Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065890 | XP_013469679.1 | 93.427 | 213 | 9 | 2 | 1 | 212 | 1 | 209 | 1.43e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065890 | sp|P93788|REMO_SOLTU | 68.557 | 194 | 45 | 5 | 29 | 212 | 11 | 198 | 1.50e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065890 | G8A207 | 93.427 | 213 | 9 | 2 | 1 | 212 | 1 | 209 | 6.83e-115 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039330 | Msa0065890 | 0.972651 | 4.088330e-135 | -8.615850e-47 |
| Msa0065890 | Msa0133760 | 0.934105 | 6.751346e-96 | -8.615850e-47 |
| Msa0065890 | Msa0389320 | 0.801493 | 8.773002e-49 | -8.615850e-47 |
| Msa0065890 | Msa0475490 | 0.806789 | 6.934869e-50 | -8.615850e-47 |
| Msa0065890 | Msa0553460 | 0.819770 | 9.756963e-53 | -8.615850e-47 |
| Msa0065890 | Msa0564510 | 0.816274 | 6.018131e-52 | -8.615850e-47 |
| Msa0065890 | Msa0585000 | -0.802585 | 5.231596e-49 | -8.615850e-47 |
| Msa0065890 | Msa0607540 | 0.814196 | 1.742314e-51 | -8.615850e-47 |
| Msa0065890 | Msa0647830 | 0.832659 | 8.334445e-56 | -8.615850e-47 |
| Msa0065890 | Msa0678820 | 0.809031 | 2.313057e-50 | -8.615850e-47 |
| Msa0065890 | Msa0690440 | 0.834278 | 3.287390e-56 | -8.615850e-47 |
| Msa0065890 | Msa0807030 | 0.859207 | 4.850690e-63 | -8.615850e-47 |
| Msa0065890 | Msa0832970 | 0.834562 | 2.789134e-56 | -8.615850e-47 |
| Msa0065890 | Msa0901500 | 0.804766 | 1.844859e-49 | -8.615850e-47 |
| Msa0065890 | Msa1075220 | -0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa0065890 | Msa1090260 | 0.815667 | 8.218887e-52 | -8.615850e-47 |
| Msa0065890 | Msa1116130 | -0.804846 | 1.775687e-49 | -8.615850e-47 |
| Msa0065890 | Msa1139000 | -0.820605 | 6.277979e-53 | -8.615850e-47 |
| Msa0065890 | Msa1162550 | -0.812808 | 3.518409e-51 | -8.615850e-47 |
| Msa0065890 | Msa1205130 | 0.814075 | 1.852565e-51 | -8.615850e-47 |
| Msa0065890 | Msa1246500 | 0.805593 | 1.238488e-49 | -8.615850e-47 |
| Msa0065890 | Msa1249490 | 0.805021 | 1.632412e-49 | -8.615850e-47 |
| Msa0065890 | Msa1451620 | -0.801105 | 1.053248e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065890 | MtrunA17_Chr1g0203401 | 93.427 | 213 | 9 | 2 | 1 | 212 | 1 | 209 | 1.31e-118 | 335 |
| Msa0065890 | MtrunA17_Chr8g0349271 | 60.335 | 179 | 62 | 2 | 34 | 212 | 31 | 200 | 6.26e-66 | 201 |
| Msa0065890 | MtrunA17_Chr8g0386521 | 58.400 | 125 | 52 | 0 | 88 | 212 | 74 | 198 | 1.03e-47 | 155 |
| Msa0065890 | MtrunA17_Chr5g0397781 | 61.475 | 122 | 47 | 0 | 91 | 212 | 86 | 207 | 1.32e-46 | 152 |
| Msa0065890 | MtrunA17_Chr7g0247121 | 69.231 | 65 | 20 | 0 | 148 | 212 | 34 | 98 | 4.74e-26 | 96.7 |
| Msa0065890 | MtrunA17_Chr1g0173571 | 33.607 | 122 | 81 | 0 | 86 | 207 | 148 | 269 | 1.54e-14 | 70.5 |
| Msa0065890 | MtrunA17_Chr1g0153281 | 35.577 | 104 | 66 | 1 | 109 | 212 | 513 | 615 | 1.95e-12 | 65.5 |
| Msa0065890 | MtrunA17_Chr8g0376741 | 38.532 | 109 | 64 | 1 | 97 | 205 | 412 | 517 | 3.98e-12 | 64.7 |
| Msa0065890 | MtrunA17_Chr7g0257771 | 34.959 | 123 | 79 | 1 | 85 | 207 | 154 | 275 | 4.27e-12 | 63.9 |
| Msa0065890 | MtrunA17_Chr8g0377061 | 34.615 | 104 | 68 | 0 | 109 | 212 | 251 | 354 | 5.65e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065890 | AT5G23750.2 | 70.667 | 150 | 38 | 2 | 64 | 212 | 57 | 201 | 7.91e-66 | 202 |
| Msa0065890 | AT3G61260.1 | 62.791 | 172 | 57 | 3 | 42 | 212 | 47 | 212 | 1.85e-65 | 201 |
| Msa0065890 | AT3G48940.1 | 61.628 | 172 | 59 | 3 | 46 | 212 | 6 | 175 | 1.08e-64 | 198 |
| Msa0065890 | AT5G23750.3 | 77.778 | 126 | 28 | 0 | 87 | 212 | 104 | 229 | 1.38e-64 | 199 |
| Msa0065890 | AT5G23750.1 | 77.778 | 126 | 28 | 0 | 87 | 212 | 77 | 202 | 1.39e-64 | 199 |
| Msa0065890 | AT2G45820.1 | 61.176 | 170 | 57 | 2 | 43 | 212 | 30 | 190 | 1.87e-54 | 172 |
| Msa0065890 | AT1G63295.1 | 44.628 | 121 | 64 | 1 | 95 | 212 | 31 | 151 | 4.83e-22 | 88.2 |
| Msa0065890 | AT1G63295.2 | 46.364 | 110 | 59 | 0 | 95 | 204 | 71 | 180 | 7.42e-22 | 89.0 |
| Msa0065890 | AT4G00670.1 | 42.157 | 102 | 59 | 0 | 106 | 207 | 16 | 117 | 2.59e-20 | 83.2 |
| Msa0065890 | AT2G41870.1 | 33.884 | 121 | 79 | 1 | 93 | 212 | 153 | 273 | 4.50e-13 | 67.0 |
| Msa0065890 | AT3G57540.1 | 33.058 | 121 | 79 | 1 | 93 | 211 | 175 | 295 | 1.17e-12 | 65.9 |
| Msa0065890 | AT1G30320.1 | 39.167 | 120 | 66 | 2 | 97 | 212 | 392 | 508 | 3.61e-12 | 65.1 |
| Msa0065890 | AT1G67590.1 | 29.412 | 187 | 126 | 2 | 30 | 212 | 154 | 338 | 3.96e-12 | 64.7 |
| Msa0065890 | AT2G02170.3 | 42.308 | 104 | 60 | 0 | 109 | 212 | 254 | 357 | 6.21e-11 | 61.2 |
| Msa0065890 | AT2G02170.6 | 42.308 | 104 | 60 | 0 | 109 | 212 | 254 | 357 | 6.21e-11 | 61.2 |
| Msa0065890 | AT2G02170.1 | 42.308 | 104 | 60 | 0 | 109 | 212 | 379 | 482 | 6.43e-11 | 61.6 |
| Msa0065890 | AT2G02170.2 | 42.308 | 104 | 60 | 0 | 109 | 212 | 379 | 482 | 6.43e-11 | 61.6 |
| Msa0065890 | AT2G02170.5 | 42.308 | 104 | 60 | 0 | 109 | 212 | 379 | 482 | 6.43e-11 | 61.6 |
| Msa0065890 | AT2G02170.4 | 42.308 | 104 | 60 | 0 | 109 | 212 | 379 | 482 | 6.43e-11 | 61.6 |
Find 68 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGACCAAAGAGTTTCTT+TGG | 0.217523 | 1_2:+28755959 | None:intergenic |
| ATTACAAGTGTTGGAGAGTT+AGG | 0.248611 | 1_2:+28758172 | None:intergenic |
| TCTTAGCTGGGTGGGTTTAT+TGG | 0.252899 | 1_2:+28758277 | None:intergenic |
| TCCTCAGCTACATCTTTCTT+TGG | 0.259226 | 1_2:+28757915 | None:intergenic |
| GGAACAACTAGAGAAGAAAA+AGG | 0.285933 | 1_2:-28756128 | Msa0065890:CDS |
| TCGATAGAGCCGCCCTCTTT+TGG | 0.297765 | 1_2:+28756638 | None:intergenic |
| TCTTTCTAAGAAAGAAGAAT+TGG | 0.340874 | 1_2:+28758070 | None:intergenic |
| GTTGTATATATCCATTACTT+TGG | 0.347191 | 1_2:-28755799 | Msa0065890:three_prime_UTR |
| TTGTATATATCCATTACTTT+GGG | 0.362237 | 1_2:-28755798 | Msa0065890:three_prime_UTR |
| ACATCTTTCTTTGGAGCCTC+AGG | 0.378728 | 1_2:+28757924 | None:intergenic |
| ACTGTTCTCCCATGCTGTTA+TGG | 0.379485 | 1_2:+28756275 | None:intergenic |
| ATTCTACTAAAAGTCTTAGC+TGG | 0.382428 | 1_2:+28758264 | None:intergenic |
| GCCTCAGGGAGAGGAGGAGA+AGG | 0.390077 | 1_2:+28757939 | None:intergenic |
| ACAGCTCCAAAGAAACTCTT+TGG | 0.398417 | 1_2:-28755965 | Msa0065890:CDS |
| AGTTGGCACAGCGCACCAAT+AGG | 0.402374 | 1_2:+28758314 | None:intergenic |
| AAGAAAGATATTACAAGTGT+TGG | 0.420015 | 1_2:+28758163 | None:intergenic |
| AAGAGGTAGCTGCAAAATAC+AGG | 0.425184 | 1_2:-28755997 | Msa0065890:CDS |
| CTGAGCTATGACAAGAGCTT+TGG | 0.429684 | 1_2:+28757836 | None:intergenic |
| GCTGCAAAATACAGGGCAAC+TGG | 0.430234 | 1_2:-28755989 | Msa0065890:CDS |
| TTCTTTGGAGCCTCAGGGAG+AGG | 0.442969 | 1_2:+28757930 | None:intergenic |
| TTACAAGTGTTGGAGAGTTA+GGG | 0.454246 | 1_2:+28758173 | None:intergenic |
| AATAAGTTGTCTGTCCCTAT+TGG | 0.457363 | 1_2:-28758329 | None:intergenic |
| AGCTGGGTGGGTTTATTGGT+AGG | 0.476393 | 1_2:+28758281 | None:intergenic |
| TCAGTTGAAGCAGGTGGTGG+TGG | 0.488620 | 1_2:+28757978 | None:intergenic |
| GCTTTGGAGTCATCAACAAC+AGG | 0.488845 | 1_2:+28757852 | None:intergenic |
| GTTGAAGCAGGTGGTGGTGG+AGG | 0.497469 | 1_2:+28757981 | None:intergenic |
| ACTCACTCATTCTTAGATGT+TGG | 0.501732 | 1_2:-28755712 | Msa0065890:three_prime_UTR |
| GTTGGCACAGCGCACCAATA+GGG | 0.504102 | 1_2:+28758315 | None:intergenic |
| TATTATAGTTGTAGAATGAA+AGG | 0.511225 | 1_2:+28758206 | None:intergenic |
| GAGTCAGTGGTCTAATACAA+AGG | 0.513455 | 1_2:+28755731 | None:intergenic |
| ATTATAGTTGTAGAATGAAA+GGG | 0.515536 | 1_2:+28758207 | None:intergenic |
| TGCTACAATGTTCAAGATTG+TGG | 0.518850 | 1_2:-28755932 | Msa0065890:three_prime_UTR |
| CAAGGCAGCTGAAGAAAAGA+AGG | 0.521517 | 1_2:-28756062 | Msa0065890:CDS |
| TCATCAACAACAGGAGGAGG+AGG | 0.524276 | 1_2:+28757861 | None:intergenic |
| TTCTACTAAAAGTCTTAGCT+GGG | 0.524449 | 1_2:+28758265 | None:intergenic |
| TCAACAACAGGAGGAGGAGG+AGG | 0.529147 | 1_2:+28757864 | None:intergenic |
| CCTCAGGGAGAGGAGGAGAA+GGG | 0.530917 | 1_2:+28757940 | None:intergenic |
| TGGTAGGTACTCTTGTGAGT+TGG | 0.531008 | 1_2:+28758297 | None:intergenic |
| GGCTGTCACTAATCAAAGCA+TGG | 0.531510 | 1_2:-28756489 | Msa0065890:CDS |
| CTCAGGGAGAGGAGGAGAAG+GGG | 0.532056 | 1_2:+28757941 | None:intergenic |
| GTCTCAGTTGAAGCAGGTGG+TGG | 0.537604 | 1_2:+28757975 | None:intergenic |
| GGAGGAGGATTATTATCTTG+TGG | 0.541469 | 1_2:+28757879 | None:intergenic |
| CAAGAGTTGCAACAGAAAAG+AGG | 0.549164 | 1_2:-28756510 | Msa0065890:CDS |
| ACTAAAAGTCTTAGCTGGGT+GGG | 0.558329 | 1_2:+28758269 | None:intergenic |
| TTTGGAGCCTCAGGGAGAGG+AGG | 0.558769 | 1_2:+28757933 | None:intergenic |
| CATCTTTCTTTGGAGCCTCA+GGG | 0.563937 | 1_2:+28757925 | None:intergenic |
| TGCTGAAGAGAAACCAAAAG+AGG | 0.570519 | 1_2:-28756651 | Msa0065890:CDS |
| GAGTCATCAACAACAGGAGG+AGG | 0.575285 | 1_2:+28757858 | None:intergenic |
| TCCAAAGAAAGATGTAGCTG+AGG | 0.578942 | 1_2:-28757916 | Msa0065890:CDS |
| GCTATGATTGAGGCAAAGAA+AGG | 0.579579 | 1_2:-28756040 | Msa0065890:CDS |
| AACTTTCATCCATAACAGCA+TGG | 0.579782 | 1_2:-28756284 | Msa0065890:CDS |
| TACTAAAAGTCTTAGCTGGG+TGG | 0.586125 | 1_2:+28758268 | None:intergenic |
| AGAATTACTCAAAGCAGAAG+AGG | 0.586549 | 1_2:-28756014 | Msa0065890:CDS |
| CAAAATAGCAGCACTTCACA+AGG | 0.592299 | 1_2:-28756080 | Msa0065890:CDS |
| AAGTGTTGGAGAGTTAGGGT+TGG | 0.592661 | 1_2:+28758177 | None:intergenic |
| AGAAAAGAAGGCTATGATTG+AGG | 0.593916 | 1_2:-28756050 | Msa0065890:CDS |
| GTAGTCGTCTCAGTTGAAGC+AGG | 0.595047 | 1_2:+28757969 | None:intergenic |
| AGCTGAATTGAGAAAACTTG+AGG | 0.599321 | 1_2:-28756235 | Msa0065890:intron |
| GCTGTCACTAATCAAAGCAT+GGG | 0.606143 | 1_2:-28756488 | Msa0065890:CDS |
| ACTTTCATCCATAACAGCAT+GGG | 0.613867 | 1_2:-28756283 | Msa0065890:CDS |
| CCCTTCTCCTCCTCTCCCTG+AGG | 0.617803 | 1_2:-28757940 | Msa0065890:CDS |
| AGAGGTAGCTGCAAAATACA+GGG | 0.626640 | 1_2:-28755996 | Msa0065890:CDS |
| GTCGTCTCAGTTGAAGCAGG+TGG | 0.640903 | 1_2:+28757972 | None:intergenic |
| TCTAAGAATGAGTGAGTCAG+TGG | 0.643025 | 1_2:+28755718 | None:intergenic |
| GCTGAAGAGAAACCAAAAGA+GGG | 0.649888 | 1_2:-28756650 | Msa0065890:CDS |
| TTGGAGTCATCAACAACAGG+AGG | 0.656015 | 1_2:+28757855 | None:intergenic |
| GAAGAGAAACCAAAAGAGGG+CGG | 0.689508 | 1_2:-28756647 | Msa0065890:CDS |
| GAGGGCGGCTCTATCGACCG+TGG | 0.735676 | 1_2:-28756632 | Msa0065890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGTTTAAATTTTATTTTAT+TGG | - | chr1_2:28756244-28756263 | Msa0065890:CDS | 10.0% |
| !!! | ACAATTTTATTATAGAAAAA+AGG | - | chr1_2:28756278-28756297 | Msa0065890:CDS | 10.0% |
| !! | TTTGAAAAAAATCAATTATA+GGG | + | chr1_2:28756417-28756436 | None:intergenic | 10.0% |
| !!! | AAATTATTACTTTTAATAGA+AGG | - | chr1_2:28756654-28756673 | Msa0065890:CDS | 10.0% |
| !!! | AATTATTACTTTTAATAGAA+GGG | - | chr1_2:28756655-28756674 | Msa0065890:CDS | 10.0% |
| !!! | TATGTTTTATCTATCTATTT+TGG | - | chr1_2:28756318-28756337 | Msa0065890:intron | 15.0% |
| !!! | CTTTGAAAAAAATCAATTAT+AGG | + | chr1_2:28756418-28756437 | None:intergenic | 15.0% |
| !!! | ATCAATACATATTTTTTATC+TGG | - | chr1_2:28756464-28756483 | Msa0065890:CDS | 15.0% |
| !!! | TTTAAATTTGTGCATATTTT+TGG | + | chr1_2:28757092-28757111 | None:intergenic | 15.0% |
| !! | TGACTTAAAAACAAATATTA+CGG | + | chr1_2:28757269-28757288 | None:intergenic | 15.0% |
| !! | ATATAATTCTGTTGTTAATT+TGG | - | chr1_2:28757319-28757338 | Msa0065890:intron | 15.0% |
| !! | ATTATAGTTGTAGAATGAAA+GGG | + | chr1_2:28755813-28755832 | None:intergenic | 20.0% |
| !! | TATTATAGTTGTAGAATGAA+AGG | + | chr1_2:28755814-28755833 | None:intergenic | 20.0% |
| !! | CTATAATAAAATTGTTTCCT+TGG | + | chr1_2:28756273-28756292 | None:intergenic | 20.0% |
| !!! | TCTATTTTGGTTTGTTTTAT+TGG | - | chr1_2:28756331-28756350 | Msa0065890:intron | 20.0% |
| !! | TAATAGCAAAATTGAATTGA+AGG | - | chr1_2:28756564-28756583 | Msa0065890:intron | 20.0% |
| !! | TTAATTGATTAGATTGTAGT+TGG | + | chr1_2:28756936-28756955 | None:intergenic | 20.0% |
| !! | AATCTAATCAATTAAGTGTA+TGG | - | chr1_2:28756941-28756960 | Msa0065890:intron | 20.0% |
| !!! | TAATGCTTAATGTGTATTTT+TGG | - | chr1_2:28757601-28757620 | Msa0065890:intron | 20.0% |
| !! | TTGTATATATCCATTACTTT+GGG | - | chr1_2:28758219-28758238 | Msa0065890:five_prime_UTR | 20.0% |
| ! | AAGAAAGATATTACAAGTGT+TGG | + | chr1_2:28755857-28755876 | None:intergenic | 25.0% |
| !!! | AAGAATTGGAACAACTTTTT+TGG | + | chr1_2:28755936-28755955 | None:intergenic | 25.0% |
| !! | TCTTTCTAAGAAAGAAGAAT+TGG | + | chr1_2:28755950-28755969 | None:intergenic | 25.0% |
| !!! | GATTCAGATTCTATCTTTTT+TGG | + | chr1_2:28756006-28756025 | None:intergenic | 25.0% |
| !!! | TTTTATTTTATTGGTTGCCA+AGG | - | chr1_2:28756253-28756272 | Msa0065890:CDS | 25.0% |
| ! | TTATAGGGAAAATTTGAAGA+TGG | + | chr1_2:28756402-28756421 | None:intergenic | 25.0% |
| ! | AAACATGCATTAAGATTCTA+GGG | - | chr1_2:28757041-28757060 | Msa0065890:intron | 25.0% |
| !!! | AAAACGGTAAAGGTTATTTT+GGG | + | chr1_2:28757225-28757244 | None:intergenic | 25.0% |
| ! | AAACAAATATTACGGATGAA+TGG | + | chr1_2:28757261-28757280 | None:intergenic | 25.0% |
| ! | TATATCAATGTGATTATACG+CGG | + | chr1_2:28757304-28757323 | None:intergenic | 25.0% |
| ! | AATACACATTAAGCATTAGA+TGG | + | chr1_2:28757599-28757618 | None:intergenic | 25.0% |
| ! | TACTAATCTCCTTAGAATTA+TGG | + | chr1_2:28757664-28757683 | None:intergenic | 25.0% |
| ! | ACATTGAATGTGACAAAATA+TGG | - | chr1_2:28757831-28757850 | Msa0065890:intron | 25.0% |
| ! | CATTGAATGTGACAAAATAT+GGG | - | chr1_2:28757832-28757851 | Msa0065890:intron | 25.0% |
| ! | ATTGAATGTGACAAAATATG+GGG | - | chr1_2:28757833-28757852 | Msa0065890:intron | 25.0% |
| !!! | TTAATTACTTTTCACTGTGT+AGG | - | chr1_2:28757868-28757887 | Msa0065890:CDS | 25.0% |
| ! | GTTGTATATATCCATTACTT+TGG | - | chr1_2:28758218-28758237 | Msa0065890:five_prime_UTR | 25.0% |
| !!! | TGTTTTTATTCCCAAAGTAA+TGG | + | chr1_2:28758232-28758251 | None:intergenic | 25.0% |
| TTCTACTAAAAGTCTTAGCT+GGG | + | chr1_2:28755755-28755774 | None:intergenic | 30.0% | |
| ATTCTACTAAAAGTCTTAGC+TGG | + | chr1_2:28755756-28755775 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTGTTTTATTGGAC+TGG | - | chr1_2:28756336-28756355 | Msa0065890:intron | 30.0% |
| !!! | TGTTTTATTGGACTGGTATA+AGG | - | chr1_2:28756343-28756362 | Msa0065890:intron | 30.0% |
| ATATAAGCGAAATAGTTGAG+AGG | - | chr1_2:28756507-28756526 | Msa0065890:CDS | 30.0% | |
| GGAAACTGAGAAAAATACAA+GGG | + | chr1_2:28756836-28756855 | None:intergenic | 30.0% | |
| TGGAAACTGAGAAAAATACA+AGG | + | chr1_2:28756837-28756856 | None:intergenic | 30.0% | |
| ATCAGAAAAATTCCAGGAAA+TGG | + | chr1_2:28756857-28756876 | None:intergenic | 30.0% | |
| ACAATCATCAGAAAAATTCC+AGG | + | chr1_2:28756863-28756882 | None:intergenic | 30.0% | |
| TTTCTGATGATTGTTCTCTT+AGG | - | chr1_2:28756869-28756888 | Msa0065890:intron | 30.0% | |
| TTGATTAGATTGTAGTTGGA+TGG | + | chr1_2:28756932-28756951 | None:intergenic | 30.0% | |
| CTAGAATCTTAATGCATGTT+TGG | + | chr1_2:28757042-28757061 | None:intergenic | 30.0% | |
| CAAACATGCATTAAGATTCT+AGG | - | chr1_2:28757040-28757059 | Msa0065890:intron | 30.0% | |
| AGAAAAGAAACACATTAGCT+TGG | - | chr1_2:28757111-28757130 | Msa0065890:intron | 30.0% | |
| ! | GAAAACGGTAAAGGTTATTT+TGG | + | chr1_2:28757226-28757245 | None:intergenic | 30.0% |
| CTAAAACATGAAAACGGTAA+AGG | + | chr1_2:28757235-28757254 | None:intergenic | 30.0% | |
| ! | CTTTACCGTTTTCATGTTTT+AGG | - | chr1_2:28757233-28757252 | Msa0065890:intron | 30.0% |
| TGGTTCCTAAAACATGAAAA+CGG | + | chr1_2:28757241-28757260 | None:intergenic | 30.0% | |
| CAATGACAAGATATATACCA+CGG | + | chr1_2:28757405-28757424 | None:intergenic | 30.0% | |
| TAGCATATGAAGTGCATAAA+GGG | + | chr1_2:28757441-28757460 | None:intergenic | 30.0% | |
| TTAGCATATGAAGTGCATAA+AGG | + | chr1_2:28757442-28757461 | None:intergenic | 30.0% | |
| ACTTCATATGCTAACATTAC+AGG | - | chr1_2:28757448-28757467 | Msa0065890:intron | 30.0% | |
| TTGAATGTGACAAAATATGG+GGG | - | chr1_2:28757834-28757853 | Msa0065890:intron | 30.0% | |
| GAACAACTAGAGAAGAAAAA+GGG | - | chr1_2:28757890-28757909 | Msa0065890:CDS | 30.0% | |
| AAAAGACCAAAGAGTTTCTT+TGG | + | chr1_2:28758061-28758080 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTCATGTGTGATT+TGG | - | chr1_2:28758140-28758159 | Msa0065890:five_prime_UTR | 30.0% |
| !! | TTACAAGTGTTGGAGAGTTA+GGG | + | chr1_2:28755847-28755866 | None:intergenic | 35.0% |
| !! | ATTACAAGTGTTGGAGAGTT+AGG | + | chr1_2:28755848-28755867 | None:intergenic | 35.0% |
| ! | TTTTCTCAGTTTCCATTTCC+TGG | - | chr1_2:28756842-28756861 | Msa0065890:intron | 35.0% |
| GATTGTAGTTGGATGGTAAT+TGG | + | chr1_2:28756925-28756944 | None:intergenic | 35.0% | |
| !! | GGGTAGCTTTAAAGAAATCA+AGG | + | chr1_2:28757007-28757026 | None:intergenic | 35.0% |
| TTAATGCATGTTTGGATGCA+CGG | + | chr1_2:28757034-28757053 | None:intergenic | 35.0% | |
| TCACTTATAAACTCGTGTTC+AGG | + | chr1_2:28757157-28757176 | None:intergenic | 35.0% | |
| !! | ACTGATAAAACCGGTTTGTA+AGG | + | chr1_2:28757192-28757211 | None:intergenic | 35.0% |
| CGAACTCAAACTGATAAAAC+CGG | + | chr1_2:28757201-28757220 | None:intergenic | 35.0% | |
| !! | CGGTTTTATCAGTTTGAGTT+CGG | - | chr1_2:28757199-28757218 | Msa0065890:intron | 35.0% |
| TATGGTGACTCAACGTAATA+AGG | + | chr1_2:28757646-28757665 | None:intergenic | 35.0% | |
| GTTGAGTCACCATAATTCTA+AGG | - | chr1_2:28757652-28757671 | Msa0065890:intron | 35.0% | |
| AACTTTCATCCATAACAGCA+TGG | - | chr1_2:28757733-28757752 | Msa0065890:intron | 35.0% | |
| ACTTTCATCCATAACAGCAT+GGG | - | chr1_2:28757734-28757753 | Msa0065890:intron | 35.0% | |
| AGCTGAATTGAGAAAACTTG+AGG | - | chr1_2:28757782-28757801 | Msa0065890:intron | 35.0% | |
| GGAACAACTAGAGAAGAAAA+AGG | - | chr1_2:28757889-28757908 | Msa0065890:CDS | 35.0% | |
| AGAAAAGAAGGCTATGATTG+AGG | - | chr1_2:28757967-28757986 | Msa0065890:CDS | 35.0% | |
| AGAATTACTCAAAGCAGAAG+AGG | - | chr1_2:28758003-28758022 | Msa0065890:CDS | 35.0% | |
| TGCTACAATGTTCAAGATTG+TGG | - | chr1_2:28758085-28758104 | Msa0065890:five_prime_UTR | 35.0% | |
| ACTCACTCATTCTTAGATGT+TGG | - | chr1_2:28758305-28758324 | Msa0065890:five_prime_UTR | 35.0% | |
| ACTAAAAGTCTTAGCTGGGT+GGG | + | chr1_2:28755751-28755770 | None:intergenic | 40.0% | |
| TACTAAAAGTCTTAGCTGGG+TGG | + | chr1_2:28755752-28755771 | None:intergenic | 40.0% | |
| TCCAAAGAAAGATGTAGCTG+AGG | - | chr1_2:28756101-28756120 | Msa0065890:CDS | 40.0% | |
| TCCTCAGCTACATCTTTCTT+TGG | + | chr1_2:28756105-28756124 | None:intergenic | 40.0% | |
| GGAGGAGGATTATTATCTTG+TGG | + | chr1_2:28756141-28756160 | None:intergenic | 40.0% | |
| TGTCCTATTGAGTTTCCTGA+AGG | - | chr1_2:28756725-28756744 | Msa0065890:intron | 40.0% | |
| GTCCTATTGAGTTTCCTGAA+GGG | - | chr1_2:28756726-28756745 | Msa0065890:intron | 40.0% | |
| TCCTATTGAGTTTCCTGAAG+GGG | - | chr1_2:28756727-28756746 | Msa0065890:intron | 40.0% | |
| ! | TTTTCTTTGTTACCCCCTTC+AGG | + | chr1_2:28756743-28756762 | None:intergenic | 40.0% |
| ATGTTTGGATGCACGGTATT+GGG | + | chr1_2:28757027-28757046 | None:intergenic | 40.0% | |
| !! | TGGTCTTGTAATCAGTGCAT+TGG | - | chr1_2:28757131-28757150 | Msa0065890:intron | 40.0% |
| !! | TAAAACCGGTTTGTAAGGTG+AGG | + | chr1_2:28757187-28757206 | None:intergenic | 40.0% |
| TGCTGAAGAGAAACCAAAAG+AGG | - | chr1_2:28757366-28757385 | Msa0065890:intron | 40.0% | |
| GCTGAAGAGAAACCAAAAGA+GGG | - | chr1_2:28757367-28757386 | Msa0065890:intron | 40.0% | |
| CAAGAGTTGCAACAGAAAAG+AGG | - | chr1_2:28757507-28757526 | Msa0065890:intron | 40.0% | |
| GCTGTCACTAATCAAAGCAT+GGG | - | chr1_2:28757529-28757548 | Msa0065890:intron | 40.0% | |
| CAAAATAGCAGCACTTCACA+AGG | - | chr1_2:28757937-28757956 | Msa0065890:CDS | 40.0% | |
| GCTATGATTGAGGCAAAGAA+AGG | - | chr1_2:28757977-28757996 | Msa0065890:CDS | 40.0% | |
| AAGAGGTAGCTGCAAAATAC+AGG | - | chr1_2:28758020-28758039 | Msa0065890:CDS | 40.0% | |
| AGAGGTAGCTGCAAAATACA+GGG | - | chr1_2:28758021-28758040 | Msa0065890:CDS | 40.0% | |
| ACAGCTCCAAAGAAACTCTT+TGG | - | chr1_2:28758052-28758071 | Msa0065890:exon | 40.0% | |
| GAGTCAGTGGTCTAATACAA+AGG | + | chr1_2:28758289-28758308 | None:intergenic | 40.0% | |
| TCTAAGAATGAGTGAGTCAG+TGG | + | chr1_2:28758302-28758321 | None:intergenic | 40.0% | |
| TGGTAGGTACTCTTGTGAGT+TGG | + | chr1_2:28755723-28755742 | None:intergenic | 45.0% | |
| ! | TCTTAGCTGGGTGGGTTTAT+TGG | + | chr1_2:28755743-28755762 | None:intergenic | 45.0% |
| !! | AAGTGTTGGAGAGTTAGGGT+TGG | + | chr1_2:28755843-28755862 | None:intergenic | 45.0% |
| !! | CATCTTTCTTTGGAGCCTCA+GGG | + | chr1_2:28756095-28756114 | None:intergenic | 45.0% |
| !! | ACATCTTTCTTTGGAGCCTC+AGG | + | chr1_2:28756096-28756115 | None:intergenic | 45.0% |
| TTGGAGTCATCAACAACAGG+AGG | + | chr1_2:28756165-28756184 | None:intergenic | 45.0% | |
| !! | GCTTTGGAGTCATCAACAAC+AGG | + | chr1_2:28756168-28756187 | None:intergenic | 45.0% |
| CTGAGCTATGACAAGAGCTT+TGG | + | chr1_2:28756184-28756203 | None:intergenic | 45.0% | |
| CCTATTGAGTTTCCTGAAGG+GGG | - | chr1_2:28756728-28756747 | Msa0065890:intron | 45.0% | |
| CATGTTTGGATGCACGGTAT+TGG | + | chr1_2:28757028-28757047 | None:intergenic | 45.0% | |
| CGAATCCTCACCTTACAAAC+CGG | - | chr1_2:28757179-28757198 | Msa0065890:intron | 45.0% | |
| ATTATACGCGGTCGATGTGA+AGG | + | chr1_2:28757292-28757311 | None:intergenic | 45.0% | |
| GAAGAGAAACCAAAAGAGGG+CGG | - | chr1_2:28757370-28757389 | Msa0065890:intron | 45.0% | |
| GGCTGTCACTAATCAAAGCA+TGG | - | chr1_2:28757528-28757547 | Msa0065890:intron | 45.0% | |
| ACTGTTCTCCCATGCTGTTA+TGG | + | chr1_2:28757745-28757764 | None:intergenic | 45.0% | |
| CAAGGCAGCTGAAGAAAAGA+AGG | - | chr1_2:28757955-28757974 | Msa0065890:CDS | 45.0% | |
| ! | AGCTGGGTGGGTTTATTGGT+AGG | + | chr1_2:28755739-28755758 | None:intergenic | 50.0% |
| GTAGTCGTCTCAGTTGAAGC+AGG | + | chr1_2:28756051-28756070 | None:intergenic | 50.0% | |
| TCATCAACAACAGGAGGAGG+AGG | + | chr1_2:28756159-28756178 | None:intergenic | 50.0% | |
| GAGTCATCAACAACAGGAGG+AGG | + | chr1_2:28756162-28756181 | None:intergenic | 50.0% | |
| CCCCCTTCAGGAAACTCAAT+AGG | + | chr1_2:28756731-28756750 | None:intergenic | 50.0% | |
| GCTGCAAAATACAGGGCAAC+TGG | - | chr1_2:28758028-28758047 | Msa0065890:CDS | 50.0% | |
| GTTGGCACAGCGCACCAATA+GGG | + | chr1_2:28755705-28755724 | None:intergenic | 55.0% | |
| AGTTGGCACAGCGCACCAAT+AGG | + | chr1_2:28755706-28755725 | None:intergenic | 55.0% | |
| ! | TCAGTTGAAGCAGGTGGTGG+TGG | + | chr1_2:28756042-28756061 | None:intergenic | 55.0% |
| GTCTCAGTTGAAGCAGGTGG+TGG | + | chr1_2:28756045-28756064 | None:intergenic | 55.0% | |
| GTCGTCTCAGTTGAAGCAGG+TGG | + | chr1_2:28756048-28756067 | None:intergenic | 55.0% | |
| !! | TTCTTTGGAGCCTCAGGGAG+AGG | + | chr1_2:28756090-28756109 | None:intergenic | 55.0% |
| TCAACAACAGGAGGAGGAGG+AGG | + | chr1_2:28756156-28756175 | None:intergenic | 55.0% | |
| ! | TCGATAGAGCCGCCCTCTTT+TGG | + | chr1_2:28757382-28757401 | None:intergenic | 55.0% |
| !! | GTTGAAGCAGGTGGTGGTGG+AGG | + | chr1_2:28756039-28756058 | None:intergenic | 60.0% |
| CTCAGGGAGAGGAGGAGAAG+GGG | + | chr1_2:28756079-28756098 | None:intergenic | 60.0% | |
| CCTCAGGGAGAGGAGGAGAA+GGG | + | chr1_2:28756080-28756099 | None:intergenic | 60.0% | |
| ! | TTTGGAGCCTCAGGGAGAGG+AGG | + | chr1_2:28756087-28756106 | None:intergenic | 60.0% |
| CCCTTCTCCTCCTCTCCCTG+AGG | - | chr1_2:28756077-28756096 | Msa0065890:CDS | 65.0% | |
| GCCTCAGGGAGAGGAGGAGA+AGG | + | chr1_2:28756081-28756100 | None:intergenic | 65.0% | |
| GAGGGCGGCTCTATCGACCG+TGG | - | chr1_2:28757385-28757404 | Msa0065890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 28755696 | 28758343 | 28755696 | ID=Msa0065890;Name=Msa0065890 |
| chr1_2 | mRNA | 28755696 | 28758343 | 28755696 | ID=Msa0065890-mRNA-1;Parent=Msa0065890;Name=Msa0065890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=289|1|1|1|1|1|5|259|212 |
| chr1_2 | exon | 28755696 | 28756149 | 28755696 | ID=Msa0065890-mRNA-1:exon:9811;Parent=Msa0065890-mRNA-1 |
| chr1_2 | exon | 28756236 | 28756317 | 28756236 | ID=Msa0065890-mRNA-1:exon:9810;Parent=Msa0065890-mRNA-1 |
| chr1_2 | exon | 28756457 | 28756544 | 28756457 | ID=Msa0065890-mRNA-1:exon:9809;Parent=Msa0065890-mRNA-1 |
| chr1_2 | exon | 28756633 | 28756686 | 28756633 | ID=Msa0065890-mRNA-1:exon:9808;Parent=Msa0065890-mRNA-1 |
| chr1_2 | exon | 28757835 | 28758343 | 28757835 | ID=Msa0065890-mRNA-1:exon:9807;Parent=Msa0065890-mRNA-1 |
| chr1_2 | five_prime_UTR | 28758055 | 28758343 | 28758055 | ID=Msa0065890-mRNA-1:five_prime_utr;Parent=Msa0065890-mRNA-1 |
| chr1_2 | CDS | 28757835 | 28758054 | 28757835 | ID=Msa0065890-mRNA-1:cds;Parent=Msa0065890-mRNA-1 |
| chr1_2 | CDS | 28756633 | 28756686 | 28756633 | ID=Msa0065890-mRNA-1:cds;Parent=Msa0065890-mRNA-1 |
| chr1_2 | CDS | 28756457 | 28756544 | 28756457 | ID=Msa0065890-mRNA-1:cds;Parent=Msa0065890-mRNA-1 |
| chr1_2 | CDS | 28756236 | 28756317 | 28756236 | ID=Msa0065890-mRNA-1:cds;Parent=Msa0065890-mRNA-1 |
| chr1_2 | CDS | 28755955 | 28756149 | 28755955 | ID=Msa0065890-mRNA-1:cds;Parent=Msa0065890-mRNA-1 |
| chr1_2 | three_prime_UTR | 28755696 | 28755954 | 28755696 | ID=Msa0065890-mRNA-1:three_prime_utr;Parent=Msa0065890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
