Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832970 | XP_039690416.1 | 98.288 | 292 | 1 | 2 | 1 | 288 | 1 | 292 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832970 | sp|Q9FPQ8|KNAT7_ARATH | 79.181 | 293 | 52 | 4 | 1 | 287 | 1 | 290 | 2.35e-168 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832970 | G7KES2 | 98.288 | 292 | 1 | 2 | 1 | 288 | 1 | 292 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0832970 | TF | HB-KNOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa0832970 | -0.800714 | 1.266153e-48 | -8.615850e-47 |
| Msa0023840 | Msa0832970 | -0.803603 | 3.222410e-49 | -8.615850e-47 |
| Msa0029850 | Msa0832970 | 0.844895 | 5.694128e-59 | -8.615850e-47 |
| Msa0039330 | Msa0832970 | 0.861585 | 9.249991e-64 | -8.615850e-47 |
| Msa0050380 | Msa0832970 | 0.835673 | 1.463335e-56 | -8.615850e-47 |
| Msa0065890 | Msa0832970 | 0.834562 | 2.789134e-56 | -8.615850e-47 |
| Msa0077180 | Msa0832970 | 0.829973 | 3.814283e-55 | -8.615850e-47 |
| Msa0090100 | Msa0832970 | 0.802209 | 6.254009e-49 | -8.615850e-47 |
| Msa0102120 | Msa0832970 | 0.849149 | 3.892186e-60 | -8.615850e-47 |
| Msa0612930 | Msa0832970 | 0.801394 | 9.193257e-49 | -8.615850e-47 |
| Msa0613460 | Msa0832970 | 0.806842 | 6.757462e-50 | -8.615850e-47 |
| Msa0621750 | Msa0832970 | -0.825041 | 5.818882e-54 | -8.615850e-47 |
| Msa0623070 | Msa0832970 | 0.805590 | 1.240111e-49 | -8.615850e-47 |
| Msa0626090 | Msa0832970 | 0.800638 | 1.312288e-48 | -8.615850e-47 |
| Msa0647830 | Msa0832970 | 0.808671 | 2.761312e-50 | -8.615850e-47 |
| Msa0653660 | Msa0832970 | 0.804366 | 2.235661e-49 | -8.615850e-47 |
| Msa0654010 | Msa0832970 | 0.802279 | 6.048209e-49 | -8.615850e-47 |
| Msa0658570 | Msa0832970 | 0.826929 | 2.070709e-54 | -8.615850e-47 |
| Msa0672690 | Msa0832970 | 0.833696 | 4.598222e-56 | -8.615850e-47 |
| Msa0683950 | Msa0832970 | -0.803118 | 4.061410e-49 | -8.615850e-47 |
| Msa0688070 | Msa0832970 | 0.808519 | 2.975709e-50 | -8.615850e-47 |
| Msa0690440 | Msa0832970 | 0.824259 | 8.894738e-54 | -8.615850e-47 |
| Msa0698930 | Msa0832970 | 0.825459 | 4.632930e-54 | -8.615850e-47 |
| Msa0704920 | Msa0832970 | 0.821767 | 3.389194e-53 | -8.615850e-47 |
| Msa0716530 | Msa0832970 | 0.804417 | 2.182394e-49 | -8.615850e-47 |
| Msa0731180 | Msa0832970 | 0.803241 | 3.829323e-49 | -8.615850e-47 |
| Msa0753720 | Msa0832970 | 0.804940 | 1.697340e-49 | -8.615850e-47 |
| Msa0766630 | Msa0832970 | 0.805276 | 1.443711e-49 | -8.615850e-47 |
| Msa0788070 | Msa0832970 | -0.801773 | 7.686359e-49 | -8.615850e-47 |
| Msa0798860 | Msa0832970 | 0.810365 | 1.195192e-50 | -8.615850e-47 |
| Msa0807030 | Msa0832970 | 0.979643 | 2.017921e-148 | -8.615850e-47 |
| Msa0831850 | Msa0832970 | 0.824253 | 8.921287e-54 | -8.615850e-47 |
| Msa0832970 | Msa0925870 | 0.803710 | 3.061180e-49 | -8.615850e-47 |
| Msa0832970 | Msa0931520 | 0.831236 | 1.871401e-55 | -8.615850e-47 |
| Msa0832970 | Msa0946280 | -0.803209 | 3.887346e-49 | -8.615850e-47 |
| Msa0832970 | Msa0982270 | 0.821354 | 4.221096e-53 | -8.615850e-47 |
| Msa0832970 | Msa1006850 | 0.805938 | 1.048280e-49 | -8.615850e-47 |
| Msa0832970 | Msa1030970 | 0.813836 | 2.092244e-51 | -8.615850e-47 |
| Msa0832970 | Msa1039710 | -0.809951 | 1.467622e-50 | -8.615850e-47 |
| Msa0832970 | Msa1041600 | -0.819000 | 1.461273e-52 | -8.615850e-47 |
| Msa0832970 | Msa1068200 | -0.810505 | 1.114950e-50 | -8.615850e-47 |
| Msa0832970 | Msa1075080 | -0.838827 | 2.281827e-57 | -8.615850e-47 |
| Msa0832970 | Msa1075220 | -0.819837 | 9.417397e-53 | -8.615850e-47 |
| Msa0832970 | Msa1082500 | 0.807287 | 5.440768e-50 | -8.615850e-47 |
| Msa0832970 | Msa1089040 | 0.803076 | 4.142603e-49 | -8.615850e-47 |
| Msa0832970 | Msa1090260 | 0.828052 | 1.113887e-54 | -8.615850e-47 |
| Msa0832970 | Msa1100480 | 0.839599 | 1.439398e-57 | -8.615850e-47 |
| Msa0832970 | Msa1124540 | -0.850728 | 1.407329e-60 | -8.615850e-47 |
| Msa0832970 | Msa1132970 | 0.879800 | 9.271912e-70 | -8.615850e-47 |
| Msa0832970 | Msa1139000 | -0.814769 | 1.301174e-51 | -8.615850e-47 |
| Msa0832970 | Msa1143270 | 0.816254 | 6.078829e-52 | -8.615850e-47 |
| Msa0832970 | Msa1144720 | -0.814640 | 1.390173e-51 | -8.615850e-47 |
| Msa0832970 | Msa1154280 | 0.800009 | 1.762207e-48 | -8.615850e-47 |
| Msa0832970 | Msa1156340 | -0.807020 | 6.197966e-50 | -8.615850e-47 |
| Msa0832970 | Msa1162550 | -0.823827 | 1.123248e-53 | -8.615850e-47 |
| Msa0832970 | Msa1166500 | -0.819843 | 9.386236e-53 | -8.615850e-47 |
| Msa0832970 | Msa1186950 | -0.810180 | 1.310299e-50 | -8.615850e-47 |
| Msa0832970 | Msa1224480 | 0.809962 | 1.459854e-50 | -8.615850e-47 |
| Msa0832970 | Msa1243100 | 0.807230 | 5.593935e-50 | -8.615850e-47 |
| Msa0832970 | Msa1246500 | 0.815066 | 1.118282e-51 | -8.615850e-47 |
| Msa0832970 | Msa1267060 | 0.811396 | 7.149687e-51 | -8.615850e-47 |
| Msa0832970 | Msa1279210 | 0.812863 | 3.423176e-51 | -8.615850e-47 |
| Msa0832970 | Msa1287430 | 0.807125 | 5.888849e-50 | -8.615850e-47 |
| Msa0832970 | Msa1287480 | 0.807046 | 6.120110e-50 | -8.615850e-47 |
| Msa0832970 | Msa1305190 | 0.805927 | 1.053828e-49 | -8.615850e-47 |
| Msa0832970 | Msa1305200 | 0.836711 | 7.972945e-57 | -8.615850e-47 |
| Msa0832970 | Msa1305350 | 0.844095 | 9.345128e-59 | -8.615850e-47 |
| Msa0832970 | Msa1307740 | 0.811412 | 7.093410e-51 | -8.615850e-47 |
| Msa0832970 | Msa1311340 | 0.808956 | 2.400571e-50 | -8.615850e-47 |
| Msa0832970 | Msa1322890 | 0.810964 | 8.871659e-51 | -8.615850e-47 |
| Msa0832970 | Msa1331000 | 0.810842 | 9.424965e-51 | -8.615850e-47 |
| Msa0832970 | Msa1335710 | 0.807218 | 5.628408e-50 | -8.615850e-47 |
| Msa0832970 | Msa1368500 | 0.800183 | 1.623944e-48 | -8.615850e-47 |
| Msa0832970 | Msa1376890 | 0.827739 | 1.324440e-54 | -8.615850e-47 |
| Msa0832970 | Msa1377570 | 0.803000 | 4.294354e-49 | -8.615850e-47 |
| Msa0832970 | Msa1385020 | 0.800230 | 1.588645e-48 | -8.615850e-47 |
| Msa0832970 | Msa1393410 | 0.815001 | 1.156351e-51 | -8.615850e-47 |
| Msa0832970 | Msa1401530 | 0.805143 | 1.538716e-49 | -8.615850e-47 |
| Msa0832970 | Msa1404240 | -0.805868 | 1.084605e-49 | -8.615850e-47 |
| Msa0832970 | Msa1427230 | 0.800385 | 1.477521e-48 | -8.615850e-47 |
| Msa0832970 | Msa1435420 | 0.811953 | 5.409484e-51 | -8.615850e-47 |
| Msa0832970 | Msa1440940 | 0.800658 | 1.299544e-48 | -8.615850e-47 |
| Msa0832970 | Msa1451620 | -0.847018 | 1.507903e-59 | -8.615850e-47 |
| Msa0832970 | Msa1458550 | 0.825616 | 4.254629e-54 | -8.615850e-47 |
| Msa0832970 | Msa1461810 | -0.823819 | 1.128221e-53 | -8.615850e-47 |
| Msa0124550 | Msa0832970 | 0.813825 | 2.103991e-51 | -8.615850e-47 |
| Msa0125050 | Msa0832970 | 0.814524 | 1.474912e-51 | -8.615850e-47 |
| Msa0169820 | Msa0832970 | 0.845738 | 3.368437e-59 | -8.615850e-47 |
| Msa0178930 | Msa0832970 | 0.803779 | 2.962163e-49 | -8.615850e-47 |
| Msa0183010 | Msa0832970 | -0.805670 | 1.193094e-49 | -8.615850e-47 |
| Msa0199800 | Msa0832970 | -0.811157 | 8.055139e-51 | -8.615850e-47 |
| Msa0230640 | Msa0832970 | -0.823292 | 1.498679e-53 | -8.615850e-47 |
| Msa0376590 | Msa0832970 | 0.824963 | 6.072272e-54 | -8.615850e-47 |
| Msa0379640 | Msa0832970 | 0.843740 | 1.163450e-58 | -8.615850e-47 |
| Msa0389810 | Msa0832970 | 0.820364 | 7.131025e-53 | -8.615850e-47 |
| Msa0409200 | Msa0832970 | 0.803631 | 3.178512e-49 | -8.615850e-47 |
| Msa0412840 | Msa0832970 | 0.807708 | 4.430478e-50 | -8.615850e-47 |
| Msa0433410 | Msa0832970 | -0.831930 | 1.262826e-55 | -8.615850e-47 |
| Msa0458440 | Msa0832970 | 0.815673 | 8.194543e-52 | -8.615850e-47 |
| Msa0468130 | Msa0832970 | 0.808065 | 3.718921e-50 | -8.615850e-47 |
| Msa0469940 | Msa0832970 | -0.822365 | 2.462857e-53 | -8.615850e-47 |
| Msa0475490 | Msa0832970 | 0.808538 | 2.948204e-50 | -8.615850e-47 |
| Msa0477130 | Msa0832970 | -0.814786 | 1.290349e-51 | -8.615850e-47 |
| Msa0265380 | Msa0832970 | 0.805586 | 1.242755e-49 | -8.615850e-47 |
| Msa0278900 | Msa0832970 | 0.800500 | 1.400052e-48 | -8.615850e-47 |
| Msa0288100 | Msa0832970 | 0.822389 | 2.431138e-53 | -8.615850e-47 |
| Msa0315290 | Msa0832970 | 0.813249 | 2.816911e-51 | -8.615850e-47 |
| Msa0326520 | Msa0832970 | 0.803513 | 3.363202e-49 | -8.615850e-47 |
| Msa0344690 | Msa0832970 | -0.839726 | 1.333962e-57 | -8.615850e-47 |
| Msa0344870 | Msa0832970 | 0.803672 | 3.117893e-49 | -8.615850e-47 |
| Msa0350320 | Msa0832970 | -0.811741 | 6.015596e-51 | -8.615850e-47 |
| Msa0484780 | Msa0832970 | 0.803851 | 2.861102e-49 | -8.615850e-47 |
| Msa0516370 | Msa0832970 | 0.806806 | 6.879147e-50 | -8.615850e-47 |
| Msa0516440 | Msa0832970 | 0.803303 | 3.718133e-49 | -8.615850e-47 |
| Msa0518380 | Msa0832970 | 0.829367 | 5.357543e-55 | -8.615850e-47 |
| Msa0548090 | Msa0832970 | -0.800689 | 1.281224e-48 | -8.615850e-47 |
| Msa0553460 | Msa0832970 | 0.802368 | 5.800710e-49 | -8.615850e-47 |
| Msa0558690 | Msa0832970 | 0.809455 | 1.876389e-50 | -8.615850e-47 |
| Msa0580000 | Msa0832970 | 0.817463 | 3.255522e-52 | -8.615850e-47 |
| Msa0585230 | Msa0832970 | 0.829208 | 5.854389e-55 | -8.615850e-47 |
| Msa0598160 | Msa0832970 | 0.809338 | 1.988000e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832970 | MtrunA17_Chr5g0398181 | 98.288 | 292 | 1 | 2 | 1 | 288 | 1 | 292 | 0.0 | 584 |
| Msa0832970 | MtrunA17_Chr1g0149651 | 70.036 | 277 | 79 | 2 | 15 | 288 | 161 | 436 | 1.87e-137 | 395 |
| Msa0832970 | MtrunA17_Chr3g0137241 | 69.057 | 265 | 81 | 1 | 25 | 288 | 107 | 371 | 1.99e-133 | 382 |
| Msa0832970 | MtrunA17_Chr2g0305101 | 68.679 | 265 | 80 | 2 | 23 | 287 | 93 | 354 | 9.04e-131 | 375 |
| Msa0832970 | MtrunA17_Chr4g0065241 | 65.693 | 274 | 91 | 1 | 2 | 275 | 48 | 318 | 1.77e-129 | 371 |
| Msa0832970 | MtrunA17_Chr1g0192791 | 34.375 | 256 | 138 | 5 | 21 | 272 | 16 | 245 | 1.02e-32 | 121 |
| Msa0832970 | MtrunA17_Chr1g0151961 | 32.806 | 253 | 145 | 6 | 20 | 272 | 115 | 342 | 6.60e-30 | 116 |
| Msa0832970 | MtrunA17_Chr5g0413201 | 34.387 | 253 | 132 | 6 | 24 | 272 | 72 | 294 | 7.88e-29 | 112 |
| Msa0832970 | MtrunA17_Chr5g0439391 | 30.364 | 247 | 139 | 4 | 27 | 272 | 49 | 263 | 8.22e-24 | 98.2 |
| Msa0832970 | MtrunA17_Chr2g0289201 | 29.317 | 249 | 148 | 4 | 24 | 272 | 117 | 337 | 1.19e-23 | 99.0 |
| Msa0832970 | MtrunA17_Chr7g0240371 | 37.349 | 83 | 50 | 1 | 204 | 286 | 298 | 378 | 3.41e-11 | 63.5 |
| Msa0832970 | MtrunA17_Chr4g0028701 | 37.805 | 82 | 49 | 1 | 204 | 285 | 463 | 542 | 9.46e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832970 | AT1G62990.1 | 79.181 | 293 | 52 | 4 | 1 | 287 | 1 | 290 | 2.38e-169 | 471 |
| Msa0832970 | AT5G25220.2 | 66.330 | 297 | 79 | 5 | 7 | 288 | 129 | 419 | 1.75e-135 | 390 |
| Msa0832970 | AT5G25220.1 | 66.216 | 296 | 79 | 5 | 7 | 287 | 129 | 418 | 1.11e-134 | 388 |
| Msa0832970 | AT5G11060.1 | 68.401 | 269 | 79 | 2 | 20 | 287 | 119 | 382 | 1.80e-132 | 381 |
| Msa0832970 | AT4G32040.2 | 61.592 | 289 | 94 | 6 | 12 | 288 | 96 | 379 | 1.26e-117 | 343 |
| Msa0832970 | AT4G32040.1 | 61.592 | 289 | 94 | 6 | 12 | 288 | 96 | 379 | 2.37e-117 | 342 |
| Msa0832970 | AT1G70510.1 | 33.597 | 253 | 132 | 5 | 24 | 272 | 69 | 289 | 2.92e-33 | 124 |
| Msa0832970 | AT1G70510.2 | 32.411 | 253 | 139 | 4 | 24 | 272 | 69 | 293 | 3.36e-32 | 121 |
| Msa0832970 | AT1G23380.1 | 34.800 | 250 | 133 | 6 | 24 | 272 | 85 | 305 | 3.37e-32 | 121 |
| Msa0832970 | AT1G23380.2 | 34.524 | 252 | 133 | 7 | 24 | 272 | 85 | 307 | 2.60e-30 | 116 |
| Msa0832970 | AT4G08150.1 | 30.588 | 255 | 143 | 7 | 24 | 272 | 134 | 360 | 1.99e-27 | 110 |
| Msa0832970 | AT1G62360.1 | 29.317 | 249 | 150 | 4 | 24 | 272 | 121 | 343 | 2.16e-22 | 95.9 |
Find 86 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGTTGCTGTATATTTC+TGG | 0.161598 | 5_4:-6141606 | Msa0832970:three_prime_UTR |
| TGTTCTCTGTTGTTATTATT+AGG | 0.236036 | 5_4:-6141559 | Msa0832970:three_prime_UTR |
| TAGATATTATTATGGTTAAT+TGG | 0.244390 | 5_4:-6141668 | Msa0832970:three_prime_UTR |
| GTGGAATAGTATTATATTAT+AGG | 0.247300 | 5_4:+6145963 | None:intergenic |
| TGGAATAGTATTATATTATA+GGG | 0.285356 | 5_4:+6145964 | None:intergenic |
| ATTTATTTCAGGAGTGAGTT+TGG | 0.300536 | 5_4:-6142668 | Msa0832970:intron |
| AGTCAAGAATTGAAGATGTA+AGG | 0.320951 | 5_4:-6142349 | Msa0832970:CDS |
| TCATGCTGTTGAAGCTGTTA+TGG | 0.321045 | 5_4:-6145052 | Msa0832970:CDS |
| GAACAATTGCAGATGGATTA+TGG | 0.322505 | 5_4:-6142607 | Msa0832970:CDS |
| AATAATAGTAGATATTATTA+TGG | 0.322689 | 5_4:-6141676 | Msa0832970:three_prime_UTR |
| AGCTGAAGCAAATCAATAAT+TGG | 0.323659 | 5_4:-6141928 | Msa0832970:CDS |
| AAGTTGGTAGTATTAATTAA+AGG | 0.332442 | 5_4:+6145776 | None:intergenic |
| ATGTAAGGGAGGAAATATTA+AGG | 0.375793 | 5_4:-6142334 | Msa0832970:CDS |
| TTTATTTCAGGAGTGAGTTT+GGG | 0.389051 | 5_4:-6142667 | Msa0832970:intron |
| TGTGTTACCAGCTGGTAATT+AGG | 0.392076 | 5_4:+6141792 | None:intergenic |
| TCTACTATTATTATATCTCT+TGG | 0.413043 | 5_4:+6141687 | None:intergenic |
| AAGAAGAGCTGGAAAATTAC+CGG | 0.413561 | 5_4:-6142309 | Msa0832970:CDS |
| TTAATCAAAGGAAAAGAAAC+TGG | 0.420427 | 5_4:-6141901 | Msa0832970:CDS |
| GATTGATGTATTGTTATTAT+CGG | 0.424127 | 5_4:+6145923 | None:intergenic |
| ATCAATGGTAACTGATCTAT+AGG | 0.425631 | 5_4:+6145593 | None:intergenic |
| GGGATGATGCACGGTGGTTA+CGG | 0.430293 | 5_4:-6145722 | Msa0832970:CDS |
| TATACCTGTGAGGGCTTGTA+AGG | 0.438851 | 5_4:+6145008 | None:intergenic |
| CAACTTCAGTCTTAAAGAAC+TGG | 0.439479 | 5_4:-6142280 | Msa0832970:CDS |
| ACTCAAAATTGAGCTCAAAC+AGG | 0.454282 | 5_4:-6142479 | Msa0832970:intron |
| TATCTCTTGGTGCATCTCAC+TGG | 0.459765 | 5_4:+6141700 | None:intergenic |
| GTCAAGAATTGAAGATGTAA+GGG | 0.466928 | 5_4:-6142348 | Msa0832970:CDS |
| GTGAGTTTGGGAGAAGGAAG+TGG | 0.468312 | 5_4:-6142655 | Msa0832970:CDS |
| TTAGGTGTGGTAAGGTTGGT+TGG | 0.468370 | 5_4:-6141541 | Msa0832970:three_prime_UTR |
| TCAGGAGTGAGTTTGGGAGA+AGG | 0.470466 | 5_4:-6142661 | Msa0832970:intron |
| GAAATGCAAGAACCAAGCTT+AGG | 0.481189 | 5_4:-6145743 | Msa0832970:CDS |
| CTCTTGGTGCATCTCACTGG+TGG | 0.481516 | 5_4:+6141703 | None:intergenic |
| ATTATTAGGTGTGGTAAGGT+TGG | 0.483160 | 5_4:-6141545 | Msa0832970:three_prime_UTR |
| TCTGTTGTTATTATTAGGTG+TGG | 0.498684 | 5_4:-6141554 | Msa0832970:three_prime_UTR |
| CACGGTGGTTACGGTGGAGA+TGG | 0.501187 | 5_4:-6145713 | Msa0832970:CDS |
| GGTGTGTTGTGTTGTGTTTG+TGG | 0.501391 | 5_4:+6145944 | None:intergenic |
| GCAAAACTTGTGGAGGAGAC+AGG | 0.501622 | 5_4:-6141956 | Msa0832970:CDS |
| TGTTATTATTAGGTGTGGTA+AGG | 0.510425 | 5_4:-6141549 | Msa0832970:three_prime_UTR |
| GATAACTGAGCATCAATCAA+TGG | 0.510534 | 5_4:+6145578 | None:intergenic |
| AAATGCAAGAACCAAGCTTA+GGG | 0.512228 | 5_4:-6145742 | Msa0832970:CDS |
| ACATAGTAATATTCCTTCAC+CGG | 0.512624 | 5_4:+6141465 | None:intergenic |
| ATCTTTGTTTCTATCAGAAG+TGG | 0.513108 | 5_4:-6146009 | Msa0832970:five_prime_UTR |
| TCTTGGTGCATCTCACTGGT+GGG | 0.521682 | 5_4:+6141704 | None:intergenic |
| TCAGATTCCGTAGGAAGTAA+TGG | 0.522855 | 5_4:+6142532 | None:intergenic |
| CTTGCGTTTCGACTTCAAAG+AGG | 0.527244 | 5_4:+6141856 | None:intergenic |
| AATTAACATACAGTTGGGTA+AGG | 0.529902 | 5_4:+6142236 | None:intergenic |
| AGTGATGGATGGGGTTGAAG+AGG | 0.537701 | 5_4:+6145806 | None:intergenic |
| CTGGCACAGTAATTCTCAAT+CGG | 0.541137 | 5_4:-6141882 | Msa0832970:CDS |
| GATAATCAGTCAAGTGGTGG+TGG | 0.544388 | 5_4:-6142580 | Msa0832970:CDS |
| GATCATGACATGATGGGACT+TGG | 0.548603 | 5_4:-6142556 | Msa0832970:CDS |
| ATATTAAGGAAAAGAAGAGC+TGG | 0.550111 | 5_4:-6142320 | Msa0832970:CDS |
| ATAATTGGTTCATTAATCAA+AGG | 0.552236 | 5_4:-6141913 | Msa0832970:CDS |
| ACTTGGTCCATTACTTCCTA+CGG | 0.552428 | 5_4:-6142539 | Msa0832970:CDS |
| TATAGTTGTGTGTTACCAGC+TGG | 0.555681 | 5_4:+6141784 | None:intergenic |
| GGTGGTTACGGTGGAGATGG+TGG | 0.568036 | 5_4:-6145710 | Msa0832970:CDS |
| TGGTGGTGATCATGACATGA+TGG | 0.573965 | 5_4:-6142563 | Msa0832970:CDS |
| GGAATCTGAGAGGTCACTCA+TGG | 0.575291 | 5_4:-6142518 | Msa0832970:CDS |
| AAGAATTGAAGATGTAAGGG+AGG | 0.579355 | 5_4:-6142345 | Msa0832970:CDS |
| AGGAAGTGGTGCGACAATGT+CGG | 0.581478 | 5_4:-6142641 | Msa0832970:CDS |
| TTTACATGCGCAGAGAAAGA+GGG | 0.587066 | 5_4:+6146032 | None:intergenic |
| CGGTGAGAACAGACAACTGA+AGG | 0.590615 | 5_4:-6145687 | Msa0832970:CDS |
| CATAGTAATATTCCTTCACC+GGG | 0.593829 | 5_4:+6141466 | None:intergenic |
| AAGACTGAAGTTGTGTCACC+CGG | 0.596174 | 5_4:+6142290 | None:intergenic |
| CCGTGCATCATCCCTAAGCT+TGG | 0.606516 | 5_4:+6145731 | None:intergenic |
| TGAAGATGAACAATTGCAGA+TGG | 0.612178 | 5_4:-6142614 | Msa0832970:CDS |
| TCGAGTTGTTGACGATCATG+AGG | 0.612238 | 5_4:+6145500 | None:intergenic |
| AATACCTTACAAGCCCTCAC+AGG | 0.617490 | 5_4:-6145012 | Msa0832970:intron |
| GGTTACGGTGGAGATGGTGG+CGG | 0.617848 | 5_4:-6145707 | Msa0832970:CDS |
| TCATATACTACTTTCTAGAG+TGG | 0.619276 | 5_4:-6145853 | Msa0832970:intron |
| CAGTGTACATATACCTGTGA+GGG | 0.621411 | 5_4:+6144999 | None:intergenic |
| CTTTGAAGTCGAAACGCAAG+AGG | 0.621918 | 5_4:-6141853 | Msa0832970:CDS |
| CGACAAAGCAAAACTTGTGG+AGG | 0.626840 | 5_4:-6141963 | Msa0832970:CDS |
| AGAAGAGCTGGAAAATTACC+GGG | 0.627133 | 5_4:-6142308 | Msa0832970:CDS |
| CTTCAGTCTTAAAGAACTGG+TGG | 0.629856 | 5_4:-6142277 | Msa0832970:CDS |
| GACAGAAGCTGTTCATACAA+AGG | 0.633295 | 5_4:+6145647 | None:intergenic |
| GGTCTAGATAATCAGTCAAG+TGG | 0.641451 | 5_4:-6142586 | Msa0832970:CDS |
| GGTGGTGATCATGACATGAT+GGG | 0.646696 | 5_4:-6142562 | Msa0832970:CDS |
| ATGATGCACGGTGGTTACGG+TGG | 0.647600 | 5_4:-6145719 | Msa0832970:CDS |
| CTAGATAATCAGTCAAGTGG+TGG | 0.656919 | 5_4:-6142583 | Msa0832970:CDS |
| AGTGACCTCTCAGATTCCGT+AGG | 0.660085 | 5_4:+6142523 | None:intergenic |
| TGAGAACAGACAACTGAAGG+CGG | 0.661001 | 5_4:-6145684 | Msa0832970:CDS |
| GGTGGCAGCAACATGCAAAG+TGG | 0.673948 | 5_4:-6142259 | Msa0832970:CDS |
| AGACGACAAAGCAAAACTTG+TGG | 0.675867 | 5_4:-6141966 | Msa0832970:CDS |
| TACTTCCTACGGAATCTGAG+AGG | 0.681932 | 5_4:-6142528 | Msa0832970:CDS |
| GCAGTGTACATATACCTGTG+AGG | 0.695254 | 5_4:+6144998 | None:intergenic |
| CCAAGCTTAGGGATGATGCA+CGG | 0.704488 | 5_4:-6145731 | Msa0832970:CDS |
| AGCTTAGGGATGATGCACGG+TGG | 0.759363 | 5_4:-6145728 | Msa0832970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTAATTTTTTATTA+TGG | - | chr5_4:6142704-6142723 | Msa0832970:intron | 0.0% |
| !! | ATTAATTAATTAATGTAATC+CGG | - | chr5_4:6143063-6143082 | Msa0832970:intron | 10.0% |
| !! | AATAATAGTAGATATTATTA+TGG | - | chr5_4:6145878-6145897 | Msa0832970:intron | 10.0% |
| !! | TGGAATAGTATTATATTATA+GGG | + | chr5_4:6141593-6141612 | None:intergenic | 15.0% |
| !! | ATTTAACAAATCAATTAAAG+TGG | + | chr5_4:6142360-6142379 | None:intergenic | 15.0% |
| !! | GATTTATCAAACAATAAAAT+GGG | + | chr5_4:6144439-6144458 | None:intergenic | 15.0% |
| !! | TGATTTATCAAACAATAAAA+TGG | + | chr5_4:6144440-6144459 | None:intergenic | 15.0% |
| !! | CATTAGAAATAATTATACAT+GGG | + | chr5_4:6144482-6144501 | None:intergenic | 15.0% |
| !! | TCATTAGAAATAATTATACA+TGG | + | chr5_4:6144483-6144502 | None:intergenic | 15.0% |
| !! | TAGATATTATTATGGTTAAT+TGG | - | chr5_4:6145886-6145905 | Msa0832970:intron | 15.0% |
| !! | GTGGAATAGTATTATATTAT+AGG | + | chr5_4:6141594-6141613 | None:intergenic | 20.0% |
| !!! | GATTGATGTATTGTTATTAT+CGG | + | chr5_4:6141634-6141653 | None:intergenic | 20.0% |
| !!! | AAGTTGGTAGTATTAATTAA+AGG | + | chr5_4:6141781-6141800 | None:intergenic | 20.0% |
| !! | ATGTATTTATTTGATCTTAC+CGG | - | chr5_4:6142132-6142151 | Msa0832970:intron | 20.0% |
| !!! | AACTAATTTGTCATATATGT+TGG | - | chr5_4:6142404-6142423 | Msa0832970:intron | 20.0% |
| !! | ATAAGTTATGAAAAAACTTG+TGG | - | chr5_4:6142660-6142679 | Msa0832970:CDS | 20.0% |
| !!! | TTTACTTGCACTTATTTTAT+TGG | - | chr5_4:6142792-6142811 | Msa0832970:intron | 20.0% |
| !!! | TTGTTTTCTATGTTCATTTT+AGG | - | chr5_4:6142827-6142846 | Msa0832970:intron | 20.0% |
| !! | TCACTATATTAATCTCTTAT+AGG | - | chr5_4:6142881-6142900 | Msa0832970:intron | 20.0% |
| !! | ATATTAATCTCTTATAGGTT+AGG | - | chr5_4:6142886-6142905 | Msa0832970:intron | 20.0% |
| !!! | TATTCTTCTAAAGCTATTTT+TGG | - | chr5_4:6142986-6143005 | Msa0832970:intron | 20.0% |
| !! | GTATACACAAATTAATTAGT+TGG | - | chr5_4:6143091-6143110 | Msa0832970:intron | 20.0% |
| !! | AACAAGATTATAATAGTTGT+TGG | + | chr5_4:6143200-6143219 | None:intergenic | 20.0% |
| !! | CAACTATTATAATCTTGTTA+TGG | - | chr5_4:6143201-6143220 | Msa0832970:intron | 20.0% |
| !!! | ATTATAATCTTGTTATGGAA+AGG | - | chr5_4:6143206-6143225 | Msa0832970:intron | 20.0% |
| !!! | AGGAAAATTCTGAAATTAAT+AGG | + | chr5_4:6143295-6143314 | None:intergenic | 20.0% |
| !!! | CTTTTTAAAAAAAGTTGTGT+TGG | - | chr5_4:6143596-6143615 | Msa0832970:intron | 20.0% |
| !! | AAGAACTTGTAAATAACTTT+AGG | + | chr5_4:6143636-6143655 | None:intergenic | 20.0% |
| !! | ATATTTGCATAGAACAATTA+AGG | - | chr5_4:6143689-6143708 | Msa0832970:intron | 20.0% |
| !! | ACAATCTAAAAGATGTATTT+AGG | + | chr5_4:6143824-6143843 | None:intergenic | 20.0% |
| !!! | AAATACATCTTTTAGATTGT+CGG | - | chr5_4:6143824-6143843 | Msa0832970:intron | 20.0% |
| !! | AAAGTAAAAAAACACTAAAC+TGG | - | chr5_4:6143951-6143970 | Msa0832970:intron | 20.0% |
| !! | TTCCAAGATATAATTTCTTT+GGG | - | chr5_4:6144007-6144026 | Msa0832970:intron | 20.0% |
| !! | TTTGATTAATTATGATGTAC+TGG | - | chr5_4:6144063-6144082 | Msa0832970:intron | 20.0% |
| !!! | TAATTCAAAAAACATTGACT+AGG | + | chr5_4:6144181-6144200 | None:intergenic | 20.0% |
| !! | TACATCTTAATCATACATAA+AGG | + | chr5_4:6144276-6144295 | None:intergenic | 20.0% |
| !! | GTTATGATTAATTAGTTACA+AGG | + | chr5_4:6144554-6144573 | None:intergenic | 20.0% |
| !! | ACTTATTTGAAGATTGTTTA+AGG | + | chr5_4:6144579-6144598 | None:intergenic | 20.0% |
| !! | TTACATGGAATAAATATACA+TGG | - | chr5_4:6144628-6144647 | Msa0832970:intron | 20.0% |
| !!! | ATTTCAGTTCAATTTTGTTT+AGG | - | chr5_4:6144727-6144746 | Msa0832970:intron | 20.0% |
| !!! | CAAATTTTGACATCAAATTA+TGG | + | chr5_4:6144808-6144827 | None:intergenic | 20.0% |
| !! | TTTGATGTCAAAATTTGATA+TGG | - | chr5_4:6144811-6144830 | Msa0832970:intron | 20.0% |
| !!! | TGTAGTATTGAATTTATTTC+AGG | - | chr5_4:6144875-6144894 | Msa0832970:intron | 20.0% |
| !! | GCATAATCTCATTTATTAAT+TGG | + | chr5_4:6145166-6145185 | None:intergenic | 20.0% |
| !!! | AGATTATGCATTAATTTGTA+GGG | - | chr5_4:6145177-6145196 | Msa0832970:intron | 20.0% |
| !! | AAGTTAATTAACATACAGTT+GGG | + | chr5_4:6145326-6145345 | None:intergenic | 20.0% |
| !! | AAAGTTAATTAACATACAGT+TGG | + | chr5_4:6145327-6145346 | None:intergenic | 20.0% |
| !!! | ATAATTGGTTCATTAATCAA+AGG | - | chr5_4:6145641-6145660 | Msa0832970:CDS | 20.0% |
| !! | TCTACTATTATTATATCTCT+TGG | + | chr5_4:6145870-6145889 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCAAAAAAGAGC+TGG | - | chr5_4:6145931-6145950 | Msa0832970:five_prime_UTR | 20.0% |
| ! | ATTAAAGGAGAAAAAAGTGA+TGG | + | chr5_4:6141766-6141785 | None:intergenic | 25.0% |
| ! | CATTTCTCAAGAAAAAAAGT+TGG | + | chr5_4:6141797-6141816 | None:intergenic | 25.0% |
| !!! | ACTTCCAAAACTCATTTTTT+TGG | - | chr5_4:6142241-6142260 | Msa0832970:intron | 25.0% |
| !!! | TTTTTGGTGTGATTAATTTG+AGG | - | chr5_4:6142257-6142276 | Msa0832970:CDS | 25.0% |
| !! | TAATTTGTCATATATGTTGG+TGG | - | chr5_4:6142407-6142426 | Msa0832970:intron | 25.0% |
| !!! | GTAAGGTATTTTCAATATCA+CGG | + | chr5_4:6142532-6142551 | None:intergenic | 25.0% |
| !!! | TTATGAACTTTAAAGTGGTA+CGG | + | chr5_4:6142600-6142619 | None:intergenic | 25.0% |
| !! | GAACTTTATGAACTTTAAAG+TGG | + | chr5_4:6142605-6142624 | None:intergenic | 25.0% |
| !! | TAATTTGTGTATACTCTTTC+CGG | + | chr5_4:6143085-6143104 | None:intergenic | 25.0% |
| ! | AAGATTATAATAGTTGTTGG+CGG | + | chr5_4:6143197-6143216 | None:intergenic | 25.0% |
| ! | GCTAATTTAAATAAGCTGAT+TGG | + | chr5_4:6143246-6143265 | None:intergenic | 25.0% |
| !! | TTTCAGAATTTTCCTACATA+TGG | - | chr5_4:6143300-6143319 | Msa0832970:intron | 25.0% |
| ! | ATAGACTAATTCTTCTAATC+GGG | + | chr5_4:6143349-6143368 | None:intergenic | 25.0% |
| ! | CATAGACTAATTCTTCTAAT+CGG | + | chr5_4:6143350-6143369 | None:intergenic | 25.0% |
| ! | TAATAATAACAGGAGACATT+TGG | - | chr5_4:6143405-6143424 | Msa0832970:intron | 25.0% |
| ! | AAAGATAATCCCAATATGTT+AGG | - | chr5_4:6143476-6143495 | Msa0832970:intron | 25.0% |
| !! | ATATATACCCTTTTACTGTT+AGG | - | chr5_4:6143544-6143563 | Msa0832970:intron | 25.0% |
| ! | CTTCCAAGATATAATTTCTT+TGG | - | chr5_4:6144006-6144025 | Msa0832970:intron | 25.0% |
| ! | TCCAAGATATAATTTCTTTG+GGG | - | chr5_4:6144008-6144027 | Msa0832970:intron | 25.0% |
| ! | CTTAATCATACATAAAGGAA+AGG | + | chr5_4:6144271-6144290 | None:intergenic | 25.0% |
| ! | TGATTAATTAGTTACAAGGA+CGG | + | chr5_4:6144550-6144569 | None:intergenic | 25.0% |
| !!! | AATTTCCCTTAGTTTTGTTT+CGG | - | chr5_4:6144780-6144799 | Msa0832970:intron | 25.0% |
| !!! | GAGATTATGCATTAATTTGT+AGG | - | chr5_4:6145176-6145195 | Msa0832970:intron | 25.0% |
| ! | AACTAATCTGGTTAATATCA+CGG | - | chr5_4:6145554-6145573 | Msa0832970:CDS | 25.0% |
| ! | TTAATCAAAGGAAAAGAAAC+TGG | - | chr5_4:6145653-6145672 | Msa0832970:CDS | 25.0% |
| !! | TGTTCTCTGTTGTTATTATT+AGG | - | chr5_4:6145995-6146014 | Msa0832970:five_prime_UTR | 25.0% |
| !! | ATCTTTGTTTCTATCAGAAG+TGG | - | chr5_4:6141545-6141564 | Msa0832970:three_prime_UTR | 30.0% |
| ! | TCATATACTACTTTCTAGAG+TGG | - | chr5_4:6141701-6141720 | Msa0832970:three_prime_UTR | 30.0% |
| ATCAATGGTAACTGATCTAT+AGG | + | chr5_4:6141964-6141983 | None:intergenic | 30.0% | |
| ! | CACACCAAAAAAATGAGTTT+TGG | + | chr5_4:6142248-6142267 | None:intergenic | 30.0% |
| TTGAGGCTTAGTAAAATTCA+TGG | - | chr5_4:6142274-6142293 | Msa0832970:CDS | 30.0% | |
| TAGTAAAATTCATGGCTTTC+TGG | - | chr5_4:6142282-6142301 | Msa0832970:CDS | 30.0% | |
| ACTGTTTATCCAAACAACTT+CGG | - | chr5_4:6142757-6142776 | Msa0832970:intron | 30.0% | |
| ATTATAACACCGAAGTTGTT+TGG | + | chr5_4:6142769-6142788 | None:intergenic | 30.0% | |
| !!! | TCTTCTAAAGCTATTTTTGG+TGG | - | chr5_4:6142989-6143008 | Msa0832970:intron | 30.0% |
| !!! | AAGCTATTTTTGGTGGATTT+TGG | - | chr5_4:6142996-6143015 | Msa0832970:intron | 30.0% |
| CAAACTAAACTCTTCCAAAT+TGG | + | chr5_4:6143128-6143147 | None:intergenic | 30.0% | |
| CAATTTGGAAGAGTTTAGTT+TGG | - | chr5_4:6143126-6143145 | Msa0832970:intron | 30.0% | |
| !!! | AGCTTACAGTTTTGATTTTG+TGG | - | chr5_4:6143517-6143536 | Msa0832970:intron | 30.0% |
| ! | TGTACACTAGTACGATTTTA+AGG | + | chr5_4:6143663-6143682 | None:intergenic | 30.0% |
| !! | TAGCTGGAGTATGTTTTTAA+GGG | - | chr5_4:6143762-6143781 | Msa0832970:intron | 30.0% |
| CGGTGAATTTAACATAATCA+CGG | - | chr5_4:6143844-6143863 | Msa0832970:intron | 30.0% | |
| TTCTCATAGTACGAAAAGAA+TGG | + | chr5_4:6143914-6143933 | None:intergenic | 30.0% | |
| TAATTTGAAGACGTCCAAAA+GGG | + | chr5_4:6144132-6144151 | None:intergenic | 30.0% | |
| ATAATTTGAAGACGTCCAAA+AGG | + | chr5_4:6144133-6144152 | None:intergenic | 30.0% | |
| CCAACTGAAATAATTAGTGA+AGG | + | chr5_4:6144158-6144177 | None:intergenic | 30.0% | |
| CCTTCACTAATTATTTCAGT+TGG | - | chr5_4:6144155-6144174 | Msa0832970:intron | 30.0% | |
| TCTAATGAGAAATTGCAAAG+TGG | - | chr5_4:6144495-6144514 | Msa0832970:intron | 30.0% | |
| CAGTTACACTCATATTTACA+TGG | - | chr5_4:6144613-6144632 | Msa0832970:intron | 30.0% | |
| ATAATATGCTTGCATGCATA+TGG | + | chr5_4:6144705-6144724 | None:intergenic | 30.0% | |
| ATTTATTTCAGGAGTGAGTT+TGG | - | chr5_4:6144886-6144905 | Msa0832970:intron | 30.0% | |
| TTTATTTCAGGAGTGAGTTT+GGG | - | chr5_4:6144887-6144906 | Msa0832970:intron | 30.0% | |
| AGTCAAGAATTGAAGATGTA+AGG | - | chr5_4:6145205-6145224 | Msa0832970:intron | 30.0% | |
| GTCAAGAATTGAAGATGTAA+GGG | - | chr5_4:6145206-6145225 | Msa0832970:intron | 30.0% | |
| ATGTAAGGGAGGAAATATTA+AGG | - | chr5_4:6145220-6145239 | Msa0832970:intron | 30.0% | |
| ATATTAAGGAAAAGAAGAGC+TGG | - | chr5_4:6145234-6145253 | Msa0832970:intron | 30.0% | |
| AATTAACATACAGTTGGGTA+AGG | + | chr5_4:6145321-6145340 | None:intergenic | 30.0% | |
| ! | AATTTTATCTTCTCCGAAAC+TGG | + | chr5_4:6145403-6145422 | None:intergenic | 30.0% |
| ATTCTTTGTAAATCAGTGTC+GGG | + | chr5_4:6145455-6145474 | None:intergenic | 30.0% | |
| GATTCTTTGTAAATCAGTGT+CGG | + | chr5_4:6145456-6145475 | None:intergenic | 30.0% | |
| GAATGAATCTTGTGTGTATT+TGG | + | chr5_4:6145478-6145497 | None:intergenic | 30.0% | |
| AGCTGAAGCAAATCAATAAT+TGG | - | chr5_4:6145626-6145645 | Msa0832970:CDS | 30.0% | |
| ! | TCTGTTGTTATTATTAGGTG+TGG | - | chr5_4:6146000-6146019 | Msa0832970:five_prime_UTR | 30.0% |
| TGTTATTATTAGGTGTGGTA+AGG | - | chr5_4:6146005-6146024 | Msa0832970:five_prime_UTR | 30.0% | |
| ACATAGTAATATTCCTTCAC+CGG | + | chr5_4:6146092-6146111 | None:intergenic | 30.0% | |
| AAGCAAAGAAAAGCAGTATC+TGG | + | chr5_4:6141656-6141675 | None:intergenic | 35.0% | |
| AAAAAACAGAGTTGAGGTAG+AGG | + | chr5_4:6141728-6141747 | None:intergenic | 35.0% | |
| AAGAGGAAAAAACAGAGTTG+AGG | + | chr5_4:6141734-6141753 | None:intergenic | 35.0% | |
| !! | AGGAGAAAAAAGTGATGGAT+GGG | + | chr5_4:6141761-6141780 | None:intergenic | 35.0% |
| ! | AAGGAGAAAAAAGTGATGGA+TGG | + | chr5_4:6141762-6141781 | None:intergenic | 35.0% |
| AAATGCAAGAACCAAGCTTA+GGG | - | chr5_4:6141812-6141831 | Msa0832970:three_prime_UTR | 35.0% | |
| GATAACTGAGCATCAATCAA+TGG | + | chr5_4:6141979-6141998 | None:intergenic | 35.0% | |
| ATGTGTCAACAAAACTTGAC+CGG | + | chr5_4:6142154-6142173 | None:intergenic | 35.0% | |
| ! | CTTTATTTGTGCCAACAAAG+AGG | - | chr5_4:6142305-6142324 | Msa0832970:CDS | 35.0% |
| TCCATCAAAATCCTCTTTGT+TGG | + | chr5_4:6142319-6142338 | None:intergenic | 35.0% | |
| !! | ACAAAGAGGATTTTGATGGA+TGG | - | chr5_4:6142319-6142338 | Msa0832970:CDS | 35.0% |
| !! | CAAAGAGGATTTTGATGGAT+GGG | - | chr5_4:6142320-6142339 | Msa0832970:CDS | 35.0% |
| !! | CATATATGTTGGTGGTTGTT+TGG | - | chr5_4:6142415-6142434 | Msa0832970:intron | 35.0% |
| ! | GTTAGGCATATGTTGTTGTT+TGG | - | chr5_4:6142903-6142922 | Msa0832970:intron | 35.0% |
| !! | GCATATGTTGTTGTTTGGTT+TGG | - | chr5_4:6142908-6142927 | Msa0832970:intron | 35.0% |
| !! | TATGTTGTTGTTTGGTTTGG+TGG | - | chr5_4:6142911-6142930 | Msa0832970:intron | 35.0% |
| !! | ATGTTGTTGTTTGGTTTGGT+GGG | - | chr5_4:6142912-6142931 | Msa0832970:intron | 35.0% |
| TTTGGCTAATCTGAAGAAAG+TGG | - | chr5_4:6143014-6143033 | Msa0832970:intron | 35.0% | |
| TTGGCTAATCTGAAGAAAGT+GGG | - | chr5_4:6143015-6143034 | Msa0832970:intron | 35.0% | |
| TGGTTACATAGCAACCAATT+TGG | - | chr5_4:6143111-6143130 | Msa0832970:intron | 35.0% | |
| !! | TGGAAGAGTTTAGTTTGGTA+AGG | - | chr5_4:6143131-6143150 | Msa0832970:intron | 35.0% |
| AGTGTTCTACTTCCATATGT+AGG | + | chr5_4:6143315-6143334 | None:intergenic | 35.0% | |
| ACTAATTCTTCTAATCGGGT+AGG | + | chr5_4:6143345-6143364 | None:intergenic | 35.0% | |
| AATAACAGGAGACATTTGGA+AGG | - | chr5_4:6143409-6143428 | Msa0832970:intron | 35.0% | |
| ATAACAGGAGACATTTGGAA+GGG | - | chr5_4:6143410-6143429 | Msa0832970:intron | 35.0% | |
| GCACACAAACAATAGATATC+AGG | + | chr5_4:6143448-6143467 | None:intergenic | 35.0% | |
| TATCTATTGTTTGTGTGCTG+TGG | - | chr5_4:6143450-6143469 | Msa0832970:intron | 35.0% | |
| GACAGAAAGCCTAACATATT+GGG | + | chr5_4:6143488-6143507 | None:intergenic | 35.0% | |
| TGACAGAAAGCCTAACATAT+TGG | + | chr5_4:6143489-6143508 | None:intergenic | 35.0% | |
| CTAGTAGCCTAACAGTAAAA+GGG | + | chr5_4:6143554-6143573 | None:intergenic | 35.0% | |
| ! | CTTTTACTGTTAGGCTACTA+GGG | - | chr5_4:6143553-6143572 | Msa0832970:intron | 35.0% |
| ! | TTTTACTGTTAGGCTACTAG+GGG | - | chr5_4:6143554-6143573 | Msa0832970:intron | 35.0% |
| TAAGGAATCAAGCATTACCT+TGG | - | chr5_4:6143707-6143726 | Msa0832970:intron | 35.0% | |
| AAGCATTACCTTGGTTGAAT+AGG | - | chr5_4:6143716-6143735 | Msa0832970:intron | 35.0% | |
| AGCATTACCTTGGTTGAATA+GGG | - | chr5_4:6143717-6143736 | Msa0832970:intron | 35.0% | |
| CTTAAAAACATACTCCAGCT+AGG | + | chr5_4:6143763-6143782 | None:intergenic | 35.0% | |
| !! | CTAGCTGGAGTATGTTTTTA+AGG | - | chr5_4:6143761-6143780 | Msa0832970:intron | 35.0% |
| TTCGTACTATGAGAAATGCT+AGG | - | chr5_4:6143919-6143938 | Msa0832970:intron | 35.0% | |
| !! | GAAGTTGATGCTATAAGGAA+TGG | + | chr5_4:6143990-6144009 | None:intergenic | 35.0% |
| !! | TCTTGGAAGTTGATGCTATA+AGG | + | chr5_4:6143995-6144014 | None:intergenic | 35.0% |
| GCCCCAAAGAAATTATATCT+TGG | + | chr5_4:6144012-6144031 | None:intergenic | 35.0% | |
| ! | TTATGATGTACTGGTATCCA+TGG | - | chr5_4:6144072-6144091 | Msa0832970:intron | 35.0% |
| GTATCCATGGCTATTTAAGT+AGG | - | chr5_4:6144085-6144104 | Msa0832970:intron | 35.0% | |
| TCATCCTACTTAAATAGCCA+TGG | + | chr5_4:6144092-6144111 | None:intergenic | 35.0% | |
| ATGTCCATCATTGATGTTGT+TGG | - | chr5_4:6144230-6144249 | Msa0832970:intron | 35.0% | |
| TATCCACATCCACTAACATA+AGG | - | chr5_4:6144335-6144354 | Msa0832970:intron | 35.0% | |
| ATCCACATCCACTAACATAA+GGG | - | chr5_4:6144336-6144355 | Msa0832970:intron | 35.0% | |
| GAGAGCAATGTAGTTACATA+AGG | + | chr5_4:6144365-6144384 | None:intergenic | 35.0% | |
| ! | TCATTTGGAAGTTTGAGACA+TGG | + | chr5_4:6144389-6144408 | None:intergenic | 35.0% |
| ! | GACATGAACAGCTTTTCATT+TGG | + | chr5_4:6144404-6144423 | None:intergenic | 35.0% |
| AATGAAAAGCTGTTCATGTC+TGG | - | chr5_4:6144404-6144423 | Msa0832970:intron | 35.0% | |
| TGGAACCGAAACAAAACTAA+GGG | + | chr5_4:6144788-6144807 | None:intergenic | 35.0% | |
| ATGGAACCGAAACAAAACTA+AGG | + | chr5_4:6144789-6144808 | None:intergenic | 35.0% | |
| TGAAGATGAACAATTGCAGA+TGG | - | chr5_4:6144940-6144959 | Msa0832970:intron | 35.0% | |
| !! | GAACAATTGCAGATGGATTA+TGG | - | chr5_4:6144947-6144966 | Msa0832970:intron | 35.0% |
| ACTCAAAATTGAGCTCAAAC+AGG | - | chr5_4:6145075-6145094 | Msa0832970:CDS | 35.0% | |
| AAGAATTGAAGATGTAAGGG+AGG | - | chr5_4:6145209-6145228 | Msa0832970:intron | 35.0% | |
| AAGAAGAGCTGGAAAATTAC+CGG | - | chr5_4:6145245-6145264 | Msa0832970:intron | 35.0% | |
| CAACTTCAGTCTTAAAGAAC+TGG | - | chr5_4:6145274-6145293 | Msa0832970:intron | 35.0% | |
| AGAAATTACATGCAGAAGGA+AGG | + | chr5_4:6145350-6145369 | None:intergenic | 35.0% | |
| GATCAGAAATTACATGCAGA+AGG | + | chr5_4:6145354-6145373 | None:intergenic | 35.0% | |
| ! | CGTATGTTTAGTTCCAGTTT+CGG | - | chr5_4:6145387-6145406 | Msa0832970:intron | 35.0% |
| ! | TTTTGTTCCTAATTACCAGC+TGG | - | chr5_4:6145755-6145774 | Msa0832970:exon | 35.0% |
| ATTATTAGGTGTGGTAAGGT+TGG | - | chr5_4:6146009-6146028 | Msa0832970:five_prime_UTR | 35.0% | |
| CATAGTAATATTCCTTCACC+GGG | + | chr5_4:6146091-6146110 | None:intergenic | 35.0% | |
| TTTACATGCGCAGAGAAAGA+GGG | + | chr5_4:6141525-6141544 | None:intergenic | 40.0% | |
| ! | TTTTACATGCGCAGAGAAAG+AGG | + | chr5_4:6141526-6141545 | None:intergenic | 40.0% |
| !! | GGAGAAAAAAGTGATGGATG+GGG | + | chr5_4:6141760-6141779 | None:intergenic | 40.0% |
| GAAATGCAAGAACCAAGCTT+AGG | - | chr5_4:6141811-6141830 | Msa0832970:three_prime_UTR | 40.0% | |
| GACAGAAGCTGTTCATACAA+AGG | + | chr5_4:6141910-6141929 | None:intergenic | 40.0% | |
| ! | GCCAACAAAGAGGATTTTGA+TGG | - | chr5_4:6142315-6142334 | Msa0832970:CDS | 40.0% |
| TCATGCTGTTGAAGCTGTTA+TGG | - | chr5_4:6142502-6142521 | Msa0832970:CDS | 40.0% | |
| CAGTGTACATATACCTGTGA+GGG | + | chr5_4:6142558-6142577 | None:intergenic | 40.0% | |
| !! | AACTTTAAAGTGGTACGGAG+GGG | + | chr5_4:6142595-6142614 | None:intergenic | 40.0% |
| !! | GAACTTTAAAGTGGTACGGA+GGG | + | chr5_4:6142596-6142615 | None:intergenic | 40.0% |
| !! | TGAACTTTAAAGTGGTACGG+AGG | + | chr5_4:6142597-6142616 | None:intergenic | 40.0% |
| !! | GGTTTGGTGGGTTAGATATT+TGG | - | chr5_4:6142924-6142943 | Msa0832970:intron | 40.0% |
| TGGCTAATCTGAAGAAAGTG+GGG | - | chr5_4:6143016-6143035 | Msa0832970:intron | 40.0% | |
| GGTTTCATATCATGGTTGGA+GGG | + | chr5_4:6143176-6143195 | None:intergenic | 40.0% | |
| TTGTTGGCGGTTTCATATCA+TGG | + | chr5_4:6143184-6143203 | None:intergenic | 40.0% | |
| CCTAGTAGCCTAACAGTAAA+AGG | + | chr5_4:6143555-6143574 | None:intergenic | 40.0% | |
| ! | CCTTTTACTGTTAGGCTACT+AGG | - | chr5_4:6143552-6143571 | Msa0832970:intron | 40.0% |
| TTACCTTGGTTGAATAGGGA+TGG | - | chr5_4:6143721-6143740 | Msa0832970:intron | 40.0% | |
| !! | AATTTCTTTGGGGCAATGCT+AGG | - | chr5_4:6144018-6144037 | Msa0832970:intron | 40.0% |
| ! | CGACATTTAACTGTCCCTTT+TGG | - | chr5_4:6144115-6144134 | Msa0832970:intron | 40.0% |
| GTTGCCAACAACATCAATGA+TGG | + | chr5_4:6144237-6144256 | None:intergenic | 40.0% | |
| !! | GATGATGGGGTCTCTAAATT+GGG | + | chr5_4:6144312-6144331 | None:intergenic | 40.0% |
| !! | TGATGATGGGGTCTCTAAAT+TGG | + | chr5_4:6144313-6144332 | None:intergenic | 40.0% |
| ! | GATGTGGATACATGATGATG+GGG | + | chr5_4:6144325-6144344 | None:intergenic | 40.0% |
| GGATGTGGATACATGATGAT+GGG | + | chr5_4:6144326-6144345 | None:intergenic | 40.0% | |
| TGGATGTGGATACATGATGA+TGG | + | chr5_4:6144327-6144346 | None:intergenic | 40.0% | |
| TCCACATCCACTAACATAAG+GGG | - | chr5_4:6144337-6144356 | Msa0832970:intron | 40.0% | |
| TTGCAAAGTGGAGCTTCAAT+AGG | - | chr5_4:6144507-6144526 | Msa0832970:intron | 40.0% | |
| TGCAAAGTGGAGCTTCAATA+GGG | - | chr5_4:6144508-6144527 | Msa0832970:intron | 40.0% | |
| GGTCTAGATAATCAGTCAAG+TGG | - | chr5_4:6144968-6144987 | Msa0832970:intron | 40.0% | |
| CTAGATAATCAGTCAAGTGG+TGG | - | chr5_4:6144971-6144990 | Msa0832970:intron | 40.0% | |
| ACTTGGTCCATTACTTCCTA+CGG | - | chr5_4:6145015-6145034 | Msa0832970:CDS | 40.0% | |
| TCAGATTCCGTAGGAAGTAA+TGG | + | chr5_4:6145025-6145044 | None:intergenic | 40.0% | |
| AGAAGAGCTGGAAAATTACC+GGG | - | chr5_4:6145246-6145265 | Msa0832970:intron | 40.0% | |
| CTTCAGTCTTAAAGAACTGG+TGG | - | chr5_4:6145277-6145296 | Msa0832970:intron | 40.0% | |
| TCGGGCTCATTCAAAACTTT+AGG | + | chr5_4:6145437-6145456 | None:intergenic | 40.0% | |
| AAGCTTATTACGTGTGTCGT+TGG | + | chr5_4:6145526-6145545 | None:intergenic | 40.0% | |
| ! | GCTTGTGTCACTAACTAATC+TGG | - | chr5_4:6145542-6145561 | Msa0832970:CDS | 40.0% |
| GTTAATATCACGGTTTGTGC+AGG | - | chr5_4:6145564-6145583 | Msa0832970:CDS | 40.0% | |
| AGACGACAAAGCAAAACTTG+TGG | - | chr5_4:6145588-6145607 | Msa0832970:CDS | 40.0% | |
| CTGGCACAGTAATTCTCAAT+CGG | - | chr5_4:6145672-6145691 | Msa0832970:CDS | 40.0% | |
| TGTGTTACCAGCTGGTAATT+AGG | + | chr5_4:6145765-6145784 | None:intergenic | 40.0% | |
| TATAGTTGTGTGTTACCAGC+TGG | + | chr5_4:6145773-6145792 | None:intergenic | 40.0% | |
| AGCTGGTTGCTGTATATTTC+TGG | - | chr5_4:6145948-6145967 | Msa0832970:five_prime_UTR | 40.0% | |
| !! | GTTTGTTACGTTTTCTGACC+CGG | - | chr5_4:6146070-6146089 | Msa0832970:five_prime_UTR | 40.0% |
| GGTGTGTTGTGTTGTGTTTG+TGG | + | chr5_4:6141613-6141632 | None:intergenic | 45.0% | |
| TGAGAACAGACAACTGAAGG+CGG | - | chr5_4:6141870-6141889 | Msa0832970:CDS | 45.0% | |
| ! | TCGAGTTGTTGACGATCATG+AGG | + | chr5_4:6142057-6142076 | None:intergenic | 45.0% |
| GAGAGTGAGTATTACGTACG+AGG | + | chr5_4:6142086-6142105 | None:intergenic | 45.0% | |
| AATACCTTACAAGCCCTCAC+AGG | - | chr5_4:6142542-6142561 | Msa0832970:CDS | 45.0% | |
| TATACCTGTGAGGGCTTGTA+AGG | + | chr5_4:6142549-6142568 | None:intergenic | 45.0% | |
| GCAGTGTACATATACCTGTG+AGG | + | chr5_4:6142559-6142578 | None:intergenic | 45.0% | |
| !! | ACTTTAAAGTGGTACGGAGG+GGG | + | chr5_4:6142594-6142613 | None:intergenic | 45.0% |
| GGCTAATCTGAAGAAAGTGG+GGG | - | chr5_4:6143017-6143036 | Msa0832970:intron | 45.0% | |
| GCTAATCTGAAGAAAGTGGG+GGG | - | chr5_4:6143018-6143037 | Msa0832970:intron | 45.0% | |
| CTAATCTGAAGAAAGTGGGG+GGG | - | chr5_4:6143019-6143038 | Msa0832970:intron | 45.0% | |
| CGGTTTCATATCATGGTTGG+AGG | + | chr5_4:6143177-6143196 | None:intergenic | 45.0% | |
| TGGCGGTTTCATATCATGGT+TGG | + | chr5_4:6143180-6143199 | None:intergenic | 45.0% | |
| ! | AGACATTTGGAAGGGTTGGT+TGG | - | chr5_4:6143418-6143437 | Msa0832970:intron | 45.0% |
| !! | GACATTTGGAAGGGTTGGTT+GGG | - | chr5_4:6143419-6143438 | Msa0832970:intron | 45.0% |
| !!! | CAGCTGTGTTTTAACCTAGC+TGG | - | chr5_4:6143746-6143765 | Msa0832970:intron | 45.0% |
| CCACATCCACTAACATAAGG+GGG | - | chr5_4:6144338-6144357 | Msa0832970:intron | 45.0% | |
| TAAGGTCCCCCTTATGTTAG+TGG | + | chr5_4:6144347-6144366 | None:intergenic | 45.0% | |
| GATAATCAGTCAAGTGGTGG+TGG | - | chr5_4:6144974-6144993 | Msa0832970:intron | 45.0% | |
| ! | TGGTGGTGATCATGACATGA+TGG | - | chr5_4:6144991-6145010 | Msa0832970:intron | 45.0% |
| GGTGGTGATCATGACATGAT+GGG | - | chr5_4:6144992-6145011 | Msa0832970:intron | 45.0% | |
| ! | GATCATGACATGATGGGACT+TGG | - | chr5_4:6144998-6145017 | Msa0832970:intron | 45.0% |
| TACTTCCTACGGAATCTGAG+AGG | - | chr5_4:6145026-6145045 | Msa0832970:CDS | 45.0% | |
| AAGACTGAAGTTGTGTCACC+CGG | + | chr5_4:6145267-6145286 | None:intergenic | 45.0% | |
| CGACAAAGCAAAACTTGTGG+AGG | - | chr5_4:6145591-6145610 | Msa0832970:CDS | 45.0% | |
| CTTGCGTTTCGACTTCAAAG+AGG | + | chr5_4:6145701-6145720 | None:intergenic | 45.0% | |
| !! | CTTTGAAGTCGAAACGCAAG+AGG | - | chr5_4:6145701-6145720 | Msa0832970:CDS | 45.0% |
| ! | TATCTCTTGGTGCATCTCAC+TGG | + | chr5_4:6145857-6145876 | None:intergenic | 45.0% |
| ! | TTAGGTGTGGTAAGGTTGGT+TGG | - | chr5_4:6146013-6146032 | Msa0832970:five_prime_UTR | 45.0% |
| !!! | AATTAAACAAATATTTTATT+TGG | + | chr5_4:6142858-6142877 | None:intergenic | 5.0% |
| !! | CATTAATTAATTAATTAATT+AGG | + | chr5_4:6143058-6143077 | None:intergenic | 5.0% |
| !! | TTAAAAATAATAATAATAAC+AGG | - | chr5_4:6143395-6143414 | Msa0832970:intron | 5.0% |
| !! | AGTGATGGATGGGGTTGAAG+AGG | + | chr5_4:6141751-6141770 | None:intergenic | 50.0% |
| CCAAGCTTAGGGATGATGCA+CGG | - | chr5_4:6141823-6141842 | Msa0832970:three_prime_UTR | 50.0% | |
| CGGTGAGAACAGACAACTGA+AGG | - | chr5_4:6141867-6141886 | Msa0832970:CDS | 50.0% | |
| !! | TGTTGGTGGTTGTTTGGTGC+AGG | - | chr5_4:6142421-6142440 | Msa0832970:intron | 50.0% |
| CAGGAGACATTTGGAAGGGT+TGG | - | chr5_4:6143414-6143433 | Msa0832970:intron | 50.0% | |
| GCACCATCCCTATTCAACCA+AGG | + | chr5_4:6143727-6143746 | None:intergenic | 50.0% | |
| ! | CCCCCTTATGTTAGTGGATG+TGG | + | chr5_4:6144341-6144360 | None:intergenic | 50.0% |
| AGTGGAGCTTCAATAGGGAC+TGG | - | chr5_4:6144513-6144532 | Msa0832970:intron | 50.0% | |
| TCAGGAGTGAGTTTGGGAGA+AGG | - | chr5_4:6144893-6144912 | Msa0832970:intron | 50.0% | |
| GTGAGTTTGGGAGAAGGAAG+TGG | - | chr5_4:6144899-6144918 | Msa0832970:intron | 50.0% | |
| AGGAAGTGGTGCGACAATGT+CGG | - | chr5_4:6144913-6144932 | Msa0832970:intron | 50.0% | |
| AGTGACCTCTCAGATTCCGT+AGG | + | chr5_4:6145034-6145053 | None:intergenic | 50.0% | |
| GGAATCTGAGAGGTCACTCA+TGG | - | chr5_4:6145036-6145055 | Msa0832970:CDS | 50.0% | |
| GCAAAACTTGTGGAGGAGAC+AGG | - | chr5_4:6145598-6145617 | Msa0832970:CDS | 50.0% | |
| ! | TCTTGGTGCATCTCACTGGT+GGG | + | chr5_4:6145853-6145872 | None:intergenic | 50.0% |
| ! | TACGTTTTCTGACCCGGTGA+AGG | - | chr5_4:6146076-6146095 | Msa0832970:five_prime_UTR | 50.0% |
| CCGTGCATCATCCCTAAGCT+TGG | + | chr5_4:6141826-6141845 | None:intergenic | 55.0% | |
| AGCTTAGGGATGATGCACGG+TGG | - | chr5_4:6141826-6141845 | Msa0832970:three_prime_UTR | 55.0% | |
| GGGATGATGCACGGTGGTTA+CGG | - | chr5_4:6141832-6141851 | Msa0832970:exon | 55.0% | |
| ATGATGCACGGTGGTTACGG+TGG | - | chr5_4:6141835-6141854 | Msa0832970:exon | 55.0% | |
| GGTACGGAGGGGGAGATATA+TGG | + | chr5_4:6142584-6142603 | None:intergenic | 55.0% | |
| GGTGGCAGCAACATGCAAAG+TGG | - | chr5_4:6145295-6145314 | Msa0832970:intron | 55.0% | |
| ! | CTCTTGGTGCATCTCACTGG+TGG | + | chr5_4:6145854-6145873 | None:intergenic | 55.0% |
| CACGGTGGTTACGGTGGAGA+TGG | - | chr5_4:6141841-6141860 | Msa0832970:exon | 60.0% | |
| GGTGGTTACGGTGGAGATGG+TGG | - | chr5_4:6141844-6141863 | Msa0832970:exon | 60.0% | |
| ! | GGTTACGGTGGAGATGGTGG+CGG | - | chr5_4:6141847-6141866 | Msa0832970:exon | 60.0% |
| CTGAAGAAAGTGGGGGGGTG+TGG | - | chr5_4:6143024-6143043 | Msa0832970:intron | 60.0% | |
| ! | AGAAAGTGGGGGGGTGTGGT+AGG | - | chr5_4:6143028-6143047 | Msa0832970:intron | 60.0% |
| ! | GAAAGTGGGGGGGTGTGGTA+GGG | - | chr5_4:6143029-6143048 | Msa0832970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6141450 | 6146126 | 6141450 | ID=Msa0832970;Name=Msa0832970 |
| chr5_4 | mRNA | 6141450 | 6146126 | 6141450 | ID=Msa0832970-mRNA-1;Parent=Msa0832970;Name=Msa0832970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=316|1|1|1|0.8|0.66|6|400|288 |
| chr5_4 | exon | 6141450 | 6141990 | 6141450 | ID=Msa0832970-mRNA-1:exon:2649;Parent=Msa0832970-mRNA-1 |
| chr5_4 | exon | 6142247 | 6142378 | 6142247 | ID=Msa0832970-mRNA-1:exon:2648;Parent=Msa0832970-mRNA-1 |
| chr5_4 | exon | 6142480 | 6142679 | 6142480 | ID=Msa0832970-mRNA-1:exon:2647;Parent=Msa0832970-mRNA-1 |
| chr5_4 | exon | 6145013 | 6145133 | 6145013 | ID=Msa0832970-mRNA-1:exon:2646;Parent=Msa0832970-mRNA-1 |
| chr5_4 | exon | 6145490 | 6145871 | 6145490 | ID=Msa0832970-mRNA-1:exon:2645;Parent=Msa0832970-mRNA-1 |
| chr5_4 | exon | 6145920 | 6146126 | 6145920 | ID=Msa0832970-mRNA-1:exon:2644;Parent=Msa0832970-mRNA-1 |
| chr5_4 | five_prime_UTR | 6145920 | 6146126 | 6145920 | ID=Msa0832970-mRNA-1:five_prime_utr;Parent=Msa0832970-mRNA-1 |
| chr5_4 | five_prime_UTR | 6145763 | 6145871 | 6145763 | ID=Msa0832970-mRNA-1:five_prime_utr;Parent=Msa0832970-mRNA-1 |
| chr5_4 | CDS | 6145490 | 6145762 | 6145490 | ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1 |
| chr5_4 | CDS | 6145013 | 6145133 | 6145013 | ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1 |
| chr5_4 | CDS | 6142480 | 6142679 | 6142480 | ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1 |
| chr5_4 | CDS | 6142247 | 6142378 | 6142247 | ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1 |
| chr5_4 | CDS | 6141850 | 6141990 | 6141850 | ID=Msa0832970-mRNA-1:cds;Parent=Msa0832970-mRNA-1 |
| chr5_4 | three_prime_UTR | 6141450 | 6141849 | 6141450 | ID=Msa0832970-mRNA-1:three_prime_utr;Parent=Msa0832970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
