AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0785130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0785130 MtrunA17_Chr5g0436331 99.270 137 1 0 1 137 1 137 1.19e-99 281
Msa0785130 MtrunA17_Chr7g0268051 94.643 112 6 0 26 137 1 112 7.06e-77 223
Msa0785130 MtrunA17_Chr7g0268081 83.333 90 15 0 43 132 10 99 4.82e-51 157
Msa0785130 MtrunA17_Chr7g0268061 83.333 90 15 0 43 132 10 99 4.82e-51 157
Msa0785130 MtrunA17_Chr7g0268071 96.104 77 3 0 48 124 14 90 6.28e-51 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0785130 AT1G07070.1 87.500 112 14 0 26 137 1 112 2.78e-72 212
Msa0785130 AT1G74270.1 88.393 112 13 0 26 137 1 112 3.87e-72 211
Msa0785130 AT3G55750.1 89.189 111 12 0 27 137 1 111 2.10e-71 209
Msa0785130 AT1G41880.1 88.288 111 13 0 27 137 1 111 3.11e-71 209
Msa0785130 AT1G41880.2 88.288 111 13 0 27 137 1 111 3.11e-71 209

Find 60 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGAATTACCATTGATTT+TGG 0.162742 5_2:+69920896 None:intergenic
GTTGAGTAATTATAGGTAAT+TGG 0.232438 5_2:+69918754 None:intergenic
CATCTTCACACCAATCAAAA+TGG 0.286862 5_2:-69921967 Msa0785130:CDS
ACACCAATCAAAATGGTTAA+AGG 0.309838 5_2:-69921960 Msa0785130:CDS
GAGGAGCCCCATTTGAGATT+TGG 0.311401 5_2:+69918835 None:intergenic
TACGTCAGGGGTACAGTTCT+TGG 0.315019 5_2:-69921771 Msa0785130:CDS
GAAGCCACTATCGCTGCATT+TGG 0.347853 5_2:-69920985 Msa0785130:CDS
ATTTGTTTGTGCAGGGAGCC+AGG 0.348132 5_2:-69920803 Msa0785130:intron
GAATTCAACATCCTAGAAAA+AGG 0.352289 5_2:+69918917 None:intergenic
AAGCCACTATCGCTGCATTT+GGG 0.372191 5_2:-69920984 Msa0785130:CDS
TGTTTAGTCCAAATCTCAAA+TGG 0.390857 5_2:-69918843 Msa0785130:three_prime_UTR
TTGTAATCAGGCTTTACGTC+AGG 0.401581 5_2:-69921785 Msa0785130:intron
ATGTATCCAAGCAATATATA+AGG 0.407008 5_2:-69920768 Msa0785130:intron
AAATTACCTTATATATTGCT+TGG 0.412163 5_2:+69920762 None:intergenic
ATCTGAACAAGAGAGGTGTT+TGG 0.416693 5_2:+69921094 None:intergenic
GACGACAAGGAGAACGTATC+AGG 0.417479 5_2:-69921938 Msa0785130:intron
GAGGAGGTTGCATGGTATGC+TGG 0.417733 5_2:-69921052 Msa0785130:CDS
GTTTAGTCCAAATCTCAAAT+GGG 0.418918 5_2:-69918842 Msa0785130:three_prime_UTR
CTATCGCTGCATTTGGGGTA+AGG 0.428656 5_2:-69920978 Msa0785130:CDS
AATGCAAAGACAACCAAAAC+AGG 0.438347 5_2:+69918974 None:intergenic
CCCAAAAGAACAAAATTAAG+AGG 0.453356 5_2:+69918816 None:intergenic
TCTGAACAAGAGAGGTGTTT+GGG 0.453404 5_2:+69921095 None:intergenic
TACCCCAAATGCAGCGATAG+TGG 0.457668 5_2:+69920981 None:intergenic
GTTTGGGTATTGATTTACCT+TGG 0.466066 5_2:+69921111 None:intergenic
ATGGTATGCTGGGAAGAAAT+TGG 0.469927 5_2:-69921041 Msa0785130:CDS
CTCTGTTAGTGTTCGTTCGG+CGG 0.470432 5_2:+69922006 None:intergenic
GCTTCCATCCTTCTTCACCT+TGG 0.472167 5_2:+69921003 None:intergenic
TGTCTCTGTTAGTGTTCGTT+CGG 0.488528 5_2:+69922003 None:intergenic
ACCTCTCTTGTTCAGATCGA+GGG 0.499812 5_2:-69921088 Msa0785130:CDS
GCATTTGGGGTAAGGTTACC+AGG 0.512393 5_2:-69920970 Msa0785130:CDS
ATACCATGCAACCTCCTCCT+TGG 0.519241 5_2:+69921057 None:intergenic
GCCACTGTTACCATGAGGCC+TGG 0.523824 5_2:+69920952 None:intergenic
AGGAGGTTGCATGGTATGCT+GGG 0.527652 5_2:-69921051 Msa0785130:CDS
TTTGTTTGTGCAGGGAGCCA+GGG 0.534698 5_2:-69920802 Msa0785130:intron
TTACAAGGCCAAGGTGAAGA+AGG 0.537680 5_2:-69921011 Msa0785130:CDS
TAACCTACCACCAAAATCAA+TGG 0.539094 5_2:-69920906 Msa0785130:intron
GGCATACATTTACAAGGCCA+AGG 0.547418 5_2:-69921020 Msa0785130:CDS
TGTAATCAGGCTTTACGTCA+GGG 0.561952 5_2:-69921784 Msa0785130:intron
GAAATTGGCATACATTTACA+AGG 0.562532 5_2:-69921026 Msa0785130:CDS
TCAATGACCTATCCAACTGC+TGG 0.564480 5_2:+69919010 None:intergenic
GCTACAGCCAGCAGTTGGAT+AGG 0.565012 5_2:-69919017 Msa0785130:three_prime_UTR
GTAATGTTGTTATAGGTCCA+AGG 0.573819 5_2:-69921128 Msa0785130:intron
ATACATAAATACTCTAACCC+TGG 0.583670 5_2:+69920785 None:intergenic
TTTAGTCCAAATCTCAAATG+GGG 0.584698 5_2:-69918841 Msa0785130:three_prime_UTR
GGTAAGGTTACCAGGCCTCA+TGG 0.585246 5_2:-69920962 Msa0785130:CDS
AAGGCCAAGGTGAAGAAGGA+TGG 0.591334 5_2:-69921007 Msa0785130:CDS
CACCTCTCTTGTTCAGATCG+AGG 0.592183 5_2:-69921089 Msa0785130:CDS
ACACCAAGGAGGAGGTTGCA+TGG 0.606757 5_2:-69921060 Msa0785130:CDS
GTAATCAGGCTTTACGTCAG+GGG 0.611028 5_2:-69921783 Msa0785130:intron
TGGTAGCTACAGCCAGCAGT+TGG 0.616775 5_2:-69919022 Msa0785130:three_prime_UTR
GGTTAGACTTGAACTTTGCG+CGG 0.621246 5_2:+69920924 None:intergenic
AGCCACTATCGCTGCATTTG+GGG 0.627011 5_2:-69920983 Msa0785130:CDS
CCTCTCTTGTTCAGATCGAG+GGG 0.637714 5_2:-69921087 Msa0785130:CDS
GTACAGTTCTTGGATACAAG+AGG 0.641528 5_2:-69921761 Msa0785130:intron
CCCCTCGATCTGAACAAGAG+AGG 0.655801 5_2:+69921087 None:intergenic
ACCAGGCCTCATGGTAACAG+TGG 0.661908 5_2:-69920953 Msa0785130:CDS
ACGAACACTAACAGAGACAG+AGG 0.667723 5_2:-69921999 Msa0785130:CDS
AAAATGGTTAAAGGACGACA+AGG 0.679088 5_2:-69921951 Msa0785130:CDS
CTCTCTTGTTCAGATCGAGG+GGG 0.711001 5_2:-69921086 Msa0785130:CDS
ACAATGCCACTGTTACCATG+AGG 0.746625 5_2:+69920947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAATATAATTATTT+GGG + chr5_2:69920142-69920161 None:intergenic 0.0%
!! AAATTAATAATATAATTATT+TGG + chr5_2:69920143-69920162 None:intergenic 0.0%
!!! TAATTAAATCTAATTTGTTT+GGG - chr5_2:69919106-69919125 Msa0785130:intron 10.0%
!!! TAATTTTACCATTTTATTAA+TGG - chr5_2:69920006-69920025 Msa0785130:intron 10.0%
!!! ACATTATAAATTAATTTTTC+AGG + chr5_2:69921190-69921209 None:intergenic 10.0%
!!! CTAATTAAATCTAATTTGTT+TGG - chr5_2:69919105-69919124 Msa0785130:intron 15.0%
!!! AATTCTTTAAGACATTTAAA+TGG - chr5_2:69919869-69919888 Msa0785130:intron 15.0%
!! AACACAATGAAATTTAAATA+GGG + chr5_2:69920395-69920414 None:intergenic 15.0%
!! TATTTAAATTTCATTGTGTT+GGG - chr5_2:69920395-69920414 Msa0785130:intron 15.0%
!! TTAAATTGAAGTAAAAAATG+TGG + chr5_2:69920726-69920745 None:intergenic 15.0%
!!! TTTTAACAAAAATTGTTTCT+AGG - chr5_2:69920813-69920832 Msa0785130:intron 15.0%
!!! ATTTTCATAAAACAGAAATA+AGG + chr5_2:69920986-69921005 None:intergenic 15.0%
!!! TTTGGGTATTATTTTTTGTA+TGG - chr5_2:69919460-69919479 Msa0785130:intron 20.0%
!! CGGAAGAAAAATTATATATT+TGG + chr5_2:69919519-69919538 None:intergenic 20.0%
!!! TAAAGAATTACCATTGATTT+TGG + chr5_2:69919858-69919877 None:intergenic 20.0%
!! AAATTACCTTATATATTGCT+TGG + chr5_2:69919992-69920011 None:intergenic 20.0%
!! GTTAACAACCATTAATAAAA+TGG + chr5_2:69920017-69920036 None:intergenic 20.0%
!! CAACAATTGAATCATAATAA+TGG + chr5_2:69920115-69920134 None:intergenic 20.0%
!! CAACACAATGAAATTTAAAT+AGG + chr5_2:69920396-69920415 None:intergenic 20.0%
!! CTATTTAAATTTCATTGTGT+TGG - chr5_2:69920394-69920413 Msa0785130:intron 20.0%
!! ATATCAAAGATCAATTAAGT+GGG + chr5_2:69920449-69920468 None:intergenic 20.0%
!! AATATCAAAGATCAATTAAG+TGG + chr5_2:69920450-69920469 None:intergenic 20.0%
!! AATTGATCTTTGATATTTGT+CGG - chr5_2:69920453-69920472 Msa0785130:intron 20.0%
!! ATCTTAGAAACTATAAAACT+TGG + chr5_2:69920511-69920530 None:intergenic 20.0%
!!! TTAGATCATTTCTTTTTAGT+TGG - chr5_2:69921390-69921409 Msa0785130:intron 20.0%
!! TTGATTTTGTGTTTGTAATC+AGG - chr5_2:69918954-69918973 Msa0785130:three_prime_UTR 25.0%
!!! ATGTTTAATGTTGTTTTAGC+TGG - chr5_2:69919193-69919212 Msa0785130:intron 25.0%
! ACAAACACAAATTAAAAGCT+GGG + chr5_2:69919278-69919297 None:intergenic 25.0%
! TTAAAAACCAAGACTCAATT+TGG - chr5_2:69919309-69919328 Msa0785130:intron 25.0%
!! TATTTTATCGAGGATACATT+GGG + chr5_2:69919355-69919374 None:intergenic 25.0%
!! ATATTTTATCGAGGATACAT+TGG + chr5_2:69919356-69919375 None:intergenic 25.0%
!! TTGGGTATTATATTTTATCG+AGG + chr5_2:69919365-69919384 None:intergenic 25.0%
!!! GACTAAATGATTACTGATTT+GGG - chr5_2:69919443-69919462 Msa0785130:intron 25.0%
! ATCAAAATCAAGAACTACTA+GGG + chr5_2:69919562-69919581 None:intergenic 25.0%
! GATTATTTGTGCTAAGAAAT+TGG - chr5_2:69919601-69919620 Msa0785130:intron 25.0%
!!! GAAATTGGTAATGTTGTTAT+AGG - chr5_2:69919616-69919635 Msa0785130:intron 25.0%
!!! TTTATGGTTTCTGAAAGTTT+TGG - chr5_2:69919920-69919939 Msa0785130:intron 25.0%
! ATGTATCCAAGCAATATATA+AGG - chr5_2:69919983-69920002 Msa0785130:intron 25.0%
!! AATTCTAGAGAAACAGAAAT+GGG + chr5_2:69920207-69920226 None:intergenic 25.0%
!!! TACAGTCTTTTTTTTATCCA+TGG - chr5_2:69920233-69920252 Msa0785130:intron 25.0%
!!! ACAGTCTTTTTTTTATCCAT+GGG - chr5_2:69920234-69920253 Msa0785130:intron 25.0%
!! TATTTTCATGGTGTATATAG+TGG - chr5_2:69920282-69920301 Msa0785130:intron 25.0%
! ACAATATAAACAATCAGTTG+AGG + chr5_2:69920346-69920365 None:intergenic 25.0%
! CAACTGATTGTTTATATTGT+TGG - chr5_2:69920346-69920365 Msa0785130:intron 25.0%
!!! TTTATATTGTTGGCTTTCTT+TGG - chr5_2:69920356-69920375 Msa0785130:intron 25.0%
! ATTGATCTTTGATATTTGTC+GGG - chr5_2:69920454-69920473 Msa0785130:intron 25.0%
!!! TTTCTAAGATTTTATGTGTG+CGG - chr5_2:69920521-69920540 Msa0785130:intron 25.0%
!!! AATTTGTAAGCCAGTTTTAT+TGG + chr5_2:69920604-69920623 None:intergenic 25.0%
! CTATTTCAACTTAATGAGAA+AGG + chr5_2:69920689-69920708 None:intergenic 25.0%
! GTTTAACAAAAATTGTTTCC+AGG - chr5_2:69921071-69921090 Msa0785130:CDS 25.0%
!!! TAATCTTGTTATTTGCTTGT+TGG - chr5_2:69921320-69921339 Msa0785130:intron 25.0%
! ATTCCTTACATTGAGATTAT+AGG - chr5_2:69921365-69921384 Msa0785130:intron 25.0%
! AAACCTATAATCTCAATGTA+AGG + chr5_2:69921371-69921390 None:intergenic 25.0%
! CATTAAAGAAACAATTCACT+TGG + chr5_2:69921520-69921539 None:intergenic 25.0%
! TGTACCAATTTATGATCATT+AGG - chr5_2:69921538-69921557 Msa0785130:intron 25.0%
! GTACCAATTTATGATCATTA+GGG - chr5_2:69921539-69921558 Msa0785130:intron 25.0%
! AGAATAAGAGAATGATTCTA+TGG + chr5_2:69921648-69921667 None:intergenic 25.0%
!! CATTCCTAATCTTTGAATTT+TGG - chr5_2:69921685-69921704 Msa0785130:intron 25.0%
!! AGTTTTTATTCATCCTGTTT+TGG - chr5_2:69921764-69921783 Msa0785130:CDS 25.0%
!! TCCTCTTAATTTTGTTCTTT+TGG - chr5_2:69921934-69921953 Msa0785130:intron 25.0%
!! CCTCTTAATTTTGTTCTTTT+GGG - chr5_2:69921935-69921954 Msa0785130:intron 25.0%
! GTTGAGTAATTATAGGTAAT+TGG + chr5_2:69922000-69922019 None:intergenic 25.0%
!!! CTTTTGAGTTGAGTAATTAT+AGG + chr5_2:69922007-69922026 None:intergenic 25.0%
!! CAACTCAAAAGTAATTTTCA+AGG - chr5_2:69922016-69922035 Msa0785130:CDS 25.0%
ACACCAATCAAAATGGTTAA+AGG - chr5_2:69918791-69918810 Msa0785130:three_prime_UTR 30.0%
GTTAAACGAAATAGATCGAA+GGG + chr5_2:69918851-69918870 None:intergenic 30.0%
TGTTAAACGAAATAGATCGA+AGG + chr5_2:69918852-69918871 None:intergenic 30.0%
TGCTGTATTTGATGTATTCT+TGG - chr5_2:69919048-69919067 Msa0785130:intron 30.0%
GCTGTATTTGATGTATTCTT+GGG - chr5_2:69919049-69919068 Msa0785130:intron 30.0%
CACAAACACAAATTAAAAGC+TGG + chr5_2:69919279-69919298 None:intergenic 30.0%
! GGACTAAATGATTACTGATT+TGG - chr5_2:69919442-69919461 Msa0785130:intron 30.0%
CATCAAAATCAAGAACTACT+AGG + chr5_2:69919563-69919582 None:intergenic 30.0%
!! TCTTGATTTTGATGTTGATC+TGG - chr5_2:69919569-69919588 Msa0785130:intron 30.0%
!! CTTGATTTTGATGTTGATCT+GGG - chr5_2:69919570-69919589 Msa0785130:intron 30.0%
GAAATTGGCATACATTTACA+AGG - chr5_2:69919725-69919744 Msa0785130:intron 30.0%
!!! AGAATTACCATTGATTTTGG+TGG + chr5_2:69919855-69919874 None:intergenic 30.0%
TTCAGAAACCATAAAACAGT+TGG + chr5_2:69919915-69919934 None:intergenic 30.0%
ATACATAAATACTCTAACCC+TGG + chr5_2:69919969-69919988 None:intergenic 30.0%
! AATATGCTTTTGTGAACACT+TGG - chr5_2:69920073-69920092 Msa0785130:intron 30.0%
!! ACACTTGGTTTAAGATTTTG+AGG - chr5_2:69920088-69920107 Msa0785130:intron 30.0%
!! CACTTGGTTTAAGATTTTGA+GGG - chr5_2:69920089-69920108 Msa0785130:intron 30.0%
!! ACTTATGACTTCAAGTTGAT+TGG + chr5_2:69920181-69920200 None:intergenic 30.0%
! CAATTCTAGAGAAACAGAAA+TGG + chr5_2:69920208-69920227 None:intergenic 30.0%
! CTTACAAATTCATCTAGTTC+TGG - chr5_2:69920614-69920633 Msa0785130:intron 30.0%
! AATTGGCTCACATTCTTATT+TGG - chr5_2:69920920-69920939 Msa0785130:CDS 30.0%
GAGAGAAAACAGACAATATA+AGG + chr5_2:69920964-69920983 None:intergenic 30.0%
TATATGCACAGATAAAATCC+TGG + chr5_2:69921092-69921111 None:intergenic 30.0%
! TTTTGCACATAGAAAGATAG+AGG - chr5_2:69921249-69921268 Msa0785130:intron 30.0%
TTTGCACATAGAAAGATAGA+GGG - chr5_2:69921250-69921269 Msa0785130:intron 30.0%
!!! GTGCCTGTTCTAAAATTTTT+AGG - chr5_2:69921412-69921431 Msa0785130:intron 30.0%
!!! GTGCCTAAAAATTTTAGAAC+AGG + chr5_2:69921418-69921437 None:intergenic 30.0%
TGGTAGTATCTATTCTTTCA+TGG - chr5_2:69921451-69921470 Msa0785130:intron 30.0%
GGTAGTATCTATTCTTTCAT+GGG - chr5_2:69921452-69921471 Msa0785130:intron 30.0%
AGCATCTTAAGACTAATTGA+GGG - chr5_2:69921475-69921494 Msa0785130:intron 30.0%
!! CAAGCAATTTCTAGAATAAG+AGG + chr5_2:69921599-69921618 None:intergenic 30.0%
! CTTGCTTAATCTTTGCATTT+TGG - chr5_2:69921615-69921634 Msa0785130:intron 30.0%
CGAACCAAAATTCAAAGATT+AGG + chr5_2:69921692-69921711 None:intergenic 30.0%
!! TTTTGGTTGTCTTTGCATTT+TGG - chr5_2:69921781-69921800 Msa0785130:intron 30.0%
! ACAGAAGATTTCCTTTTTCT+AGG - chr5_2:69921823-69921842 Msa0785130:intron 30.0%
GAATTCAACATCCTAGAAAA+AGG + chr5_2:69921837-69921856 None:intergenic 30.0%
TGTTTAGTCCAAATCTCAAA+TGG - chr5_2:69921908-69921927 Msa0785130:intron 30.0%
GTTTAGTCCAAATCTCAAAT+GGG - chr5_2:69921909-69921928 Msa0785130:intron 30.0%
TTTAGTCCAAATCTCAAATG+GGG - chr5_2:69921910-69921929 Msa0785130:intron 30.0%
CCCAAAAGAACAAAATTAAG+AGG + chr5_2:69921938-69921957 None:intergenic 30.0%
CATCTTCACACCAATCAAAA+TGG - chr5_2:69918784-69918803 Msa0785130:three_prime_UTR 35.0%
!! CGTCCTTTAACCATTTTGAT+TGG + chr5_2:69918797-69918816 None:intergenic 35.0%
AAAATGGTTAAAGGACGACA+AGG - chr5_2:69918800-69918819 Msa0785130:three_prime_UTR 35.0%
TTGGTCCTTCACAATATTTG+CGG - chr5_2:69919328-69919347 Msa0785130:intron 35.0%
CCTAGACTCATTATCAAAAG+CGG + chr5_2:69919424-69919443 None:intergenic 35.0%
TGAAGACACATTATGTACGA+CGG + chr5_2:69919539-69919558 None:intergenic 35.0%
GTAATGTTGTTATAGGTCCA+AGG - chr5_2:69919623-69919642 Msa0785130:intron 35.0%
!! GTTTGGGTATTGATTTACCT+TGG + chr5_2:69919643-69919662 None:intergenic 35.0%
TAACCTACCACCAAAATCAA+TGG - chr5_2:69919845-69919864 Msa0785130:intron 35.0%
!!! TTACCATTGATTTTGGTGGT+AGG + chr5_2:69919851-69919870 None:intergenic 35.0%
!! CCATAAAACAGTTGGTGAAA+AGG + chr5_2:69919907-69919926 None:intergenic 35.0%
! CCTTTTCACCAACTGTTTTA+TGG - chr5_2:69919904-69919923 Msa0785130:intron 35.0%
!! TCTGTTTCTCTAGAATTGTC+TGG - chr5_2:69920210-69920229 Msa0785130:intron 35.0%
!!! TGTGCATTGTGCTATTTTCA+TGG - chr5_2:69920270-69920289 Msa0785130:intron 35.0%
CAAAGATCAATTAAGTGGGT+TGG + chr5_2:69920445-69920464 None:intergenic 35.0%
GAGATGTGTTCCAATAAAAC+TGG - chr5_2:69920591-69920610 Msa0785130:intron 35.0%
! AAATCGCACTTAGTTCTTCT+TGG - chr5_2:69920781-69920800 Msa0785130:CDS 35.0%
TTGAGACGTCTTTGTATCTA+TGG - chr5_2:69920875-69920894 Msa0785130:intron 35.0%
AGAATGTGAGCCAATTACAT+TGG + chr5_2:69920916-69920935 None:intergenic 35.0%
CTGATTGTTTGATCTCTTTC+TGG - chr5_2:69921011-69921030 Msa0785130:CDS 35.0%
! ATACTGCACTTAGTTCTTCT+TGG - chr5_2:69921041-69921060 Msa0785130:CDS 35.0%
! TGAGGCTTCTCTTTTATTCA+TGG - chr5_2:69921134-69921153 Msa0785130:intron 35.0%
TCACACCTCATTTGGTAAAT+TGG - chr5_2:69921291-69921310 Msa0785130:intron 35.0%
GCTAACCAATTTACCAAATG+AGG + chr5_2:69921299-69921318 None:intergenic 35.0%
! TAGGCACTCTACATTTTGTT+TGG - chr5_2:69921431-69921450 Msa0785130:intron 35.0%
GAGCATCTTAAGACTAATTG+AGG - chr5_2:69921474-69921493 Msa0785130:intron 35.0%
GTGCCCTAATGATCATAAAT+TGG + chr5_2:69921545-69921564 None:intergenic 35.0%
AATGCAAAGACAACCAAAAC+AGG + chr5_2:69921780-69921799 None:intergenic 35.0%
TGTCTCTGTTAGTGTTCGTT+CGG + chr5_2:69918751-69918770 None:intergenic 40.0%
TTGTAATCAGGCTTTACGTC+AGG - chr5_2:69918966-69918985 Msa0785130:three_prime_UTR 40.0%
TGTAATCAGGCTTTACGTCA+GGG - chr5_2:69918967-69918986 Msa0785130:three_prime_UTR 40.0%
GTACAGTTCTTGGATACAAG+AGG - chr5_2:69918990-69919009 Msa0785130:three_prime_UTR 40.0%
TGAAGGACCAAATTGAGTCT+TGG + chr5_2:69919319-69919338 None:intergenic 40.0%
TGGTCCTTCACAATATTTGC+GGG - chr5_2:69919329-69919348 Msa0785130:intron 40.0%
!! GATAATGCTGGGACTAGTTT+GGG + chr5_2:69919383-69919402 None:intergenic 40.0%
!! TGATAATGCTGGGACTAGTT+TGG + chr5_2:69919384-69919403 None:intergenic 40.0%
!!! CCGCTTTTGATAATGAGTCT+AGG - chr5_2:69919421-69919440 Msa0785130:intron 40.0%
!! TCTGAACAAGAGAGGTGTTT+GGG + chr5_2:69919659-69919678 None:intergenic 40.0%
!! ATCTGAACAAGAGAGGTGTT+TGG + chr5_2:69919660-69919679 None:intergenic 40.0%
ATGGTATGCTGGGAAGAAAT+TGG - chr5_2:69919710-69919729 Msa0785130:intron 40.0%
!! TGGTGTTGATTTGTTTGTGC+AGG - chr5_2:69919940-69919959 Msa0785130:intron 40.0%
!! GGTGTTGATTTGTTTGTGCA+GGG - chr5_2:69919941-69919960 Msa0785130:intron 40.0%
ACAACAAACTAAGACACCCA+TGG + chr5_2:69920253-69920272 None:intergenic 40.0%
!! AATTAAGTGGGTTGGATGGA+TGG + chr5_2:69920437-69920456 None:intergenic 40.0%
!! GATCAATTAAGTGGGTTGGA+TGG + chr5_2:69920441-69920460 None:intergenic 40.0%
GAGATGTGCTCCAATGTAAT+TGG - chr5_2:69920903-69920922 Msa0785130:intron 40.0%
AGAAAGATAGAGGGTGAGAT+TGG - chr5_2:69921259-69921278 Msa0785130:intron 40.0%
TCTTGCTTTCACACCTCATT+TGG - chr5_2:69921283-69921302 Msa0785130:intron 40.0%
AGATTAGGAATGCAGCTTCA+AGG + chr5_2:69921677-69921696 None:intergenic 40.0%
! TCGTCTTTGCAGATTTTCGT+TGG - chr5_2:69921709-69921728 Msa0785130:intron 40.0%
ACGAACACTAACAGAGACAG+AGG - chr5_2:69918752-69918771 Msa0785130:three_prime_UTR 45.0%
GTAATCAGGCTTTACGTCAG+GGG - chr5_2:69918968-69918987 Msa0785130:three_prime_UTR 45.0%
TCCCAGCATTATCACAGTAC+AGG - chr5_2:69919390-69919409 Msa0785130:intron 45.0%
! GCCTGTACTGTGATAATGCT+GGG + chr5_2:69919394-69919413 None:intergenic 45.0%
! TGCCTGTACTGTGATAATGC+TGG + chr5_2:69919395-69919414 None:intergenic 45.0%
TTGATGTTGATCTGGGTTGC+TGG - chr5_2:69919577-69919596 Msa0785130:intron 45.0%
ACCTCTCTTGTTCAGATCGA+GGG - chr5_2:69919663-69919682 Msa0785130:intron 45.0%
GGCATACATTTACAAGGCCA+AGG - chr5_2:69919731-69919750 Msa0785130:intron 45.0%
TTACAAGGCCAAGGTGAAGA+AGG - chr5_2:69919740-69919759 Msa0785130:intron 45.0%
AAGCCACTATCGCTGCATTT+GGG - chr5_2:69919767-69919786 Msa0785130:intron 45.0%
ACAATGCCACTGTTACCATG+AGG + chr5_2:69919807-69919826 None:intergenic 45.0%
GGTTAGACTTGAACTTTGCG+CGG + chr5_2:69919830-69919849 None:intergenic 45.0%
TTGGTTCCCAAGATGATCTG+CGG + chr5_2:69920492-69920511 None:intergenic 45.0%
AGGAGAAGGTTCAAGCAGAA+AGG + chr5_2:69920562-69920581 None:intergenic 45.0%
TGAACCTTCTCCTCTATGCA+TGG - chr5_2:69920569-69920588 Msa0785130:intron 45.0%
ATCTCCATGCATAGAGGAGA+AGG + chr5_2:69920576-69920595 None:intergenic 45.0%
GAACACATCTCCATGCATAG+AGG + chr5_2:69920582-69920601 None:intergenic 45.0%
CAAAGACGTCTCAAGCAGAA+AGG + chr5_2:69920869-69920888 None:intergenic 45.0%
GTGTAAAACCTCTCTGCTTG+AGG - chr5_2:69921116-69921135 Msa0785130:CDS 45.0%
GAGATGTTCTCCAATGTGAC+TGG - chr5_2:69921156-69921175 Msa0785130:intron 45.0%
GGAATGTAAGCCAGTCACAT+TGG + chr5_2:69921169-69921188 None:intergenic 45.0%
!! AGGGTATTGCACACGTTAAC+TGG - chr5_2:69921494-69921513 Msa0785130:intron 45.0%
TCAATGACCTATCCAACTGC+TGG + chr5_2:69921744-69921763 None:intergenic 45.0%
CTCTGTTAGTGTTCGTTCGG+CGG + chr5_2:69918748-69918767 None:intergenic 50.0%
GACGACAAGGAGAACGTATC+AGG - chr5_2:69918813-69918832 Msa0785130:three_prime_UTR 50.0%
! TACGTCAGGGGTACAGTTCT+TGG - chr5_2:69918980-69918999 Msa0785130:three_prime_UTR 50.0%
TGGGCCCGCAAATATTGTGA+AGG + chr5_2:69919336-69919355 None:intergenic 50.0%
CACCTCTCTTGTTCAGATCG+AGG - chr5_2:69919662-69919681 Msa0785130:intron 50.0%
CCTCTCTTGTTCAGATCGAG+GGG - chr5_2:69919664-69919683 Msa0785130:intron 50.0%
CTCTCTTGTTCAGATCGAGG+GGG - chr5_2:69919665-69919684 Msa0785130:intron 50.0%
ATACCATGCAACCTCCTCCT+TGG + chr5_2:69919697-69919716 None:intergenic 50.0%
AGGAGGTTGCATGGTATGCT+GGG - chr5_2:69919700-69919719 Msa0785130:intron 50.0%
AAGGCCAAGGTGAAGAAGGA+TGG - chr5_2:69919744-69919763 Msa0785130:intron 50.0%
GCTTCCATCCTTCTTCACCT+TGG + chr5_2:69919751-69919770 None:intergenic 50.0%
GAAGCCACTATCGCTGCATT+TGG - chr5_2:69919766-69919785 Msa0785130:intron 50.0%
AGCCACTATCGCTGCATTTG+GGG - chr5_2:69919768-69919787 Msa0785130:intron 50.0%
TACCCCAAATGCAGCGATAG+TGG + chr5_2:69919773-69919792 None:intergenic 50.0%
! CTATCGCTGCATTTGGGGTA+AGG - chr5_2:69919773-69919792 Msa0785130:intron 50.0%
! GCATTTGGGGTAAGGTTACC+AGG - chr5_2:69919781-69919800 Msa0785130:intron 50.0%
ATTTGTTTGTGCAGGGAGCC+AGG - chr5_2:69919948-69919967 Msa0785130:intron 50.0%
TTTGTTTGTGCAGGGAGCCA+GGG - chr5_2:69919949-69919968 Msa0785130:intron 50.0%
AAACTGCCCGCAGATCATCT+TGG - chr5_2:69920482-69920501 Msa0785130:intron 50.0%
AACTGCCCGCAGATCATCTT+GGG - chr5_2:69920483-69920502 Msa0785130:intron 50.0%
TGGTTCCCAAGATGATCTGC+GGG + chr5_2:69920491-69920510 None:intergenic 50.0%
AAGAGAAGCCTCAAGCAGAG+AGG + chr5_2:69921127-69921146 None:intergenic 50.0%
! GAGGAGCCCCATTTGAGATT+TGG + chr5_2:69921919-69921938 None:intergenic 50.0%
CCCCTCGATCTGAACAAGAG+AGG + chr5_2:69919667-69919686 None:intergenic 55.0%
GATCGAGGGGGTAAACACCA+AGG - chr5_2:69919677-69919696 Msa0785130:intron 55.0%
ACACCAAGGAGGAGGTTGCA+TGG - chr5_2:69919691-69919710 Msa0785130:intron 55.0%
GAGGAGGTTGCATGGTATGC+TGG - chr5_2:69919699-69919718 Msa0785130:intron 55.0%
GGTAAGGTTACCAGGCCTCA+TGG - chr5_2:69919789-69919808 Msa0785130:intron 55.0%
ACCAGGCCTCATGGTAACAG+TGG - chr5_2:69919798-69919817 Msa0785130:intron 55.0%
TGGTAGCTACAGCCAGCAGT+TGG - chr5_2:69921729-69921748 Msa0785130:intron 55.0%
GCTACAGCCAGCAGTTGGAT+AGG - chr5_2:69921734-69921753 Msa0785130:intron 55.0%
CGAGGGGGTAAACACCAAGG+AGG - chr5_2:69919680-69919699 Msa0785130:intron 60.0%
GGGGGTAAACACCAAGGAGG+AGG - chr5_2:69919683-69919702 Msa0785130:intron 60.0%
GCCACTGTTACCATGAGGCC+TGG + chr5_2:69919802-69919821 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 69918728 69922045 69918728 ID=Msa0785130;Name=Msa0785130
chr5_2 mRNA 69918728 69922045 69918728 ID=Msa0785130-mRNA-1;Parent=Msa0785130;Name=Msa0785130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.8|1|0.75|0.6|5|326|137
chr5_2 exon 69918728 69919052 69918728 ID=Msa0785130-mRNA-1:exon:21106;Parent=Msa0785130-mRNA-1
chr5_2 exon 69920769 69920811 69920769 ID=Msa0785130-mRNA-1:exon:21105;Parent=Msa0785130-mRNA-1
chr5_2 exon 69920907 69921135 69920907 ID=Msa0785130-mRNA-1:exon:21104;Parent=Msa0785130-mRNA-1
chr5_2 exon 69921762 69921797 69921762 ID=Msa0785130-mRNA-1:exon:21103;Parent=Msa0785130-mRNA-1
chr5_2 exon 69921939 69922045 69921939 ID=Msa0785130-mRNA-1:exon:21102;Parent=Msa0785130-mRNA-1
chr5_2 CDS 69921939 69922045 69921939 ID=Msa0785130-mRNA-1:cds;Parent=Msa0785130-mRNA-1
chr5_2 CDS 69921762 69921797 69921762 ID=Msa0785130-mRNA-1:cds;Parent=Msa0785130-mRNA-1
chr5_2 CDS 69920907 69921135 69920907 ID=Msa0785130-mRNA-1:cds;Parent=Msa0785130-mRNA-1
chr5_2 CDS 69920770 69920811 69920770 ID=Msa0785130-mRNA-1:cds;Parent=Msa0785130-mRNA-1
chr5_2 three_prime_UTR 69920769 69920769 69920769 ID=Msa0785130-mRNA-1:three_prime_utr;Parent=Msa0785130-mRNA-1
chr5_2 three_prime_UTR 69918728 69919052 69918728 ID=Msa0785130-mRNA-1:three_prime_utr;Parent=Msa0785130-mRNA-1
Gene Sequence

>Msa0785130

ATGAATCTGTGCTGCTTCCGCCGAACGAACACTAACAGAGACAGAGGCAGCTTCTTCATCTTCACACCAATCAAAATGGTTAAAGGACGACAAGGAGAACGTATCAGGCTTTACGTCAGGGGTACAGTTCTTGGATACAAGAGGTCCAAGGTAAATCAATACCCAAACACCTCTCTTGTTCAGATCGAGGGGGTAAACACCAAGGAGGAGGTTGCATGGTATGCTGGGAAGAAATTGGCATACATTTACAAGGCCAAGGTGAAGAAGGATGGAAGCCACTATCGCTGCATTTGGGGTAAGGTTACCAGGCCTCATGGTAACAGTGGCATTGTCCGCGCAAAGTTCAAGTCTAACCTACCACCAAAATCAATGGGAGCCAGGGTTAGAGTATTTATGTATCCAAGCAATATATAA

Protein sequence

>Msa0785130

MNLCCFRRTNTNRDRGSFFIFTPIKMVKGRQGERIRLYVRGTVLGYKRSKVNQYPNTSLVQIEGVNTKEEVAWYAGKKLAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI*