intron 40.0%
AAGTGGAGAGGATGTGTATA+AGG - chr1_2:9946536-9946555 Msa0055110:intron 40.0%
TCAAGACTAACGGAGCAAAA+GGG + chr1_2:9946636-9946655 None:intergenic 40.0%
TTCAAGACTAACGGAGCAAA+AGG + chr1_2:9946637-9946656 None:intergenic 40.0%
GTCTTGAACAGGATTACCTT+TGG - chr1_2:9946649-9946668 Msa0055110:intron 40.0%
TGAACAGGATTACCTTTGGT+AGG - chr1_2:9946653-9946672 Msa0055110:intron 40.0%
CACAGATATCATCCTACCAA+AGG + chr1_2:9946668-9946687 None:intergenic 40.0%
CTTTGGTAGGATGATATCTG+TGG - chr1_2:9946666-9946685 Msa0055110:intron 40.0%
! CAATGAGGACTGCATTTTTG+GGG + chr1_2:9946699-9946718 None:intergenic 40.0%
! GCAATGAGGACTGCATTTTT+GGG + chr1_2:9946700-9946719 None:intergenic 40.0%
! AGCAATGAGGACTGCATTTT+TGG + chr1_2:9946701-9946720 None:intergenic 40.0%
GTCTTACATATGTAGACCAG+AGG - chr1_2:9946813-9946832 Msa0055110:CDS 40.0%
ACACTGTTGTCTAAGCTTGA+AGG - chr1_2:9946836-9946855 Msa0055110:CDS 40.0%
CGATTATAAGCAGCCATTTG+TGG - chr1_2:9947087-9947106 Msa0055110:CDS 40.0%
CCATTTGTGGTGACATATCT+CGG - chr1_2:9947100-9947119 Msa0055110:CDS 40.0%
CCTTAATGAATGCTATTGGG+AGG + chr1_2:9947147-9947166 None:intergenic 40.0%
CCTCCCAATAGCATTCATTA+AGG - chr1_2:9947144-9947163 Msa0055110:intron 40.0%
! AAACACCGGTCTTCTAAAAG+TGG - chr1_2:9947187-9947206 Msa0055110:intron 40.0%
AAAAATGCAGAAAGCGGCAA+TGG - chr1_2:9947211-9947230 Msa0055110:intron 40.0%
TGAAATGGAACTAGGGAATG+TGG - chr1_2:9947249-9947268 Msa0055110:intron 40.0%
CTATCTCTCCAAGAGTTGAA+AGG + chr1_2:9947297-9947316 None:intergenic 40.0%
! GGACTCTTCACTCTTTTCAT+TGG - chr1_2:9947608-9947627 Msa0055110:CDS 40.0%
TGTTTGTAAACCAGCTCAGA+GGG + chr1_2:9947868-9947887 None:intergenic 40.0%
ATGTTTGTAAACCAGCTCAG+AGG + chr1_2:9947869-9947888 None:intergenic 40.0%
! GTGAAGTACTAGACACGATT+TGG - chr1_2:9948092-9948111 Msa0055110:intron 40.0%
TGTTTACACTTGTAGCGCTA+TGG - chr1_2:9948687-9948706 Msa0055110:intron 40.0%
AAGAACCACTTCATCCATTC+TGG + chr1_2:9949032-9949051 None:intergenic 40.0%
GATGAAGTGGTTCTTGCAAA+TGG - chr1_2:9949037-9949056 Msa0055110:intron 40.0%
! GTTCTTGCAAATGGACTTGT+TGG - chr1_2:9949046-9949065 Msa0055110:intron 40.0%
GTGTTCTCTCAGACTATTTC+TGG - chr1_2:9949071-9949090 Msa0055110:intron 40.0%
TTTACTTGATCTACCACCCA+GGG - chr1_2:9949156-9949175 Msa0055110:intron 40.0%
! CACTATTCCTCTTGCTATGA+TGG - chr1_2:9949231-9949250 Msa0055110:intron 40.0%
TGAAAGAAAGATCCTCCGAT+TGG + chr1_2:9949380-9949399 None:intergenic 40.0%
!! TTGTTGGTTCCATCGATGAT+AGG - chr1_2:9949471-9949490 Msa0055110:intron 40.0%
! ATGCATTCAATAGGAAGTGC+TGG + chr1_2:9949512-9949531 None:intergenic 40.0%
TTTGGTAAGTGTCATAGCCT+AGG - chr1_2:9949756-9949775 Msa0055110:intron 40.0%
! CTGTGAAACCTGTTTCTTTC+GGG + chr1_2:9950454-9950473 None:intergenic 40.0%
! GGTAGTTTGAGATACAAGGC+TGG - chr1_2:9945738-9945757 Msa0055110:three_prime_UTR 45.0%
GAAGCTGGTGTATTTGAGAG+AGG - chr1_2:9946050-9946069 Msa0055110:three_prime_UTR 45.0%
!! GAGAGGGATGTAGGTTGATA+TGG - chr1_2:9946067-9946086 Msa0055110:three_prime_UTR 45.0%
CAAATCCCACTGTCTACTAG+TGG - chr1_2:9946196-9946215 Msa0055110:CDS 45.0%
AATCCCACTGTCTACTAGTG+GGG - chr1_2:9946198-9946217 Msa0055110:CDS 45.0%
TGGGGACCTAGTCAAAGTTA+GGG - chr1_2:9946216-9946235 Msa0055110:intron 45.0%
GCTTTGCCCTAACTTTGACT+AGG + chr1_2:9946225-9946244 None:intergenic 45.0%
AGTTAGGGCAAAGCTCTGTA+TGG - chr1_2:9946231-9946250 Msa0055110:intron 45.0%
CATAAATTGTTGGCGCTTGG+GGG - chr1_2:9946274-9946293 Msa0055110:intron 45.0%
TTTGAACCTGAGACCTAGAG+AGG - chr1_2:9946298-9946317 Msa0055110:intron 45.0%
AAAATGATTGAAACCCCCGG+GGG + chr1_2:9946368-9946387 None:intergenic 45.0%
GAAAATGATTGAAACCCCCG+GGG + chr1_2:9946369-9946388 None:intergenic 45.0%
GCCAATCTCATTGGGTCATT+AGG + chr1_2:9946492-9946511 None:intergenic 45.0%
! TGGCTTATTGGAAGCATGCT+TGG - chr1_2:9946508-9946527 Msa0055110:intron 45.0%
ATACACATCCTCTCCACTTG+TGG + chr1_2:9946535-9946554 None:intergenic 45.0%
TGTTTACACTGGATCGAACC+AGG + chr1_2:9946587-9946606 None:intergenic 45.0%
CAAGACTAACGGAGCAAAAG+GGG + chr1_2:9946635-9946654 None:intergenic 45.0%
!! TTGCTCCGTTAGTCTTGAAC+AGG - chr1_2:9946638-9946657 Msa0055110:intron 45.0%
AGTCCTTATCTAAGCACGGT+TGG - chr1_2:9946914-9946933 Msa0055110:CDS 45.0%
TCTCCAACCGTGCTTAGATA+AGG + chr1_2:9946920-9946939 None:intergenic 45.0%
CCGAGATATGTCACCACAAA+TGG + chr1_2:9947103-9947122 None:intergenic 45.0%
ATATCTCGGAGCTTCTCTCA+TGG - chr1_2:9947114-9947133 Msa0055110:CDS 45.0%
TCTTGGAGAGATAGCACCAT+TGG - chr1_2:9947303-9947322 Msa0055110:intron 45.0%
TAAACCAGCTCAGAGGGTAA+AGG + chr1_2:9947862-9947881 None:intergenic 45.0%
CATAGGACATGGCTGAAAGA+AGG + chr1_2:9948492-9948511 None:intergenic 45.0%
CTTCTTTCAGCCATGTCCTA+TGG - chr1_2:9948490-9948509 Msa0055110:CDS 45.0%
! TTTCTGGCGAAGAAGGTGAA+CGG - chr1_2:9948630-9948649 Msa0055110:intron 45.0%
GTTGACGTGCAAAAGCTGTT+TGG - chr1_2:9948653-9948672 Msa0055110:intron 45.0%
TTACACTTGTAGCGCTATGG+TGG - chr1_2:9948690-9948709 Msa0055110:CDS 45.0%
GCATTAACCAGTGCCAACTT+CGG - chr1_2:9948876-9948895 Msa0055110:CDS 45.0%
TCAATTCCTAAGGCCGACAA+TGG + chr1_2:9948983-9949002 None:intergenic 45.0%
GTTTACTTGATCTACCACCC+AGG - chr1_2:9949155-9949174 Msa0055110:intron 45.0%
ATGTCAGCCATCATAGCAAG+AGG + chr1_2:9949241-9949260 None:intergenic 45.0%
! TCTTGCTATGATGGCTGACA+TGG - chr1_2:9949240-9949259 Msa0055110:intron 45.0%
ATGGCTGACATGGTAATCCA+TGG - chr1_2:9949250-9949269 Msa0055110:intron 45.0%
ATGCTGAATAATGGCGACCA+TGG + chr1_2:9949270-9949289 None:intergenic 45.0%
ATACATGCTTGGATCAGCTC+AGG - chr1_2:9949291-9949310 Msa0055110:intron 45.0%
TTGTAACAGTAGCCAATCGG+AGG - chr1_2:9949365-9949384 Msa0055110:intron 45.0%
AGATTGGGCGACAAAGAGAT+TGG - chr1_2:9949935-9949954 Msa0055110:intron 45.0%
GATTGGGCGACAAAGAGATT+GGG - chr1_2:9949936-9949955 Msa0055110:intron 45.0%
ATGACACTCAATCTGGGTAG+TGG + chr1_2:9950031-9950050 None:intergenic 45.0%
!! CGGTGATTGATTCTGGGATC+TGG - chr1_2:9945638-9945657 Msa0055110:three_prime_UTR 50.0%
GTGGGGACCTAGTCAAAGTT+AGG - chr1_2:9946215-9946234 Msa0055110:intron 50.0%
TGTGAGGTCGAAAGCTCTGT+TGG - chr1_2:9946435-9946454 Msa0055110:intron 50.0%
AAGCATGCTTGGTCCACAAG+TGG - chr1_2:9946519-9946538 Msa0055110:intron 50.0%
GCTTAGACAACAGTGTCCTC+TGG + chr1_2:9946832-9946851 None:intergenic 50.0%
TGGAGAGATAGCACCATTGG+TGG - chr1_2:9947306-9947325 Msa0055110:intron 50.0%
AGTCTTGCCCAGAGTTGTCA+TGG + chr1_2:9947705-9947724 None:intergenic 50.0%
TGACAACTCTGGGCAAGACT+TGG - chr1_2:9947705-9947724 Msa0055110:intron 50.0%
GACAACTCTGGGCAAGACTT+GGG - chr1_2:9947706-9947725 Msa0055110:intron 50.0%
AATGGACAGCGCTCTCTTGT+TGG - chr1_2:9948454-9948473 Msa0055110:CDS 50.0%
TTCTGGCGAAGAAGGTGAAC+GGG - chr1_2:9948631-9948650 Msa0055110:intron 50.0%
TTAACCAGTGCCAACTTCGG+TGG - chr1_2:9948879-9948898 Msa0055110:CDS 50.0%
TAACCAGTGCCAACTTCGGT+GGG - chr1_2:9948880-9948899 Msa0055110:CDS 50.0%
TTGCTCAGTCTGGCCATTGT+CGG - chr1_2:9948967-9948986 Msa0055110:CDS 50.0%
GAGTGCGGAATCGCAAACTT+AGG + chr1_2:9949007-9949026 None:intergenic 50.0%
TCATCCATTCTGGCAGAGTG+CGG + chr1_2:9949022-9949041 None:intergenic 50.0%
CTCTGCCAGAATGGATGAAG+TGG - chr1_2:9949024-9949043 Msa0055110:CDS 50.0%
AGTGAGTGACATGCCCAAAG+TGG + chr1_2:9949215-9949234 None:intergenic 50.0%
TGCTTGGATCAGCTCAGGTA+TGG - chr1_2:9949296-9949315 Msa0055110:intron 50.0%
GAATGCGAAACCACATGCGT+TGG + chr1_2:9949555-9949574 None:intergenic 50.0%
CTGGCAGAAGCAGAAACGTG+TGG - chr1_2:9945657-9945676 Msa0055110:three_prime_UTR 55.0%
TACCTGGGTGACTTCAGCAG+AGG + chr1_2:9945802-9945821 None:intergenic 55.0%
GGTCCCCACTAGTAGACAGT+GGG + chr1_2:9946204-9946223 None:intergenic 55.0%
AGGTCCCCACTAGTAGACAG+TGG + chr1_2:9946205-9946224 None:intergenic 55.0%
TGTGCTCCTCTCTAGGTCTC+AGG + chr1_2:9946307-9946326 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCTCT+AGG + chr1_2:9946314-9946333 None:intergenic 55.0%
! CTAGAGAGGAGCACACTCCT+AGG - chr1_2:9946312-9946331 Msa0055110:intron 55.0%
GTGGTGAAGACTTGGGACCT+AGG + chr1_2:9946332-9946351 None:intergenic 55.0%
TGGCCTCGTGGTGAAGACTT+GGG + chr1_2:9946339-9946358 None:intergenic 55.0%
TTGGCCTCGTGGTGAAGACT+TGG + chr1_2:9946340-9946359 None:intergenic 55.0%
TGCTTGGTCCACAAGTGGAG+AGG - chr1_2:9946524-9946543 Msa0055110:intron 55.0%
GCTGTCTTGGTCAGCATGAC+CGG - chr1_2:9947674-9947693 Msa0055110:intron 55.0%
CTGTCTTGGTCAGCATGACC+GGG - chr1_2:9947675-9947694 Msa0055110:intron 55.0%
TGTCTTGGTCAGCATGACCG+GGG - chr1_2:9947676-9947695 Msa0055110:intron 55.0%
CAGAGTTGTCATGGCAACCC+CGG + chr1_2:9947696-9947715 None:intergenic 55.0%
GGGGTTGCCATGACAACTCT+GGG - chr1_2:9947695-9947714 Msa0055110:intron 55.0%
GCATCCTTTACCCTCTGAGC+TGG - chr1_2:9947855-9947874 Msa0055110:intron 55.0%
CCAAACTAGCCCACCGAAGT+TGG + chr1_2:9948892-9948911 None:intergenic 55.0%
!! CCAACTTCGGTGGGCTAGTT+TGG - chr1_2:9948889-9948908 Msa0055110:CDS 55.0%
GATTCCGCACTCTGCCAGAA+TGG - chr1_2:9949015-9949034 Msa0055110:CDS 55.0%
CGTATGGACAACTCCCCTTG+TGG - chr1_2:9949189-9949208 Msa0055110:intron 55.0%
AACTCCCCTTGTGGCCACTT+TGG - chr1_2:9949198-9949217 Msa0055110:intron 55.0%
! ACTCCCCTTGTGGCCACTTT+GGG - chr1_2:9949199-9949218 Msa0055110:intron 55.0%
ATGCCCAAAGTGGCCACAAG+GGG + chr1_2:9949205-9949224 None:intergenic 55.0%
CATGCCCAAAGTGGCCACAA+GGG + chr1_2:9949206-9949225 None:intergenic 55.0%
ACATGCCCAAAGTGGCCACA+AGG + chr1_2:9949207-9949226 None:intergenic 55.0%
TGGCACAACACCAACGCATG+TGG - chr1_2:9949542-9949561 Msa0055110:intron 55.0%
CTCCTCTGCTGAAGTCACCC+AGG - chr1_2:9945797-9945816 Msa0055110:three_prime_UTR 60.0%
GGTCCCAAGTCTTCACCACG+AGG - chr1_2:9946333-9946352 Msa0055110:intron 60.0%
GATTGAAACCCCCGGGGGTT+GGG + chr1_2:9946363-9946382 None:intergenic 60.0%
TGATTGAAACCCCCGGGGGT+TGG + chr1_2:9946364-9946383 None:intergenic 60.0%
!! GGAACAATGGAGCACCGCAG+TGG + chr1_2:9946766-9946785 None:intergenic 60.0%
CGGGGTTGCCATGACAACTC+TGG - chr1_2:9947694-9947713 Msa0055110:intron 60.0%
TAGCCCACCGAAGTTGGCAC+TGG + chr1_2:9948886-9948905 None:intergenic 60.0%
GTCTGGCCATTGTCGGCCTT+AGG - chr1_2:9948974-9948993 Msa0055110:CDS 60.0%
! CATACGACGCAGAGTGCCCT+GGG + chr1_2:9949175-9949194 None:intergenic 60.0%
! CCATACGACGCAGAGTGCCC+TGG + chr1_2:9949176-9949195 None:intergenic 65.0%
! CCAGGGCACTCTGCGTCGTA+TGG - chr1_2:9949173-9949192 Msa0055110:intron 65.0%
CACGAGGCCAACCCAACCCC+CGG - chr1_2:9946349-9946368 Msa0055110:intron 70.0%
ACGAGGCCAACCCAACCCCC+GGG - chr1_2:9946350-9946369 Msa0055110:intron 70.0%
GAAACCCCCGGGGGTTGGGT+TGG + chr1_2:9946359-9946378 None:intergenic 70.0%
! ACGACGCAGAGTGCCCTGGG+TGG + chr1_2:9949172-9949191 None:intergenic 70.0%
!! CGGGGGTTGGGTTGGCCTCG+TGG + chr1_2:9946351-9946370 None:intergenic 75.0%
CGAGGCCAACCCAACCCCCG+GGG - chr1_2:9946351-9946370 Msa0055110:intron 75.0%
GAGGCCAACCCAACCCCCGG+GGG - chr1_2:9946352-9946371 Msa0055110:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9945466 9950655 9945466 ID=Msa0055110;Name=Msa0055110
chr1_2 mRNA 9945466 9950655 9945466 ID=Msa0055110-mRNA-1;Parent=Msa0055110;Name=Msa0055110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=269|1|1|1|0.87|0.77|9|655|381
chr1_2 exon 9945466 9945965 9945466 ID=Msa0055110-mRNA-1:exon:3733;Parent=Msa0055110-mRNA-1
chr1_2 exon 9946001 9946218 9946001 ID=Msa0055110-mRNA-1:exon:3732;Parent=Msa0055110-mRNA-1
chr1_2 exon 9946809 9946944 9946809 ID=Msa0055110-mRNA-1:exon:3731;Parent=Msa0055110-mRNA-1
chr1_2 exon 9947029 9947146 9947029 ID=Msa0055110-mRNA-1:exon:3730;Parent=Msa0055110-mRNA-1
chr1_2 exon 9947405 9947506 9947405 ID=Msa0055110-mRNA-1:exon:3729;Parent=Msa0055110-mRNA-1
chr1_2 exon 9947598 9947668 9947598 ID=Msa0055110-mRNA-1:exon:3728;Parent=Msa0055110-mRNA-1
chr1_2 exon 9948365 9948579 9948365 ID=Msa0055110-mRNA-1:exon:3727;Parent=Msa0055110-mRNA-1
chr1_2 exon 9948689 9949045 9948689 ID=Msa0055110-mRNA-1:exon:3726;Parent=Msa0055110-mRNA-1
chr1_2 exon 9950303 9950655 9950303 ID=Msa0055110-mRNA-1:exon:3725;Parent=Msa0055110-mRNA-1
chr1_2 five_prime_UTR 9950387 9950655 9950387 ID=Msa0055110-mRNA-1:five_prime_utr;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9950303 9950386 9950303 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9948689 9949045 9948689 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9948365 9948579 9948365 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9947598 9947668 9947598 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9947405 9947506 9947405 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9947029 9947146 9947029 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9946809 9946944 9946809 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 CDS 9946156 9946218 9946156 ID=Msa0055110-mRNA-1:cds;Parent=Msa0055110-mRNA-1
chr1_2 three_prime_UTR 9946001 9946155 9946001 ID=Msa0055110-mRNA-1:three_prime_utr;Parent=Msa0055110-mRNA-1
chr1_2 three_prime_UTR 9945466 9945965 9945466 ID=Msa0055110-mRNA-1:three_prime_utr;Parent=Msa0055110-mRNA-1
Gene Sequence

>Msa0055110

ATGGGTAGTTTGAGATACAAGGCTGGGTTGTTTCTTATAGGTACTGTTGTTATCATCTGGGTCTCCTCTGCTGAAGTCACCCAGGATATTTATACCGATTATAAGCAGCCATTTGTGGTGACATATCTCGGAGCTTCTCTCATGGTACTTTACCTCCCAATAGCATTCATTAAGGATTGGTTCTATAACTTTCTTAAACACCGGTCTTCTAAAAGTGGAAAAAATGCAGAAAGCGGCAATGGAATGCAGAAAGACTTTGAAATGGAACTAGGGAATGTGGTTCGAAAAGACAGTGATATAGACCTTTCAACTCTTGGAGAGATAGCACCATTGGTGGCTAAATATAATGAAACTAGTTTGGCAAAGGAAGAAAAAGAACTTACTACAAAGGAAATTGCTACTTATGGATTTTACATTGCACCTATCTGGTTTATAACAGAGTATCTATCAAATGCTGCTCTTGCACGTACTAGTGTTGCGAGTACAACAGTATTGTCATCTACTTCAGGACTCTTCACTCTTTTCATTGGTGTGTTAATGGGTGAAGACACTTTAAATATATCAAAAGTAGTTGCTGTCTTGGTCAGCATGACCGGGGTTGCCATGACAACTCTGGGCAAGACTTGGGCCGCAGATGACTCGCAATTTAATGCTTCCAATGGACAGCGCTCTCTTGTTGGAGATCTTTTTGGCCTTCTTTCAGCCATGTCCTATGGTCTATTTACTGTTCTTCTTAAAAAGTTTTCTGGCGAAGAAGGTGAACGGGTTGACGTGCAAAAGCTGTTTGGATATATTGGATTGTTTACACTTGTAGCGCTATGGTGGCTTATCTGGCCATTGTCGGCCTTAGGAATTGAACCTAAGTTTGCGATTCCGCACTCTGCCAGAATGGATGAAGTGGTTCTTGCAAATGGACTTGTTGGAAGTGTTCTCTCAGACTATTTCTGGGCACTCTGCGTCGTATGGACAACTCCCCTTGTGGCCACTTTGGGCATGTCACTCACTATTCCTCTTGCTATGATGGCTGACATGGTAATCCATGGTCGCCATTATTCAGCATTATACATGCTTGGATCAGCTCAGGTATTTGCTGGGTTTGTGATAGCAAATCTTTCAGATTGGGCGACAAAGAGATTGGGATTATAA
Protein sequence

>Msa0055110

MGSLRYKAGLFLIGTVVIIWVSSAEVTQDIYTDYKQPFVVTYLGASLMVLYLPIAFIKDWFYNFLKHRSSKSGKNAESGNGMQKDFEMELGNVVRKDSDIDLSTLGEIAPLVAKYNETSLAKEEKELTTKEIATYGFYIAPIWFITEYLSNAALARTSVASTTVLSSTSGLFTLFIGVLMGEDTLNISKVVAVLVSMTGVAMTTLGKTWAADDSQFNASNGQRSLVGDLFGLLSAMSYGLFTVLLKKFSGEEGERVDVQKLFGYIGLFTLVALWWLIWPLSALGIEPKFAIPHSARMDEVVLANGLVGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMMADMVIHGRHYSALYMLGSAQVFAGFVIANLSDWATKRLGL*