AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187930 MtrunA17_Chr2g0285451 100.000 69 0 0 37 105 1 69 1.58e-44 138
Msa0187930 MtrunA17_Chr4g0033761 94.203 69 4 0 37 105 1 69 4.16e-42 132
Msa0187930 MtrunA17_Chr8g0376751 89.855 69 7 0 37 105 1 69 1.03e-39 126
Msa0187930 MtrunA17_Chr7g0216191 86.957 69 9 0 37 105 1 69 8.16e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187930 AT2G43460.1 91.304 69 6 0 37 105 1 69 1.20e-40 129
Msa0187930 AT3G59540.1 91.304 69 6 0 37 105 1 69 1.20e-40 129

Find 39 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 2_1:-2742047 Msa0187930:CDS
TTCTCTCCATTTCATCCATT+TGG 0.273233 2_1:+2740059 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 2_1:-2740945 Msa0187930:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 2_1:-2740206 Msa0187930:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 2_1:-2739883 Msa0187930:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 2_1:-2740065 Msa0187930:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 2_1:-2742046 Msa0187930:CDS
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 2_1:-2740212 Msa0187930:exon
AAAGAACTACGAAAACGTTT+AGG 0.375594 2_1:-2742053 Msa0187930:CDS
TGACCTCGCATCCTTCCTTC+TGG 0.376233 2_1:+2740907 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 2_1:-2740001 Msa0187930:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 2_1:+2740079 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 2_1:-2740074 Msa0187930:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 2_1:+2740199 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 2_1:-2741986 Msa0187930:intron
GAGTTAAGATCCTCTCCATT+TGG 0.475407 2_1:+2740034 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 2_1:-2740885 Msa0187930:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 2_1:-2740192 Msa0187930:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 2_1:-2740867 Msa0187930:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 2_1:-2740094 Msa0187930:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 2_1:-2740049 Msa0187930:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 2_1:-2740862 Msa0187930:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 2_1:-2740879 Msa0187930:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 2_1:+2740835 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 2_1:+2740947 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 2_1:-2740918 Msa0187930:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 2_1:-2740785 Msa0187930:intron
AGAGATATAGATCCATTTGG+AGG 0.564353 2_1:+2740082 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 2_1:+2740918 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 2_1:-2740112 Msa0187930:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 2_1:+2741979 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 2_1:-2740922 Msa0187930:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 2_1:-2740007 Msa0187930:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 2_1:-2740892 Msa0187930:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 2_1:-2740044 Msa0187930:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 2_1:-2740910 Msa0187930:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 2_1:+2740828 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 2_1:-2740187 Msa0187930:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 2_1:-2742035 Msa0187930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAATATAAAAT+GGG + chr2_1:2740107-2740126 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG + chr2_1:2740108-2740127 None:intergenic 0.0%
!! AATTAATAAAAATATAAAAT+GGG + chr2_1:2740107-2740126 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG + chr2_1:2740108-2740127 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_1:2739980-2739999 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_1:2740045-2740064 Msa0187930:three_prime_UTR 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG - chr2_1:2740149-2740168 Msa0187930:three_prime_UTR 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_1:2740882-2740901 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_1:2741187-2741206 Msa0187930:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_1:2741374-2741393 Msa0187930:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_1:2739980-2739999 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_1:2740045-2740064 Msa0187930:three_prime_UTR 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG - chr2_1:2740149-2740168 Msa0187930:three_prime_UTR 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_1:2740882-2740901 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_1:2741187-2741206 Msa0187930:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_1:2741374-2741393 Msa0187930:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_1:2739979-2739998 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_1:2739981-2740000 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_1:2740252-2740271 Msa0187930:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_1:2740253-2740272 Msa0187930:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_1:2740301-2740320 Msa0187930:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_1:2740657-2740676 Msa0187930:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_1:2741226-2741245 Msa0187930:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_1:2741535-2741554 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_1:2741545-2741564 None:intergenic 20.0%
!!! AATCCATTTTAATTTTCCAA+AGG + chr2_1:2741606-2741625 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_1:2741635-2741654 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_1:2739979-2739998 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_1:2739981-2740000 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_1:2740252-2740271 Msa0187930:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_1:2740253-2740272 Msa0187930:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_1:2740301-2740320 Msa0187930:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_1:2740657-2740676 Msa0187930:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_1:2741226-2741245 Msa0187930:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_1:2741535-2741554 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_1:2741545-2741564 None:intergenic 20.0%
!!! AATCCATTTTAATTTTCCAA+AGG + chr2_1:2741606-2741625 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_1:2741635-2741654 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_1:2739978-2739997 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_1:2740617-2740636 Msa0187930:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_1:2740659-2740678 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_1:2740656-2740675 Msa0187930:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_1:2741252-2741271 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_1:2741253-2741272 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_1:2741501-2741520 Msa0187930:intron 25.0%
!! CTTCCTTTGGAAAATTAAAA+TGG - chr2_1:2741600-2741619 Msa0187930:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_1:2741636-2741655 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_1:2741646-2741665 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_1:2741959-2741978 Msa0187930:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_1:2741978-2741997 Msa0187930:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_1:2742041-2742060 Msa0187930:CDS 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_1:2739978-2739997 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_1:2740617-2740636 Msa0187930:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_1:2740659-2740678 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_1:2740656-2740675 Msa0187930:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_1:2741252-2741271 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_1:2741253-2741272 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_1:2741501-2741520 Msa0187930:intron 25.0%
!! CTTCCTTTGGAAAATTAAAA+TGG - chr2_1:2741600-2741619 Msa0187930:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_1:2741636-2741655 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_1:2741646-2741665 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_1:2741959-2741978 Msa0187930:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_1:2741978-2741997 Msa0187930:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_1:2742041-2742060 Msa0187930:CDS 25.0%
AAAGAACTACGAAAACGTTT+AGG - chr2_1:2739871-2739890 Msa0187930:three_prime_UTR 30.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_1:2739878-2739897 Msa0187930:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_1:2740328-2740347 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_1:2740329-2740348 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_1:2740504-2740523 Msa0187930:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_1:2740521-2740540 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_1:2740519-2740538 Msa0187930:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_1:2740719-2740738 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_1:2740753-2740772 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_1:2740754-2740773 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_1:2740980-2740999 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_1:2740979-2740998 Msa0187930:intron 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_1:2741216-2741235 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_1:2741490-2741509 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_1:2741502-2741521 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_1:2741527-2741546 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_1:2741528-2741547 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_1:2741558-2741577 Msa0187930:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_1:2741811-2741830 Msa0187930:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_1:2741812-2741831 Msa0187930:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_1:2741938-2741957 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_1:2741977-2741996 Msa0187930:intron 30.0%
AAAGAACTACGAAAACGTTT+AGG - chr2_1:2739871-2739890 Msa0187930:three_prime_UTR 30.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_1:2739878-2739897 Msa0187930:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_1:2740328-2740347 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_1:2740329-2740348 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_1:2740504-2740523 Msa0187930:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_1:2740521-2740540 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_1:2740519-2740538 Msa0187930:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_1:2740719-2740738 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_1:2740753-2740772 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_1:2740754-2740773 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_1:2740980-2740999 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_1:2740979-2740998 Msa0187930:intron 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_1:2741216-2741235 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_1:2741490-2741509 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_1:2741502-2741521 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_1:2741527-2741546 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_1:2741528-2741547 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_1:2741558-2741577 Msa0187930:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_1:2741811-2741830 Msa0187930:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_1:2741812-2741831 Msa0187930:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_1:2741938-2741957 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_1:2741977-2741996 Msa0187930:intron 30.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_1:2739877-2739896 Msa0187930:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_1:2739889-2739908 Msa0187930:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_1:2739948-2739967 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_1:2740186-2740205 Msa0187930:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_1:2740187-2740206 Msa0187930:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_1:2741057-2741076 Msa0187930:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_1:2741465-2741484 None:intergenic 35.0%
GTTTCTTCTATGTCTTCCTT+TGG - chr2_1:2741587-2741606 Msa0187930:intron 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_1:2741687-2741706 Msa0187930:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_1:2741718-2741737 Msa0187930:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_1:2741728-2741747 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_1:2741732-2741751 Msa0187930:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_1:2741845-2741864 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_1:2741848-2741867 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_1:2741850-2741869 Msa0187930:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_1:2741859-2741878 Msa0187930:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_1:2741868-2741887 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_1:2741875-2741894 Msa0187930:intron 35.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_1:2739877-2739896 Msa0187930:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_1:2739889-2739908 Msa0187930:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_1:2739948-2739967 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_1:2740186-2740205 Msa0187930:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_1:2740187-2740206 Msa0187930:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_1:2741057-2741076 Msa0187930:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_1:2741465-2741484 None:intergenic 35.0%
GTTTCTTCTATGTCTTCCTT+TGG - chr2_1:2741587-2741606 Msa0187930:intron 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_1:2741687-2741706 Msa0187930:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_1:2741718-2741737 Msa0187930:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_1:2741728-2741747 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_1:2741732-2741751 Msa0187930:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_1:2741845-2741864 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_1:2741848-2741867 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_1:2741850-2741869 Msa0187930:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_1:2741859-2741878 Msa0187930:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_1:2741868-2741887 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_1:2741875-2741894 Msa0187930:intron 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_1:2740197-2740216 Msa0187930:exon 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_1:2741039-2741058 Msa0187930:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_1:2741045-2741064 Msa0187930:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_1:2741062-2741081 Msa0187930:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_1:2741092-2741111 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_1:2741099-2741118 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_1:2741160-2741179 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_1:2741207-2741226 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_1:2741712-2741731 Msa0187930:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_1:2741737-2741756 Msa0187930:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_1:2741830-2741849 Msa0187930:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_1:2741893-2741912 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_1:2741917-2741936 Msa0187930:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_1:2741923-2741942 Msa0187930:intron 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_1:2740197-2740216 Msa0187930:exon 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_1:2741039-2741058 Msa0187930:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_1:2741045-2741064 Msa0187930:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_1:2741062-2741081 Msa0187930:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_1:2741092-2741111 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_1:2741099-2741118 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_1:2741160-2741179 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_1:2741207-2741226 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_1:2741712-2741731 Msa0187930:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_1:2741737-2741756 Msa0187930:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_1:2741830-2741849 Msa0187930:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_1:2741893-2741912 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_1:2741917-2741936 Msa0187930:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_1:2741923-2741942 Msa0187930:intron 40.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_1:2740316-2740335 Msa0187930:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_1:2740737-2740756 Msa0187930:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_1:2741002-2741021 Msa0187930:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_1:2741139-2741158 Msa0187930:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_1:2741157-2741176 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_1:2741523-2741542 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_1:2741880-2741899 Msa0187930:intron 45.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_1:2740316-2740335 Msa0187930:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_1:2740737-2740756 Msa0187930:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_1:2741002-2741021 Msa0187930:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_1:2741139-2741158 Msa0187930:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_1:2741157-2741176 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_1:2741523-2741542 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_1:2741880-2741899 Msa0187930:intron 45.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_1:2739938-2739957 Msa0187930:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_1:2741032-2741051 Msa0187930:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_1:2741150-2741169 Msa0187930:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_1:2739938-2739957 Msa0187930:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_1:2741032-2741051 Msa0187930:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_1:2741150-2741169 Msa0187930:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_1:2741009-2741028 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_1:2741006-2741025 Msa0187930:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_1:2741020-2741039 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_1:2741009-2741028 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_1:2741006-2741025 Msa0187930:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_1:2741020-2741039 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_1:2741014-2741033 Msa0187930:intron 60.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_1:2741014-2741033 Msa0187930:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2739849 2742097 2739849 ID=Msa0187930;Name=Msa0187930
chr2_1 mRNA 2739849 2742097 2739849 ID=Msa0187930-mRNA-1;Parent=Msa0187930;Name=Msa0187930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|366|105
chr2_1 exon 2739849 2740237 2739849 ID=Msa0187930-mRNA-1:exon:1260;Parent=Msa0187930-mRNA-1
chr2_1 exon 2740786 2740969 2740786 ID=Msa0187930-mRNA-1:exon:1259;Parent=Msa0187930-mRNA-1
chr2_1 exon 2741987 2742097 2741987 ID=Msa0187930-mRNA-1:exon:1258;Parent=Msa0187930-mRNA-1
chr2_1 CDS 2741987 2742097 2741987 ID=Msa0187930-mRNA-1:cds;Parent=Msa0187930-mRNA-1
chr2_1 CDS 2740786 2740969 2740786 ID=Msa0187930-mRNA-1:cds;Parent=Msa0187930-mRNA-1
chr2_1 CDS 2740215 2740237 2740215 ID=Msa0187930-mRNA-1:cds;Parent=Msa0187930-mRNA-1
chr2_1 three_prime_UTR 2739849 2740214 2739849 ID=Msa0187930-mRNA-1:three_prime_utr;Parent=Msa0187930-mRNA-1
Gene Sequence

>Msa0187930

ATGGGTATTTTTCGGGGAAATCAAAGAACTACGAAAACGTTTAGGATTAGGGTTTATCAGCGGCAGCAACATTTCACACTTCGTTCGAACTCACTGCCTCTTGCAACAATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa0187930

MGIFRGNQRTTKTFRIRVYQRQQHFTLRSNSLPLATMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*