AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666230 MtrunA17_Chr4g0004631 100.000 95 0 0 1 95 1 95 3.16e-65 191
Msa0666230 MtrunA17_Chr2g0331701 96.809 94 3 0 1 94 1 94 1.10e-62 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666230 AT1G52300.1 89.362 94 10 0 1 94 1 94 1.72e-57 172
Msa0666230 AT3G16080.1 88.298 94 11 0 1 94 1 94 4.23e-57 171
Msa0666230 AT1G15250.2 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0666230 AT1G15250.1 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0666230 AT3G16080.2 93.333 45 3 0 1 45 1 45 9.79e-25 89.0

Find 47 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGCAGTCTCTCTGATT+AGG 0.241536 4_4:+6032125 Msa0666230:five_prime_UTR
AGCAGCTGCTCCCTTGTTCC+TGG 0.247813 4_4:-6033671 None:intergenic
TTTAATTATGTTACAATGTC+AGG 0.318963 4_4:+6033826 Msa0666230:three_prime_UTR
ACTGGAGTGAGAAGGCTATT+AGG 0.322324 4_4:+6032608 Msa0666230:CDS
ATTGTGTGATTTCAGATAAC+TGG 0.324608 4_4:+6032590 Msa0666230:intron
GCTGCTTCTACCTAAGTCTT+TGG 0.329136 4_4:+6033688 Msa0666230:exon
TAACGCAGTCTCTCTGATTA+GGG 0.350042 4_4:+6032126 Msa0666230:five_prime_UTR
TTGCTGGGCTAATTAATGAT+AGG 0.376503 4_4:+6033722 Msa0666230:three_prime_UTR
ATGCTGAGCAGCGACTCTTC+TGG 0.400063 4_4:-6032382 None:intergenic
AATTTATATATGAACTCAAA+TGG 0.404538 4_4:-6032092 None:intergenic
ATTAAATTCATATTGAAAGA+AGG 0.420357 4_4:-6033809 None:intergenic
CATTTCCTGACACGTGCAGC+TGG 0.423824 4_4:-6032413 None:intergenic
GCAGCTGCTCCCTTGTTCCT+GGG 0.437974 4_4:-6033670 None:intergenic
TTAAATTCATATTGAAAGAA+GGG 0.463210 4_4:-6033808 None:intergenic
AGGAGAAAGACCACTGGAAC+TGG 0.467139 4_4:+6032628 Msa0666230:CDS
ATTTATATATGAACTCAAAT+GGG 0.468765 4_4:-6032091 None:intergenic
CTTACCCAGCTGCACGTGTC+AGG 0.470321 4_4:+6032408 Msa0666230:CDS
AGACCCACACACTCTGCGTC+AGG 0.495241 4_4:+6032336 Msa0666230:CDS
TTTACATATGGGCCTTAATG+TGG 0.505509 4_4:-6032053 None:intergenic
GGTAAGGGAACAGGTAGTTT+CGG 0.507512 4_4:+6032299 Msa0666230:CDS
AAGCAATGTTCCAAAGACTT+AGG 0.510606 4_4:-6033698 None:intergenic
CACACCTGACGCAGAGTGTG+TGG 0.511653 4_4:-6032340 None:intergenic
GACGAAGCAGAAGCAGAAGC+AGG 0.520099 4_4:-6032156 None:intergenic
AGGGAAATGAAAACAACAGA+TGG 0.548538 4_4:-6033789 None:intergenic
TGAAGCTGCACCCAGGAACA+AGG 0.550050 4_4:+6033660 Msa0666230:CDS
AACACGTGACTTGAGTTGGC+CGG 0.555165 4_4:+6033940 Msa0666230:three_prime_UTR
AGCAGCGACTCTTCTGGAGA+TGG 0.555977 4_4:-6032376 None:intergenic
TTATAACACGTGACTTGAGT+TGG 0.564455 4_4:+6033936 Msa0666230:three_prime_UTR
CACACACTCTGCGTCAGGTG+TGG 0.567226 4_4:+6032341 Msa0666230:CDS
TTCAAGAGTGGATTCAGAGA+AGG 0.583941 4_4:+6032685 Msa0666230:CDS
TGTTAAATGAGAATTTGAGT+TGG 0.601919 4_4:+6033867 Msa0666230:three_prime_UTR
ACACCTGACGCAGAGTGTGT+GGG 0.604990 4_4:-6032339 None:intergenic
TTCAGATAACTGGAGTGAGA+AGG 0.609846 4_4:+6032600 Msa0666230:intron
ATTTCCTGACACGTGCAGCT+GGG 0.610760 4_4:-6032412 None:intergenic
GAAGCAGAAGCAGAAGCAGG+TGG 0.613188 4_4:-6032153 None:intergenic
CAGGTAGTTTCGGTAAGAGA+AGG 0.616160 4_4:+6032309 Msa0666230:CDS
CCACTGGAACTGGTAGGATG+AGG 0.619264 4_4:+6032638 Msa0666230:CDS
GCTATTAGGAGAAAGACCAC+TGG 0.627964 4_4:+6032622 Msa0666230:CDS
CTGGTAGGATGAGGTACTTG+AGG 0.643276 4_4:+6032647 Msa0666230:CDS
GAAAGACCACTGGAACTGGT+AGG 0.652178 4_4:+6032632 Msa0666230:CDS
GAAGCTGCACCCAGGAACAA+GGG 0.652652 4_4:+6033661 Msa0666230:CDS
TCTGGAGATGGAAACTGCGA+CGG 0.655757 4_4:-6032364 None:intergenic
CCTCATCCTACCAGTTCCAG+TGG 0.656605 4_4:-6032638 None:intergenic
CAGGTACTGAAGCTGCACCC+AGG 0.673244 4_4:+6033653 Msa0666230:intron
GCTTCGTCTACATACAACAA+TGG 0.682607 4_4:+6032171 Msa0666230:exon
GTGCCTCGCAGATTCAAGAG+TGG 0.690811 4_4:+6032673 Msa0666230:CDS
AATCCACTCTTGAATCTGCG+AGG 0.695196 4_4:-6032676 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAGAAAAAAAACT+GGG + chr4_4:6032030-6032049 Msa0666230:five_prime_UTR 10.0%
!!! AAAATTTGAATTTTGAATTT+GGG + chr4_4:6032558-6032577 Msa0666230:intron 10.0%
!!! TTCTAGAATTATTATTTTTT+TGG + chr4_4:6032877-6032896 Msa0666230:intron 10.0%
!!! CGTTAAATTATTTTTATATA+TGG + chr4_4:6033178-6033197 Msa0666230:intron 10.0%
!! AAATTTATAGAAAAAAAACT+GGG + chr4_4:6032030-6032049 Msa0666230:five_prime_UTR 10.0%
!!! AAAATTTGAATTTTGAATTT+GGG + chr4_4:6032558-6032577 Msa0666230:intron 10.0%
!!! TTCTAGAATTATTATTTTTT+TGG + chr4_4:6032877-6032896 Msa0666230:intron 10.0%
!!! CGTTAAATTATTTTTATATA+TGG + chr4_4:6033178-6033197 Msa0666230:intron 10.0%
!! CAAATTTATAGAAAAAAAAC+TGG + chr4_4:6032029-6032048 Msa0666230:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_4:6032094-6032113 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_4:6032095-6032114 None:intergenic 15.0%
!!! TTCTTTCGATTTTTTTAAAA+TGG + chr4_4:6032440-6032459 Msa0666230:intron 15.0%
!!! TCTTTCGATTTTTTTAAAAT+GGG + chr4_4:6032441-6032460 Msa0666230:intron 15.0%
!!! CAAAATTTGAATTTTGAATT+TGG + chr4_4:6032557-6032576 Msa0666230:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_4:6033248-6033267 Msa0666230:intron 15.0%
!!! ATTTTTACATGTTTTACTAT+AGG + chr4_4:6033434-6033453 Msa0666230:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_4:6033811-6033830 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_4:6033812-6033831 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG - chr4_4:6033920-6033939 None:intergenic 15.0%
!! CAAATTTATAGAAAAAAAAC+TGG + chr4_4:6032029-6032048 Msa0666230:five_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG - chr4_4:6032094-6032113 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG - chr4_4:6032095-6032114 None:intergenic 15.0%
!!! TTCTTTCGATTTTTTTAAAA+TGG + chr4_4:6032440-6032459 Msa0666230:intron 15.0%
!!! TCTTTCGATTTTTTTAAAAT+GGG + chr4_4:6032441-6032460 Msa0666230:intron 15.0%
!!! CAAAATTTGAATTTTGAATT+TGG + chr4_4:6032557-6032576 Msa0666230:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG + chr4_4:6033248-6033267 Msa0666230:intron 15.0%
!!! ATTTTTACATGTTTTACTAT+AGG + chr4_4:6033434-6033453 Msa0666230:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG - chr4_4:6033811-6033830 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG - chr4_4:6033812-6033831 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG - chr4_4:6033920-6033939 None:intergenic 15.0%
!!! GTTTTTTGTGTTTAGATTTA+GGG + chr4_4:6032482-6032501 Msa0666230:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_4:6032526-6032545 Msa0666230:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_4:6032527-6032546 Msa0666230:intron 20.0%
!! ATTTAATTGATTGATCAATC+TGG + chr4_4:6032847-6032866 Msa0666230:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG + chr4_4:6033634-6033653 Msa0666230:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_4:6033826-6033845 Msa0666230:three_prime_UTR 20.0%
!!! GTTTTTTGTGTTTAGATTTA+GGG + chr4_4:6032482-6032501 Msa0666230:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG + chr4_4:6032526-6032545 Msa0666230:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG + chr4_4:6032527-6032546 Msa0666230:intron 20.0%
!! ATTTAATTGATTGATCAATC+TGG + chr4_4:6032847-6032866 Msa0666230:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG + chr4_4:6033634-6033653 Msa0666230:intron 20.0%
!! TTTAATTATGTTACAATGTC+AGG + chr4_4:6033826-6033845 Msa0666230:three_prime_UTR 20.0%
!!! TCATTGATTCAATTCAAGTA+AGG - chr4_4:6032270-6032289 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG + chr4_4:6032277-6032296 Msa0666230:intron 25.0%
!! TTGAATCAATGATTTTTGCA+GGG + chr4_4:6032278-6032297 Msa0666230:intron 25.0%
!!! CGTTTTTTGTGTTTAGATTT+AGG + chr4_4:6032481-6032500 Msa0666230:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG + chr4_4:6032988-6033007 Msa0666230:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG - chr4_4:6033018-6033037 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_4:6033260-6033279 None:intergenic 25.0%
!!! TTGGTTGATAAGTTCAAATA+AGG + chr4_4:6033306-6033325 Msa0666230:intron 25.0%
! ATTCACTTAAAACAGAGATT+TGG - chr4_4:6033478-6033497 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_4:6033593-6033612 Msa0666230:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_4:6033742-6033761 Msa0666230:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_4:6033743-6033762 Msa0666230:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_4:6033744-6033763 Msa0666230:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_4:6033867-6033886 Msa0666230:three_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG - chr4_4:6033912-6033931 None:intergenic 25.0%
!!! TCATTGATTCAATTCAAGTA+AGG - chr4_4:6032270-6032289 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG + chr4_4:6032277-6032296 Msa0666230:intron 25.0%
!! TTGAATCAATGATTTTTGCA+GGG + chr4_4:6032278-6032297 Msa0666230:intron 25.0%
!!! CGTTTTTTGTGTTTAGATTT+AGG + chr4_4:6032481-6032500 Msa0666230:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG + chr4_4:6032988-6033007 Msa0666230:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG - chr4_4:6033018-6033037 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG - chr4_4:6033260-6033279 None:intergenic 25.0%
!!! TTGGTTGATAAGTTCAAATA+AGG + chr4_4:6033306-6033325 Msa0666230:intron 25.0%
! ATTCACTTAAAACAGAGATT+TGG - chr4_4:6033478-6033497 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG + chr4_4:6033593-6033612 Msa0666230:intron 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG + chr4_4:6033742-6033761 Msa0666230:three_prime_UTR 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG + chr4_4:6033743-6033762 Msa0666230:three_prime_UTR 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG + chr4_4:6033744-6033763 Msa0666230:three_prime_UTR 25.0%
! TGTTAAATGAGAATTTGAGT+TGG + chr4_4:6033867-6033886 Msa0666230:three_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG - chr4_4:6033912-6033931 None:intergenic 25.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_4:6032087-6032106 None:intergenic 30.0%
TCAAACATTGGAATGAAACT+GGG - chr4_4:6032246-6032265 None:intergenic 30.0%
ATCAAACATTGGAATGAAAC+TGG - chr4_4:6032247-6032266 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG - chr4_4:6032258-6032277 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_4:6032494-6032513 Msa0666230:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_4:6032590-6032609 Msa0666230:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG + chr4_4:6033011-6033030 Msa0666230:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG + chr4_4:6033028-6033047 Msa0666230:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG + chr4_4:6033029-6033048 Msa0666230:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_4:6033339-6033358 Msa0666230:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_4:6033346-6033365 Msa0666230:intron 30.0%
! CTTTTGTTAGCATGATTGTA+TGG + chr4_4:6033554-6033573 Msa0666230:intron 30.0%
!! TATGAACTCAAATGGGTTTT+CGG - chr4_4:6032087-6032106 None:intergenic 30.0%
TCAAACATTGGAATGAAACT+GGG - chr4_4:6032246-6032265 None:intergenic 30.0%
ATCAAACATTGGAATGAAAC+TGG - chr4_4:6032247-6032266 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG - chr4_4:6032258-6032277 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG + chr4_4:6032494-6032513 Msa0666230:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG + chr4_4:6032590-6032609 Msa0666230:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG + chr4_4:6033011-6033030 Msa0666230:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG + chr4_4:6033028-6033047 Msa0666230:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG + chr4_4:6033029-6033048 Msa0666230:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG + chr4_4:6033339-6033358 Msa0666230:intron 30.0%
AATTTAGATCAGTTGGATCT+TGG + chr4_4:6033346-6033365 Msa0666230:intron 30.0%
! CTTTTGTTAGCATGATTGTA+TGG + chr4_4:6033554-6033573 Msa0666230:intron 30.0%
AAAAAAACTGGGCCACATTA+AGG + chr4_4:6032041-6032060 Msa0666230:five_prime_UTR 35.0%
TTTACATATGGGCCTTAATG+TGG - chr4_4:6032056-6032075 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_4:6032067-6032086 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_4:6032068-6032087 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_4:6032086-6032105 None:intergenic 35.0%
CAAACATTGGAATGAAACTG+GGG - chr4_4:6032245-6032264 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG + chr4_4:6032283-6032302 Msa0666230:intron 35.0%
! CAATGATTTTTGCAGGGTAA+GGG + chr4_4:6032284-6032303 Msa0666230:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_4:6032500-6032519 Msa0666230:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG - chr4_4:6032733-6032752 None:intergenic 35.0%
TAAGCTGTATATCCAATGCA+GGG - chr4_4:6033090-6033109 None:intergenic 35.0%
ATAAGCTGTATATCCAATGC+AGG - chr4_4:6033091-6033110 None:intergenic 35.0%
CAAGTTCTCACAACTTATGT+TGG + chr4_4:6033287-6033306 Msa0666230:intron 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_4:6033336-6033355 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG + chr4_4:6033356-6033375 Msa0666230:intron 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_4:6033701-6033720 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_4:6033706-6033725 Msa0666230:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_4:6033707-6033726 Msa0666230:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_4:6033722-6033741 Msa0666230:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_4:6033749-6033768 Msa0666230:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_4:6033792-6033811 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG + chr4_4:6033936-6033955 Msa0666230:three_prime_UTR 35.0%
AAAAAAACTGGGCCACATTA+AGG + chr4_4:6032041-6032060 Msa0666230:five_prime_UTR 35.0%
TTTACATATGGGCCTTAATG+TGG - chr4_4:6032056-6032075 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG - chr4_4:6032067-6032086 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG - chr4_4:6032068-6032087 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG - chr4_4:6032086-6032105 None:intergenic 35.0%
CAAACATTGGAATGAAACTG+GGG - chr4_4:6032245-6032264 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG + chr4_4:6032283-6032302 Msa0666230:intron 35.0%
! CAATGATTTTTGCAGGGTAA+GGG + chr4_4:6032284-6032303 Msa0666230:intron 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG + chr4_4:6032500-6032519 Msa0666230:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG - chr4_4:6032733-6032752 None:intergenic 35.0%
TAAGCTGTATATCCAATGCA+GGG - chr4_4:6033090-6033109 None:intergenic 35.0%
ATAAGCTGTATATCCAATGC+AGG - chr4_4:6033091-6033110 None:intergenic 35.0%
CAAGTTCTCACAACTTATGT+TGG + chr4_4:6033287-6033306 Msa0666230:intron 35.0%
GATCTAAATTAGAACCTGCA+TGG - chr4_4:6033336-6033355 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG + chr4_4:6033356-6033375 Msa0666230:intron 35.0%
AAGCAATGTTCCAAAGACTT+AGG - chr4_4:6033701-6033720 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG + chr4_4:6033706-6033725 Msa0666230:three_prime_UTR 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG + chr4_4:6033707-6033726 Msa0666230:three_prime_UTR 35.0%
TTGCTGGGCTAATTAATGAT+AGG + chr4_4:6033722-6033741 Msa0666230:three_prime_UTR 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG + chr4_4:6033749-6033768 Msa0666230:three_prime_UTR 35.0%
AGGGAAATGAAAACAACAGA+TGG - chr4_4:6033792-6033811 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG + chr4_4:6033936-6033955 Msa0666230:three_prime_UTR 35.0%
TTAACGCAGTCTCTCTGATT+AGG + chr4_4:6032125-6032144 Msa0666230:five_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG + chr4_4:6032126-6032145 Msa0666230:five_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG + chr4_4:6032171-6032190 Msa0666230:exon 40.0%
! TTGGAATGAAACTGGGGTTT+TGG - chr4_4:6032239-6032258 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_4:6032600-6032619 Msa0666230:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_4:6032685-6032704 Msa0666230:CDS 40.0%
TCAAATAAGGCAATCCATGC+AGG + chr4_4:6033319-6033338 Msa0666230:intron 40.0%
TTAACGCAGTCTCTCTGATT+AGG + chr4_4:6032125-6032144 Msa0666230:five_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG + chr4_4:6032126-6032145 Msa0666230:five_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG + chr4_4:6032171-6032190 Msa0666230:exon 40.0%
! TTGGAATGAAACTGGGGTTT+TGG - chr4_4:6032239-6032258 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG + chr4_4:6032600-6032619 Msa0666230:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG + chr4_4:6032685-6032704 Msa0666230:CDS 40.0%
TCAAATAAGGCAATCCATGC+AGG + chr4_4:6033319-6033338 Msa0666230:intron 40.0%
!!! AAACTGGGGTTTTGGATCGA+AGG - chr4_4:6032231-6032250 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_4:6032290-6032309 Msa0666230:intron 45.0%
GGTAAGGGAACAGGTAGTTT+CGG + chr4_4:6032299-6032318 Msa0666230:CDS 45.0%
CAGGTAGTTTCGGTAAGAGA+AGG + chr4_4:6032309-6032328 Msa0666230:CDS 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_4:6032608-6032627 Msa0666230:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_4:6032622-6032641 Msa0666230:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_4:6032679-6032698 None:intergenic 45.0%
CAATGATCAAGTCCCTGCAT+TGG + chr4_4:6033075-6033094 Msa0666230:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_4:6033688-6033707 Msa0666230:exon 45.0%
!!! AAACTGGGGTTTTGGATCGA+AGG - chr4_4:6032231-6032250 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG + chr4_4:6032290-6032309 Msa0666230:intron 45.0%
GGTAAGGGAACAGGTAGTTT+CGG + chr4_4:6032299-6032318 Msa0666230:CDS 45.0%
CAGGTAGTTTCGGTAAGAGA+AGG + chr4_4:6032309-6032328 Msa0666230:CDS 45.0%
ACTGGAGTGAGAAGGCTATT+AGG + chr4_4:6032608-6032627 Msa0666230:CDS 45.0%
GCTATTAGGAGAAAGACCAC+TGG + chr4_4:6032622-6032641 Msa0666230:CDS 45.0%
AATCCACTCTTGAATCTGCG+AGG - chr4_4:6032679-6032698 None:intergenic 45.0%
CAATGATCAAGTCCCTGCAT+TGG + chr4_4:6033075-6033094 Msa0666230:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG + chr4_4:6033688-6033707 Msa0666230:exon 45.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_4:6032367-6032386 None:intergenic 50.0%
ATTTCCTGACACGTGCAGCT+GGG - chr4_4:6032415-6032434 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_4:6032628-6032647 Msa0666230:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_4:6032632-6032651 Msa0666230:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_4:6032647-6032666 Msa0666230:CDS 50.0%
!! AACACGTGACTTGAGTTGGC+CGG + chr4_4:6033940-6033959 Msa0666230:three_prime_UTR 50.0%
TCTGGAGATGGAAACTGCGA+CGG - chr4_4:6032367-6032386 None:intergenic 50.0%
ATTTCCTGACACGTGCAGCT+GGG - chr4_4:6032415-6032434 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG + chr4_4:6032628-6032647 Msa0666230:CDS 50.0%
GAAAGACCACTGGAACTGGT+AGG + chr4_4:6032632-6032651 Msa0666230:CDS 50.0%
! CTGGTAGGATGAGGTACTTG+AGG + chr4_4:6032647-6032666 Msa0666230:CDS 50.0%
GAAGCAGAAGCAGAAGCAGG+TGG - chr4_4:6032156-6032175 None:intergenic 55.0%
GACGAAGCAGAAGCAGAAGC+AGG - chr4_4:6032159-6032178 None:intergenic 55.0%
ACACCTGACGCAGAGTGTGT+GGG - chr4_4:6032342-6032361 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_4:6032379-6032398 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_4:6032385-6032404 None:intergenic 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_4:6032416-6032435 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_4:6032641-6032660 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_4:6032638-6032657 Msa0666230:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_4:6032673-6032692 Msa0666230:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_4:6033660-6033679 Msa0666230:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_4:6033661-6033680 Msa0666230:CDS 55.0%
!! ACACGTGACTTGAGTTGGCC+GGG + chr4_4:6033941-6033960 Msa0666230:three_prime_UTR 55.0%
GAAGCAGAAGCAGAAGCAGG+TGG - chr4_4:6032156-6032175 None:intergenic 55.0%
GACGAAGCAGAAGCAGAAGC+AGG - chr4_4:6032159-6032178 None:intergenic 55.0%
ACACCTGACGCAGAGTGTGT+GGG - chr4_4:6032342-6032361 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG - chr4_4:6032379-6032398 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG - chr4_4:6032385-6032404 None:intergenic 55.0%
CATTTCCTGACACGTGCAGC+TGG - chr4_4:6032416-6032435 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG - chr4_4:6032641-6032660 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG + chr4_4:6032638-6032657 Msa0666230:CDS 55.0%
GTGCCTCGCAGATTCAAGAG+TGG + chr4_4:6032673-6032692 Msa0666230:CDS 55.0%
TGAAGCTGCACCCAGGAACA+AGG + chr4_4:6033660-6033679 Msa0666230:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG + chr4_4:6033661-6033680 Msa0666230:CDS 55.0%
AGACCCACACACTCTGCGTC+AGG + chr4_4:6032336-6032355 Msa0666230:CDS 60.0%
CACACCTGACGCAGAGTGTG+TGG - chr4_4:6032343-6032362 None:intergenic 60.0%
CACACACTCTGCGTCAGGTG+TGG + chr4_4:6032341-6032360 Msa0666230:CDS 60.0%
CTTACCCAGCTGCACGTGTC+AGG + chr4_4:6032408-6032427 Msa0666230:CDS 60.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_4:6033655-6033674 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_4:6033653-6033672 Msa0666230:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_4:6033673-6033692 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_4:6033674-6033693 None:intergenic 60.0%
AGACCCACACACTCTGCGTC+AGG + chr4_4:6032336-6032355 Msa0666230:CDS 60.0%
CACACCTGACGCAGAGTGTG+TGG - chr4_4:6032343-6032362 None:intergenic 60.0%
CACACACTCTGCGTCAGGTG+TGG + chr4_4:6032341-6032360 Msa0666230:CDS 60.0%
CTTACCCAGCTGCACGTGTC+AGG + chr4_4:6032408-6032427 Msa0666230:CDS 60.0%
CTGGGTGCAGCTTCAGTACC+TGG - chr4_4:6033655-6033674 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG + chr4_4:6033653-6033672 Msa0666230:intron 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG - chr4_4:6033673-6033692 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG - chr4_4:6033674-6033693 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 6032022 6033962 6032022 ID=Msa0666230;Name=Msa0666230
chr4_4 mRNA 6032022 6033962 6032022 ID=Msa0666230-mRNA-1;Parent=Msa0666230;Name=Msa0666230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=168|1|1|1|1|1|4|260|95
chr4_4 exon 6032022 6032192 6032022 ID=Msa0666230-mRNA-1:exon:1952;Parent=Msa0666230-mRNA-1
chr4_4 exon 6032299 6032434 6032299 ID=Msa0666230-mRNA-1:exon:1953;Parent=Msa0666230-mRNA-1
chr4_4 exon 6032605 6032706 6032605 ID=Msa0666230-mRNA-1:exon:1954;Parent=Msa0666230-mRNA-1
chr4_4 exon 6033656 6033962 6033656 ID=Msa0666230-mRNA-1:exon:1955;Parent=Msa0666230-mRNA-1
chr4_4 five_prime_UTR 6032022 6032189 6032022 ID=Msa0666230-mRNA-1:five_prime_utr;Parent=Msa0666230-mRNA-1
chr4_4 CDS 6032190 6032192 6032190 ID=Msa0666230-mRNA-1:cds;Parent=Msa0666230-mRNA-1
chr4_4 CDS 6032299 6032434 6032299 ID=Msa0666230-mRNA-1:cds;Parent=Msa0666230-mRNA-1
chr4_4 CDS 6032605 6032706 6032605 ID=Msa0666230-mRNA-1:cds;Parent=Msa0666230-mRNA-1
chr4_4 CDS 6033656 6033702 6033656 ID=Msa0666230-mRNA-1:cds;Parent=Msa0666230-mRNA-1
chr4_4 three_prime_UTR 6033703 6033962 6033703 ID=Msa0666230-mRNA-1:three_prime_utr;Parent=Msa0666230-mRNA-1
Gene Sequence

>Msa0666230

ATGGGTAAGGGAACAGGTAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGCGTCAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTACCCAGCTGCACGTGTCAGGAAATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>Msa0666230

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST*