AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443390 MtrunA17_Chr3g0081741 99.301 143 1 0 1 143 1 143 1.52e-105 297
Msa0443390 MtrunA17_Chr8g0353881 88.811 143 16 0 1 143 1 143 1.29e-97 277
Msa0443390 MtrunA17_Chr3g0081771 83.333 84 12 1 60 143 10 91 5.74e-44 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443390 AT5G61170.1 83.099 142 24 0 1 142 1 142 1.35e-90 259
Msa0443390 AT3G02080.1 81.119 143 27 0 1 143 1 143 1.41e-90 259
Msa0443390 AT5G15520.1 83.453 139 23 0 1 139 1 139 9.55e-89 254

Find 68 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAAGCACAACTGAATT+AGG 0.152804 3_3:+14023314 None:intergenic
TGTGAAGACTGCAAGGTTTA+AGG 0.181111 3_3:-14022249 Msa0443390:CDS
ATTATCAAACATGGCCTAAA+TGG 0.227936 3_3:-14021203 Msa0443390:three_prime_UTR
TTGATCTGTAAACTGCTTCT+AGG 0.266746 3_3:-14021522 Msa0443390:exon
GGTGCATTCCAGAGGATTTA+TGG 0.279212 3_3:-14022011 Msa0443390:CDS
ACGCAAATGCGAGTTGTAAC+TGG 0.296757 3_3:+14021250 None:intergenic
GGATATGAAGCATGCCATTT+AGG 0.304171 3_3:+14021189 None:intergenic
GATCCAGATCCAATAGATAT+TGG 0.308683 3_3:-14023391 None:intergenic
CACAAAGCACAACTGAATTA+GGG 0.332745 3_3:+14023315 None:intergenic
TTCACAATATCTGTCCATTC+TGG 0.341460 3_3:+14022266 None:intergenic
AGGGATCTGGACCAAGTTGC+TGG 0.369673 3_3:-14021563 Msa0443390:CDS
CCTTGGTGTCCATCTCAATA+AGG 0.385015 3_3:+14021895 None:intergenic
TTCCAGTGGCAGGAGGGATC+TGG 0.397570 3_3:-14021576 Msa0443390:CDS
AAGAACACAAAACGATTGAT+AGG 0.404287 3_3:+14021292 None:intergenic
GACTGCAAGGTTTAAGGAGT+TGG 0.416477 3_3:-14022243 Msa0443390:CDS
GTCCAGATCCCTCCTGCCAC+TGG 0.420598 3_3:+14021574 None:intergenic
ATCCAGATCCAATAGATATT+GGG 0.423043 3_3:-14023390 None:intergenic
ACCCCTCAAGTAGATCTTCC+TGG 0.431786 3_3:+14022046 None:intergenic
GATCCAATAGATATTGGGTT+CGG 0.436809 3_3:-14023385 None:intergenic
ATCCAATAGATATTGGGTTC+GGG 0.448247 3_3:-14023384 None:intergenic
TAGAAGCAGTTTACAGATCA+AGG 0.452792 3_3:+14021524 None:intergenic
GACTTCCACCATAAATCCTC+TGG 0.453242 3_3:+14022003 None:intergenic
ATCTACTTGAGGGGTGGACT+CGG 0.454423 3_3:-14022038 Msa0443390:CDS
TCTGCTCATCTCAAAAGATC+TGG 0.481965 3_3:-14023183 Msa0443390:CDS
GTGCCGCAGCTTCCATGGCC+AGG 0.485644 3_3:-14022064 Msa0443390:intron
GCTCTGACGTAGTACCAGTC+AGG 0.489319 3_3:+14022209 None:intergenic
TTGTGCTTTGTGAGTAGAGA+GGG 0.492581 3_3:-14023304 Msa0443390:five_prime_UTR
TAGTACCAGTCAGGGTCATA+AGG 0.498306 3_3:+14022218 None:intergenic
TATGGTGGAAGTCAGAGAAA+TGG 0.514768 3_3:-14021993 Msa0443390:CDS
CAAGTAGATCTTCCTGGCCA+TGG 0.517027 3_3:+14022052 None:intergenic
GGCCAGGAAGATCTACTTGA+GGG 0.518439 3_3:-14022048 Msa0443390:CDS
TTGAGGGGTGGACTCGGTGT+TGG 0.522669 3_3:-14022032 Msa0443390:CDS
GGAAGATCACTTCCAGTGGC+AGG 0.522712 3_3:-14021586 Msa0443390:CDS
AACAGTCCTTGCGGTAGCCA+TGG 0.523894 3_3:+14023242 None:intergenic
CGCAAATGCGAGTTGTAACT+GGG 0.525463 3_3:+14021251 None:intergenic
CATTTGCATATTATCAAACA+TGG 0.531397 3_3:-14021212 Msa0443390:three_prime_UTR
AGCTCGAGCAAGCAAAGCAG+CGG 0.533461 3_3:-14023270 Msa0443390:five_prime_UTR
TAACAATACGTCCAGCAACT+TGG 0.533492 3_3:+14021552 None:intergenic
TGGCTCCTTATGACCCTGAC+TGG 0.535373 3_3:-14022223 Msa0443390:CDS
TCTGAAATGTGATGCTGTGA+GGG 0.536205 3_3:+14023340 None:intergenic
CCACTGCTCTTGCAGAAATG+AGG 0.542089 3_3:+14021960 None:intergenic
GACTGGTACTACGTCAGAGC+TGG 0.543992 3_3:-14022206 Msa0443390:intron
AACAGATGGAGCTTCCAGAA+TGG 0.551656 3_3:-14022280 Msa0443390:intron
TTGAAGAATGTGGCGAGCAA+TGG 0.555153 3_3:+14021935 None:intergenic
GAACATGAACCTTATTGAGA+TGG 0.561257 3_3:-14021904 Msa0443390:CDS
CTGAAATGTGATGCTGTGAG+GGG 0.578144 3_3:+14023341 None:intergenic
TTCTGAAATGTGATGCTGTG+AGG 0.587211 3_3:+14023339 None:intergenic
CCTCATTTCTGCAAGAGCAG+TGG 0.589477 3_3:-14021960 Msa0443390:CDS
TCGGTGTTGGTGCATTCCAG+AGG 0.603387 3_3:-14022019 Msa0443390:CDS
AGATCACTTCCAGTGGCAGG+AGG 0.615298 3_3:-14021583 Msa0443390:CDS
CAGATATTGTGAAGACTGCA+AGG 0.617924 3_3:-14022256 Msa0443390:CDS
CTGCTCTTGCAGAAATGAGG+TGG 0.621206 3_3:+14021963 None:intergenic
GTTGTGCTTTGTGAGTAGAG+AGG 0.621686 3_3:-14023305 Msa0443390:five_prime_UTR
AGGAAGATCTACTTGAGGGG+TGG 0.621735 3_3:-14022044 Msa0443390:CDS
GCAAAGCAGCGGCACAACCA+TGG 0.626448 3_3:-14023259 Msa0443390:exon
CTCTGACGTAGTACCAGTCA+GGG 0.627550 3_3:+14022210 None:intergenic
TCATCTCAAAAGATCTGGCA+AGG 0.635281 3_3:-14023178 Msa0443390:intron
GCACAACCATGGCTACCGCA+AGG 0.635383 3_3:-14023248 Msa0443390:exon
GATCACTTCCAGTGGCAGGA+GGG 0.646734 3_3:-14021582 Msa0443390:CDS
CTTATTGAGATGGACACCAA+GGG 0.649426 3_3:-14021894 Msa0443390:CDS
TGGCCAGGAAGATCTACTTG+AGG 0.650322 3_3:-14022049 Msa0443390:CDS
GGCAGGAAGATCACTTCCAG+TGG 0.650796 3_3:-14021590 Msa0443390:CDS
CCTTATTGAGATGGACACCA+AGG 0.671459 3_3:-14021895 Msa0443390:CDS
GCATTCCAGAGGATTTATGG+TGG 0.673361 3_3:-14022008 Msa0443390:CDS
AACATCTTGAACAGTCCTTG+CGG 0.675305 3_3:+14023233 None:intergenic
TCTGCAACTGTTGAAGAATG+TGG 0.679137 3_3:+14021925 None:intergenic
GCCAGGAAGATCTACTTGAG+GGG 0.686642 3_3:-14022047 Msa0443390:CDS
TTATTGAGATGGACACCAAG+GGG 0.704884 3_3:-14021893 Msa0443390:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTAATTTAAACAA+GGG + chr3_3:14022435-14022454 None:intergenic 10.0%
!!! TTTTTTTGTTAATTTAAACA+AGG + chr3_3:14022436-14022455 None:intergenic 10.0%
!!! TTTTTTGTTAATTTAAACAA+GGG + chr3_3:14022435-14022454 None:intergenic 10.0%
!!! TTTTTTTGTTAATTTAAACA+AGG + chr3_3:14022436-14022455 None:intergenic 10.0%
!!! AAAACCAAAATGAAATTTTT+CGG + chr3_3:14021439-14021458 None:intergenic 15.0%
!!! TTTTGATTTTTTTTTTGAAG+AGG - chr3_3:14021487-14021506 Msa0443390:three_prime_UTR 15.0%
!!! TTAATGTTATGTTTTATGTT+AGG - chr3_3:14021646-14021665 Msa0443390:intron 15.0%
!!! ATCAAAAACATTTTTTTGTT+AGG + chr3_3:14021742-14021761 None:intergenic 15.0%
!!! TTGTTTTTGTTAATCAAATT+AGG - chr3_3:14021943-14021962 Msa0443390:CDS 15.0%
!! TAATCTATGTAATTAGAATA+AGG + chr3_3:14022067-14022086 None:intergenic 15.0%
!!! AAAACCAAAATGAAATTTTT+CGG + chr3_3:14021439-14021458 None:intergenic 15.0%
!!! TTTTGATTTTTTTTTTGAAG+AGG - chr3_3:14021487-14021506 Msa0443390:three_prime_UTR 15.0%
!!! TTAATGTTATGTTTTATGTT+AGG - chr3_3:14021646-14021665 Msa0443390:intron 15.0%
!!! ATCAAAAACATTTTTTTGTT+AGG + chr3_3:14021742-14021761 None:intergenic 15.0%
!!! TTGTTTTTGTTAATCAAATT+AGG - chr3_3:14021943-14021962 Msa0443390:CDS 15.0%
!! TAATCTATGTAATTAGAATA+AGG + chr3_3:14022067-14022086 None:intergenic 15.0%
!!! ATTTGTTTTGATTTGCTTAA+CGG - chr3_3:14021511-14021530 Msa0443390:three_prime_UTR 20.0%
!!! TGTTTTTGATTTGATTTGAT+TGG - chr3_3:14021752-14021771 Msa0443390:intron 20.0%
!!! CAAATTTTGAAAGTTCAAAA+GGG + chr3_3:14022035-14022054 None:intergenic 20.0%
!!! ACAAATTTTGAAAGTTCAAA+AGG + chr3_3:14022036-14022055 None:intergenic 20.0%
!! TTCTAATTACATAGATTACT+TGG - chr3_3:14022069-14022088 Msa0443390:intron 20.0%
!! TCTAATTACATAGATTACTT+GGG - chr3_3:14022070-14022089 Msa0443390:intron 20.0%
!! TTATAATGATACGAATGAAA+TGG - chr3_3:14022200-14022219 Msa0443390:intron 20.0%
!! TAACAAAAAAATAACTTTCG+AGG - chr3_3:14022445-14022464 Msa0443390:intron 20.0%
!! AACAAAAAAATAACTTTCGA+GGG - chr3_3:14022446-14022465 Msa0443390:intron 20.0%
!!! TAACTATTTGATTTACATTG+CGG + chr3_3:14022799-14022818 None:intergenic 20.0%
!! TGTTAAAAACATGATATGAA+GGG + chr3_3:14022948-14022967 None:intergenic 20.0%
!! ATGTTAAAAACATGATATGA+AGG + chr3_3:14022949-14022968 None:intergenic 20.0%
!!! ATTTTATTCACTGGATTTTT+TGG - chr3_3:14023214-14023233 Msa0443390:CDS 20.0%
!!! TTGATAGGTATAATTTTGTA+AGG + chr3_3:14023275-14023294 None:intergenic 20.0%
!!! ATTTGTTTTGATTTGCTTAA+CGG - chr3_3:14021511-14021530 Msa0443390:three_prime_UTR 20.0%
!!! TGTTTTTGATTTGATTTGAT+TGG - chr3_3:14021752-14021771 Msa0443390:intron 20.0%
!!! CAAATTTTGAAAGTTCAAAA+GGG + chr3_3:14022035-14022054 None:intergenic 20.0%
!!! ACAAATTTTGAAAGTTCAAA+AGG + chr3_3:14022036-14022055 None:intergenic 20.0%
!! TTCTAATTACATAGATTACT+TGG - chr3_3:14022069-14022088 Msa0443390:intron 20.0%
!! TCTAATTACATAGATTACTT+GGG - chr3_3:14022070-14022089 Msa0443390:intron 20.0%
!! TTATAATGATACGAATGAAA+TGG - chr3_3:14022200-14022219 Msa0443390:intron 20.0%
!! TAACAAAAAAATAACTTTCG+AGG - chr3_3:14022445-14022464 Msa0443390:intron 20.0%
!! AACAAAAAAATAACTTTCGA+GGG - chr3_3:14022446-14022465 Msa0443390:intron 20.0%
!!! TAACTATTTGATTTACATTG+CGG + chr3_3:14022799-14022818 None:intergenic 20.0%
!! TGTTAAAAACATGATATGAA+GGG + chr3_3:14022948-14022967 None:intergenic 20.0%
!! ATGTTAAAAACATGATATGA+AGG + chr3_3:14022949-14022968 None:intergenic 20.0%
!!! ATTTTATTCACTGGATTTTT+TGG - chr3_3:14023214-14023233 Msa0443390:CDS 20.0%
!!! TTGATAGGTATAATTTTGTA+AGG + chr3_3:14023275-14023294 None:intergenic 20.0%
!! TTCACCGAAAAATTTCATTT+TGG - chr3_3:14021432-14021451 Msa0443390:three_prime_UTR 25.0%
!!! TTTGTTTTGATTTGCTTAAC+GGG - chr3_3:14021512-14021531 Msa0443390:three_prime_UTR 25.0%
!! TTGTCGAATTAATCTGTTTT+AGG - chr3_3:14021546-14021565 Msa0443390:CDS 25.0%
!! GTTATGTTTTATGTTAGGTT+TGG - chr3_3:14021651-14021670 Msa0443390:intron 25.0%
!!! GAACTTTCAAAATTTGTTGT+TGG - chr3_3:14022039-14022058 Msa0443390:CDS 25.0%
! TTGTACAGTTCAAATTTAGT+TGG - chr3_3:14022231-14022250 Msa0443390:CDS 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG - chr3_3:14022885-14022904 Msa0443390:intron 25.0%
! CATTTGCATATTATCAAACA+TGG - chr3_3:14023367-14023386 Msa0443390:five_prime_UTR 25.0%
!! TTCACCGAAAAATTTCATTT+TGG - chr3_3:14021432-14021451 Msa0443390:three_prime_UTR 25.0%
!!! TTTGTTTTGATTTGCTTAAC+GGG - chr3_3:14021512-14021531 Msa0443390:three_prime_UTR 25.0%
!! TTGTCGAATTAATCTGTTTT+AGG - chr3_3:14021546-14021565 Msa0443390:CDS 25.0%
!! GTTATGTTTTATGTTAGGTT+TGG - chr3_3:14021651-14021670 Msa0443390:intron 25.0%
!!! GAACTTTCAAAATTTGTTGT+TGG - chr3_3:14022039-14022058 Msa0443390:CDS 25.0%
! TTGTACAGTTCAAATTTAGT+TGG - chr3_3:14022231-14022250 Msa0443390:CDS 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG - chr3_3:14022885-14022904 Msa0443390:intron 25.0%
! CATTTGCATATTATCAAACA+TGG - chr3_3:14023367-14023386 Msa0443390:five_prime_UTR 25.0%
CATCTGTTCATAACAAAACA+AGG + chr3_3:14022287-14022306 None:intergenic 30.0%
!!! CTTGTTTTGTTATGAACAGA+TGG - chr3_3:14022285-14022304 Msa0443390:intron 30.0%
! ACATTGCAATTTTCAACAAC+AGG + chr3_3:14022488-14022507 None:intergenic 30.0%
TATGGTTTACAATAGGGAAT+AGG - chr3_3:14022737-14022756 Msa0443390:intron 30.0%
!!! TTGCTTTTTCTTTATCACAG+TGG - chr3_3:14022968-14022987 Msa0443390:intron 30.0%
! TCTTGTCACATTTTATTCAC+TGG - chr3_3:14023205-14023224 Msa0443390:CDS 30.0%
AAGAACACAAAACGATTGAT+AGG + chr3_3:14023290-14023309 None:intergenic 30.0%
ATTATCAAACATGGCCTAAA+TGG - chr3_3:14023376-14023395 Msa0443390:five_prime_UTR 30.0%
CATCTGTTCATAACAAAACA+AGG + chr3_3:14022287-14022306 None:intergenic 30.0%
!!! CTTGTTTTGTTATGAACAGA+TGG - chr3_3:14022285-14022304 Msa0443390:intron 30.0%
! ACATTGCAATTTTCAACAAC+AGG + chr3_3:14022488-14022507 None:intergenic 30.0%
TATGGTTTACAATAGGGAAT+AGG - chr3_3:14022737-14022756 Msa0443390:intron 30.0%
!!! TTGCTTTTTCTTTATCACAG+TGG - chr3_3:14022968-14022987 Msa0443390:intron 30.0%
! TCTTGTCACATTTTATTCAC+TGG - chr3_3:14023205-14023224 Msa0443390:CDS 30.0%
AAGAACACAAAACGATTGAT+AGG + chr3_3:14023290-14023309 None:intergenic 30.0%
ATTATCAAACATGGCCTAAA+TGG - chr3_3:14023376-14023395 Msa0443390:five_prime_UTR 30.0%
CACAAAGCACAACTGAATTA+GGG + chr3_3:14021267-14021286 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG + chr3_3:14021268-14021287 None:intergenic 35.0%
TTACATAGATTACTTGGGCA+TGG - chr3_3:14022075-14022094 Msa0443390:intron 35.0%
TTCACAATATCTGTCCATTC+TGG + chr3_3:14022316-14022335 None:intergenic 35.0%
!! GTTTGATTTTGTGCATTTCC+TGG - chr3_3:14022408-14022427 Msa0443390:intron 35.0%
GTTAATTTAAACAAGGGACC+AGG + chr3_3:14022429-14022448 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG - chr3_3:14022675-14022694 Msa0443390:intron 35.0%
! TTATCTTTGTTAGCCTGCTA+TGG - chr3_3:14022719-14022738 Msa0443390:intron 35.0%
AACTACTGCTCAACAAATGT+TGG + chr3_3:14022848-14022867 None:intergenic 35.0%
! TTTTTCTTTATCACAGTGGC+AGG - chr3_3:14022972-14022991 Msa0443390:intron 35.0%
TAGAAGCAGTTTACAGATCA+AGG + chr3_3:14023058-14023077 None:intergenic 35.0%
TTGATCTGTAAACTGCTTCT+AGG - chr3_3:14023057-14023076 Msa0443390:intron 35.0%
CACAAAGCACAACTGAATTA+GGG + chr3_3:14021267-14021286 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG + chr3_3:14021268-14021287 None:intergenic 35.0%
TTACATAGATTACTTGGGCA+TGG - chr3_3:14022075-14022094 Msa0443390:intron 35.0%
TTCACAATATCTGTCCATTC+TGG + chr3_3:14022316-14022335 None:intergenic 35.0%
!! GTTTGATTTTGTGCATTTCC+TGG - chr3_3:14022408-14022427 Msa0443390:intron 35.0%
GTTAATTTAAACAAGGGACC+AGG + chr3_3:14022429-14022448 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG - chr3_3:14022675-14022694 Msa0443390:intron 35.0%
! TTATCTTTGTTAGCCTGCTA+TGG - chr3_3:14022719-14022738 Msa0443390:intron 35.0%
AACTACTGCTCAACAAATGT+TGG + chr3_3:14022848-14022867 None:intergenic 35.0%
! TTTTTCTTTATCACAGTGGC+AGG - chr3_3:14022972-14022991 Msa0443390:intron 35.0%
TAGAAGCAGTTTACAGATCA+AGG + chr3_3:14023058-14023077 None:intergenic 35.0%
TTGATCTGTAAACTGCTTCT+AGG - chr3_3:14023057-14023076 Msa0443390:intron 35.0%
! TCTGAAATGTGATGCTGTGA+GGG + chr3_3:14021242-14021261 None:intergenic 40.0%
!! TTCTGAAATGTGATGCTGTG+AGG + chr3_3:14021243-14021262 None:intergenic 40.0%
TTGTGCTTTGTGAGTAGAGA+GGG - chr3_3:14021275-14021294 Msa0443390:three_prime_UTR 40.0%
AACATCTTGAACAGTCCTTG+CGG + chr3_3:14021349-14021368 None:intergenic 40.0%
TCTGCTCATCTCAAAAGATC+TGG - chr3_3:14021396-14021415 Msa0443390:three_prime_UTR 40.0%
TCATCTCAAAAGATCTGGCA+AGG - chr3_3:14021401-14021420 Msa0443390:three_prime_UTR 40.0%
GTATTCAAGCTCTACTTCAC+TGG - chr3_3:14022166-14022185 Msa0443390:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG - chr3_3:14022323-14022342 Msa0443390:intron 40.0%
TGTGAAGACTGCAAGGTTTA+AGG - chr3_3:14022330-14022349 Msa0443390:intron 40.0%
! TATGGTGGAAGTCAGAGAAA+TGG - chr3_3:14022586-14022605 Msa0443390:intron 40.0%
TCTGCAACTGTTGAAGAATG+TGG + chr3_3:14022657-14022676 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG - chr3_3:14022685-14022704 Msa0443390:intron 40.0%
TTATTGAGATGGACACCAAG+GGG - chr3_3:14022686-14022705 Msa0443390:intron 40.0%
GATAATGAGTTCTTACCCCT+TGG + chr3_3:14022704-14022723 None:intergenic 40.0%
AGCCTGCTATGGTTTACAAT+AGG - chr3_3:14022730-14022749 Msa0443390:intron 40.0%
GCCTGCTATGGTTTACAATA+GGG - chr3_3:14022731-14022750 Msa0443390:intron 40.0%
TCCCTATTGTAAACCATAGC+AGG + chr3_3:14022735-14022754 None:intergenic 40.0%
GCTCAACAAATGTTGGTATC+AGG + chr3_3:14022841-14022860 None:intergenic 40.0%
TAACAATACGTCCAGCAACT+TGG + chr3_3:14023030-14023049 None:intergenic 40.0%
! TCTGAAATGTGATGCTGTGA+GGG + chr3_3:14021242-14021261 None:intergenic 40.0%
!! TTCTGAAATGTGATGCTGTG+AGG + chr3_3:14021243-14021262 None:intergenic 40.0%
TTGTGCTTTGTGAGTAGAGA+GGG - chr3_3:14021275-14021294 Msa0443390:three_prime_UTR 40.0%
AACATCTTGAACAGTCCTTG+CGG + chr3_3:14021349-14021368 None:intergenic 40.0%
TCTGCTCATCTCAAAAGATC+TGG - chr3_3:14021396-14021415 Msa0443390:three_prime_UTR 40.0%
TCATCTCAAAAGATCTGGCA+AGG - chr3_3:14021401-14021420 Msa0443390:three_prime_UTR 40.0%
GTATTCAAGCTCTACTTCAC+TGG - chr3_3:14022166-14022185 Msa0443390:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG - chr3_3:14022323-14022342 Msa0443390:intron 40.0%
TGTGAAGACTGCAAGGTTTA+AGG - chr3_3:14022330-14022349 Msa0443390:intron 40.0%
! TATGGTGGAAGTCAGAGAAA+TGG - chr3_3:14022586-14022605 Msa0443390:intron 40.0%
TCTGCAACTGTTGAAGAATG+TGG + chr3_3:14022657-14022676 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG - chr3_3:14022685-14022704 Msa0443390:intron 40.0%
TTATTGAGATGGACACCAAG+GGG - chr3_3:14022686-14022705 Msa0443390:intron 40.0%
GATAATGAGTTCTTACCCCT+TGG + chr3_3:14022704-14022723 None:intergenic 40.0%
AGCCTGCTATGGTTTACAAT+AGG - chr3_3:14022730-14022749 Msa0443390:intron 40.0%
GCCTGCTATGGTTTACAATA+GGG - chr3_3:14022731-14022750 Msa0443390:intron 40.0%
TCCCTATTGTAAACCATAGC+AGG + chr3_3:14022735-14022754 None:intergenic 40.0%
GCTCAACAAATGTTGGTATC+AGG + chr3_3:14022841-14022860 None:intergenic 40.0%
TAACAATACGTCCAGCAACT+TGG + chr3_3:14023030-14023049 None:intergenic 40.0%
CTGAAATGTGATGCTGTGAG+GGG + chr3_3:14021241-14021260 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG - chr3_3:14021274-14021293 Msa0443390:three_prime_UTR 45.0%
CATGGTTTCATCTCACGTGT+TGG - chr3_3:14022093-14022112 Msa0443390:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG - chr3_3:14022299-14022318 Msa0443390:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG - chr3_3:14022336-14022355 Msa0443390:intron 45.0%
TAGTACCAGTCAGGGTCATA+AGG + chr3_3:14022364-14022383 None:intergenic 45.0%
GGTGCATTCCAGAGGATTTA+TGG - chr3_3:14022568-14022587 Msa0443390:intron 45.0%
GCATTCCAGAGGATTTATGG+TGG - chr3_3:14022571-14022590 Msa0443390:intron 45.0%
GACTTCCACCATAAATCCTC+TGG + chr3_3:14022579-14022598 None:intergenic 45.0%
TTGAAGAATGTGGCGAGCAA+TGG + chr3_3:14022647-14022666 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG + chr3_3:14022687-14022706 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG - chr3_3:14022684-14022703 Msa0443390:intron 45.0%
CGCAAATGCGAGTTGTAACT+GGG + chr3_3:14023331-14023350 None:intergenic 45.0%
ACGCAAATGCGAGTTGTAAC+TGG + chr3_3:14023332-14023351 None:intergenic 45.0%
CTGAAATGTGATGCTGTGAG+GGG + chr3_3:14021241-14021260 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG - chr3_3:14021274-14021293 Msa0443390:three_prime_UTR 45.0%
CATGGTTTCATCTCACGTGT+TGG - chr3_3:14022093-14022112 Msa0443390:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG - chr3_3:14022299-14022318 Msa0443390:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG - chr3_3:14022336-14022355 Msa0443390:intron 45.0%
TAGTACCAGTCAGGGTCATA+AGG + chr3_3:14022364-14022383 None:intergenic 45.0%
GGTGCATTCCAGAGGATTTA+TGG - chr3_3:14022568-14022587 Msa0443390:intron 45.0%
GCATTCCAGAGGATTTATGG+TGG - chr3_3:14022571-14022590 Msa0443390:intron 45.0%
GACTTCCACCATAAATCCTC+TGG + chr3_3:14022579-14022598 None:intergenic 45.0%
TTGAAGAATGTGGCGAGCAA+TGG + chr3_3:14022647-14022666 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG + chr3_3:14022687-14022706 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG - chr3_3:14022684-14022703 Msa0443390:intron 45.0%
CGCAAATGCGAGTTGTAACT+GGG + chr3_3:14023331-14023350 None:intergenic 45.0%
ACGCAAATGCGAGTTGTAAC+TGG + chr3_3:14023332-14023351 None:intergenic 45.0%
CTCTGACGTAGTACCAGTCA+GGG + chr3_3:14022372-14022391 None:intergenic 50.0%
! TTTTTGTGCCGCAGCTTCCA+TGG - chr3_3:14022510-14022529 Msa0443390:intron 50.0%
CAAGTAGATCTTCCTGGCCA+TGG + chr3_3:14022530-14022549 None:intergenic 50.0%
TGGCCAGGAAGATCTACTTG+AGG - chr3_3:14022530-14022549 Msa0443390:intron 50.0%
GGCCAGGAAGATCTACTTGA+GGG - chr3_3:14022531-14022550 Msa0443390:intron 50.0%
GCCAGGAAGATCTACTTGAG+GGG - chr3_3:14022532-14022551 Msa0443390:intron 50.0%
ACCCCTCAAGTAGATCTTCC+TGG + chr3_3:14022536-14022555 None:intergenic 50.0%
AGGAAGATCTACTTGAGGGG+TGG - chr3_3:14022535-14022554 Msa0443390:intron 50.0%
! ATCTACTTGAGGGGTGGACT+CGG - chr3_3:14022541-14022560 Msa0443390:intron 50.0%
CTGCTCTTGCAGAAATGAGG+TGG + chr3_3:14022619-14022638 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+AGG + chr3_3:14022622-14022641 None:intergenic 50.0%
CCTCATTTCTGCAAGAGCAG+TGG - chr3_3:14022619-14022638 Msa0443390:intron 50.0%
CTCTGACGTAGTACCAGTCA+GGG + chr3_3:14022372-14022391 None:intergenic 50.0%
! TTTTTGTGCCGCAGCTTCCA+TGG - chr3_3:14022510-14022529 Msa0443390:intron 50.0%
CAAGTAGATCTTCCTGGCCA+TGG + chr3_3:14022530-14022549 None:intergenic 50.0%
TGGCCAGGAAGATCTACTTG+AGG - chr3_3:14022530-14022549 Msa0443390:intron 50.0%
GGCCAGGAAGATCTACTTGA+GGG - chr3_3:14022531-14022550 Msa0443390:intron 50.0%
GCCAGGAAGATCTACTTGAG+GGG - chr3_3:14022532-14022551 Msa0443390:intron 50.0%
ACCCCTCAAGTAGATCTTCC+TGG + chr3_3:14022536-14022555 None:intergenic 50.0%
AGGAAGATCTACTTGAGGGG+TGG - chr3_3:14022535-14022554 Msa0443390:intron 50.0%
! ATCTACTTGAGGGGTGGACT+CGG - chr3_3:14022541-14022560 Msa0443390:intron 50.0%
CTGCTCTTGCAGAAATGAGG+TGG + chr3_3:14022619-14022638 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+AGG + chr3_3:14022622-14022641 None:intergenic 50.0%
CCTCATTTCTGCAAGAGCAG+TGG - chr3_3:14022619-14022638 Msa0443390:intron 50.0%
AGCTCGAGCAAGCAAAGCAG+CGG - chr3_3:14021309-14021328 Msa0443390:three_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG + chr3_3:14021340-14021359 None:intergenic 55.0%
TGGCTCCTTATGACCCTGAC+TGG - chr3_3:14022356-14022375 Msa0443390:intron 55.0%
GCTCTGACGTAGTACCAGTC+AGG + chr3_3:14022373-14022392 None:intergenic 55.0%
GACTGGTACTACGTCAGAGC+TGG - chr3_3:14022373-14022392 Msa0443390:intron 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG - chr3_3:14022560-14022579 Msa0443390:intron 55.0%
GGCAGGAAGATCACTTCCAG+TGG - chr3_3:14022989-14023008 Msa0443390:intron 55.0%
GGAAGATCACTTCCAGTGGC+AGG - chr3_3:14022993-14023012 Msa0443390:intron 55.0%
AGATCACTTCCAGTGGCAGG+AGG - chr3_3:14022996-14023015 Msa0443390:intron 55.0%
GATCACTTCCAGTGGCAGGA+GGG - chr3_3:14022997-14023016 Msa0443390:intron 55.0%
AGGGATCTGGACCAAGTTGC+TGG - chr3_3:14023016-14023035 Msa0443390:intron 55.0%
AGCTCGAGCAAGCAAAGCAG+CGG - chr3_3:14021309-14021328 Msa0443390:three_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG + chr3_3:14021340-14021359 None:intergenic 55.0%
TGGCTCCTTATGACCCTGAC+TGG - chr3_3:14022356-14022375 Msa0443390:intron 55.0%
GCTCTGACGTAGTACCAGTC+AGG + chr3_3:14022373-14022392 None:intergenic 55.0%
GACTGGTACTACGTCAGAGC+TGG - chr3_3:14022373-14022392 Msa0443390:intron 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG - chr3_3:14022560-14022579 Msa0443390:intron 55.0%
GGCAGGAAGATCACTTCCAG+TGG - chr3_3:14022989-14023008 Msa0443390:intron 55.0%
GGAAGATCACTTCCAGTGGC+AGG - chr3_3:14022993-14023012 Msa0443390:intron 55.0%
AGATCACTTCCAGTGGCAGG+AGG - chr3_3:14022996-14023015 Msa0443390:intron 55.0%
GATCACTTCCAGTGGCAGGA+GGG - chr3_3:14022997-14023016 Msa0443390:intron 55.0%
AGGGATCTGGACCAAGTTGC+TGG - chr3_3:14023016-14023035 Msa0443390:intron 55.0%
GCAAAGCAGCGGCACAACCA+TGG - chr3_3:14021320-14021339 Msa0443390:three_prime_UTR 60.0%
GCACAACCATGGCTACCGCA+AGG - chr3_3:14021331-14021350 Msa0443390:three_prime_UTR 60.0%
CTTCCTGGCCATGGAAGCTG+CGG + chr3_3:14022521-14022540 None:intergenic 60.0%
!! TTGAGGGGTGGACTCGGTGT+TGG - chr3_3:14022547-14022566 Msa0443390:intron 60.0%
TTCCAGTGGCAGGAGGGATC+TGG - chr3_3:14023003-14023022 Msa0443390:intron 60.0%
GCAAAGCAGCGGCACAACCA+TGG - chr3_3:14021320-14021339 Msa0443390:three_prime_UTR 60.0%
GCACAACCATGGCTACCGCA+AGG - chr3_3:14021331-14021350 Msa0443390:three_prime_UTR 60.0%
CTTCCTGGCCATGGAAGCTG+CGG + chr3_3:14022521-14022540 None:intergenic 60.0%
!! TTGAGGGGTGGACTCGGTGT+TGG - chr3_3:14022547-14022566 Msa0443390:intron 60.0%
TTCCAGTGGCAGGAGGGATC+TGG - chr3_3:14023003-14023022 Msa0443390:intron 60.0%
GTCCAGATCCCTCCTGCCAC+TGG + chr3_3:14023008-14023027 None:intergenic 65.0%
GTCCAGATCCCTCCTGCCAC+TGG + chr3_3:14023008-14023027 None:intergenic 65.0%
GTGCCGCAGCTTCCATGGCC+AGG - chr3_3:14022515-14022534 Msa0443390:intron 70.0%
GTGCCGCAGCTTCCATGGCC+AGG - chr3_3:14022515-14022534 Msa0443390:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 14021201 14023400 14021201 ID=Msa0443390;Name=Msa0443390
chr3_3 mRNA 14021201 14023400 14021201 ID=Msa0443390-mRNA-1;Parent=Msa0443390;Name=Msa0443390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|1|1|1|1|1|4|340|143
chr3_3 exon 14021201 14021613 14021201 ID=Msa0443390-mRNA-1:exon:3096;Parent=Msa0443390-mRNA-1
chr3_3 exon 14021894 14022077 14021894 ID=Msa0443390-mRNA-1:exon:3095;Parent=Msa0443390-mRNA-1
chr3_3 exon 14022207 14022297 14022207 ID=Msa0443390-mRNA-1:exon:3094;Parent=Msa0443390-mRNA-1
chr3_3 exon 14023179 14023400 14023179 ID=Msa0443390-mRNA-1:exon:3093;Parent=Msa0443390-mRNA-1
chr3_3 five_prime_UTR 14023263 14023400 14023263 ID=Msa0443390-mRNA-1:five_prime_utr;Parent=Msa0443390-mRNA-1
chr3_3 CDS 14023179 14023262 14023179 ID=Msa0443390-mRNA-1:cds;Parent=Msa0443390-mRNA-1
chr3_3 CDS 14022207 14022297 14022207 ID=Msa0443390-mRNA-1:cds;Parent=Msa0443390-mRNA-1
chr3_3 CDS 14021894 14022077 14021894 ID=Msa0443390-mRNA-1:cds;Parent=Msa0443390-mRNA-1
chr3_3 CDS 14021541 14021613 14021541 ID=Msa0443390-mRNA-1:cds;Parent=Msa0443390-mRNA-1
chr3_3 three_prime_UTR 14021201 14021540 14021201 ID=Msa0443390-mRNA-1:three_prime_utr;Parent=Msa0443390-mRNA-1
Gene Sequence

>Msa0443390

ATGGCTACCGCAAGGACTGTTCAAGATGTTTCTTCACACGAGTTTGTCAAAGCTTACTCTGCTCATCTCAAAAGATCTGGCAAGATGGAGCTTCCAGAATGGACAGATATTGTGAAGACTGCAAGGTTTAAGGAGTTGGCTCCTTATGACCCTGACTGGTACTACGTCAGAGCTGCTTCCATGGCCAGGAAGATCTACTTGAGGGGTGGACTCGGTGTTGGTGCATTCCAGAGGATTTATGGTGGAAGTCAGAGAAATGGCAGTCGTCCACCTCATTTCTGCAAGAGCAGTGGTTCCATTGCTCGCCACATTCTTCAACAGTTGCAGAACATGAACCTTATTGAGATGGACACCAAGGGTGGCAGGAAGATCACTTCCAGTGGCAGGAGGGATCTGGACCAAGTTGCTGGACGTATTGTTATTGCTCCTTGA

Protein sequence

>Msa0443390

MATARTVQDVSSHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMNLIEMDTKGGRKITSSGRRDLDQVAGRIVIAP*