Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101170 | XP_013465800.1 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101170 | sp|Q03730|YMB8_YEAST | 32.181 | 376 | 228 | 9 | 5 | 372 | 12 | 368 | 1.14e-53 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101170 | A0A072VDI4 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 767 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0101170 | -0.829250 | 5.717341e-55 | -8.615850e-47 |
| Msa0006050 | Msa0101170 | -0.812213 | 4.746463e-51 | -8.615850e-47 |
| Msa0014410 | Msa0101170 | -0.819670 | 1.028013e-52 | -8.615850e-47 |
| Msa0018470 | Msa0101170 | -0.801455 | 8.931811e-49 | -8.615850e-47 |
| Msa0037500 | Msa0101170 | 0.816158 | 6.386835e-52 | -8.615850e-47 |
| Msa0044180 | Msa0101170 | -0.812796 | 3.540270e-51 | -8.615850e-47 |
| Msa0055110 | Msa0101170 | 0.886151 | 4.387295e-72 | -8.615850e-47 |
| Msa0059880 | Msa0101170 | 0.817802 | 2.730313e-52 | -8.615850e-47 |
| Msa0064550 | Msa0101170 | -0.837936 | 3.872925e-57 | -8.615850e-47 |
| Msa0072860 | Msa0101170 | -0.800341 | 1.508571e-48 | -8.615850e-47 |
| Msa0074220 | Msa0101170 | -0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0101170 | Msa0108070 | -0.813123 | 3.000991e-51 | -8.615850e-47 |
| Msa0101170 | Msa0109490 | -0.829609 | 4.678381e-55 | -8.615850e-47 |
| Msa0101170 | Msa0125600 | 0.803360 | 3.618579e-49 | -8.615850e-47 |
| Msa0101170 | Msa0131090 | -0.807301 | 5.404709e-50 | -8.615850e-47 |
| Msa0101170 | Msa0147540 | -0.801337 | 9.444313e-49 | -8.615850e-47 |
| Msa0101170 | Msa0150910 | 0.808321 | 3.279497e-50 | -8.615850e-47 |
| Msa0101170 | Msa0154220 | -0.809073 | 2.265422e-50 | -8.615850e-47 |
| Msa0101170 | Msa0154240 | -0.843732 | 1.169365e-58 | -8.615850e-47 |
| Msa0101170 | Msa0154270 | -0.845547 | 3.795314e-59 | -8.615850e-47 |
| Msa0101170 | Msa0187980 | -0.816007 | 6.904421e-52 | -8.615850e-47 |
| Msa0101170 | Msa0190670 | 0.802803 | 4.716835e-49 | -8.615850e-47 |
| Msa0101170 | Msa0200840 | -0.811154 | 8.066502e-51 | -8.615850e-47 |
| Msa0101170 | Msa0200870 | -0.809323 | 2.002529e-50 | -8.615850e-47 |
| Msa0101170 | Msa0224370 | -0.821710 | 3.493536e-53 | -8.615850e-47 |
| Msa0101170 | Msa0224400 | -0.831364 | 1.740980e-55 | -8.615850e-47 |
| Msa0101170 | Msa0225880 | -0.832302 | 1.021492e-55 | -8.615850e-47 |
| Msa0101170 | Msa0253160 | -0.841879 | 3.635423e-58 | -8.615850e-47 |
| Msa0101170 | Msa0260190 | -0.830285 | 3.201183e-55 | -8.615850e-47 |
| Msa0101170 | Msa0260470 | -0.822733 | 2.023034e-53 | -8.615850e-47 |
| Msa0101170 | Msa0269240 | 0.826312 | 2.906341e-54 | -8.615850e-47 |
| Msa0101170 | Msa0291940 | -0.840832 | 6.855017e-58 | -8.615850e-47 |
| Msa0101170 | Msa0295570 | -0.806210 | 9.189166e-50 | -8.615850e-47 |
| Msa0101170 | Msa0295980 | 0.801450 | 8.951790e-49 | -8.615850e-47 |
| Msa0101170 | Msa0303440 | -0.816670 | 4.907160e-52 | -8.615850e-47 |
| Msa0101170 | Msa0303500 | -0.830349 | 3.088232e-55 | -8.615850e-47 |
| Msa0101170 | Msa0304110 | -0.826495 | 2.629674e-54 | -8.615850e-47 |
| Msa0101170 | Msa0333940 | 0.806047 | 9.941247e-50 | -8.615850e-47 |
| Msa0101170 | Msa0341190 | -0.814677 | 1.363826e-51 | -8.615850e-47 |
| Msa0101170 | Msa0344680 | -0.820047 | 8.429048e-53 | -8.615850e-47 |
| Msa0101170 | Msa0354390 | -0.801882 | 7.298987e-49 | -8.615850e-47 |
| Msa0101170 | Msa0358290 | -0.807340 | 5.302693e-50 | -8.615850e-47 |
| Msa0101170 | Msa0377280 | -0.812610 | 3.887049e-51 | -8.615850e-47 |
| Msa0101170 | Msa0392050 | -0.821259 | 4.441030e-53 | -8.615850e-47 |
| Msa0101170 | Msa0401340 | -0.801627 | 8.233838e-49 | -8.615850e-47 |
| Msa0101170 | Msa0404060 | -0.800225 | 1.592587e-48 | -8.615850e-47 |
| Msa0101170 | Msa0404070 | -0.810604 | 1.061242e-50 | -8.615850e-47 |
| Msa0101170 | Msa0404690 | -0.829757 | 4.306243e-55 | -8.615850e-47 |
| Msa0101170 | Msa0437550 | -0.807048 | 6.114120e-50 | -8.615850e-47 |
| Msa0101170 | Msa0448120 | -0.817639 | 2.971194e-52 | -8.615850e-47 |
| Msa0101170 | Msa0469950 | -0.820105 | 8.175763e-53 | -8.615850e-47 |
| Msa0101170 | Msa0491760 | 0.806525 | 7.884330e-50 | -8.615850e-47 |
| Msa0101170 | Msa0525270 | -0.809053 | 2.287749e-50 | -8.615850e-47 |
| Msa0101170 | Msa0525280 | -0.805848 | 1.094911e-49 | -8.615850e-47 |
| Msa0101170 | Msa0530340 | -0.828198 | 1.027169e-54 | -8.615850e-47 |
| Msa0101170 | Msa0545230 | -0.835686 | 1.451915e-56 | -8.615850e-47 |
| Msa0101170 | Msa0547200 | 0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0101170 | Msa0549540 | -0.823136 | 1.629298e-53 | -8.615850e-47 |
| Msa0101170 | Msa0549760 | -0.804634 | 1.965881e-49 | -8.615850e-47 |
| Msa0101170 | Msa0569230 | -0.802845 | 4.623628e-49 | -8.615850e-47 |
| Msa0101170 | Msa0569930 | -0.809251 | 2.074778e-50 | -8.615850e-47 |
| Msa0101170 | Msa0570680 | -0.801353 | 9.371453e-49 | -8.615850e-47 |
| Msa0101170 | Msa0600820 | -0.828644 | 8.018492e-55 | -8.615850e-47 |
| Msa0101170 | Msa0601920 | 0.822291 | 2.563010e-53 | -8.615850e-47 |
| Msa0101170 | Msa0604880 | -0.817058 | 4.015863e-52 | -8.615850e-47 |
| Msa0101170 | Msa0605250 | -0.825412 | 4.753637e-54 | -8.615850e-47 |
| Msa0101170 | Msa0622250 | -0.820255 | 7.553458e-53 | -8.615850e-47 |
| Msa0101170 | Msa0627050 | -0.846279 | 2.400395e-59 | -8.615850e-47 |
| Msa0101170 | Msa0643020 | 0.806250 | 9.010823e-50 | -8.615850e-47 |
| Msa0101170 | Msa0646190 | -0.827383 | 1.613111e-54 | -8.615850e-47 |
| Msa0101170 | Msa0651310 | -0.812093 | 5.043367e-51 | -8.615850e-47 |
| Msa0101170 | Msa0679780 | -0.851336 | 9.483960e-61 | -8.615850e-47 |
| Msa0101170 | Msa0682730 | 0.826762 | 2.270913e-54 | -8.615850e-47 |
| Msa0101170 | Msa0684560 | 0.800778 | 1.228671e-48 | -8.615850e-47 |
| Msa0101170 | Msa0693400 | -0.817462 | 3.256835e-52 | -8.615850e-47 |
| Msa0101170 | Msa0705810 | -0.806393 | 8.406862e-50 | -8.615850e-47 |
| Msa0101170 | Msa0748330 | -0.817060 | 4.010576e-52 | -8.615850e-47 |
| Msa0101170 | Msa0776290 | -0.807403 | 5.140999e-50 | -8.615850e-47 |
| Msa0101170 | Msa0793100 | -0.809217 | 2.110815e-50 | -8.615850e-47 |
| Msa0101170 | Msa0803530 | -0.800811 | 1.209745e-48 | -8.615850e-47 |
| Msa0101170 | Msa0813630 | -0.821381 | 4.160779e-53 | -8.615850e-47 |
| Msa0101170 | Msa0818550 | -0.804371 | 2.230393e-49 | -8.615850e-47 |
| Msa0101170 | Msa0879650 | -0.817991 | 2.473838e-52 | -8.615850e-47 |
| Msa0101170 | Msa0899700 | -0.803036 | 4.221493e-49 | -8.615850e-47 |
| Msa0101170 | Msa0936690 | -0.813778 | 2.154465e-51 | -8.615850e-47 |
| Msa0101170 | Msa0944690 | -0.800342 | 1.507584e-48 | -8.615850e-47 |
| Msa0101170 | Msa0968780 | -0.822711 | 2.046379e-53 | -8.615850e-47 |
| Msa0101170 | Msa0984000 | -0.848665 | 5.304056e-60 | -8.615850e-47 |
| Msa0101170 | Msa0999590 | -0.814270 | 1.677794e-51 | -8.615850e-47 |
| Msa0101170 | Msa1036020 | 0.813673 | 2.271869e-51 | -8.615850e-47 |
| Msa0101170 | Msa1040730 | 0.817610 | 3.015293e-52 | -8.615850e-47 |
| Msa0101170 | Msa1053690 | -0.820129 | 8.072301e-53 | -8.615850e-47 |
| Msa0101170 | Msa1076520 | -0.804655 | 1.946833e-49 | -8.615850e-47 |
| Msa0101170 | Msa1082150 | -0.814201 | 1.737954e-51 | -8.615850e-47 |
| Msa0101170 | Msa1108540 | 0.804304 | 2.303243e-49 | -8.615850e-47 |
| Msa0101170 | Msa1127910 | 0.822456 | 2.346586e-53 | -8.615850e-47 |
| Msa0101170 | Msa1144730 | -0.821977 | 3.029642e-53 | -8.615850e-47 |
| Msa0101170 | Msa1152290 | 0.809476 | 1.857281e-50 | -8.615850e-47 |
| Msa0101170 | Msa1166960 | -0.817253 | 3.629804e-52 | -8.615850e-47 |
| Msa0101170 | Msa1173380 | -0.828156 | 1.051339e-54 | -8.615850e-47 |
| Msa0101170 | Msa1180050 | -0.809966 | 1.457123e-50 | -8.615850e-47 |
| Msa0101170 | Msa1182800 | -0.811997 | 5.291839e-51 | -8.615850e-47 |
| Msa0101170 | Msa1184010 | -0.832939 | 7.098955e-56 | -8.615850e-47 |
| Msa0101170 | Msa1211260 | -0.800644 | 1.308580e-48 | -8.615850e-47 |
| Msa0101170 | Msa1211300 | -0.827634 | 1.403614e-54 | -8.615850e-47 |
| Msa0101170 | Msa1211390 | -0.823737 | 1.178765e-53 | -8.615850e-47 |
| Msa0101170 | Msa1216600 | 0.812553 | 4.000315e-51 | -8.615850e-47 |
| Msa0101170 | Msa1222030 | 0.808367 | 3.206466e-50 | -8.615850e-47 |
| Msa0101170 | Msa1226880 | -0.807149 | 5.818900e-50 | -8.615850e-47 |
| Msa0101170 | Msa1228350 | -0.817523 | 3.154777e-52 | -8.615850e-47 |
| Msa0101170 | Msa1228460 | -0.804702 | 1.902844e-49 | -8.615850e-47 |
| Msa0101170 | Msa1245120 | 0.807540 | 4.809210e-50 | -8.615850e-47 |
| Msa0101170 | Msa1248220 | -0.801393 | 9.195644e-49 | -8.615850e-47 |
| Msa0101170 | Msa1255020 | -0.804178 | 2.446564e-49 | -8.615850e-47 |
| Msa0101170 | Msa1266710 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0101170 | Msa1270770 | -0.803402 | 3.547150e-49 | -8.615850e-47 |
| Msa0101170 | Msa1306200 | -0.809710 | 1.653882e-50 | -8.615850e-47 |
| Msa0101170 | Msa1349810 | -0.858944 | 5.817747e-63 | -8.615850e-47 |
| Msa0101170 | Msa1356730 | -0.800003 | 1.766885e-48 | -8.615850e-47 |
| Msa0101170 | Msa1358340 | -0.812877 | 3.397618e-51 | -8.615850e-47 |
| Msa0101170 | Msa1359890 | -0.823612 | 1.261294e-53 | -8.615850e-47 |
| Msa0101170 | Msa1369180 | -0.805158 | 1.527679e-49 | -8.615850e-47 |
| Msa0101170 | Msa1387480 | 0.821994 | 3.002161e-53 | -8.615850e-47 |
| Msa0101170 | Msa1389350 | 0.800842 | 1.192112e-48 | -8.615850e-47 |
| Msa0101170 | Msa1394900 | -0.833060 | 6.623276e-56 | -8.615850e-47 |
| Msa0101170 | Msa1405380 | -0.813005 | 3.185299e-51 | -8.615850e-47 |
| Msa0101170 | Msa1413900 | -0.824727 | 6.900571e-54 | -8.615850e-47 |
| Msa0101170 | Msa1421120 | 0.806567 | 7.724854e-50 | -8.615850e-47 |
| Msa0101170 | Msa1450630 | -0.808501 | 3.002914e-50 | -8.615850e-47 |
| Msa0101170 | Msa1450780 | -0.806061 | 9.874386e-50 | -8.615850e-47 |
| Msa0101170 | Msa1459540 | -0.837863 | 4.043506e-57 | -8.615850e-47 |
| Msa0101170 | Msa1466130 | 0.835968 | 1.231703e-56 | -8.615850e-47 |
| Msa0101170 | Msa1466350 | -0.843570 | 1.291774e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101170 | MtrunA17_Chr1g0149511 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 767 |
| Msa0101170 | MtrunA17_Chr7g0237321 | 28.989 | 376 | 226 | 13 | 26 | 371 | 34 | 398 | 1.07e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101170 | AT4G32140.1 | 73.657 | 391 | 89 | 6 | 5 | 381 | 4 | 394 | 0.0 | 559 |
| Msa0101170 | AT3G07080.1 | 26.980 | 404 | 245 | 11 | 5 | 371 | 7 | 397 | 9.04e-27 | 111 |
Find 116 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGATTGGTTACATTAT+TGG | 0.186706 | 1_3:-7711681 | None:intergenic |
| CCATCTGGGTATTGTTGATT+TGG | 0.193530 | 1_3:+7707137 | Msa0101170:five_prime_UTR |
| CAAAAGCTGTTTGGATATAT+TGG | 0.204733 | 1_3:+7710089 | Msa0101170:CDS |
| GTGTTCTCTCAGACTATTTC+TGG | 0.205885 | 1_3:+7710498 | Msa0101170:CDS |
| TATTGAACGGTGATTGATTC+TGG | 0.219033 | 1_3:+7707063 | Msa0101170:five_prime_UTR |
| ACAAAGGAAATTGCTACTTA+TGG | 0.246035 | 1_3:+7708803 | Msa0101170:CDS |
| TAGGTACTGTTGTTATCATC+TGG | 0.272041 | 1_3:+7707204 | Msa0101170:CDS |
| ACTCCCCTTGTGGCCACTTT+GGG | 0.275531 | 1_3:+7710626 | Msa0101170:CDS |
| ATGTCCTATGGTCTATTTAC+TGG | 0.282086 | 1_3:+7709929 | Msa0101170:CDS |
| CATCTGGGTATTGTTGATTT+GGG | 0.291697 | 1_3:+7707138 | Msa0101170:five_prime_UTR |
| CCTCCCAATAGCATTCATTA+AGG | 0.294336 | 1_3:+7708571 | Msa0101170:CDS |
| AAGGCTGGGTTGTTTCTTAT+AGG | 0.299851 | 1_3:+7707185 | Msa0101170:CDS |
| CAATCCTTAATGAATGCTAT+TGG | 0.302206 | 1_3:-7708575 | None:intergenic |
| TTGTGTTAACAGGTATTTGC+TGG | 0.303613 | 1_3:+7711318 | Msa0101170:intron |
| TTGTTGATTTGGGTTTCTAA+TGG | 0.306119 | 1_3:+7707148 | Msa0101170:exon |
| AACTCCCCTTGTGGCCACTT+TGG | 0.318536 | 1_3:+7710625 | Msa0101170:CDS |
| AACGGAAAAGGTAGAGAAAA+TGG | 0.348405 | 1_3:-7706915 | None:intergenic |
| TAAATATAATGAAACTAGTT+TGG | 0.358884 | 1_3:+7708757 | Msa0101170:CDS |
| ACAAATTATATAACAATGAT+TGG | 0.365982 | 1_3:-7711693 | None:intergenic |
| GCTGTCTTGGTCAGCATGAC+CGG | 0.385354 | 1_3:+7709101 | Msa0101170:CDS |
| GCATGTATAATGCTGAATAA+TGG | 0.388353 | 1_3:-7710703 | None:intergenic |
| CACTATTCCTCTTGCTATGA+TGG | 0.389037 | 1_3:+7710658 | Msa0101170:CDS |
| TGTTGATTTGGGTTTCTAAT+GGG | 0.391598 | 1_3:+7707149 | Msa0101170:exon |
| CTGTCTTGGTCAGCATGACC+GGG | 0.400569 | 1_3:+7709102 | Msa0101170:CDS |
| GATATAGACCTTTCAACTCT+TGG | 0.402976 | 1_3:+7708713 | Msa0101170:CDS |
| CGATTATAAGCAGCCATTTG+TGG | 0.406777 | 1_3:+7708514 | Msa0101170:CDS |
| AGATTGGGCGACAAAGAGAT+TGG | 0.407802 | 1_3:+7711362 | Msa0101170:CDS |
| ATATGCTATGACACTCAATC+TGG | 0.409349 | 1_3:-7711462 | None:intergenic |
| AAGAACCACTTCATCCATTC+TGG | 0.413869 | 1_3:-7710456 | None:intergenic |
| CACAAATGGCTGCTTATAAT+CGG | 0.418029 | 1_3:-7708513 | None:intergenic |
| AATCCTTAATGAATGCTATT+GGG | 0.420479 | 1_3:-7708574 | None:intergenic |
| ACAGTATTGTCATCTACTTC+AGG | 0.423690 | 1_3:+7709014 | Msa0101170:CDS |
| GTTGACGTGCAAAAGCTGTT+TGG | 0.432446 | 1_3:+7710080 | Msa0101170:CDS |
| CGGGGTTGCCATGACAACTC+TGG | 0.432955 | 1_3:+7709121 | Msa0101170:CDS |
| GATAGCAAATCTTTCAGATT+GGG | 0.433970 | 1_3:+7711347 | Msa0101170:CDS |
| ATCAAAAGTAGTTGCTGTCT+TGG | 0.435118 | 1_3:+7709088 | Msa0101170:CDS |
| CCGAGATATGTCACCACAAA+TGG | 0.437294 | 1_3:-7708527 | None:intergenic |
| CTTCTTTCAGCCATGTCCTA+TGG | 0.438314 | 1_3:+7709917 | Msa0101170:CDS |
| ATTGAACGGTGATTGATTCT+GGG | 0.441957 | 1_3:+7707064 | Msa0101170:five_prime_UTR |
| AATGGACAGCGCTCTCTTGT+TGG | 0.443121 | 1_3:+7709881 | Msa0101170:CDS |
| TTCTGGCGAAGAAGGTGAAC+GGG | 0.443641 | 1_3:+7710058 | Msa0101170:CDS |
| TATTCAGCATTATACATGCT+TGG | 0.446661 | 1_3:+7710707 | Msa0101170:CDS |
| TGATAGCAAATCTTTCAGAT+TGG | 0.460487 | 1_3:+7711346 | Msa0101170:CDS |
| TGACAACTCTGGGCAAGACT+TGG | 0.464560 | 1_3:+7709132 | Msa0101170:CDS |
| CGGTGATTGATTCTGGGATC+TGG | 0.467510 | 1_3:+7707070 | Msa0101170:five_prime_UTR |
| GTTCTTGCAAATGGACTTGT+TGG | 0.469958 | 1_3:+7710473 | Msa0101170:CDS |
| AGGTACTGTTGTTATCATCT+GGG | 0.471977 | 1_3:+7707205 | Msa0101170:CDS |
| TTGCTCAGTCTGGCCATTGT+CGG | 0.472274 | 1_3:+7710394 | Msa0101170:intron |
| TATTGGCTAACATCTCATCT+TGG | 0.478569 | 1_3:-7711664 | None:intergenic |
| CAATAGCATTCATTAAGGAT+TGG | 0.479937 | 1_3:+7708576 | Msa0101170:CDS |
| AATGCAGAAAGACTTTGAAA+TGG | 0.481429 | 1_3:+7708661 | Msa0101170:CDS |
| TCTATAACTTTCTTAAACAC+CGG | 0.481506 | 1_3:+7708600 | Msa0101170:CDS |
| GATTGGGCGACAAAGAGATT+GGG | 0.489020 | 1_3:+7711363 | Msa0101170:CDS |
| CCAGGGCACTCTGCGTCGTA+TGG | 0.491982 | 1_3:+7710600 | Msa0101170:intron |
| GAATCTTGCAACAACGGAAA+AGG | 0.494933 | 1_3:-7706927 | None:intergenic |
| AAACTTAGGTTCAATTCCTA+AGG | 0.495621 | 1_3:-7710417 | None:intergenic |
| TGTTTACACTTGTAGCGCTA+TGG | 0.496686 | 1_3:+7710114 | Msa0101170:CDS |
| CCATTTGTGGTGACATATCT+CGG | 0.499618 | 1_3:+7708527 | Msa0101170:CDS |
| GTCTGGCCATTGTCGGCCTT+AGG | 0.506848 | 1_3:+7710401 | Msa0101170:intron |
| TGTGTTAACAGGTATTTGCT+GGG | 0.511890 | 1_3:+7711319 | Msa0101170:intron |
| GATGAAGTGGTTCTTGCAAA+TGG | 0.516520 | 1_3:+7710464 | Msa0101170:CDS |
| GAGTGCGGAATCGCAAACTT+AGG | 0.519656 | 1_3:-7710431 | None:intergenic |
| AAAGACTTTGAAATGGAACT+AGG | 0.520018 | 1_3:+7708668 | Msa0101170:CDS |
| GACAACTCTGGGCAAGACTT+GGG | 0.523756 | 1_3:+7709133 | Msa0101170:CDS |
| GGGGTTGCCATGACAACTCT+GGG | 0.526807 | 1_3:+7709122 | Msa0101170:CDS |
| ATGACACTCAATCTGGGTAG+TGG | 0.536130 | 1_3:-7711455 | None:intergenic |
| ATACATGCTTGGATCAGCTC+AGG | 0.536294 | 1_3:+7710718 | Msa0101170:CDS |
| AATGGGTAGTTTGAGATACA+AGG | 0.538250 | 1_3:+7707166 | Msa0101170:exon |
| CAAGCTTCAATTTCCACCAA+AGG | 0.539406 | 1_3:+7707000 | Msa0101170:five_prime_UTR |
| TACACAGAACAAATACATCA+TGG | 0.541039 | 1_3:-7711597 | None:intergenic |
| AAACACCGGTCTTCTAAAAG+TGG | 0.541403 | 1_3:+7708614 | Msa0101170:CDS |
| GAAAAGGTAGAGAAAATGGT+TGG | 0.542071 | 1_3:-7706911 | None:intergenic |
| TCATTATATTTAGCCACCAA+TGG | 0.542103 | 1_3:-7708746 | None:intergenic |
| GATGTTGAAATTGTTGCAAG+AGG | 0.545838 | 1_3:-7706956 | None:intergenic |
| TCTTGGAGAGATAGCACCAT+TGG | 0.547273 | 1_3:+7708730 | Msa0101170:CDS |
| CATAGGACATGGCTGAAAGA+AGG | 0.549347 | 1_3:-7709916 | None:intergenic |
| AAATTGTTGCAAGAGGTTGA+AGG | 0.551650 | 1_3:-7706949 | None:intergenic |
| ACCTCTGTTATAAACCAGAT+AGG | 0.552608 | 1_3:-7708839 | None:intergenic |
| CTCTGCCAGAATGGATGAAG+TGG | 0.556106 | 1_3:+7710451 | Msa0101170:CDS |
| TCTTGCTATGATGGCTGACA+TGG | 0.559140 | 1_3:+7710667 | Msa0101170:CDS |
| AAGACTTTGAAATGGAACTA+GGG | 0.560811 | 1_3:+7708669 | Msa0101170:CDS |
| GGTAGTTTGAGATACAAGGC+TGG | 0.567672 | 1_3:+7707170 | Msa0101170:CDS |
| GATTCCGCACTCTGCCAGAA+TGG | 0.568923 | 1_3:+7710442 | Msa0101170:CDS |
| TATGCTATGACACTCAATCT+GGG | 0.569906 | 1_3:-7711461 | None:intergenic |
| ATGCTGAATAATGGCGACCA+TGG | 0.574214 | 1_3:-7710694 | None:intergenic |
| TAAGAATTTAGTATATTGAA+CGG | 0.574803 | 1_3:+7707050 | Msa0101170:five_prime_UTR |
| AGTCTTGCCCAGAGTTGTCA+TGG | 0.578695 | 1_3:-7709129 | None:intergenic |
| TGAAATGGAACTAGGGAATG+TGG | 0.579208 | 1_3:+7708676 | Msa0101170:CDS |
| ACATGCCCAAAGTGGCCACA+AGG | 0.585445 | 1_3:-7710631 | None:intergenic |
| TAATGAAACTAGTTTGGCAA+AGG | 0.593482 | 1_3:+7708763 | Msa0101170:CDS |
| TGGAGAGATAGCACCATTGG+TGG | 0.594581 | 1_3:+7708733 | Msa0101170:CDS |
| TTTCTGGCGAAGAAGGTGAA+CGG | 0.596044 | 1_3:+7710057 | Msa0101170:CDS |
| CTATCTCTCCAAGAGTTGAA+AGG | 0.601207 | 1_3:-7708721 | None:intergenic |
| ATATCTCGGAGCTTCTCTCA+TGG | 0.603748 | 1_3:+7708541 | Msa0101170:CDS |
| ATGTCAGCCATCATAGCAAG+AGG | 0.609091 | 1_3:-7710665 | None:intergenic |
| ACCTATCTGGTTTATAACAG+AGG | 0.609256 | 1_3:+7708838 | Msa0101170:CDS |
| CCAAATCAACAATACCCAGA+TGG | 0.609570 | 1_3:-7707137 | None:intergenic |
| TTGAAGGAATCTTGCAACAA+CGG | 0.612786 | 1_3:-7706933 | None:intergenic |
| CTAACCAGTAAATAGACCAT+AGG | 0.614259 | 1_3:-7709933 | None:intergenic |
| CTCCTCTGCTGAAGTCACCC+AGG | 0.614844 | 1_3:+7707229 | Msa0101170:CDS |
| ATTAAATTGCGAGTCATCTG+CGG | 0.615941 | 1_3:-7709156 | None:intergenic |
| TTACACTTGTAGCGCTATGG+TGG | 0.616387 | 1_3:+7710117 | Msa0101170:CDS |
| CAGAGTTGTCATGGCAACCC+CGG | 0.616550 | 1_3:-7709120 | None:intergenic |
| ATGCCCAAAGTGGCCACAAG+GGG | 0.623395 | 1_3:-7710629 | None:intergenic |
| CGTATGGACAACTCCCCTTG+TGG | 0.623612 | 1_3:+7710616 | Msa0101170:CDS |
| CATGCCCAAAGTGGCCACAA+GGG | 0.624135 | 1_3:-7710630 | None:intergenic |
| GTAGTTTGAGATACAAGGCT+GGG | 0.626160 | 1_3:+7707171 | Msa0101170:CDS |
| TCAATTCCTAAGGCCGACAA+TGG | 0.628466 | 1_3:-7710407 | None:intergenic |
| AGTGAGTGACATGCCCAAAG+TGG | 0.633604 | 1_3:-7710639 | None:intergenic |
| TACCTGGGTGACTTCAGCAG+AGG | 0.640381 | 1_3:-7707231 | None:intergenic |
| CCTTAATGAATGCTATTGGG+AGG | 0.648867 | 1_3:-7708571 | None:intergenic |
| TCATCCATTCTGGCAGAGTG+CGG | 0.658428 | 1_3:-7710446 | None:intergenic |
| CTGGCAGAAGCAGAAACGTG+TGG | 0.660571 | 1_3:+7707089 | Msa0101170:five_prime_UTR |
| AGTAAATAGACCATAGGACA+TGG | 0.668086 | 1_3:-7709927 | None:intergenic |
| ATGGCTGACATGGTAATCCA+TGG | 0.681409 | 1_3:+7710677 | Msa0101170:CDS |
| TGTCTTGGTCAGCATGACCG+GGG | 0.713176 | 1_3:+7709103 | Msa0101170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTGTTATATTTTTT+AGG | + | chr1_3:7707355-7707374 | Msa0101170:intron | 10.0% |
| !!! | TCAATTTTTTTTTTTAAACT+CGG | + | chr1_3:7707574-7707593 | Msa0101170:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAGATCA+AGG | - | chr1_3:7711516-7711535 | None:intergenic | 10.0% |
| !! | TAAGAATTTAGTATATTGAA+CGG | + | chr1_3:7707050-7707069 | Msa0101170:five_prime_UTR | 15.0% |
| !!! | ATTTAATTTTCTCATAAGTT+TGG | + | chr1_3:7707289-7707308 | Msa0101170:intron | 15.0% |
| !! | TTAATTATGTCATAGTATAT+AGG | + | chr1_3:7707424-7707443 | Msa0101170:intron | 15.0% |
| !! | TAAATATAATGAAACTAGTT+TGG | + | chr1_3:7708757-7708776 | Msa0101170:CDS | 15.0% |
| !! | TTGAAAAAAAATCAAAGTAT+AGG | - | chr1_3:7709565-7709584 | None:intergenic | 15.0% |
| !!! | TCTTTGTAATACTATTTTTT+GGG | + | chr1_3:7709831-7709850 | Msa0101170:intron | 15.0% |
| !! | AAAAGATGAAAAATTTACCT+GGG | - | chr1_3:7707249-7707268 | None:intergenic | 20.0% |
| !! | TCAATTCAATTTAATGATTG+TGG | + | chr1_3:7707398-7707417 | Msa0101170:intron | 20.0% |
| !! | TTGTTGTACAATTAACAATA+AGG | - | chr1_3:7707454-7707473 | None:intergenic | 20.0% |
| !! | TAATTGTACAACAATCATTT+AGG | + | chr1_3:7707460-7707479 | Msa0101170:intron | 20.0% |
| !!! | AGTTTGTGTTTTTTCTATAA+AGG | + | chr1_3:7707836-7707855 | Msa0101170:intron | 20.0% |
| !! | AAAGAACTTATTGTTTACAT+TGG | - | chr1_3:7708025-7708044 | None:intergenic | 20.0% |
| !!! | TAGGTGGAAATATTTTTAAA+AGG | + | chr1_3:7709461-7709480 | Msa0101170:intron | 20.0% |
| !! | TAAAAGGAATTCAACAATAT+TGG | + | chr1_3:7709477-7709496 | Msa0101170:intron | 20.0% |
| !!! | CTCTTTGTAATACTATTTTT+TGG | + | chr1_3:7709830-7709849 | Msa0101170:intron | 20.0% |
| !!! | CATTTTCTTTAAATTATTGC+TGG | + | chr1_3:7711011-7711030 | Msa0101170:intron | 20.0% |
| !! | AATCATTAACTATAACTAGA+TGG | - | chr1_3:7711165-7711184 | None:intergenic | 20.0% |
| !! | TCTAGTTATAGTTAATGATT+TGG | + | chr1_3:7711165-7711184 | Msa0101170:intron | 20.0% |
| !!! | AAAAAAAAAGATCAAGGTTT+TGG | - | chr1_3:7711510-7711529 | None:intergenic | 20.0% |
| !!! | AAGCTTTTTCACACATTATT+TGG | + | chr1_3:7707026-7707045 | Msa0101170:five_prime_UTR | 25.0% |
| ! | GAAAAGATGAAAAATTTACC+TGG | - | chr1_3:7707250-7707269 | None:intergenic | 25.0% |
| ! | ATTATGTCATAGTATATAGG+AGG | + | chr1_3:7707427-7707446 | Msa0101170:intron | 25.0% |
| ! | GGATACTTCTTAGTAATAAT+TGG | + | chr1_3:7707984-7708003 | Msa0101170:intron | 25.0% |
| ! | TACTTCTTAGTAATAATTGG+AGG | + | chr1_3:7707987-7708006 | Msa0101170:intron | 25.0% |
| ! | TTATATATAATATGCCACTG+CGG | + | chr1_3:7708176-7708195 | Msa0101170:intron | 25.0% |
| ! | ATCAGAATTTCAAATTGCAA+TGG | - | chr1_3:7708387-7708406 | None:intergenic | 25.0% |
| !! | AATTTGAAATTCTGATCAAG+TGG | + | chr1_3:7708391-7708410 | Msa0101170:intron | 25.0% |
| ! | AATCCTTAATGAATGCTATT+GGG | - | chr1_3:7708577-7708596 | None:intergenic | 25.0% |
| ! | TCTATAACTTTCTTAAACAC+CGG | + | chr1_3:7708600-7708619 | Msa0101170:CDS | 25.0% |
| ! | AGAAAAAGAACTTACTACAA+AGG | + | chr1_3:7708787-7708806 | Msa0101170:CDS | 25.0% |
| !!! | TGTATCTTTGTTATTTATGC+TGG | + | chr1_3:7708885-7708904 | Msa0101170:intron | 25.0% |
| ! | ACATCATATAGGAAATGTAA+TGG | + | chr1_3:7708914-7708933 | Msa0101170:intron | 25.0% |
| ! | ATAGAATAACGAAGCTAATT+TGG | - | chr1_3:7709213-7709232 | None:intergenic | 25.0% |
| ! | ATCGATTGACATCTTAAAAT+TGG | - | chr1_3:7709237-7709256 | None:intergenic | 25.0% |
| ! | AACAATATTGGATACTTTCT+TGG | + | chr1_3:7709489-7709508 | Msa0101170:intron | 25.0% |
| ! | ACAATATTGGATACTTTCTT+GGG | + | chr1_3:7709490-7709509 | Msa0101170:intron | 25.0% |
| ! | TATTAGGGATATAGTCATAT+AGG | - | chr1_3:7709613-7709632 | None:intergenic | 25.0% |
| ! | CAAAGGGATCAATTATATTA+GGG | - | chr1_3:7709628-7709647 | None:intergenic | 25.0% |
| ! | ACAAAGGGATCAATTATATT+AGG | - | chr1_3:7709629-7709648 | None:intergenic | 25.0% |
| ! | ATATAATTGATCCCTTTGTA+TGG | + | chr1_3:7709630-7709649 | Msa0101170:intron | 25.0% |
| ! | TGTATTAATATACTCATGTG+AGG | - | chr1_3:7709679-7709698 | None:intergenic | 25.0% |
| !! | ATTATGTTGATAGAGATAGA+GGG | + | chr1_3:7709709-7709728 | Msa0101170:intron | 25.0% |
| !!! | CATAGCTAATGTTTTAGTTA+TGG | + | chr1_3:7709754-7709773 | Msa0101170:intron | 25.0% |
| ! | AGTTATGGTGCAAAATATTA+AGG | + | chr1_3:7709769-7709788 | Msa0101170:intron | 25.0% |
| ! | CATTATTCATCTAGATTATC+TGG | - | chr1_3:7709996-7710015 | None:intergenic | 25.0% |
| !! | GTTCTTCTTAAAAAGTTTTC+TGG | + | chr1_3:7710041-7710060 | Msa0101170:intron | 25.0% |
| ! | AAAAATTCCTATTTACCTCT+TGG | + | chr1_3:7710864-7710883 | Msa0101170:intron | 25.0% |
| ! | ATTAACATGCATAAAGTCAA+AGG | - | chr1_3:7711135-7711154 | None:intergenic | 25.0% |
| !! | ACATATTGATGGAATTGTTT+TGG | + | chr1_3:7711293-7711312 | Msa0101170:intron | 25.0% |
| !!! | TGATGTTTTCTTGATTAGTT+TGG | + | chr1_3:7711397-7711416 | Msa0101170:three_prime_UTR | 25.0% |
| !!! | GATGTTTTCTTGATTAGTTT+GGG | + | chr1_3:7711398-7711417 | Msa0101170:three_prime_UTR | 25.0% |
| !!! | ATGTTTTCTTGATTAGTTTG+GGG | + | chr1_3:7711399-7711418 | Msa0101170:three_prime_UTR | 25.0% |
| !! | TTTTGTCGTTGTAATTTTCA+AGG | + | chr1_3:7711551-7711570 | Msa0101170:intron | 25.0% |
| !! | ACAATGATTGGTTACATTAT+TGG | - | chr1_3:7711684-7711703 | None:intergenic | 25.0% |
| !! | TTGTTGATTTGGGTTTCTAA+TGG | + | chr1_3:7707148-7707167 | Msa0101170:exon | 30.0% |
| !! | TGTTGATTTGGGTTTCTAAT+GGG | + | chr1_3:7707149-7707168 | Msa0101170:exon | 30.0% |
| ! | GGCTAAGAATGATTTAGTTT+AGG | + | chr1_3:7707883-7707902 | Msa0101170:intron | 30.0% |
| !! | ACAATAAGTTCTTTTGAGAG+AGG | + | chr1_3:7708031-7708050 | Msa0101170:intron | 30.0% |
| ! | TCCTCATTGCTTTGATTTAA+AGG | + | chr1_3:7708137-7708156 | Msa0101170:intron | 30.0% |
| TCCTTTAAATCAAAGCAATG+AGG | - | chr1_3:7708141-7708160 | None:intergenic | 30.0% | |
| CAACTTATGCAACATATAAC+TGG | - | chr1_3:7708214-7708233 | None:intergenic | 30.0% | |
| ! | GATCAAGTGGTATCTTTTAT+TGG | + | chr1_3:7708404-7708423 | Msa0101170:intron | 30.0% |
| ATCATTCATGATACAAAGCT+TGG | - | chr1_3:7708457-7708476 | None:intergenic | 30.0% | |
| ! | TCAATTAAAATTTTCTGCGC+AGG | + | chr1_3:7708481-7708500 | Msa0101170:intron | 30.0% |
| CAATCCTTAATGAATGCTAT+TGG | - | chr1_3:7708578-7708597 | None:intergenic | 30.0% | |
| CAATAGCATTCATTAAGGAT+TGG | + | chr1_3:7708576-7708595 | Msa0101170:CDS | 30.0% | |
| !! | TTTTTCCACTTTTAGAAGAC+CGG | - | chr1_3:7708622-7708641 | None:intergenic | 30.0% |
| ! | AATGCAGAAAGACTTTGAAA+TGG | + | chr1_3:7708661-7708680 | Msa0101170:CDS | 30.0% |
| !! | AAAGACTTTGAAATGGAACT+AGG | + | chr1_3:7708668-7708687 | Msa0101170:CDS | 30.0% |
| !! | AAGACTTTGAAATGGAACTA+GGG | + | chr1_3:7708669-7708688 | Msa0101170:CDS | 30.0% |
| TCATTATATTTAGCCACCAA+TGG | - | chr1_3:7708749-7708768 | None:intergenic | 30.0% | |
| ! | TAATGAAACTAGTTTGGCAA+AGG | + | chr1_3:7708763-7708782 | Msa0101170:CDS | 30.0% |
| ! | ACAAAGGAAATTGCTACTTA+TGG | + | chr1_3:7708803-7708822 | Msa0101170:CDS | 30.0% |
| ! | TCTTTTCATTGGTGTGTTAA+TGG | + | chr1_3:7709046-7709065 | Msa0101170:CDS | 30.0% |
| ! | CTTTTCATTGGTGTGTTAAT+GGG | + | chr1_3:7709047-7709066 | Msa0101170:CDS | 30.0% |
| !! | TGTCAATCGATTTTTCTAGT+AGG | + | chr1_3:7709246-7709265 | Msa0101170:intron | 30.0% |
| ! | AAGATGTATCTGAGAAGTAT+AGG | + | chr1_3:7709442-7709461 | Msa0101170:intron | 30.0% |
| TATAGGTATCTGACAAGTAT+CGG | - | chr1_3:7709548-7709567 | None:intergenic | 30.0% | |
| ATTAATATACTCATGTGAGG+AGG | - | chr1_3:7709676-7709695 | None:intergenic | 30.0% | |
| CTCTATCTCTATCAACATAA+TGG | - | chr1_3:7709710-7709729 | None:intergenic | 30.0% | |
| ! | CATTATGTTGATAGAGATAG+AGG | + | chr1_3:7709708-7709727 | Msa0101170:intron | 30.0% |
| TTGATATTTGTGTTCAGCAA+TGG | + | chr1_3:7709863-7709882 | Msa0101170:intron | 30.0% | |
| CAAAAGCTGTTTGGATATAT+TGG | + | chr1_3:7710089-7710108 | Msa0101170:CDS | 30.0% | |
| AAACACAAAAACCAAGTTAG+AGG | - | chr1_3:7710224-7710243 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTTTTGCTCAGTC+TGG | + | chr1_3:7710384-7710403 | Msa0101170:intron | 30.0% |
| AAACTTAGGTTCAATTCCTA+AGG | - | chr1_3:7710420-7710439 | None:intergenic | 30.0% | |
| GCATGTATAATGCTGAATAA+TGG | - | chr1_3:7710706-7710725 | None:intergenic | 30.0% | |
| TATTCAGCATTATACATGCT+TGG | + | chr1_3:7710707-7710726 | Msa0101170:CDS | 30.0% | |
| TTTAACACCAAGAGGTAAAT+AGG | - | chr1_3:7710874-7710893 | None:intergenic | 30.0% | |
| ACAAAACATTTAACACCAAG+AGG | - | chr1_3:7710882-7710901 | None:intergenic | 30.0% | |
| !!! | CTTGGTGTTAAATGTTTTGT+TGG | + | chr1_3:7710882-7710901 | Msa0101170:intron | 30.0% |
| ACATCAAACATGCATTCAAT+AGG | - | chr1_3:7710948-7710967 | None:intergenic | 30.0% | |
| !! | GAATCTTTGAAACAGACATT+GGG | - | chr1_3:7711064-7711083 | None:intergenic | 30.0% |
| !! | TGAATCTTTGAAACAGACAT+TGG | - | chr1_3:7711065-7711084 | None:intergenic | 30.0% |
| TAATCTAGACGAAATTTCCT+AGG | - | chr1_3:7711203-7711222 | None:intergenic | 30.0% | |
| TTAATAGCCAGTTGACAATA+TGG | - | chr1_3:7711228-7711247 | None:intergenic | 30.0% | |
| ! | CGTTTTTGTTGACATATTGA+TGG | + | chr1_3:7711282-7711301 | Msa0101170:intron | 30.0% |
| TGATAGCAAATCTTTCAGAT+TGG | + | chr1_3:7711346-7711365 | Msa0101170:CDS | 30.0% | |
| GATAGCAAATCTTTCAGATT+GGG | + | chr1_3:7711347-7711366 | Msa0101170:CDS | 30.0% | |
| !!! | GGCAACACTTATTCTTTTTT+TGG | + | chr1_3:7711420-7711439 | Msa0101170:three_prime_UTR | 30.0% |
| TACACAGAACAAATACATCA+TGG | - | chr1_3:7711600-7711619 | None:intergenic | 30.0% | |
| GAAAAGGTAGAGAAAATGGT+TGG | - | chr1_3:7706914-7706933 | None:intergenic | 35.0% | |
| AACGGAAAAGGTAGAGAAAA+TGG | - | chr1_3:7706918-7706937 | None:intergenic | 35.0% | |
| TTGAAGGAATCTTGCAACAA+CGG | - | chr1_3:7706936-7706955 | None:intergenic | 35.0% | |
| AAATTGTTGCAAGAGGTTGA+AGG | - | chr1_3:7706952-7706971 | None:intergenic | 35.0% | |
| GATGTTGAAATTGTTGCAAG+AGG | - | chr1_3:7706959-7706978 | None:intergenic | 35.0% | |
| TGTGAAAAAGCTTCAACCTT+TGG | - | chr1_3:7707019-7707038 | None:intergenic | 35.0% | |
| ! | TATTGAACGGTGATTGATTC+TGG | + | chr1_3:7707063-7707082 | Msa0101170:five_prime_UTR | 35.0% |
| ! | ATTGAACGGTGATTGATTCT+GGG | + | chr1_3:7707064-7707083 | Msa0101170:five_prime_UTR | 35.0% |
| !!! | TTTCTGCACTTTTTTCCATC+TGG | + | chr1_3:7707122-7707141 | Msa0101170:five_prime_UTR | 35.0% |
| !!! | TTCTGCACTTTTTTCCATCT+GGG | + | chr1_3:7707123-7707142 | Msa0101170:five_prime_UTR | 35.0% |
| !! | CATCTGGGTATTGTTGATTT+GGG | + | chr1_3:7707138-7707157 | Msa0101170:five_prime_UTR | 35.0% |
| ! | AATGGGTAGTTTGAGATACA+AGG | + | chr1_3:7707166-7707185 | Msa0101170:exon | 35.0% |
| ! | TAGGTACTGTTGTTATCATC+TGG | + | chr1_3:7707204-7707223 | Msa0101170:CDS | 35.0% |
| ! | AGGTACTGTTGTTATCATCT+GGG | + | chr1_3:7707205-7707224 | Msa0101170:CDS | 35.0% |
| ACAACAATCATTTAGGAAGC+TGG | + | chr1_3:7707467-7707486 | Msa0101170:intron | 35.0% | |
| TTGCTTCATGTGACTTGATT+TGG | + | chr1_3:7707524-7707543 | Msa0101170:intron | 35.0% | |
| TAAACTCGGTATCCAGATTA+AGG | + | chr1_3:7707588-7707607 | Msa0101170:intron | 35.0% | |
| ATTAAGGACCGACTAATCTA+GGG | + | chr1_3:7707604-7707623 | Msa0101170:intron | 35.0% | |
| ! | TTTTCTATAAAGGTCGTGTG+AGG | + | chr1_3:7707846-7707865 | Msa0101170:intron | 35.0% |
| TCCAATAAGCCAATCTCATT+GGG | - | chr1_3:7707927-7707946 | None:intergenic | 35.0% | |
| TTCCAATAAGCCAATCTCAT+TGG | - | chr1_3:7707928-7707947 | None:intergenic | 35.0% | |
| TTAGTAATAATTGGAGGTCC+TGG | + | chr1_3:7707993-7708012 | Msa0101170:intron | 35.0% | |
| GTAATCCTGTTCAAGACTAA+CGG | - | chr1_3:7708073-7708092 | None:intergenic | 35.0% | |
| GCAACATATAACTGGAACAA+TGG | - | chr1_3:7708206-7708225 | None:intergenic | 35.0% | |
| TCTAAGTCCTTATCTAAGCA+CGG | + | chr1_3:7708337-7708356 | Msa0101170:intron | 35.0% | |
| TATTAGCACACTGCATGATA+TGG | - | chr1_3:7708433-7708452 | None:intergenic | 35.0% | |
| CACAAATGGCTGCTTATAAT+CGG | - | chr1_3:7708516-7708535 | None:intergenic | 35.0% | |
| AGTGGAAAAAATGCAGAAAG+CGG | + | chr1_3:7708632-7708651 | Msa0101170:CDS | 35.0% | |
| GATATAGACCTTTCAACTCT+TGG | + | chr1_3:7708713-7708732 | Msa0101170:CDS | 35.0% | |
| ! | GATTTTACATTGCACCTATC+TGG | + | chr1_3:7708825-7708844 | Msa0101170:CDS | 35.0% |
| ! | ACCTATCTGGTTTATAACAG+AGG | + | chr1_3:7708838-7708857 | Msa0101170:CDS | 35.0% |
| ACCTCTGTTATAAACCAGAT+AGG | - | chr1_3:7708842-7708861 | None:intergenic | 35.0% | |
| GCTGGTATATGACATCATAT+AGG | + | chr1_3:7708903-7708922 | Msa0101170:intron | 35.0% | |
| ACAGTATTGTCATCTACTTC+AGG | + | chr1_3:7709014-7709033 | Msa0101170:CDS | 35.0% | |
| ATCAAAAGTAGTTGCTGTCT+TGG | + | chr1_3:7709088-7709107 | Msa0101170:CDS | 35.0% | |
| ATTAAATTGCGAGTCATCTG+CGG | - | chr1_3:7709159-7709178 | None:intergenic | 35.0% | |
| GGTCATCAAAGAGATAGAAA+GGG | - | chr1_3:7709192-7709211 | None:intergenic | 35.0% | |
| TGGTCATCAAAGAGATAGAA+AGG | - | chr1_3:7709193-7709212 | None:intergenic | 35.0% | |
| ! | ATGTATCTGAGAAGTATAGG+TGG | + | chr1_3:7709445-7709464 | Msa0101170:intron | 35.0% |
| TCAATGTGATGCCATACAAA+GGG | - | chr1_3:7709644-7709663 | None:intergenic | 35.0% | |
| TTCAATGTGATGCCATACAA+AGG | - | chr1_3:7709645-7709664 | None:intergenic | 35.0% | |
| ! | AGATAGAGGGTATAAGAGAA+AGG | + | chr1_3:7709722-7709741 | Msa0101170:intron | 35.0% |
| ! | TCTCTTGTTGGAGATCTTTT+TGG | + | chr1_3:7709893-7709912 | Msa0101170:CDS | 35.0% |
| AGTAAATAGACCATAGGACA+TGG | - | chr1_3:7709930-7709949 | None:intergenic | 35.0% | |
| ATGTCCTATGGTCTATTTAC+TGG | + | chr1_3:7709929-7709948 | Msa0101170:CDS | 35.0% | |
| CTAACCAGTAAATAGACCAT+AGG | - | chr1_3:7709936-7709955 | None:intergenic | 35.0% | |
| !! | AAAAAGTTTTCTGGCGAAGA+AGG | + | chr1_3:7710050-7710069 | Msa0101170:CDS | 35.0% |
| GTGATCATATAAGTCGAGTT+TGG | - | chr1_3:7710184-7710203 | None:intergenic | 35.0% | |
| AGTTAGAGGAGCAAATGAAA+AGG | - | chr1_3:7710210-7710229 | None:intergenic | 35.0% | |
| TTTCATTTGCTCCTCTAACT+TGG | + | chr1_3:7710210-7710229 | Msa0101170:intron | 35.0% | |
| AGTTTGTAACAGTAGCCAAT+CGG | + | chr1_3:7710789-7710808 | Msa0101170:intron | 35.0% | |
| ATAAGTCATCCTATCATCGA+TGG | - | chr1_3:7710910-7710929 | None:intergenic | 35.0% | |
| TTGAATGCATGTTTGATGTC+TGG | + | chr1_3:7710949-7710968 | Msa0101170:intron | 35.0% | |
| GATTAGACCATATTGTCAAC+TGG | + | chr1_3:7711218-7711237 | Msa0101170:intron | 35.0% | |
| !!! | TGTTTTGGCATTGTGTTAAC+AGG | + | chr1_3:7711308-7711327 | Msa0101170:intron | 35.0% |
| TTGTGTTAACAGGTATTTGC+TGG | + | chr1_3:7711318-7711337 | Msa0101170:intron | 35.0% | |
| TGTGTTAACAGGTATTTGCT+GGG | + | chr1_3:7711319-7711338 | Msa0101170:intron | 35.0% | |
| TATGCTATGACACTCAATCT+GGG | - | chr1_3:7711464-7711483 | None:intergenic | 35.0% | |
| ATATGCTATGACACTCAATC+TGG | - | chr1_3:7711465-7711484 | None:intergenic | 35.0% | |
| ! | TATTGGCTAACATCTCATCT+TGG | - | chr1_3:7711667-7711686 | None:intergenic | 35.0% |
| GAATCTTGCAACAACGGAAA+AGG | - | chr1_3:7706930-7706949 | None:intergenic | 40.0% | |
| CAAGCTTCAATTTCCACCAA+AGG | + | chr1_3:7707000-7707019 | Msa0101170:five_prime_UTR | 40.0% | |
| GAAAAAGCTTCAACCTTTGG+TGG | - | chr1_3:7707016-7707035 | None:intergenic | 40.0% | |
| CCAAATCAACAATACCCAGA+TGG | - | chr1_3:7707140-7707159 | None:intergenic | 40.0% | |
| ! | CCATCTGGGTATTGTTGATT+TGG | + | chr1_3:7707137-7707156 | Msa0101170:five_prime_UTR | 40.0% |
| ! | GTAGTTTGAGATACAAGGCT+GGG | + | chr1_3:7707171-7707190 | Msa0101170:CDS | 40.0% |
| !! | AAGGCTGGGTTGTTTCTTAT+AGG | + | chr1_3:7707185-7707204 | Msa0101170:CDS | 40.0% |
| AAGCTGGTGTATTTGAGAGA+GGG | + | chr1_3:7707483-7707502 | Msa0101170:intron | 40.0% | |
| TGTATTTGAGAGAGGGATGT+AGG | + | chr1_3:7707490-7707509 | Msa0101170:intron | 40.0% | |
| ! | AGATTAGTCGGTCCTTAATC+TGG | - | chr1_3:7707603-7707622 | None:intergenic | 40.0% |
| GATTAAGGACCGACTAATCT+AGG | + | chr1_3:7707603-7707622 | Msa0101170:intron | 40.0% | |
| TTAAGGACCGACTAATCTAG+GGG | + | chr1_3:7707605-7707624 | Msa0101170:intron | 40.0% | |
| GATTTGTCCCCTAGATTAGT+CGG | - | chr1_3:7707615-7707634 | None:intergenic | 40.0% | |
| AAATCCCACTGTCTACTAGT+GGG | + | chr1_3:7707630-7707649 | Msa0101170:intron | 40.0% | |
| AATTTATGTGTTGGGCGAGA+CGG | - | chr1_3:7707695-7707714 | None:intergenic | 40.0% | |
| TCGCCCAACACATAAATTGT+TGG | + | chr1_3:7707697-7707716 | Msa0101170:intron | 40.0% | |
| GCGCCAACAATTTATGTGTT+GGG | - | chr1_3:7707703-7707722 | None:intergenic | 40.0% | |
| AGCGCCAACAATTTATGTGT+TGG | - | chr1_3:7707704-7707723 | None:intergenic | 40.0% | |
| ACACATAAATTGTTGGCGCT+TGG | + | chr1_3:7707704-7707723 | Msa0101170:intron | 40.0% | |
| CACATAAATTGTTGGCGCTT+GGG | + | chr1_3:7707705-7707724 | Msa0101170:intron | 40.0% | |
| ACATAAATTGTTGGCGCTTG+GGG | + | chr1_3:7707706-7707725 | Msa0101170:intron | 40.0% | |
| ATGCATAAGATTGAAACCCC+CGG | - | chr1_3:7707804-7707823 | None:intergenic | 40.0% | |
| ACCTAATGACCCAATGAGAT+TGG | + | chr1_3:7707915-7707934 | Msa0101170:intron | 40.0% | |
| !! | ACCCAATGAGATTGGCTTAT+TGG | + | chr1_3:7707923-7707942 | Msa0101170:intron | 40.0% |
| AAGTGGAGAGGATGTGTATA+AGG | + | chr1_3:7707963-7707982 | Msa0101170:intron | 40.0% | |
| TGTTTACATTGGATCGAACC+AGG | - | chr1_3:7708014-7708033 | None:intergenic | 40.0% | |
| TCAAGACTAACGGAGCAAAA+GGG | - | chr1_3:7708063-7708082 | None:intergenic | 40.0% | |
| TTCAAGACTAACGGAGCAAA+AGG | - | chr1_3:7708064-7708083 | None:intergenic | 40.0% | |
| GTCTTGAACAGGATTACCTT+TGG | + | chr1_3:7708076-7708095 | Msa0101170:intron | 40.0% | |
| TGAACAGGATTACCTTTGGT+AGG | + | chr1_3:7708080-7708099 | Msa0101170:intron | 40.0% | |
| CACAGATATCATCCTACCAA+AGG | - | chr1_3:7708095-7708114 | None:intergenic | 40.0% | |
| CTTTGGTAGGATGATATCTG+TGG | + | chr1_3:7708093-7708112 | Msa0101170:intron | 40.0% | |
| ! | CAATGAGGACTGCATTTTTG+GGG | - | chr1_3:7708126-7708145 | None:intergenic | 40.0% |
| ! | GCAATGAGGACTGCATTTTT+GGG | - | chr1_3:7708127-7708146 | None:intergenic | 40.0% |
| ! | AGCAATGAGGACTGCATTTT+TGG | - | chr1_3:7708128-7708147 | None:intergenic | 40.0% |
| GTCTTACATATGTAGACCAG+AGG | + | chr1_3:7708240-7708259 | Msa0101170:intron | 40.0% | |
| ACACTGTTGTCTAAGCTTGA+AGG | + | chr1_3:7708263-7708282 | Msa0101170:intron | 40.0% | |
| CGATTATAAGCAGCCATTTG+TGG | + | chr1_3:7708514-7708533 | Msa0101170:CDS | 40.0% | |
| CCATTTGTGGTGACATATCT+CGG | + | chr1_3:7708527-7708546 | Msa0101170:CDS | 40.0% | |
| CCTTAATGAATGCTATTGGG+AGG | - | chr1_3:7708574-7708593 | None:intergenic | 40.0% | |
| CCTCCCAATAGCATTCATTA+AGG | + | chr1_3:7708571-7708590 | Msa0101170:CDS | 40.0% | |
| ! | AAACACCGGTCTTCTAAAAG+TGG | + | chr1_3:7708614-7708633 | Msa0101170:CDS | 40.0% |
| AAAAATGCAGAAAGCGGCAA+TGG | + | chr1_3:7708638-7708657 | Msa0101170:CDS | 40.0% | |
| TGAAATGGAACTAGGGAATG+TGG | + | chr1_3:7708676-7708695 | Msa0101170:CDS | 40.0% | |
| CTATCTCTCCAAGAGTTGAA+AGG | - | chr1_3:7708724-7708743 | None:intergenic | 40.0% | |
| ! | GGACTCTTCACTCTTTTCAT+TGG | + | chr1_3:7709035-7709054 | Msa0101170:CDS | 40.0% |
| TGTTTGTAAACCAGCTCAGA+GGG | - | chr1_3:7709295-7709314 | None:intergenic | 40.0% | |
| ATGTTTGTAAACCAGCTCAG+AGG | - | chr1_3:7709296-7709315 | None:intergenic | 40.0% | |
| ! | GTGAAGTACTAGACACGATT+TGG | + | chr1_3:7709519-7709538 | Msa0101170:intron | 40.0% |
| TGTTTACACTTGTAGCGCTA+TGG | + | chr1_3:7710114-7710133 | Msa0101170:CDS | 40.0% | |
| AAGAACCACTTCATCCATTC+TGG | - | chr1_3:7710459-7710478 | None:intergenic | 40.0% | |
| GATGAAGTGGTTCTTGCAAA+TGG | + | chr1_3:7710464-7710483 | Msa0101170:CDS | 40.0% | |
| ! | GTTCTTGCAAATGGACTTGT+TGG | + | chr1_3:7710473-7710492 | Msa0101170:CDS | 40.0% |
| GTGTTCTCTCAGACTATTTC+TGG | + | chr1_3:7710498-7710517 | Msa0101170:CDS | 40.0% | |
| TTTACTTGATCTACCACCCA+GGG | + | chr1_3:7710583-7710602 | Msa0101170:intron | 40.0% | |
| ! | CACTATTCCTCTTGCTATGA+TGG | + | chr1_3:7710658-7710677 | Msa0101170:CDS | 40.0% |
| TGAAAGAAAGATCCTCCGAT+TGG | - | chr1_3:7710807-7710826 | None:intergenic | 40.0% | |
| !! | TTGTTGGTTCCATCGATGAT+AGG | + | chr1_3:7710898-7710917 | Msa0101170:intron | 40.0% |
| ! | ATGCATTCAATAGGAAGTGC+TGG | - | chr1_3:7710939-7710958 | None:intergenic | 40.0% |
| TTTGGTAAGTGTCATAGCCT+AGG | + | chr1_3:7711183-7711202 | Msa0101170:intron | 40.0% | |
| ! | GGTAGTTTGAGATACAAGGC+TGG | + | chr1_3:7707170-7707189 | Msa0101170:CDS | 45.0% |
| GAAGCTGGTGTATTTGAGAG+AGG | + | chr1_3:7707482-7707501 | Msa0101170:intron | 45.0% | |
| !! | GAGAGGGATGTAGGTTGATA+TGG | + | chr1_3:7707499-7707518 | Msa0101170:intron | 45.0% |
| CAAATCCCACTGTCTACTAG+TGG | + | chr1_3:7707629-7707648 | Msa0101170:intron | 45.0% | |
| AATCCCACTGTCTACTAGTG+GGG | + | chr1_3:7707631-7707650 | Msa0101170:intron | 45.0% | |
| TGGGGACCTAGTCAAAGTTA+GGG | + | chr1_3:7707649-7707668 | Msa0101170:intron | 45.0% | |
| GCTTTGCCCTAACTTTGACT+AGG | - | chr1_3:7707658-7707677 | None:intergenic | 45.0% | |
| AGTTAGGGCAAAGCTCTGTA+TGG | + | chr1_3:7707664-7707683 | Msa0101170:intron | 45.0% | |
| CATAAATTGTTGGCGCTTGG+GGG | + | chr1_3:7707707-7707726 | Msa0101170:intron | 45.0% | |
| TTTGAACCTGAGACCTAGAG+AGG | + | chr1_3:7707731-7707750 | Msa0101170:intron | 45.0% | |
| TGCATAAGATTGAAACCCCC+GGG | - | chr1_3:7707803-7707822 | None:intergenic | 45.0% | |
| GCCAATCTCATTGGGTCATT+AGG | - | chr1_3:7707919-7707938 | None:intergenic | 45.0% | |
| ! | TGGCTTATTGGAAGCATGCT+TGG | + | chr1_3:7707935-7707954 | Msa0101170:intron | 45.0% |
| ATACACATCCTCTCCACTTG+TGG | - | chr1_3:7707962-7707981 | None:intergenic | 45.0% | |
| CAAGACTAACGGAGCAAAAG+GGG | - | chr1_3:7708062-7708081 | None:intergenic | 45.0% | |
| !! | TTGCTCCGTTAGTCTTGAAC+AGG | + | chr1_3:7708065-7708084 | Msa0101170:intron | 45.0% |
| AGTCCTTATCTAAGCACGGT+TGG | + | chr1_3:7708341-7708360 | Msa0101170:intron | 45.0% | |
| TCTCCAACCGTGCTTAGATA+AGG | - | chr1_3:7708347-7708366 | None:intergenic | 45.0% | |
| CCGAGATATGTCACCACAAA+TGG | - | chr1_3:7708530-7708549 | None:intergenic | 45.0% | |
| ATATCTCGGAGCTTCTCTCA+TGG | + | chr1_3:7708541-7708560 | Msa0101170:CDS | 45.0% | |
| TCTTGGAGAGATAGCACCAT+TGG | + | chr1_3:7708730-7708749 | Msa0101170:CDS | 45.0% | |
| TAAACCAGCTCAGAGGGTAA+AGG | - | chr1_3:7709289-7709308 | None:intergenic | 45.0% | |
| CATAGGACATGGCTGAAAGA+AGG | - | chr1_3:7709919-7709938 | None:intergenic | 45.0% | |
| CTTCTTTCAGCCATGTCCTA+TGG | + | chr1_3:7709917-7709936 | Msa0101170:CDS | 45.0% | |
| ! | TTTCTGGCGAAGAAGGTGAA+CGG | + | chr1_3:7710057-7710076 | Msa0101170:CDS | 45.0% |
| GTTGACGTGCAAAAGCTGTT+TGG | + | chr1_3:7710080-7710099 | Msa0101170:CDS | 45.0% | |
| TTACACTTGTAGCGCTATGG+TGG | + | chr1_3:7710117-7710136 | Msa0101170:CDS | 45.0% | |
| GCATTAACCAGTGCCAACTT+CGG | + | chr1_3:7710303-7710322 | Msa0101170:intron | 45.0% | |
| TCAATTCCTAAGGCCGACAA+TGG | - | chr1_3:7710410-7710429 | None:intergenic | 45.0% | |
| GTTTACTTGATCTACCACCC+AGG | + | chr1_3:7710582-7710601 | Msa0101170:intron | 45.0% | |
| ATGTCAGCCATCATAGCAAG+AGG | - | chr1_3:7710668-7710687 | None:intergenic | 45.0% | |
| ! | TCTTGCTATGATGGCTGACA+TGG | + | chr1_3:7710667-7710686 | Msa0101170:CDS | 45.0% |
| ATGGCTGACATGGTAATCCA+TGG | + | chr1_3:7710677-7710696 | Msa0101170:CDS | 45.0% | |
| ATGCTGAATAATGGCGACCA+TGG | - | chr1_3:7710697-7710716 | None:intergenic | 45.0% | |
| ATACATGCTTGGATCAGCTC+AGG | + | chr1_3:7710718-7710737 | Msa0101170:CDS | 45.0% | |
| TTGTAACAGTAGCCAATCGG+AGG | + | chr1_3:7710792-7710811 | Msa0101170:intron | 45.0% | |
| AGATTGGGCGACAAAGAGAT+TGG | + | chr1_3:7711362-7711381 | Msa0101170:CDS | 45.0% | |
| GATTGGGCGACAAAGAGATT+GGG | + | chr1_3:7711363-7711382 | Msa0101170:CDS | 45.0% | |
| ATGACACTCAATCTGGGTAG+TGG | - | chr1_3:7711458-7711477 | None:intergenic | 45.0% | |
| !!! | AATTAAATAATTTTACATTA+TGG | - | chr1_3:7707277-7707296 | None:intergenic | 5.0% |
| !! | CGGTGATTGATTCTGGGATC+TGG | + | chr1_3:7707070-7707089 | Msa0101170:five_prime_UTR | 50.0% |
| GTGGGGACCTAGTCAAAGTT+AGG | + | chr1_3:7707648-7707667 | Msa0101170:intron | 50.0% | |
| CATAAGATTGAAACCCCCGG+GGG | - | chr1_3:7707801-7707820 | None:intergenic | 50.0% | |
| GCATAAGATTGAAACCCCCG+GGG | - | chr1_3:7707802-7707821 | None:intergenic | 50.0% | |
| TGTGAGGTCGAAAGCTCTGT+TGG | + | chr1_3:7707862-7707881 | Msa0101170:intron | 50.0% | |
| AAGCATGCTTGGTCCACAAG+TGG | + | chr1_3:7707946-7707965 | Msa0101170:intron | 50.0% | |
| GCTTAGACAACAGTGTCCTC+TGG | - | chr1_3:7708259-7708278 | None:intergenic | 50.0% | |
| TGGAGAGATAGCACCATTGG+TGG | + | chr1_3:7708733-7708752 | Msa0101170:CDS | 50.0% | |
| AGTCTTGCCCAGAGTTGTCA+TGG | - | chr1_3:7709132-7709151 | None:intergenic | 50.0% | |
| TGACAACTCTGGGCAAGACT+TGG | + | chr1_3:7709132-7709151 | Msa0101170:CDS | 50.0% | |
| GACAACTCTGGGCAAGACTT+GGG | + | chr1_3:7709133-7709152 | Msa0101170:CDS | 50.0% | |
| AATGGACAGCGCTCTCTTGT+TGG | + | chr1_3:7709881-7709900 | Msa0101170:CDS | 50.0% | |
| TTCTGGCGAAGAAGGTGAAC+GGG | + | chr1_3:7710058-7710077 | Msa0101170:CDS | 50.0% | |
| TTAACCAGTGCCAACTTCGG+TGG | + | chr1_3:7710306-7710325 | Msa0101170:intron | 50.0% | |
| TAACCAGTGCCAACTTCGGT+GGG | + | chr1_3:7710307-7710326 | Msa0101170:intron | 50.0% | |
| TTGCTCAGTCTGGCCATTGT+CGG | + | chr1_3:7710394-7710413 | Msa0101170:intron | 50.0% | |
| GAGTGCGGAATCGCAAACTT+AGG | - | chr1_3:7710434-7710453 | None:intergenic | 50.0% | |
| TCATCCATTCTGGCAGAGTG+CGG | - | chr1_3:7710449-7710468 | None:intergenic | 50.0% | |
| CTCTGCCAGAATGGATGAAG+TGG | + | chr1_3:7710451-7710470 | Msa0101170:CDS | 50.0% | |
| AGTGAGTGACATGCCCAAAG+TGG | - | chr1_3:7710642-7710661 | None:intergenic | 50.0% | |
| TGCTTGGATCAGCTCAGGTA+TGG | + | chr1_3:7710723-7710742 | Msa0101170:intron | 50.0% | |
| GAATGCGAAACCACATGCGT+TGG | - | chr1_3:7710982-7711001 | None:intergenic | 50.0% | |
| CTGGCAGAAGCAGAAACGTG+TGG | + | chr1_3:7707089-7707108 | Msa0101170:five_prime_UTR | 55.0% | |
| TACCTGGGTGACTTCAGCAG+AGG | - | chr1_3:7707234-7707253 | None:intergenic | 55.0% | |
| GGTCCCCACTAGTAGACAGT+GGG | - | chr1_3:7707637-7707656 | None:intergenic | 55.0% | |
| AGGTCCCCACTAGTAGACAG+TGG | - | chr1_3:7707638-7707657 | None:intergenic | 55.0% | |
| TGTGCTCCTCTCTAGGTCTC+AGG | - | chr1_3:7707740-7707759 | None:intergenic | 55.0% | |
| ! | CTAGGAGTGTGCTCCTCTCT+AGG | - | chr1_3:7707747-7707766 | None:intergenic | 55.0% |
| ! | CTAGAGAGGAGCACACTCCT+AGG | + | chr1_3:7707745-7707764 | Msa0101170:intron | 55.0% |
| GTGGTGAAGACTTGGGACCT+AGG | - | chr1_3:7707765-7707784 | None:intergenic | 55.0% | |
| TGGCCTCGTGGTGAAGACTT+GGG | - | chr1_3:7707772-7707791 | None:intergenic | 55.0% | |
| TTGGCCTCGTGGTGAAGACT+TGG | - | chr1_3:7707773-7707792 | None:intergenic | 55.0% | |
| TGCTTGGTCCACAAGTGGAG+AGG | + | chr1_3:7707951-7707970 | Msa0101170:intron | 55.0% | |
| GCTGTCTTGGTCAGCATGAC+CGG | + | chr1_3:7709101-7709120 | Msa0101170:CDS | 55.0% | |
| CTGTCTTGGTCAGCATGACC+GGG | + | chr1_3:7709102-7709121 | Msa0101170:CDS | 55.0% | |
| TGTCTTGGTCAGCATGACCG+GGG | + | chr1_3:7709103-7709122 | Msa0101170:CDS | 55.0% | |
| CAGAGTTGTCATGGCAACCC+CGG | - | chr1_3:7709123-7709142 | None:intergenic | 55.0% | |
| GGGGTTGCCATGACAACTCT+GGG | + | chr1_3:7709122-7709141 | Msa0101170:CDS | 55.0% | |
| GCATCCTTTACCCTCTGAGC+TGG | + | chr1_3:7709282-7709301 | Msa0101170:intron | 55.0% | |
| CCAAACTAGCCCACCGAAGT+TGG | - | chr1_3:7710319-7710338 | None:intergenic | 55.0% | |
| !! | CCAACTTCGGTGGGCTAGTT+TGG | + | chr1_3:7710316-7710335 | Msa0101170:intron | 55.0% |
| GATTCCGCACTCTGCCAGAA+TGG | + | chr1_3:7710442-7710461 | Msa0101170:CDS | 55.0% | |
| CGTATGGACAACTCCCCTTG+TGG | + | chr1_3:7710616-7710635 | Msa0101170:CDS | 55.0% | |
| AACTCCCCTTGTGGCCACTT+TGG | + | chr1_3:7710625-7710644 | Msa0101170:CDS | 55.0% | |
| ! | ACTCCCCTTGTGGCCACTTT+GGG | + | chr1_3:7710626-7710645 | Msa0101170:CDS | 55.0% |
| ATGCCCAAAGTGGCCACAAG+GGG | - | chr1_3:7710632-7710651 | None:intergenic | 55.0% | |
| CATGCCCAAAGTGGCCACAA+GGG | - | chr1_3:7710633-7710652 | None:intergenic | 55.0% | |
| ACATGCCCAAAGTGGCCACA+AGG | - | chr1_3:7710634-7710653 | None:intergenic | 55.0% | |
| TGGCACAACACCAACGCATG+TGG | + | chr1_3:7710969-7710988 | Msa0101170:intron | 55.0% | |
| CTCCTCTGCTGAAGTCACCC+AGG | + | chr1_3:7707229-7707248 | Msa0101170:CDS | 60.0% | |
| GGTCCCAAGTCTTCACCACG+AGG | + | chr1_3:7707766-7707785 | Msa0101170:intron | 60.0% | |
| GATTGAAACCCCCGGGGGTT+GGG | - | chr1_3:7707796-7707815 | None:intergenic | 60.0% | |
| AGATTGAAACCCCCGGGGGT+TGG | - | chr1_3:7707797-7707816 | None:intergenic | 60.0% | |
| !! | GGAACAATGGAGCACCGCAG+TGG | - | chr1_3:7708193-7708212 | None:intergenic | 60.0% |
| CGGGGTTGCCATGACAACTC+TGG | + | chr1_3:7709121-7709140 | Msa0101170:CDS | 60.0% | |
| TAGCCCACCGAAGTTGGCAC+TGG | - | chr1_3:7710313-7710332 | None:intergenic | 60.0% | |
| GTCTGGCCATTGTCGGCCTT+AGG | + | chr1_3:7710401-7710420 | Msa0101170:intron | 60.0% | |
| ! | CATACGACGCAGAGTGCCCT+GGG | - | chr1_3:7710602-7710621 | None:intergenic | 60.0% |
| ! | CCATACGACGCAGAGTGCCC+TGG | - | chr1_3:7710603-7710622 | None:intergenic | 65.0% |
| ! | CCAGGGCACTCTGCGTCGTA+TGG | + | chr1_3:7710600-7710619 | Msa0101170:intron | 65.0% |
| CACGAGGCCAACCCAACCCC+CGG | + | chr1_3:7707782-7707801 | Msa0101170:intron | 70.0% | |
| ACGAGGCCAACCCAACCCCC+GGG | + | chr1_3:7707783-7707802 | Msa0101170:intron | 70.0% | |
| GAAACCCCCGGGGGTTGGGT+TGG | - | chr1_3:7707792-7707811 | None:intergenic | 70.0% | |
| ! | ACGACGCAGAGTGCCCTGGG+TGG | - | chr1_3:7710599-7710618 | None:intergenic | 70.0% |
| !! | CGGGGGTTGGGTTGGCCTCG+TGG | - | chr1_3:7707784-7707803 | None:intergenic | 75.0% |
| CGAGGCCAACCCAACCCCCG+GGG | + | chr1_3:7707784-7707803 | Msa0101170:intron | 75.0% | |
| GAGGCCAACCCAACCCCCGG+GGG | + | chr1_3:7707785-7707804 | Msa0101170:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7706897 | 7711710 | 7706897 | ID=Msa0101170;Name=Msa0101170 |
| chr1_3 | mRNA | 7706897 | 7711710 | 7706897 | ID=Msa0101170-mRNA-1;Parent=Msa0101170;Name=Msa0101170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=270|1|1|1|0.87|0.77|9|298|381 |
| chr1_3 | exon | 7706897 | 7707250 | 7706897 | ID=Msa0101170-mRNA-1:exon:3034;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7708503 | 7708859 | 7708503 | ID=Msa0101170-mRNA-1:exon:3035;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7708969 | 7709183 | 7708969 | ID=Msa0101170-mRNA-1:exon:3036;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7709880 | 7709950 | 7709880 | ID=Msa0101170-mRNA-1:exon:3037;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7710042 | 7710143 | 7710042 | ID=Msa0101170-mRNA-1:exon:3038;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7710402 | 7710519 | 7710402 | ID=Msa0101170-mRNA-1:exon:3039;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7710604 | 7710739 | 7710604 | ID=Msa0101170-mRNA-1:exon:3040;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7711330 | 7711534 | 7711330 | ID=Msa0101170-mRNA-1:exon:3041;Parent=Msa0101170-mRNA-1 |
| chr1_3 | exon | 7711555 | 7711710 | 7711555 | ID=Msa0101170-mRNA-1:exon:3042;Parent=Msa0101170-mRNA-1 |
| chr1_3 | five_prime_UTR | 7706897 | 7707166 | 7706897 | ID=Msa0101170-mRNA-1:five_prime_utr;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7707167 | 7707250 | 7707167 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7708503 | 7708859 | 7708503 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7708969 | 7709183 | 7708969 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7709880 | 7709950 | 7709880 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7710042 | 7710143 | 7710042 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7710402 | 7710519 | 7710402 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7710604 | 7710739 | 7710604 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | CDS | 7711330 | 7711392 | 7711330 | ID=Msa0101170-mRNA-1:cds;Parent=Msa0101170-mRNA-1 |
| chr1_3 | three_prime_UTR | 7711393 | 7711534 | 7711393 | ID=Msa0101170-mRNA-1:three_prime_utr;Parent=Msa0101170-mRNA-1 |
| chr1_3 | three_prime_UTR | 7711555 | 7711710 | 7711555 | ID=Msa0101170-mRNA-1:three_prime_utr;Parent=Msa0101170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
