AlfalfaGEDB | Msa0832970

M. sativa cultivar zhongmu-4 / Msa0832970

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141
PFAM: PF03790.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832970	XP_039690416.1	98.288	292	1	2	1	288	1	292	0.0	584

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832970	sp\|Q9FPQ8\|KNAT7_ARATH	79.181	293	52	4	1	287	1	290	2.35e-168	471

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832970	G7KES2	98.288	292	1	2	1	288	1	292	0.0	584

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TFs/TRs:

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Gene ID	Type	Classification
Msa0832970	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004790	Msa0832970	-0.800714	1.266153e-48	-8.615850e-47
Msa0023840	Msa0832970	-0.803603	3.222410e-49	-8.615850e-47
Msa0029850	Msa0832970	0.844895	5.694128e-59	-8.615850e-47
Msa0039330	Msa0832970	0.861585	9.249991e-64	-8.615850e-47
Msa0050380	Msa0832970	0.835673	1.463335e-56	-8.615850e-47
Msa0065890	Msa0832970	0.834562	2.789134e-56	-8.615850e-47
Msa0077180	Msa0832970	0.829973	3.814283e-55	-8.615850e-47
Msa0090100	Msa0832970	0.802209	6.254009e-49	-8.615850e-47
Msa0102120	Msa0832970	0.849149	3.892186e-60	-8.615850e-47
Msa0124550	Msa0832970	0.813825	2.103991e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832970	MtrunA17_Chr5g0398181	98.288	292	1	2	1	288	1	292	0.0	584
Msa0832970	MtrunA17_Chr1g0149651	70.036	277	79	2	15	288	161	436	1.87e-137	395
Msa0832970	MtrunA17_Chr3g0137241	69.057	265	81	1	25	288	107	371	1.99e-133	382
Msa0832970	MtrunA17_Chr2g0305101	68.679	265	80	2	23	287	93	354	9.04e-131	375
Msa0832970	MtrunA17_Chr4g0065241	65.693	274	91	1	2	275	48	318	1.77e-129	371
Msa0832970	MtrunA17_Chr1g0192791	34.375	256	138	5	21	272	16	245	1.02e-32	121
Msa0832970	MtrunA17_Chr1g0151961	32.806	253	145	6	20	272	115	342	6.60e-30	116
Msa0832970	MtrunA17_Chr5g0413201	34.387	253	132	6	24	272	72	294	7.88e-29	112
Msa0832970	MtrunA17_Chr5g0439391	30.364	247	139	4	27	272	49	263	8.22e-24	98.2
Msa0832970	MtrunA17_Chr2g0289201	29.317	249	148	4	24	272	117	337	1.19e-23	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832970	AT1G62990.1	79.181	293	52	4	1	287	1	290	2.38e-169	471
Msa0832970	AT5G25220.2	66.330	297	79	5	7	288	129	419	1.75e-135	390
Msa0832970	AT5G25220.1	66.216	296	79	5	7	287	129	418	1.11e-134	388
Msa0832970	AT5G11060.1	68.401	269	79	2	20	287	119	382	1.80e-132	381
Msa0832970	AT4G32040.2	61.592	289	94	6	12	288	96	379	1.26e-117	343
Msa0832970	AT4G32040.1	61.592	289	94	6	12	288	96	379	2.37e-117	342
Msa0832970	AT1G70510.1	33.597	253	132	5	24	272	69	289	2.92e-33	124
Msa0832970	AT1G70510.2	32.411	253	139	4	24	272	69	293	3.36e-32	121
Msa0832970	AT1G23380.1	34.800	250	133	6	24	272	85	305	3.37e-32	121
Msa0832970	AT1G23380.2	34.524	252	133	7	24	272	85	307	2.60e-30	116

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Find 86 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCAAGAACCAAGCTTA+GGG	0.512228	5_4:-6145742	Msa0832970:CDS
AAGAAGAGCTGGAAAATTAC+CGG	0.413561	5_4:-6142309	Msa0832970:CDS
AAGAATTGAAGATGTAAGGG+AGG	0.579355	5_4:-6142345	Msa0832970:CDS
AAGACTGAAGTTGTGTCACC+CGG	0.596174	5_4:+6142290	None:intergenic
AAGTTGGTAGTATTAATTAA+AGG	0.332442	5_4:+6145776	None:intergenic
AATAATAGTAGATATTATTA+TGG	0.322689	5_4:-6141676	Msa0832970:three_prime_UTR
AATACCTTACAAGCCCTCAC+AGG	0.617490	5_4:-6145012	Msa0832970:intron
AATTAACATACAGTTGGGTA+AGG	0.529902	5_4:+6142236	None:intergenic
ACATAGTAATATTCCTTCAC+CGG	0.512624	5_4:+6141465	None:intergenic
ACTCAAAATTGAGCTCAAAC+AGG	0.454282	5_4:-6142479	Msa0832970:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAATGGTAACTGATCTAT+AGG	+	chr5_4:6141964-6141983	None:intergenic	30.0%
TTGAGGCTTAGTAAAATTCA+TGG	-	chr5_4:6142274-6142293	Msa0832970:CDS	30.0%
TAGTAAAATTCATGGCTTTC+TGG	-	chr5_4:6142282-6142301	Msa0832970:CDS	30.0%
ACTGTTTATCCAAACAACTT+CGG	-	chr5_4:6142757-6142776	Msa0832970:intron	30.0%
ATTATAACACCGAAGTTGTT+TGG	+	chr5_4:6142769-6142788	None:intergenic	30.0%
CAAACTAAACTCTTCCAAAT+TGG	+	chr5_4:6143128-6143147	None:intergenic	30.0%
CAATTTGGAAGAGTTTAGTT+TGG	-	chr5_4:6143126-6143145	Msa0832970:intron	30.0%
CGGTGAATTTAACATAATCA+CGG	-	chr5_4:6143844-6143863	Msa0832970:intron	30.0%
TTCTCATAGTACGAAAAGAA+TGG	+	chr5_4:6143914-6143933	None:intergenic	30.0%
TAATTTGAAGACGTCCAAAA+GGG	+	chr5_4:6144132-6144151	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	6141450	6146126	6141450	ID=Msa0832970;Name=Msa0832970
chr5_4	mRNA	6141450	6146126	6141450	ID=Msa0832970-mRNA-1;Parent=Msa0832970;Name=Msa0832970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=316\|1\|1\|1\|0.8\|0.66\|6\|400\|288
chr5_4	exon	6141450	6141990	6141450	ID=Msa0832970-mRNA-1:exon:2649;Parent=Msa0832970-mRNA-1
chr5_4	exon	6142247	6142378	6142247	ID=Msa0832970-mRNA-1:exon:2648;Parent=Msa0832970-mRNA-1
chr5_4	exon	6142480	6142679	6142480	ID=Msa0832970-mRNA-1:exon:2647;Parent=Msa0832970-mRNA-1
chr5_4	exon	6145013	6145133	6145013	ID=Msa0832970-mRNA-1:exon:2646;Parent=Msa0832970-mRNA-1
chr5_4	exon	6145490	6145871	6145490	ID=Msa0832970-mRNA-1:exon:2645;Parent=Msa0832970-mRNA-1
chr5_4	exon	6145920	6146126	6145920	ID=Msa0832970-mRNA-1:exon:2644;Parent=Msa0832970-mRNA-1
chr5_4	five_prime_UTR	6145920	6146126	6145920	ID=Msa0832970-mRNA-1:five_prime_utr;Parent=Msa0832970-mRNA-1
chr5_4	five_prime_UTR	6145763	6145871	6145763	ID=Msa0832970-mRNA-1:five_prime_utr;Parent=Msa0832970-mRNA-1
chr5_4	CDS	6145490	6145762	6145490	ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1
chr5_4	CDS	6145013	6145133	6145013	ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1
chr5_4	CDS	6142480	6142679	6142480	ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1
chr5_4	CDS	6142247	6142378	6142247	ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1
chr5_4	CDS	6141850	6141990	6141850	ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1
chr5_4	three_prime_UTR	6141450	6141849	6141450	ID=Msa0832970-mRNA-1:three_prime_utr;Parent=Msa0832970-mRNA-1

Gene Sequence

>Msa0832970

ATGCAAGAACCAAGCTTAGGGATGATGCACGGTGGTTACGGTGGAGATGGTGGCGGTGAGAACAGACAACTGAAGGCGGAGATAGCAACACATCCTTTGTATGAACAGCTTCTGTCTGCACATGTAGCATGTCTTCGTGTTGCTACTCCTATAGATCAGTTACCATTGATTGATGCTCAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCTCATGATCGTCAACAACTCGATAACTTCCTCGCACAATATTTGATAGTTTTGTGTACATTCAAAGAACAACTTCAGCAACATGTCAGAGTTCATGCTGTTGAAGCTGTTATGGCTTGCCGTGATATTGAAAATACCTTACAAGCCCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCGGATGATGAAGATGAACAATTGCAGATGGATTATGGTCTAGATAATCAGTCAAGTGGTGGTGGTGATCATGACATGATGGGACTTGGTCCATTACTTCCTACGGAATCTGAGAGGTCACTCATGGAAAGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCAAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGAAAATTACCGGGTGACACAACTTCAGTCTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGACGACAAAGCAAAACTTGTGGAGGAGACAGGACTGCAGCTGAAGCAAATCAATAATTGGTTCATTAATCAAAGGAAAAGAAACTGGCACAGTAATTCTCAATCGGTCACCTCTTTGAAGTCGAAACGCAAGAGGTAG

Protein sequence

>Msa0832970

MQEPSLGMMHGGYGGDGGGENRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQMDYGLDNQSSGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR*