Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080580 | AES61472.2 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080580 | sp|Q9FP29|KNOS1_ORYSJ | 58.268 | 254 | 99 | 3 | 12 | 262 | 38 | 287 | 2.94e-90 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080580 | G7I9I1 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0080580 | TF | HB-KNOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0080580 | 0.802996 | 4.302835e-49 | -8.615850e-47 |
| Msa0017670 | Msa0080580 | 0.820699 | 5.974444e-53 | -8.615850e-47 |
| Msa0080580 | Msa0098040 | 0.824775 | 6.724084e-54 | -8.615850e-47 |
| Msa0080580 | Msa0186010 | 0.947903 | 2.711406e-106 | -8.615850e-47 |
| Msa0080580 | Msa0197100 | 0.814800 | 1.280820e-51 | -8.615850e-47 |
| Msa0080580 | Msa0239030 | 0.821505 | 3.897044e-53 | -8.615850e-47 |
| Msa0080580 | Msa0244640 | 0.800270 | 1.559544e-48 | -8.615850e-47 |
| Msa0080580 | Msa0276740 | 0.824096 | 9.711749e-54 | -8.615850e-47 |
| Msa0080580 | Msa0298410 | 0.825022 | 5.880574e-54 | -8.615850e-47 |
| Msa0080580 | Msa0307670 | 0.809459 | 1.872795e-50 | -8.615850e-47 |
| Msa0080580 | Msa0316680 | 0.808664 | 2.771285e-50 | -8.615850e-47 |
| Msa0080580 | Msa0762910 | 0.801848 | 7.417297e-49 | -8.615850e-47 |
| Msa0080580 | Msa0770330 | 0.800339 | 1.509515e-48 | -8.615850e-47 |
| Msa0080580 | Msa0792370 | 0.806442 | 8.210207e-50 | -8.615850e-47 |
| Msa0080580 | Msa0805330 | 0.817444 | 3.287434e-52 | -8.615850e-47 |
| Msa0080580 | Msa0842680 | 0.812459 | 4.194979e-51 | -8.615850e-47 |
| Msa0080580 | Msa1087650 | 0.951346 | 2.477708e-109 | -8.615850e-47 |
| Msa0080580 | Msa1228200 | 0.809992 | 1.438454e-50 | -8.615850e-47 |
| Msa0080580 | Msa1267770 | 0.802887 | 4.533266e-49 | -8.615850e-47 |
| Msa0080580 | Msa1357790 | 0.908021 | 2.692563e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080580 | MtrunA17_Chr1g0192791 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 544 |
| Msa0080580 | MtrunA17_Chr5g0413201 | 53.307 | 257 | 104 | 4 | 9 | 259 | 63 | 309 | 8.64e-84 | 253 |
| Msa0080580 | MtrunA17_Chr1g0151961 | 48.810 | 252 | 116 | 4 | 18 | 264 | 119 | 362 | 1.69e-70 | 221 |
| Msa0080580 | MtrunA17_Chr5g0439391 | 48.996 | 249 | 102 | 4 | 19 | 259 | 47 | 278 | 4.25e-68 | 213 |
| Msa0080580 | MtrunA17_Chr2g0289201 | 50.617 | 243 | 106 | 4 | 18 | 256 | 117 | 349 | 4.42e-66 | 210 |
| Msa0080580 | MtrunA17_Chr3g0137241 | 35.249 | 261 | 122 | 8 | 19 | 244 | 107 | 355 | 1.96e-37 | 135 |
| Msa0080580 | MtrunA17_Chr1g0149651 | 34.538 | 249 | 138 | 6 | 19 | 244 | 174 | 420 | 2.16e-37 | 136 |
| Msa0080580 | MtrunA17_Chr5g0398181 | 33.597 | 253 | 145 | 4 | 15 | 244 | 24 | 276 | 1.49e-36 | 131 |
| Msa0080580 | MtrunA17_Chr4g0065241 | 33.065 | 248 | 147 | 4 | 16 | 244 | 68 | 315 | 2.77e-36 | 131 |
| Msa0080580 | MtrunA17_Chr2g0305101 | 34.274 | 248 | 138 | 6 | 19 | 244 | 95 | 339 | 3.37e-35 | 129 |
| Msa0080580 | MtrunA17_Chr6g0479181 | 34.906 | 106 | 67 | 1 | 15 | 120 | 64 | 167 | 8.26e-13 | 65.5 |
| Msa0080580 | MtrunA17_Chr7g0240371 | 38.356 | 73 | 43 | 1 | 174 | 246 | 296 | 366 | 5.07e-11 | 62.4 |
| Msa0080580 | MtrunA17_Chr4g0008591 | 42.466 | 73 | 39 | 2 | 174 | 246 | 352 | 421 | 5.83e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080580 | AT1G23380.1 | 50.794 | 252 | 104 | 4 | 17 | 261 | 84 | 322 | 2.38e-82 | 250 |
| Msa0080580 | AT1G70510.1 | 50.201 | 249 | 110 | 3 | 17 | 261 | 68 | 306 | 9.23e-81 | 246 |
| Msa0080580 | AT1G23380.2 | 50.394 | 254 | 104 | 5 | 17 | 261 | 84 | 324 | 2.56e-80 | 245 |
| Msa0080580 | AT1G70510.2 | 49.407 | 253 | 110 | 4 | 17 | 261 | 68 | 310 | 2.47e-78 | 239 |
| Msa0080580 | AT1G62360.1 | 50.202 | 247 | 107 | 4 | 18 | 258 | 121 | 357 | 5.93e-68 | 215 |
| Msa0080580 | AT4G08150.1 | 47.581 | 248 | 116 | 5 | 18 | 258 | 134 | 374 | 1.11e-66 | 213 |
| Msa0080580 | AT1G62990.1 | 34.661 | 251 | 142 | 6 | 15 | 244 | 26 | 275 | 1.78e-39 | 139 |
| Msa0080580 | AT5G25220.2 | 35.200 | 250 | 132 | 6 | 19 | 244 | 160 | 403 | 2.50e-38 | 139 |
| Msa0080580 | AT5G25220.1 | 35.200 | 250 | 132 | 6 | 19 | 244 | 160 | 403 | 2.80e-38 | 139 |
| Msa0080580 | AT5G11060.1 | 35.156 | 256 | 124 | 8 | 19 | 244 | 124 | 367 | 1.90e-37 | 136 |
| Msa0080580 | AT4G32040.2 | 34.146 | 246 | 140 | 5 | 19 | 244 | 119 | 362 | 9.55e-37 | 134 |
| Msa0080580 | AT4G32040.1 | 34.146 | 246 | 140 | 5 | 19 | 244 | 119 | 362 | 1.14e-36 | 134 |
| Msa0080580 | AT1G75430.1 | 49.091 | 55 | 28 | 0 | 192 | 246 | 209 | 263 | 5.16e-11 | 62.4 |
| Msa0080580 | AT5G02030.1 | 46.667 | 60 | 32 | 0 | 187 | 246 | 350 | 409 | 8.75e-11 | 62.4 |
Find 95 sgRNAs with CRISPR-Local
Find 489 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTCTTCTTGAAGAAAT+AGG | 0.173162 | 1_2:-58833572 | Msa0080580:CDS |
| GAAATGCTCCTTCGTAAGTA+TGG | 0.209222 | 1_2:-58828081 | Msa0080580:CDS |
| TCTCACGGAAAGCATTATTT+TGG | 0.227729 | 1_2:+58833537 | None:intergenic |
| ATTTCTCAAGAAAAGGAAAA+AGG | 0.267954 | 1_2:-58828031 | Msa0080580:CDS |
| AGGGCATAGGCGTATTGTTC+TGG | 0.295882 | 1_2:+58827112 | None:intergenic |
| ATGATGATTAGCCTTGGATT+TGG | 0.302616 | 1_2:-58826866 | Msa0080580:three_prime_UTR |
| CTTCTCTTCTTGAAGAAATA+GGG | 0.308161 | 1_2:-58833571 | Msa0080580:CDS |
| ACAACCAATCGGATCTAATA+AGG | 0.325364 | 1_2:-58833916 | Msa0080580:CDS |
| ATATAAAGCAGATAAATAAT+TGG | 0.326164 | 1_2:-58827357 | Msa0080580:CDS |
| TTTACAGTGGGTCATATTGA+TGG | 0.357534 | 1_2:-58834021 | Msa0080580:intron |
| TTTACCTGAACGGTTGTAAT+CGG | 0.376328 | 1_2:+58833188 | None:intergenic |
| TGTTGCTTCATTGAAGGGCT+TGG | 0.378477 | 1_2:+58833275 | None:intergenic |
| ATCCATGACATTCAAGCAAA+AGG | 0.380616 | 1_2:+58827174 | None:intergenic |
| GTTTATTCTTATTCTGCTGC+TGG | 0.387145 | 1_2:-58833988 | Msa0080580:five_prime_UTR |
| AATAATGCTTTCCGTGAGAT+AGG | 0.392343 | 1_2:-58833533 | Msa0080580:CDS |
| GATAGTAGATTTGGATAAAG+AGG | 0.394577 | 1_2:+58833848 | None:intergenic |
| TCCTGACCTTGACCACTTCA+TGG | 0.397547 | 1_2:-58833504 | Msa0080580:intron |
| AAATAATGTTGCTTCATTGA+AGG | 0.405931 | 1_2:+58833269 | None:intergenic |
| AAGTTTCTTGCTAGAGGTGC+AGG | 0.408023 | 1_2:-58826896 | Msa0080580:three_prime_UTR |
| TCCAAGAAAACCTGGGGAAA+AGG | 0.408702 | 1_2:+58834554 | None:intergenic |
| TCTGCTGCTGGATTGCATCT+AGG | 0.408994 | 1_2:-58833976 | Msa0080580:five_prime_UTR |
| GACAGGAATTTCTCAAGAAA+AGG | 0.410633 | 1_2:-58828038 | Msa0080580:CDS |
| ATTTGAATTACCGTGGGATA+AGG | 0.413318 | 1_2:+58827946 | None:intergenic |
| ATTATTAGTTATCTGTTTCG+TGG | 0.419970 | 1_2:-58826998 | Msa0080580:three_prime_UTR |
| AATAATGTTGCTTCATTGAA+GGG | 0.423656 | 1_2:+58833270 | None:intergenic |
| GGATGCAAGAAAAGCATTGA+TGG | 0.424199 | 1_2:-58827995 | Msa0080580:CDS |
| ATTGGTGGAACGTCCACTAT+AGG | 0.452627 | 1_2:-58827972 | Msa0080580:CDS |
| TCATCCGATTACAACCGTTC+AGG | 0.455239 | 1_2:-58833192 | Msa0080580:intron |
| TTATTTGAACCTCAGCTAGC+TGG | 0.459048 | 1_2:+58834459 | None:intergenic |
| GCTGGGTTGGCTACAGCACC+TGG | 0.465293 | 1_2:+58834500 | None:intergenic |
| CCTCTGTAAATTTATTCTGC+AGG | 0.471764 | 1_2:-58827244 | Msa0080580:exon |
| GGGTCAGATCATGAGGCAGC+AGG | 0.476443 | 1_2:-58828204 | Msa0080580:intron |
| TTACAGAGGTCCTGCTATGC+TGG | 0.477108 | 1_2:+58827258 | None:intergenic |
| AAAAGGAAAGAGTGGAAAGC+TGG | 0.481990 | 1_2:+58834482 | None:intergenic |
| GAACCTCAGCTAGCTGGAAA+AGG | 0.482233 | 1_2:+58834465 | None:intergenic |
| ACCATGAAGTGGTCAAGGTC+AGG | 0.484448 | 1_2:+58833503 | None:intergenic |
| TGGGATAAGGCCACCTATAG+TGG | 0.485346 | 1_2:+58827959 | None:intergenic |
| TCCATGACATTCAAGCAAAA+GGG | 0.493060 | 1_2:+58827175 | None:intergenic |
| AAATGCTCCTTCGTAAGTAT+GGG | 0.496084 | 1_2:-58828080 | Msa0080580:CDS |
| GGAAAGGTTGAAGCAGTAGA+AGG | 0.497288 | 1_2:-58828156 | Msa0080580:CDS |
| ATTCCTGTCTTAAGTTGCTA+AGG | 0.503658 | 1_2:+58828052 | None:intergenic |
| CAAGAAAAGCATTGATGGAT+TGG | 0.506407 | 1_2:-58827990 | Msa0080580:CDS |
| AAAGAGGGTGAGTTGCGATC+TGG | 0.510035 | 1_2:+58833864 | None:intergenic |
| GTAAGTAGCACCAGCATAGC+AGG | 0.513299 | 1_2:-58827268 | Msa0080580:CDS |
| ATATGATATTAGCTAGGCTT+CGG | 0.529086 | 1_2:-58827153 | Msa0080580:three_prime_UTR |
| TCTAATAAGGTTGGATATGA+CGG | 0.529171 | 1_2:-58833903 | Msa0080580:CDS |
| AAAGGAAAGAGTGGAAAGCT+GGG | 0.540723 | 1_2:+58834483 | None:intergenic |
| AGAAGAGAAGCAAGTTCTGT+TGG | 0.544757 | 1_2:+58833584 | None:intergenic |
| ATAGTAGATTTGGATAAAGA+GGG | 0.546531 | 1_2:+58833849 | None:intergenic |
| CCAATCGGATCTAATAAGGT+TGG | 0.547810 | 1_2:-58833912 | Msa0080580:CDS |
| TCTTTAAGCTCTTTATCACC+TGG | 0.551142 | 1_2:+58828102 | None:intergenic |
| ATAGGCGTATTGTTCTGGAT+TGG | 0.551760 | 1_2:+58827117 | None:intergenic |
| AAGAATATTCTCCAAATCCA+AGG | 0.552512 | 1_2:+58826855 | None:intergenic |
| CCAACCTTATTAGATCCGAT+TGG | 0.554336 | 1_2:+58833912 | None:intergenic |
| GAAAAGCATTGATGGATTGG+TGG | 0.555034 | 1_2:-58827987 | Msa0080580:CDS |
| TTACCTTAGCAACTTAAGAC+AGG | 0.555596 | 1_2:-58828055 | Msa0080580:CDS |
| GAAAGAGTGGAAAGCTGGGT+TGG | 0.556200 | 1_2:+58834487 | None:intergenic |
| AATTTGAAGTTTCTTGCTAG+AGG | 0.556900 | 1_2:-58826902 | Msa0080580:three_prime_UTR |
| ACAACTAAACGAACTTTGCA+AGG | 0.560050 | 1_2:-58833229 | Msa0080580:CDS |
| GAAAATCTCATATCTTCAGA+TGG | 0.560173 | 1_2:+58827304 | None:intergenic |
| AGTGGGTCATATTGATGGCA+AGG | 0.560418 | 1_2:-58834016 | Msa0080580:five_prime_UTR |
| TCACATGGAACACAACCAAT+CGG | 0.562048 | 1_2:-58833927 | Msa0080580:exon |
| CTGCAGCTGTCAGATATGAC+TGG | 0.564508 | 1_2:-58827385 | Msa0080580:CDS |
| TTAAGTTCTCTTTACCTGAA+CGG | 0.565840 | 1_2:+58833178 | None:intergenic |
| CTGTAAATTTATTCTGCAGG+TGG | 0.571978 | 1_2:-58827241 | Msa0080580:exon |
| ACCTGGGGAAAAGGAAAGAG+AGG | 0.574069 | 1_2:+58834563 | None:intergenic |
| AATATACCATGAAGTGGTCA+AGG | 0.574865 | 1_2:+58833498 | None:intergenic |
| TAAAAGAATATACCATGAAG+TGG | 0.580028 | 1_2:+58833492 | None:intergenic |
| ACAGACCTACTCAGTGACAT+AGG | 0.581393 | 1_2:+58827067 | None:intergenic |
| TCAATCAGAGGAAAAGACAC+TGG | 0.584588 | 1_2:-58827330 | Msa0080580:CDS |
| CTAGCTGGAAAAGGAAAGAG+TGG | 0.591644 | 1_2:+58834474 | None:intergenic |
| CAGGATCATCTCCTATCTCA+CGG | 0.597806 | 1_2:+58833522 | None:intergenic |
| TCATGGATATGATATTAGCT+AGG | 0.597845 | 1_2:-58827159 | Msa0080580:three_prime_UTR |
| CTACTCAGTGACATAGGTGC+CGG | 0.599631 | 1_2:+58827073 | None:intergenic |
| CTTTGTGGCACATCATGTCC+AGG | 0.602003 | 1_2:-58828120 | Msa0080580:CDS |
| ATTGGTTGTGTTCCATGTGA+AGG | 0.604142 | 1_2:+58833930 | None:intergenic |
| GGTGGTCATGATGAACTTTG+TGG | 0.607949 | 1_2:-58828135 | Msa0080580:CDS |
| AATGCTCCTTCGTAAGTATG+GGG | 0.615416 | 1_2:-58828079 | Msa0080580:CDS |
| GGTCAGATCATGAGGCAGCA+GGG | 0.615533 | 1_2:-58828203 | Msa0080580:intron |
| CTATAGGTGGCCTTATCCCA+CGG | 0.616947 | 1_2:-58827956 | Msa0080580:intron |
| CAACTAAACGAACTTTGCAA+GGG | 0.626350 | 1_2:-58833228 | Msa0080580:CDS |
| TCAGAGGATGAAATGAGTTG+CGG | 0.626862 | 1_2:-58828177 | Msa0080580:CDS |
| GGATGAAATGAGTTGCGGAA+AGG | 0.629271 | 1_2:-58828172 | Msa0080580:CDS |
| AACTAAACGAACTTTGCAAG+GGG | 0.629556 | 1_2:-58833227 | Msa0080580:CDS |
| ATAATTGGTTCATCAATCAG+AGG | 0.632866 | 1_2:-58827342 | Msa0080580:CDS |
| CGGCACCTATGTCACTGAGT+AGG | 0.637662 | 1_2:-58827072 | Msa0080580:three_prime_UTR |
| AGTTCTTCATAGATACAAAG+AGG | 0.649236 | 1_2:-58833304 | Msa0080580:CDS |
| GGTGGAACGTCCACTATAGG+TGG | 0.655633 | 1_2:-58827969 | Msa0080580:CDS |
| TAATAATAACTACCTTCACA+TGG | 0.656128 | 1_2:-58833942 | Msa0080580:exon |
| GCTGCTGGATTGCATCTAGG+AGG | 0.656462 | 1_2:-58833973 | Msa0080580:five_prime_UTR |
| TGAGGCAGCAGGGACATCAG+AGG | 0.661669 | 1_2:-58828193 | Msa0080580:CDS |
| AAGGTTGAAGCAGTAGAAGG+TGG | 0.683452 | 1_2:-58828153 | Msa0080580:CDS |
| ATGCTCCTTCGTAAGTATGG+GGG | 0.702025 | 1_2:-58828078 | Msa0080580:CDS |
| CCTGCAGAATAAATTTACAG+AGG | 0.707916 | 1_2:+58827244 | None:intergenic |
| AGACACACAATCTCACAACA+AGG | 0.726936 | 1_2:+58834587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAATTTATATATTAA+AGG | + | chr1_2:58829161-58829180 | None:intergenic | 0.0% |
| !! | TTAATATATAAATTATATAT+AGG | - | chr1_2:58829161-58829180 | Msa0080580:intron | 0.0% |
| !!! | TATAATTTTATACGTATAAT+TGG | - | chr1_2:58827363-58827382 | Msa0080580:CDS | 10.0% |
| !!! | ATAGGTAAATTATAAAATTT+TGG | - | chr1_2:58829179-58829198 | Msa0080580:intron | 10.0% |
| !!! | TTTTTTTTTTTTAAAAAAGC+CGG | + | chr1_2:58829838-58829857 | None:intergenic | 10.0% |
| !! | TATAAAATGAATTTGAATTT+CGG | - | chr1_2:58829939-58829958 | Msa0080580:intron | 10.0% |
| !! | TAAATATTATGTGAATTAAA+TGG | + | chr1_2:58830552-58830571 | None:intergenic | 10.0% |
| !! | CTATACATTAAATAAAAATT+TGG | - | chr1_2:58831377-58831396 | Msa0080580:intron | 10.0% |
| !!! | AATTTTAATAACTACATTTT+TGG | + | chr1_2:58831566-58831585 | None:intergenic | 10.0% |
| !! | TAGTTATTAAAATTTATTTG+AGG | - | chr1_2:58831572-58831591 | Msa0080580:intron | 10.0% |
| !! | CAAAAAAAATCAATATAAAA+TGG | + | chr1_2:58831776-58831795 | None:intergenic | 10.0% |
| !!! | AATATTTTTTTTTTGTACAA+TGG | + | chr1_2:58831916-58831935 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAATTATGTTG+TGG | - | chr1_2:58833231-58833250 | Msa0080580:CDS | 10.0% |
| !! | TATATCATATGATGAATTAA+AGG | + | chr1_2:58827735-58827754 | None:intergenic | 15.0% |
| !! | AAAAAAATATAGCAGAAAAT+TGG | + | chr1_2:58828070-58828089 | None:intergenic | 15.0% |
| !! | ATTACATTAATTAAATCAGA+TGG | - | chr1_2:58828091-58828110 | Msa0080580:CDS | 15.0% |
| !!! | AACATTTAATTTATTACACT+TGG | - | chr1_2:58828167-58828186 | Msa0080580:CDS | 15.0% |
| !! | AAAAATATCCAGATATTTAA+AGG | + | chr1_2:58828378-58828397 | None:intergenic | 15.0% |
| !! | AAATTAACAAAAAATACACA+AGG | - | chr1_2:58828712-58828731 | Msa0080580:intron | 15.0% |
| !! | AACATAAATATAAATCGTTT+AGG | - | chr1_2:58829290-58829309 | Msa0080580:intron | 15.0% |
| !! | ATTAAAATCCATATTATTGT+CGG | + | chr1_2:58829914-58829933 | None:intergenic | 15.0% |
| !! | TAAATTAACAAGGTTAAAAT+TGG | + | chr1_2:58830397-58830416 | None:intergenic | 15.0% |
| !! | AAATATAAAATGACGTAAAA+GGG | + | chr1_2:58830802-58830821 | None:intergenic | 15.0% |
| !! | TAAATATAAAATGACGTAAA+AGG | + | chr1_2:58830803-58830822 | None:intergenic | 15.0% |
| !!! | CTTATTAAAATAAAAGTGTT+TGG | + | chr1_2:58830850-58830869 | None:intergenic | 15.0% |
| !!! | AAATTAAAGTTTAGTTTAGT+TGG | - | chr1_2:58831183-58831202 | Msa0080580:intron | 15.0% |
| !!! | AATTAAAGTTTAGTTTAGTT+GGG | - | chr1_2:58831184-58831203 | Msa0080580:intron | 15.0% |
| !!! | TTTAAATGTTCTTTTTGTAT+AGG | + | chr1_2:58831238-58831257 | None:intergenic | 15.0% |
| !! | TTCATGTCAATATATTAAAA+TGG | + | chr1_2:58833015-58833034 | None:intergenic | 15.0% |
| !! | TTGATTATATATCTGATAAA+AGG | - | chr1_2:58833869-58833888 | Msa0080580:CDS | 15.0% |
| !!! | TATAATTTGATGAATTTTTC+AGG | - | chr1_2:58834096-58834115 | Msa0080580:intron | 15.0% |
| !! | ATATAAAGCAGATAAATAAT+TGG | - | chr1_2:58834158-58834177 | Msa0080580:intron | 15.0% |
| !!! | TTCGTTTTCCAAATTATATA+TGG | - | chr1_2:58827218-58827237 | Msa0080580:three_prime_UTR | 20.0% |
| !! | AAACTAGACCATATATAATT+TGG | + | chr1_2:58827229-58827248 | None:intergenic | 20.0% |
| !!! | ATGTAGAATAAAAAACCTTT+TGG | + | chr1_2:58827708-58827727 | None:intergenic | 20.0% |
| !! | ATTAATTAAATCAGATGGAA+TGG | - | chr1_2:58828096-58828115 | Msa0080580:CDS | 20.0% |
| !! | TATTATCGTACATAATTAGA+GGG | + | chr1_2:58828509-58828528 | None:intergenic | 20.0% |
| !! | TTATTATCGTACATAATTAG+AGG | + | chr1_2:58828510-58828529 | None:intergenic | 20.0% |
| !! | CTAATTATGTACGATAATAA+TGG | - | chr1_2:58828510-58828529 | Msa0080580:intron | 20.0% |
| !!! | GTTTTACACAATAACATATA+TGG | - | chr1_2:58828897-58828916 | Msa0080580:intron | 20.0% |
| !! | CTACAATTAGAATAATGATA+TGG | - | chr1_2:58828998-58829017 | Msa0080580:intron | 20.0% |
| !! | ATAAAGCCAAAAAACATTTA+GGG | + | chr1_2:58829500-58829519 | None:intergenic | 20.0% |
| !!! | TTTTTTGGCTTTATGTTATT+TGG | - | chr1_2:58829506-58829525 | Msa0080580:intron | 20.0% |
| !!! | TGTTATTTGGATTATTTGTA+AGG | - | chr1_2:58829519-58829538 | Msa0080580:intron | 20.0% |
| !!! | TTTCTTTGTCAAACTTTTTT+CGG | - | chr1_2:58829761-58829780 | Msa0080580:intron | 20.0% |
| !!! | GTTAAACAAATTTTTGCTAT+GGG | + | chr1_2:58829970-58829989 | None:intergenic | 20.0% |
| !!! | TGTTAAACAAATTTTTGCTA+TGG | + | chr1_2:58829971-58829990 | None:intergenic | 20.0% |
| !! | ATATTTGCATTCATCTAATA+TGG | - | chr1_2:58830056-58830075 | Msa0080580:intron | 20.0% |
| !!! | TGTTTTTCAATGAAGATTAT+TGG | - | chr1_2:58830101-58830120 | Msa0080580:intron | 20.0% |
| !! | TATTATGTGAATTAAATGGA+AGG | + | chr1_2:58830548-58830567 | None:intergenic | 20.0% |
| !! | TCCAATATAAAAACTTAACT+TGG | - | chr1_2:58831457-58831476 | Msa0080580:intron | 20.0% |
| !!! | AAATTTATTTGAGGTTTGAT+AGG | - | chr1_2:58831581-58831600 | Msa0080580:intron | 20.0% |
| !!! | AATTTATTTGAGGTTTGATA+GGG | - | chr1_2:58831582-58831601 | Msa0080580:intron | 20.0% |
| !!! | GGTTTTAATATCAAATTGAT+TGG | - | chr1_2:58831686-58831705 | Msa0080580:intron | 20.0% |
| !!! | ATTTTTGTATATCATCACAA+TGG | - | chr1_2:58831933-58831952 | Msa0080580:intron | 20.0% |
| !!! | ACGCGAAAATTTTAAAATTT+AGG | + | chr1_2:58832522-58832541 | None:intergenic | 20.0% |
| !! | ATTGAATTTCTATAAAACAG+TGG | - | chr1_2:58832732-58832751 | Msa0080580:intron | 20.0% |
| !! | TCTCACTAATAATAAAATGT+TGG | - | chr1_2:58832979-58832998 | Msa0080580:intron | 20.0% |
| !! | ACTAATAATAAAATGTTGGA+GGG | - | chr1_2:58832983-58833002 | Msa0080580:intron | 20.0% |
| !!! | TTGTACTAATTAAGTTGATA+TGG | - | chr1_2:58833177-58833196 | Msa0080580:intron | 20.0% |
| !!! | ATTTCATTTTGTCCTTTTTT+TGG | - | chr1_2:58833290-58833309 | Msa0080580:CDS | 20.0% |
| !!! | TTTCATTTTGTCCTTTTTTT+GGG | - | chr1_2:58833291-58833310 | Msa0080580:CDS | 20.0% |
| !! | TCATCAAATTATAATCTATC+AGG | + | chr1_2:58834089-58834108 | None:intergenic | 20.0% |
| !!! | AGATATGAGATTTTCTATTA+TGG | - | chr1_2:58834219-58834238 | Msa0080580:intron | 20.0% |
| ! | GGAAAAGAAAAGCAAAAATA+AGG | - | chr1_2:58826981-58827000 | Msa0080580:three_prime_UTR | 25.0% |
| ! | TAATAATAACTACCTTCACA+TGG | - | chr1_2:58827573-58827592 | Msa0080580:intron | 25.0% |
| ! | ATAGTAGATTTGGATAAAGA+GGG | + | chr1_2:58827669-58827688 | None:intergenic | 25.0% |
| ! | AAAAAAGCAGATAGTAGATT+TGG | + | chr1_2:58827679-58827698 | None:intergenic | 25.0% |
| ! | ATCATATGATGAATTAAAGG+AGG | + | chr1_2:58827732-58827751 | None:intergenic | 25.0% |
| ! | ATACTATATATTGTGCATGA+AGG | - | chr1_2:58827900-58827919 | Msa0080580:intron | 25.0% |
| ! | TAAAAGAATATACCATGAAG+TGG | + | chr1_2:58828026-58828045 | None:intergenic | 25.0% |
| !! | ATTTATTACACTTGGTGATT+AGG | - | chr1_2:58828175-58828194 | Msa0080580:CDS | 25.0% |
| !! | AATAATGTTGCTTCATTGAA+GGG | + | chr1_2:58828248-58828267 | None:intergenic | 25.0% |
| !! | AAATAATGTTGCTTCATTGA+AGG | + | chr1_2:58828249-58828268 | None:intergenic | 25.0% |
| ! | TCATAATGCCTTTAAATATC+TGG | - | chr1_2:58828367-58828386 | Msa0080580:intron | 25.0% |
| ! | TCGTGTTACAAAAAAGAAAA+GGG | + | chr1_2:58828482-58828501 | None:intergenic | 25.0% |
| ! | TTCGTGTTACAAAAAAGAAA+AGG | + | chr1_2:58828483-58828502 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTGTAACACGAA+TGG | - | chr1_2:58828483-58828502 | Msa0080580:intron | 25.0% |
| !! | ATTTATACTCGTGTTCTTTT+TGG | + | chr1_2:58828784-58828803 | None:intergenic | 25.0% |
| ! | ATTAATTACATCCACAATTG+AGG | - | chr1_2:58828973-58828992 | Msa0080580:intron | 25.0% |
| !!! | TTAGGGATTTTTTTTGCATA+AGG | - | chr1_2:58829465-58829484 | Msa0080580:intron | 25.0% |
| ! | CATAAAGCCAAAAAACATTT+AGG | + | chr1_2:58829501-58829520 | None:intergenic | 25.0% |
| ! | AACTGTAGTAAACAGAAAAT+AGG | + | chr1_2:58829687-58829706 | None:intergenic | 25.0% |
| ! | TTTAATATATCGTTTCCTTC+CGG | - | chr1_2:58829816-58829835 | Msa0080580:intron | 25.0% |
| !!! | TTTTTTTTAAAAAAGCCGGA+AGG | + | chr1_2:58829834-58829853 | None:intergenic | 25.0% |
| ! | AGATGAATGCAAATATACAA+TGG | + | chr1_2:58830052-58830071 | None:intergenic | 25.0% |
| !!! | CAGTATTTTTGTGAAAATTC+GGG | + | chr1_2:58831040-58831059 | None:intergenic | 25.0% |
| !!! | GCAGTATTTTTGTGAAAATT+CGG | + | chr1_2:58831041-58831060 | None:intergenic | 25.0% |
| ! | TTACCAAAGAAATTGAATGT+GGG | + | chr1_2:58831165-58831184 | None:intergenic | 25.0% |
| ! | TTTACCAAAGAAATTGAATG+TGG | + | chr1_2:58831166-58831185 | None:intergenic | 25.0% |
| !! | GCCAAGTTAAGTTTTTATAT+TGG | + | chr1_2:58831461-58831480 | None:intergenic | 25.0% |
| ! | TGATCAAATCACAAAACTAA+AGG | - | chr1_2:58831710-58831729 | Msa0080580:intron | 25.0% |
| ! | GATCAAATCACAAAACTAAA+GGG | - | chr1_2:58831711-58831730 | Msa0080580:intron | 25.0% |
| ! | TATGGTCTACAATTAAAACT+TGG | + | chr1_2:58831824-58831843 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGTACAATGGAGA+CGG | + | chr1_2:58831910-58831929 | None:intergenic | 25.0% |
| ! | ATTTAATTCAGATACTTCGT+GGG | + | chr1_2:58832213-58832232 | None:intergenic | 25.0% |
| ! | TATTTAATTCAGATACTTCG+TGG | + | chr1_2:58832214-58832233 | None:intergenic | 25.0% |
| !! | GAAGTATCTTATAAGTATCT+TGG | + | chr1_2:58832292-58832311 | None:intergenic | 25.0% |
| !!! | TTTTACCCTTCATTTTTTCT+AGG | + | chr1_2:58832327-58832346 | None:intergenic | 25.0% |
| !! | TAATCAATGCTTATTTCTTC+AGG | - | chr1_2:58832433-58832452 | Msa0080580:intron | 25.0% |
| ! | ACAACACATAAAATTTACCT+TGG | + | chr1_2:58832853-58832872 | None:intergenic | 25.0% |
| ! | GTACGTGAAATAAAATGATT+GGG | + | chr1_2:58832922-58832941 | None:intergenic | 25.0% |
| ! | AAGTTAATTGTTGGAATTGT+TGG | - | chr1_2:58832952-58832971 | Msa0080580:intron | 25.0% |
| ! | CACTAATAATAAAATGTTGG+AGG | - | chr1_2:58832982-58833001 | Msa0080580:intron | 25.0% |
| ! | CTAATAATAAAATGTTGGAG+GGG | - | chr1_2:58832984-58833003 | Msa0080580:intron | 25.0% |
| ! | TAATAATAAAATGTTGGAGG+GGG | - | chr1_2:58832985-58833004 | Msa0080580:intron | 25.0% |
| !! | ATTGAAGCTATAGAAAGTAT+AGG | - | chr1_2:58833037-58833056 | Msa0080580:intron | 25.0% |
| !! | TTGAAGCTATAGAAAGTATA+GGG | - | chr1_2:58833038-58833057 | Msa0080580:intron | 25.0% |
| ! | ATTTCTCAAGAAAAGGAAAA+AGG | - | chr1_2:58833484-58833503 | Msa0080580:intron | 25.0% |
| ! | TTTCTCAAGAAAAGGAAAAA+GGG | - | chr1_2:58833485-58833504 | Msa0080580:intron | 25.0% |
| ! | ATTTGAATTTGAATTACCGT+GGG | + | chr1_2:58833578-58833597 | None:intergenic | 25.0% |
| ! | AATTTGAATTTGAATTACCG+TGG | + | chr1_2:58833579-58833598 | None:intergenic | 25.0% |
| !! | TGTATATTTTGTCCAATGAA+TGG | - | chr1_2:58833682-58833701 | Msa0080580:intron | 25.0% |
| !! | TGTTTGTACTAGAAAACTTT+TGG | - | chr1_2:58833924-58833943 | Msa0080580:CDS | 25.0% |
| !!! | AATTTGATGAATTTTTCAGG+AGG | - | chr1_2:58834099-58834118 | Msa0080580:intron | 25.0% |
| !! | TATGAGATTTTCTATTATGG+AGG | - | chr1_2:58834222-58834241 | Msa0080580:intron | 25.0% |
| !! | ATGAGATTTTCTATTATGGA+GGG | - | chr1_2:58834223-58834242 | Msa0080580:intron | 25.0% |
| ! | ATTATTAGTTATCTGTTTCG+TGG | - | chr1_2:58834517-58834536 | Msa0080580:five_prime_UTR | 25.0% |
| ! | TTTCTTTTCCAAGAAAACCT+GGG | + | chr1_2:58826971-58826990 | None:intergenic | 30.0% |
| ! | TTTTCTTTTCCAAGAAAACC+TGG | + | chr1_2:58826972-58826991 | None:intergenic | 30.0% |
| AGAAAAGCAAAAATAAGGTC+TGG | - | chr1_2:58826986-58827005 | Msa0080580:three_prime_UTR | 30.0% | |
| ! | TATGGATTATATTCTCCACT+AGG | - | chr1_2:58827128-58827147 | Msa0080580:three_prime_UTR | 30.0% |
| !!! | AGGTTTTTTATTTCACCTAG+TGG | + | chr1_2:58827146-58827165 | None:intergenic | 30.0% |
| GGTGAAATAAAAAACCTACA+CGG | - | chr1_2:58827149-58827168 | Msa0080580:three_prime_UTR | 30.0% | |
| GTGAAATAAAAAACCTACAC+GGG | - | chr1_2:58827150-58827169 | Msa0080580:three_prime_UTR | 30.0% | |
| CAAGTGAGTTTAGATATACA+TGG | - | chr1_2:58827443-58827462 | Msa0080580:intron | 30.0% | |
| TCTAATAAGGTTGGATATGA+CGG | - | chr1_2:58827612-58827631 | Msa0080580:intron | 30.0% | |
| GATAGTAGATTTGGATAAAG+AGG | + | chr1_2:58827670-58827689 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTAGAATGCCAAA+AGG | - | chr1_2:58827690-58827709 | Msa0080580:intron | 30.0% |
| TATATATTGTGCATGAAGGT+TGG | - | chr1_2:58827904-58827923 | Msa0080580:intron | 30.0% | |
| ATATATTGTGCATGAAGGTT+GGG | - | chr1_2:58827905-58827924 | Msa0080580:intron | 30.0% | |
| CTTCTCTTCTTGAAGAAATA+GGG | - | chr1_2:58827944-58827963 | Msa0080580:intron | 30.0% | |
| ATATAGCAGAAAATTGGACT+TGG | + | chr1_2:58828064-58828083 | None:intergenic | 30.0% | |
| AGTTCTTCATAGATACAAAG+AGG | - | chr1_2:58828211-58828230 | Msa0080580:intron | 30.0% | |
| TTAAGTTCTCTTTACCTGAA+CGG | + | chr1_2:58828340-58828359 | None:intergenic | 30.0% | |
| TCAGGTAAAGAGAACTTAAT+TGG | - | chr1_2:58828341-58828360 | Msa0080580:intron | 30.0% | |
| AGTAGCAAATCTTTACATTG+AGG | - | chr1_2:58828575-58828594 | Msa0080580:intron | 30.0% | |
| ! | TACTTGCTGACAAAGTTATA+GGG | + | chr1_2:58829108-58829127 | None:intergenic | 30.0% |
| ! | ATACTTGCTGACAAAGTTAT+AGG | + | chr1_2:58829109-58829128 | None:intergenic | 30.0% |
| !!! | GTGCCTAAATGATTTTGATT+TGG | - | chr1_2:58829406-58829425 | Msa0080580:intron | 30.0% |
| ACGCCAAATCAAAATCATTT+AGG | + | chr1_2:58829412-58829431 | None:intergenic | 30.0% | |
| ! | TTTCTCACTAGTACTAGTTT+AGG | - | chr1_2:58829447-58829466 | Msa0080580:intron | 30.0% |
| ! | TTCTCACTAGTACTAGTTTA+GGG | - | chr1_2:58829448-58829467 | Msa0080580:intron | 30.0% |
| !!! | AAAGCTCCCTAAATGTTTTT+TGG | - | chr1_2:58829491-58829510 | Msa0080580:intron | 30.0% |
| TAAAACTTCAGTTCTATTGG+TGG | - | chr1_2:58829601-58829620 | Msa0080580:intron | 30.0% | |
| TCGACTTTGACTATCAATTA+TGG | - | chr1_2:58829652-58829671 | Msa0080580:intron | 30.0% | |
| ACTTTGACTATCAATTATGG+AGG | - | chr1_2:58829655-58829674 | Msa0080580:intron | 30.0% | |
| ! | TTTGTTGTCCGACAATAATA+TGG | - | chr1_2:58829903-58829922 | Msa0080580:intron | 30.0% |
| ! | ACAATGGTACTCATAGATTT+TGG | + | chr1_2:58830036-58830055 | None:intergenic | 30.0% |
| ACTAATATATAGGCTGTGTT+TGG | - | chr1_2:58830205-58830224 | Msa0080580:intron | 30.0% | |
| AGATCAAAATGTGATGTGTT+TGG | - | chr1_2:58830279-58830298 | Msa0080580:intron | 30.0% | |
| ! | ATTTTTGTGAAAATTCGGGT+CGG | + | chr1_2:58831036-58831055 | None:intergenic | 30.0% |
| ! | AGTTTAGTTTAGTTGGGTTT+CGG | - | chr1_2:58831190-58831209 | Msa0080580:intron | 30.0% |
| ! | GTATAGGTTTGCTTTGAATT+TGG | + | chr1_2:58831222-58831241 | None:intergenic | 30.0% |
| AATGTATAGCTCTTCAATGA+AGG | + | chr1_2:58831366-58831385 | None:intergenic | 30.0% | |
| ATATTGGACTTGACTCATAA+CGG | + | chr1_2:58831445-58831464 | None:intergenic | 30.0% | |
| CAATCCAATCTCAAATACAT+GGG | - | chr1_2:58831659-58831678 | Msa0080580:intron | 30.0% | |
| ! | AATTCCCATGTATTTGAGAT+TGG | + | chr1_2:58831666-58831685 | None:intergenic | 30.0% |
| AATCTCAAATACATGGGAAT+TGG | - | chr1_2:58831665-58831684 | Msa0080580:intron | 30.0% | |
| TGGAAAACTCACATGTAAAT+GGG | + | chr1_2:58832044-58832063 | None:intergenic | 30.0% | |
| TTGGAAAACTCACATGTAAA+TGG | + | chr1_2:58832045-58832064 | None:intergenic | 30.0% | |
| ! | TTTACATGTGAGTTTTCCAA+TGG | - | chr1_2:58832045-58832064 | Msa0080580:intron | 30.0% |
| ! | TAAGTATCTTGGTGTATATG+TGG | + | chr1_2:58832281-58832300 | None:intergenic | 30.0% |
| ACGTATCCTAGAAAAAATGA+AGG | - | chr1_2:58832318-58832337 | Msa0080580:intron | 30.0% | |
| CGTATCCTAGAAAAAATGAA+GGG | - | chr1_2:58832319-58832338 | Msa0080580:intron | 30.0% | |
| GACAATGATGTGAAATTCAA+TGG | - | chr1_2:58832353-58832372 | Msa0080580:intron | 30.0% | |
| TTCTATAAAACAGTGGTTTC+TGG | - | chr1_2:58832739-58832758 | Msa0080580:intron | 30.0% | |
| AAACATTCCCATTTCATTAC+TGG | + | chr1_2:58832775-58832794 | None:intergenic | 30.0% | |
| ! | GTAATGAAATGGGAATGTTT+TGG | - | chr1_2:58832775-58832794 | Msa0080580:intron | 30.0% |
| CTATTATATAGTTGCATGCA+TGG | - | chr1_2:58832798-58832817 | Msa0080580:intron | 30.0% | |
| GGAATATACTTGAAATTCCA+AGG | - | chr1_2:58832833-58832852 | Msa0080580:intron | 30.0% | |
| CGTACGTGAAATAAAATGAT+TGG | + | chr1_2:58832923-58832942 | None:intergenic | 30.0% | |
| TGAAAGCGAAAGTTAATTGT+TGG | - | chr1_2:58832943-58832962 | Msa0080580:intron | 30.0% | |
| AATAATAAAATGTTGGAGGG+GGG | - | chr1_2:58832986-58833005 | Msa0080580:intron | 30.0% | |
| CTCATTCGGCATATAATAAT+TGG | - | chr1_2:58833065-58833084 | Msa0080580:intron | 30.0% | |
| ! | TTTTGTTGAATGTGTGTACA+TGG | + | chr1_2:58833140-58833159 | None:intergenic | 30.0% |
| ! | ATCCTGACTGGAATAATTTT+TGG | - | chr1_2:58833726-58833745 | Msa0080580:intron | 30.0% |
| CAAATGTAAGTTAAGCTTGT+TGG | + | chr1_2:58833974-58833993 | None:intergenic | 30.0% | |
| GCTTAACTTACATTTGCAAA+AGG | - | chr1_2:58833978-58833997 | Msa0080580:five_prime_UTR | 30.0% | |
| ! | ATAATTGGTTCATCAATCAG+AGG | - | chr1_2:58834173-58834192 | Msa0080580:intron | 30.0% |
| GAAAATCTCATATCTTCAGA+TGG | + | chr1_2:58834214-58834233 | None:intergenic | 30.0% | |
| TCATGGATATGATATTAGCT+AGG | - | chr1_2:58834356-58834375 | Msa0080580:intron | 30.0% | |
| ATATGATATTAGCTAGGCTT+CGG | - | chr1_2:58834362-58834381 | Msa0080580:intron | 30.0% | |
| GAAAAATTAACATAGGGCAT+AGG | + | chr1_2:58834419-58834438 | None:intergenic | 30.0% | |
| CGGTTCGAAAAATTAACATA+GGG | + | chr1_2:58834425-58834444 | None:intergenic | 30.0% | |
| !! | CCTATGTTAATTTTTCGAAC+CGG | - | chr1_2:58834423-58834442 | Msa0080580:intron | 30.0% |
| ! | AATTTGAAGTTTCTTGCTAG+AGG | - | chr1_2:58834613-58834632 | Msa0080580:five_prime_UTR | 30.0% |
| !!! | TTTTAGATGATGATTAGCCT+TGG | - | chr1_2:58834643-58834662 | Msa0080580:five_prime_UTR | 30.0% |
| ! | TTCTTTTCCAAGAAAACCTG+GGG | + | chr1_2:58826970-58826989 | None:intergenic | 35.0% |
| CAGTCAAACAAAAGGAGATT+AGG | + | chr1_2:58827329-58827348 | None:intergenic | 35.0% | |
| CTAGTTAGCAGTCAAACAAA+AGG | + | chr1_2:58827337-58827356 | None:intergenic | 35.0% | |
| GTAAAAGGACATTCAACTTG+CGG | + | chr1_2:58827479-58827498 | None:intergenic | 35.0% | |
| ! | AGTTGAATGTCCTTTTACAG+TGG | - | chr1_2:58827481-58827500 | Msa0080580:intron | 35.0% |
| ! | GTTGAATGTCCTTTTACAGT+GGG | - | chr1_2:58827482-58827501 | Msa0080580:intron | 35.0% |
| TCAATATGACCCACTGTAAA+AGG | + | chr1_2:58827494-58827513 | None:intergenic | 35.0% | |
| TTTACAGTGGGTCATATTGA+TGG | - | chr1_2:58827494-58827513 | Msa0080580:intron | 35.0% | |
| GTTTATTCTTATTCTGCTGC+TGG | - | chr1_2:58827527-58827546 | Msa0080580:intron | 35.0% | |
| ACAACCAATCGGATCTAATA+AGG | - | chr1_2:58827599-58827618 | Msa0080580:intron | 35.0% | |
| TATATTGTGCATGAAGGTTG+GGG | - | chr1_2:58827906-58827925 | Msa0080580:intron | 35.0% | |
| GCTTCTCTTCTTGAAGAAAT+AGG | - | chr1_2:58827943-58827962 | Msa0080580:intron | 35.0% | |
| !!! | TCTCACGGAAAGCATTATTT+TGG | + | chr1_2:58827981-58828000 | None:intergenic | 35.0% |
| AATAATGCTTTCCGTGAGAT+AGG | - | chr1_2:58827982-58828001 | Msa0080580:CDS | 35.0% | |
| AATATACCATGAAGTGGTCA+AGG | + | chr1_2:58828020-58828039 | None:intergenic | 35.0% | |
| ACAACTAAACGAACTTTGCA+AGG | - | chr1_2:58828286-58828305 | Msa0080580:intron | 35.0% | |
| CAACTAAACGAACTTTGCAA+GGG | - | chr1_2:58828287-58828306 | Msa0080580:intron | 35.0% | |
| AACTAAACGAACTTTGCAAG+GGG | - | chr1_2:58828288-58828307 | Msa0080580:intron | 35.0% | |
| TTTACCTGAACGGTTGTAAT+CGG | + | chr1_2:58828330-58828349 | None:intergenic | 35.0% | |
| GAAAATGTCCTGAACATGAA+TGG | - | chr1_2:58828456-58828475 | Msa0080580:intron | 35.0% | |
| TCCTTCGAATTTAAATGCCT+TGG | - | chr1_2:58828657-58828676 | Msa0080580:intron | 35.0% | |
| CCTTCGAATTTAAATGCCTT+GGG | - | chr1_2:58828658-58828677 | Msa0080580:intron | 35.0% | |
| !! | AATCCTACTTTAGAGTCACT+TGG | + | chr1_2:58828821-58828840 | None:intergenic | 35.0% |
| TAATTGTAGTGCCTCAATTG+TGG | + | chr1_2:58828987-58829006 | None:intergenic | 35.0% | |
| ! | ACTTGCTGACAAAGTTATAG+GGG | + | chr1_2:58829107-58829126 | None:intergenic | 35.0% |
| ! | TTTTGGTACCCCTGAAAATA+TGG | - | chr1_2:58829196-58829215 | Msa0080580:intron | 35.0% |
| AAGTGTATCTCATTTAGCTG+TGG | + | chr1_2:58829259-58829278 | None:intergenic | 35.0% | |
| TTTAGGCTCACACACATAAA+AGG | - | chr1_2:58829307-58829326 | Msa0080580:intron | 35.0% | |
| TTAGGCTCACACACATAAAA+GGG | - | chr1_2:58829308-58829327 | Msa0080580:intron | 35.0% | |
| ! | GGGAAAAGTATGAAATAGCA+AGG | - | chr1_2:58829328-58829347 | Msa0080580:intron | 35.0% |
| ! | CGTAACAACGTATTTTCTAG+AGG | - | chr1_2:58829544-58829563 | Msa0080580:intron | 35.0% |
| !! | ACAACGTATTTTCTAGAGGA+AGG | - | chr1_2:58829548-58829567 | Msa0080580:intron | 35.0% |
| ACTTACATGCTCTTTGTGAA+AGG | - | chr1_2:58829577-58829596 | Msa0080580:intron | 35.0% | |
| CTTACATGCTCTTTGTGAAA+GGG | - | chr1_2:58829578-58829597 | Msa0080580:intron | 35.0% | |
| GGGTAAAACTTCAGTTCTAT+TGG | - | chr1_2:58829598-58829617 | Msa0080580:intron | 35.0% | |
| CTACACAGTATCTGAAAGAA+AGG | + | chr1_2:58829734-58829753 | None:intergenic | 35.0% | |
| TCAGCCACACACTAATATAT+AGG | - | chr1_2:58830195-58830214 | Msa0080580:intron | 35.0% | |
| ACAGCCTATATATTAGTGTG+TGG | + | chr1_2:58830202-58830221 | None:intergenic | 35.0% | |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | + | chr1_2:58830906-58830925 | None:intergenic | 35.0% |
| ! | TTTTTGTGAAAATTCGGGTC+GGG | + | chr1_2:58831035-58831054 | None:intergenic | 35.0% |
| AAGAAATTGAATGTGGGTCT+CGG | + | chr1_2:58831159-58831178 | None:intergenic | 35.0% | |
| AGACCCACATTCAATTTCTT+TGG | - | chr1_2:58831159-58831178 | Msa0080580:intron | 35.0% | |
| ! | GTTTAGTTTAGTTGGGTTTC+GGG | - | chr1_2:58831191-58831210 | Msa0080580:intron | 35.0% |
| ! | TTTAGTTTAGTTGGGTTTCG+GGG | - | chr1_2:58831192-58831211 | Msa0080580:intron | 35.0% |
| ! | GAAGGTTGACTTAATTGACA+AGG | + | chr1_2:58831348-58831367 | None:intergenic | 35.0% |
| TATTGGACTTGACTCATAAC+GGG | + | chr1_2:58831444-58831463 | None:intergenic | 35.0% | |
| ! | ATAGTGGAGTTTCCCTTAAA+CGG | - | chr1_2:58831487-58831506 | Msa0080580:intron | 35.0% |
| ! | CCATGTATTTGAGATTGGAT+TGG | + | chr1_2:58831661-58831680 | None:intergenic | 35.0% |
| CCAATCCAATCTCAAATACA+TGG | - | chr1_2:58831658-58831677 | Msa0080580:intron | 35.0% | |
| AGTACTATGTATGAGATCCT+GGG | - | chr1_2:58831878-58831897 | Msa0080580:intron | 35.0% | |
| GATGCATACACATAACACTA+GGG | + | chr1_2:58831959-58831978 | None:intergenic | 35.0% | |
| TGATGCATACACATAACACT+AGG | + | chr1_2:58831960-58831979 | None:intergenic | 35.0% | |
| GTCAGTTGAGTTAAGACTTA+TGG | + | chr1_2:58832013-58832032 | None:intergenic | 35.0% | |
| GAAGAAACAACATTAGCCAT+TGG | + | chr1_2:58832064-58832083 | None:intergenic | 35.0% | |
| !! | TGAAGTATTGGTATCCGATA+CGG | + | chr1_2:58832126-58832145 | None:intergenic | 35.0% |
| TATCGGATACCAATACTTCA+CGG | - | chr1_2:58832126-58832145 | Msa0080580:intron | 35.0% | |
| TATGATACGATACAGGTACA+CGG | + | chr1_2:58832547-58832566 | None:intergenic | 35.0% | |
| GAAAAGAGTAATTCACTGCT+AGG | + | chr1_2:58832668-58832687 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCTTTCCATGTCA+AGG | - | chr1_2:58832683-58832702 | Msa0080580:intron | 35.0% |
| ATAATAAAATGTTGGAGGGG+GGG | - | chr1_2:58832987-58833006 | Msa0080580:intron | 35.0% | |
| TCATGATCTGACCCAAAAAA+AGG | + | chr1_2:58833305-58833324 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGGGTCAGATCATG+AGG | - | chr1_2:58833304-58833323 | Msa0080580:CDS | 35.0% |
| TCTTTAAGCTCTTTATCACC+TGG | + | chr1_2:58833416-58833435 | None:intergenic | 35.0% | |
| AAATGCTCCTTCGTAAGTAT+GGG | - | chr1_2:58833435-58833454 | Msa0080580:intron | 35.0% | |
| TTACCTTAGCAACTTAAGAC+AGG | - | chr1_2:58833460-58833479 | Msa0080580:intron | 35.0% | |
| ! | ATTCCTGTCTTAAGTTGCTA+AGG | + | chr1_2:58833466-58833485 | None:intergenic | 35.0% |
| GACAGGAATTTCTCAAGAAA+AGG | - | chr1_2:58833477-58833496 | Msa0080580:intron | 35.0% | |
| GAAAAAGGGTAAACTACCAA+AGG | - | chr1_2:58833499-58833518 | Msa0080580:intron | 35.0% | |
| ! | AATGCTTTTCTTGCATCCTT+TGG | + | chr1_2:58833518-58833537 | None:intergenic | 35.0% |
| !! | CAAGAAAAGCATTGATGGAT+TGG | - | chr1_2:58833525-58833544 | Msa0080580:CDS | 35.0% |
| ATTTGAATTACCGTGGGATA+AGG | + | chr1_2:58833572-58833591 | None:intergenic | 35.0% | |
| AATTTCCTCGAACCATTCAT+TGG | + | chr1_2:58833697-58833716 | None:intergenic | 35.0% | |
| ! | ATTTGAGTTCAAATCCTGAC+TGG | - | chr1_2:58833714-58833733 | Msa0080580:intron | 35.0% |
| GACCAAAAATTATTCCAGTC+AGG | + | chr1_2:58833731-58833750 | None:intergenic | 35.0% | |
| TCCTTCATTTGGAAACAGAA+GGG | - | chr1_2:58833794-58833813 | Msa0080580:intron | 35.0% | |
| CAGAAGGGTTAAGACAAAAA+AGG | - | chr1_2:58833809-58833828 | Msa0080580:intron | 35.0% | |
| ! | TAACACCAACAAAATGGACT+AGG | + | chr1_2:58833897-58833916 | None:intergenic | 35.0% |
| ACACTGTAACACCAACAAAA+TGG | + | chr1_2:58833903-58833922 | None:intergenic | 35.0% | |
| ! | GTACTAGAAAACTTTTGGCA+TGG | - | chr1_2:58833929-58833948 | Msa0080580:exon | 35.0% |
| TGGAATTGACGTTGTTATCT+TGG | + | chr1_2:58834016-58834035 | None:intergenic | 35.0% | |
| AGCAAAGAAGCTTGACAAAA+TGG | + | chr1_2:58834036-58834055 | None:intergenic | 35.0% | |
| !!! | TTGATGAATTTTTCAGGAGG+AGG | - | chr1_2:58834102-58834121 | Msa0080580:intron | 35.0% |
| CCTGCAGAATAAATTTACAG+AGG | + | chr1_2:58834274-58834293 | None:intergenic | 35.0% | |
| CCTCTGTAAATTTATTCTGC+AGG | - | chr1_2:58834271-58834290 | Msa0080580:intron | 35.0% | |
| CTGTAAATTTATTCTGCAGG+TGG | - | chr1_2:58834274-58834293 | Msa0080580:intron | 35.0% | |
| TCCATGACATTCAAGCAAAA+GGG | + | chr1_2:58834343-58834362 | None:intergenic | 35.0% | |
| ATCCATGACATTCAAGCAAA+AGG | + | chr1_2:58834344-58834363 | None:intergenic | 35.0% | |
| ! | CCGGTTCGAAAAATTAACAT+AGG | + | chr1_2:58834426-58834445 | None:intergenic | 35.0% |
| !! | ATGATGATTAGCCTTGGATT+TGG | - | chr1_2:58834649-58834668 | Msa0080580:five_prime_UTR | 35.0% |
| AGACACACAATCTCACAACA+AGG | + | chr1_2:58826931-58826950 | None:intergenic | 40.0% | |
| !! | AATAAGGTCTGGTCTTTTCC+AGG | - | chr1_2:58826997-58827016 | Msa0080580:three_prime_UTR | 40.0% |
| AAAGGAAAGAGTGGAAAGCT+GGG | + | chr1_2:58827035-58827054 | None:intergenic | 40.0% | |
| AAAAGGAAAGAGTGGAAAGC+TGG | + | chr1_2:58827036-58827055 | None:intergenic | 40.0% | |
| TTATTTGAACCTCAGCTAGC+TGG | + | chr1_2:58827059-58827078 | None:intergenic | 40.0% | |
| ATTGGTTGTGTTCCATGTGA+AGG | + | chr1_2:58827588-58827607 | None:intergenic | 40.0% | |
| TCACATGGAACACAACCAAT+CGG | - | chr1_2:58827588-58827607 | Msa0080580:intron | 40.0% | |
| CCAACCTTATTAGATCCGAT+TGG | + | chr1_2:58827606-58827625 | None:intergenic | 40.0% | |
| CCAATCGGATCTAATAAGGT+TGG | - | chr1_2:58827603-58827622 | Msa0080580:intron | 40.0% | |
| AGAAGAGAAGCAAGTTCTGT+TGG | + | chr1_2:58827934-58827953 | None:intergenic | 40.0% | |
| !!! | CACGGAAAGCATTATTTTGG+TGG | + | chr1_2:58827978-58827997 | None:intergenic | 40.0% |
| TGCTAACTTAAGAGGACAGA+TGG | + | chr1_2:58828613-58828632 | None:intergenic | 40.0% | |
| ACAAGCAGTGCTAACTTAAG+AGG | + | chr1_2:58828621-58828640 | None:intergenic | 40.0% | |
| TGCTTGTAATGAGATCAAGC+TGG | - | chr1_2:58828634-58828653 | Msa0080580:intron | 40.0% | |
| ! | CCCAAGGCATTTAAATTCGA+AGG | + | chr1_2:58828661-58828680 | None:intergenic | 40.0% |
| !! | GAACCAAGTGACTCTAAAGT+AGG | - | chr1_2:58828815-58828834 | Msa0080580:intron | 40.0% |
| !! | ACGTATTTTCTAGAGGAAGG+AGG | - | chr1_2:58829551-58829570 | Msa0080580:intron | 40.0% |
| TATATTAGTGTGTGGCTGAG+TGG | + | chr1_2:58830194-58830213 | None:intergenic | 40.0% | |
| TAAGCAATTAGTGGGAACGT+GGG | + | chr1_2:58830450-58830469 | None:intergenic | 40.0% | |
| GGTTGTCGTAAGCAATTAGT+GGG | + | chr1_2:58830458-58830477 | None:intergenic | 40.0% | |
| TGGTTGTCGTAAGCAATTAG+TGG | + | chr1_2:58830459-58830478 | None:intergenic | 40.0% | |
| TAACTAGCTGTGAGTGAGAT+TGG | + | chr1_2:58830479-58830498 | None:intergenic | 40.0% | |
| CACTCACAGCTAGTTATGTA+TGG | - | chr1_2:58830483-58830502 | Msa0080580:intron | 40.0% | |
| TTTCTACCAAACACACCCAT+AGG | - | chr1_2:58830970-58830989 | Msa0080580:intron | 40.0% | |
| ! | TTTTGTGAAAATTCGGGTCG+GGG | + | chr1_2:58831034-58831053 | None:intergenic | 40.0% |
| TTTCAAACCCGGCAAAGTTT+GGG | + | chr1_2:58831071-58831090 | None:intergenic | 40.0% | |
| ! | TTTTCAAACCCGGCAAAGTT+TGG | + | chr1_2:58831072-58831091 | None:intergenic | 40.0% |
| !! | TGCGTGCTTATTTTCAAACC+CGG | + | chr1_2:58831082-58831101 | None:intergenic | 40.0% |
| ! | CGGAATTTTCTTGATAGGAG+CGG | + | chr1_2:58831139-58831158 | None:intergenic | 40.0% |
| ! | GGTCTCGGAATTTTCTTGAT+AGG | + | chr1_2:58831144-58831163 | None:intergenic | 40.0% |
| ! | TTAACTTGGCCACATCATAG+TGG | - | chr1_2:58831471-58831490 | Msa0080580:intron | 40.0% |
| TAGTGGAGTTTCCCTTAAAC+GGG | - | chr1_2:58831488-58831507 | Msa0080580:intron | 40.0% | |
| ! | ATCATAGAAAGCGCATGTCT+TGG | + | chr1_2:58831612-58831631 | None:intergenic | 40.0% |
| AGACCATAAGCCACTGAAAT+TGG | - | chr1_2:58831836-58831855 | Msa0080580:intron | 40.0% | |
| GAGTACTATGTATGAGATCC+TGG | - | chr1_2:58831877-58831896 | Msa0080580:intron | 40.0% | |
| TTCTTCTATCCTATGAAGCC+CGG | - | chr1_2:58832078-58832097 | Msa0080580:intron | 40.0% | |
| !! | GAAGTATTGGTATCCGATAC+GGG | + | chr1_2:58832125-58832144 | None:intergenic | 40.0% |
| CAATACTTCACGGATACTCT+CGG | - | chr1_2:58832136-58832155 | Msa0080580:intron | 40.0% | |
| !! | TGAAGTATCGGTATCCGATA+CGG | + | chr1_2:58832170-58832189 | None:intergenic | 40.0% |
| TATCGGATACCGATACTTCA+CGG | - | chr1_2:58832170-58832189 | Msa0080580:intron | 40.0% | |
| TAGATAGAAGCTATGAAGCC+CGG | + | chr1_2:58832589-58832608 | None:intergenic | 40.0% | |
| GATATAATGCAGCCTTGACA+TGG | + | chr1_2:58832698-58832717 | None:intergenic | 40.0% | |
| TCCCTACTCCAGTAATGAAA+TGG | - | chr1_2:58832764-58832783 | Msa0080580:intron | 40.0% | |
| CCCATTTCATTACTGGAGTA+GGG | + | chr1_2:58832768-58832787 | None:intergenic | 40.0% | |
| CCCTACTCCAGTAATGAAAT+GGG | - | chr1_2:58832765-58832784 | Msa0080580:intron | 40.0% | |
| TCCCATTTCATTACTGGAGT+AGG | + | chr1_2:58832769-58832788 | None:intergenic | 40.0% | |
| ! | CATGCATGGTGAGAATGTTT+TGG | - | chr1_2:58832812-58832831 | Msa0080580:intron | 40.0% |
| CGTACATACCATGAAAGAGA+TGG | - | chr1_2:58832895-58832914 | Msa0080580:intron | 40.0% | |
| TAATAAAATGTTGGAGGGGG+GGG | - | chr1_2:58832988-58833007 | Msa0080580:intron | 40.0% | |
| ! | AAGTATAGGGCTGACTCATT+CGG | - | chr1_2:58833051-58833070 | Msa0080580:intron | 40.0% |
| TCAGAGGATGAAATGAGTTG+CGG | - | chr1_2:58833338-58833357 | Msa0080580:intron | 40.0% | |
| GAAATGCTCCTTCGTAAGTA+TGG | - | chr1_2:58833434-58833453 | Msa0080580:intron | 40.0% | |
| AATGCTCCTTCGTAAGTATG+GGG | - | chr1_2:58833436-58833455 | Msa0080580:intron | 40.0% | |
| !! | GGATGCAAGAAAAGCATTGA+TGG | - | chr1_2:58833520-58833539 | Msa0080580:CDS | 40.0% |
| !! | GAAAAGCATTGATGGATTGG+TGG | - | chr1_2:58833528-58833547 | Msa0080580:CDS | 40.0% |
| TTTGTCCAATGAATGGTTCG+AGG | - | chr1_2:58833689-58833708 | Msa0080580:intron | 40.0% | |
| TTTACCTCTCAACTGAACTC+CGG | - | chr1_2:58833759-58833778 | Msa0080580:intron | 40.0% | |
| TTTCCAAATGAAGGAGACTC+CGG | + | chr1_2:58833789-58833808 | None:intergenic | 40.0% | |
| CTCCTTCATTTGGAAACAGA+AGG | - | chr1_2:58833793-58833812 | Msa0080580:intron | 40.0% | |
| ACCCTTCTGTTTCCAAATGA+AGG | + | chr1_2:58833798-58833817 | None:intergenic | 40.0% | |
| ! | AGGTTCCTAGTCCATTTTGT+TGG | - | chr1_2:58833889-58833908 | Msa0080580:CDS | 40.0% |
| ! | AGAAAACTTTTGGCATGGTG+AGG | - | chr1_2:58833934-58833953 | Msa0080580:exon | 40.0% |
| TCAATCAGAGGAAAAGACAC+TGG | - | chr1_2:58834185-58834204 | Msa0080580:intron | 40.0% | |
| ! | ACCCTTTTGCTTGAATGTCA+TGG | - | chr1_2:58834339-58834358 | Msa0080580:intron | 40.0% |
| !! | TCTGGATTGGACTTTTGAGA+TGG | + | chr1_2:58834388-58834407 | None:intergenic | 40.0% |
| ! | ATAGGCGTATTGTTCTGGAT+TGG | + | chr1_2:58834401-58834420 | None:intergenic | 40.0% |
| ! | TCCTTTTCCCCAGGTTTTCT+TGG | - | chr1_2:58826960-58826979 | Msa0080580:three_prime_UTR | 45.0% |
| TCCAAGAAAACCTGGGGAAA+AGG | + | chr1_2:58826964-58826983 | None:intergenic | 45.0% | |
| CTAGCTGGAAAAGGAAAGAG+TGG | + | chr1_2:58827044-58827063 | None:intergenic | 45.0% | |
| ! | TTTCCTTTTCCAGCTAGCTG+AGG | - | chr1_2:58827047-58827066 | Msa0080580:three_prime_UTR | 45.0% |
| ! | AGTGGGTCATATTGATGGCA+AGG | - | chr1_2:58827499-58827518 | Msa0080580:intron | 45.0% |
| CAGGATCATCTCCTATCTCA+CGG | + | chr1_2:58827996-58828015 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCATTGAAGGGCT+TGG | + | chr1_2:58828243-58828262 | None:intergenic | 45.0% |
| TCATCCGATTACAACCGTTC+AGG | - | chr1_2:58828323-58828342 | Msa0080580:intron | 45.0% | |
| GAAAAGGGCCATTCATGTTC+AGG | + | chr1_2:58828467-58828486 | None:intergenic | 45.0% | |
| !! | CAAGTGTCGAGTGTAGACTT+TGG | + | chr1_2:58828850-58828869 | None:intergenic | 45.0% |
| !! | TCCAGGGCACCATATTTTCA+GGG | + | chr1_2:58829208-58829227 | None:intergenic | 45.0% |
| TCGGTACACTTTGTACGAGA+TGG | - | chr1_2:58829780-58829799 | Msa0080580:intron | 45.0% | |
| GTAAGCAATTAGTGGGAACG+TGG | + | chr1_2:58830451-58830470 | None:intergenic | 45.0% | |
| TATAGCTGATGGCTGATAGC+TGG | + | chr1_2:58830895-58830914 | None:intergenic | 45.0% | |
| TTTGTGAAAATTCGGGTCGG+GGG | + | chr1_2:58831033-58831052 | None:intergenic | 45.0% | |
| CATTTGTCCCCAAACTTTGC+CGG | - | chr1_2:58831060-58831079 | Msa0080580:intron | 45.0% | |
| ATTTGTCCCCAAACTTTGCC+GGG | - | chr1_2:58831061-58831080 | Msa0080580:intron | 45.0% | |
| TTCAAACCCGGCAAAGTTTG+GGG | + | chr1_2:58831070-58831089 | None:intergenic | 45.0% | |
| GTACATATCACCCACCAAAG+AGG | - | chr1_2:58831270-58831289 | Msa0080580:intron | 45.0% | |
| AGTCCTACCCACAACTTTGT+GGG | - | chr1_2:58831312-58831331 | Msa0080580:intron | 45.0% | |
| TGACTCACCCACAAAGTTGT+GGG | + | chr1_2:58831322-58831341 | None:intergenic | 45.0% | |
| TTGACTCACCCACAAAGTTG+TGG | + | chr1_2:58831323-58831342 | None:intergenic | 45.0% | |
| !! | GACTTGACTCATAACGGGTA+AGG | + | chr1_2:58831439-58831458 | None:intergenic | 45.0% |
| AGGGAAACTCCACTATGATG+TGG | + | chr1_2:58831483-58831502 | None:intergenic | 45.0% | |
| AGTGGAGTTTCCCTTAAACG+GGG | - | chr1_2:58831489-58831508 | Msa0080580:intron | 45.0% | |
| GGACCAATTTCAGTGGCTTA+TGG | + | chr1_2:58831842-58831861 | None:intergenic | 45.0% | |
| !! | CGAGAGTATCCGTGAAGTAT+TGG | + | chr1_2:58832138-58832157 | None:intergenic | 45.0% |
| !! | GAAGTATCGGTATCCGATAC+GGG | + | chr1_2:58832169-58832188 | None:intergenic | 45.0% |
| !! | CGAGAGTATCCGTGAAGTAT+CGG | + | chr1_2:58832138-58832157 | None:intergenic | 45.0% |
| CGATACTTCACGGATACTCT+CGG | - | chr1_2:58832180-58832199 | Msa0080580:intron | 45.0% | |
| AATGCAGCCTTGACATGGAA+AGG | + | chr1_2:58832693-58832712 | None:intergenic | 45.0% | |
| GATTGGGACCATCTCTTTCA+TGG | + | chr1_2:58832906-58832925 | None:intergenic | 45.0% | |
| GGATGAAATGAGTTGCGGAA+AGG | - | chr1_2:58833343-58833362 | Msa0080580:intron | 45.0% | |
| GGAAAGGTTGAAGCAGTAGA+AGG | - | chr1_2:58833359-58833378 | Msa0080580:intron | 45.0% | |
| AAGGTTGAAGCAGTAGAAGG+TGG | - | chr1_2:58833362-58833381 | Msa0080580:intron | 45.0% | |
| GGTGGTCATGATGAACTTTG+TGG | - | chr1_2:58833380-58833399 | Msa0080580:intron | 45.0% | |
| ATGCTCCTTCGTAAGTATGG+GGG | - | chr1_2:58833437-58833456 | Msa0080580:intron | 45.0% | |
| ATTGGTGGAACGTCCACTAT+AGG | - | chr1_2:58833543-58833562 | Msa0080580:CDS | 45.0% | |
| TAATCCGGAGTTCAGTTGAG+AGG | + | chr1_2:58833766-58833785 | None:intergenic | 45.0% | |
| TCAACTGAACTCCGGATTAC+CGG | - | chr1_2:58833767-58833786 | Msa0080580:intron | 45.0% | |
| TTACCGGAGTCTCCTTCATT+TGG | - | chr1_2:58833783-58833802 | Msa0080580:intron | 45.0% | |
| ACAGACCTACTCAGTGACAT+AGG | + | chr1_2:58834451-58834470 | None:intergenic | 45.0% | |
| ! | AAGTTTCTTGCTAGAGGTGC+AGG | - | chr1_2:58834619-58834638 | Msa0080580:five_prime_UTR | 45.0% |
| !! | ATAATAATATTATATGAATA+TGG | - | chr1_2:58827110-58827129 | Msa0080580:three_prime_UTR | 5.0% |
| !! | TTATTAATTGTTTAAATTAT+TGG | - | chr1_2:58827264-58827283 | Msa0080580:CDS | 5.0% |
| !!! | TTTTATTAAATATTTTATAG+TGG | + | chr1_2:58828951-58828970 | None:intergenic | 5.0% |
| !! | ATAATAAAATTAAATTAACA+AGG | + | chr1_2:58830407-58830426 | None:intergenic | 5.0% |
| !! | AAAAAAAATCAATATAAAAT+GGG | + | chr1_2:58831775-58831794 | None:intergenic | 5.0% |
| ! | TCCTCTCTTTCCTTTTCCCC+AGG | - | chr1_2:58826951-58826970 | Msa0080580:three_prime_UTR | 50.0% |
| ACCTGGGGAAAAGGAAAGAG+AGG | + | chr1_2:58826955-58826974 | None:intergenic | 50.0% | |
| GAAAGAGTGGAAAGCTGGGT+TGG | + | chr1_2:58827031-58827050 | None:intergenic | 50.0% | |
| GAACCTCAGCTAGCTGGAAA+AGG | + | chr1_2:58827053-58827072 | None:intergenic | 50.0% | |
| TACAGCATCAAGACCCGTGT+AGG | + | chr1_2:58827166-58827185 | None:intergenic | 50.0% | |
| TCTGCTGCTGGATTGCATCT+AGG | - | chr1_2:58827539-58827558 | Msa0080580:intron | 50.0% | |
| AAAGAGGGTGAGTTGCGATC+TGG | + | chr1_2:58827654-58827673 | None:intergenic | 50.0% | |
| TCCTGACCTTGACCACTTCA+TGG | - | chr1_2:58828011-58828030 | Msa0080580:CDS | 50.0% | |
| ACCATGAAGTGGTCAAGGTC+AGG | + | chr1_2:58828015-58828034 | None:intergenic | 50.0% | |
| ACCATCTCATGATTCGCCCA+AGG | + | chr1_2:58828677-58828696 | None:intergenic | 50.0% | |
| !! | CCAGGGCACCATATTTTCAG+GGG | + | chr1_2:58829207-58829226 | None:intergenic | 50.0% |
| !! | GTCCAGGGCACCATATTTTC+AGG | + | chr1_2:58829209-58829228 | None:intergenic | 50.0% |
| TTAGCTGTGGTCCTGAGCAT+GGG | + | chr1_2:58829246-58829265 | None:intergenic | 50.0% | |
| TTTAGCTGTGGTCCTGAGCA+TGG | + | chr1_2:58829247-58829266 | None:intergenic | 50.0% | |
| CCAAACACACCCATAGGCAA+CGG | - | chr1_2:58830976-58830995 | Msa0080580:intron | 50.0% | |
| CAAACACACCCATAGGCAAC+GGG | - | chr1_2:58830977-58830996 | Msa0080580:intron | 50.0% | |
| AAACACACCCATAGGCAACG+GGG | - | chr1_2:58830978-58830997 | Msa0080580:intron | 50.0% | |
| TTCTTGATAGGAGCGGTACG+AGG | + | chr1_2:58831132-58831151 | None:intergenic | 50.0% | |
| AATGCGAGGACCTCTTTGGT+GGG | + | chr1_2:58831283-58831302 | None:intergenic | 50.0% | |
| TACCAATGCGAGGACCTCTT+TGG | + | chr1_2:58831287-58831306 | None:intergenic | 50.0% | |
| GAGTCCTACCCACAACTTTG+TGG | - | chr1_2:58831311-58831330 | Msa0080580:intron | 50.0% | |
| TCACCCACAAAGTTGTGGGT+AGG | + | chr1_2:58831318-58831337 | None:intergenic | 50.0% | |
| !! | GACTCATAACGGGTAAGGTG+AGG | + | chr1_2:58831434-58831453 | None:intergenic | 50.0% |
| ACCAAATCCGCCCCGTTTAA+GGG | + | chr1_2:58831502-58831521 | None:intergenic | 50.0% | |
| ! | TTAAACGGGGCGGATTTGGT+CGG | - | chr1_2:58831502-58831521 | Msa0080580:intron | 50.0% |
| AATGGAGACGGTTTGAACCC+AGG | + | chr1_2:58831898-58831917 | None:intergenic | 50.0% | |
| ! | TTGGAGTATCCGGGCTTCAT+AGG | + | chr1_2:58832090-58832109 | None:intergenic | 50.0% |
| GAAGCCCGGATACTCCAAAA+CGG | - | chr1_2:58832092-58832111 | Msa0080580:intron | 50.0% | |
| !!! | GTGTCCGTTTTGGAGTATCC+GGG | + | chr1_2:58832099-58832118 | None:intergenic | 50.0% |
| !!! | CGTGTCCGTTTTGGAGTATC+CGG | + | chr1_2:58832100-58832119 | None:intergenic | 50.0% |
| ! | ATACGGGTACGTGTCCGTTT+TGG | + | chr1_2:58832109-58832128 | None:intergenic | 50.0% |
| AAACGGACACGTACCCGTAT+CGG | - | chr1_2:58832109-58832128 | Msa0080580:intron | 50.0% | |
| TCTCGGATACGTACCCGTAT+CGG | - | chr1_2:58832153-58832172 | Msa0080580:intron | 50.0% | |
| GTGCGGGTATGATACGATAC+AGG | + | chr1_2:58832554-58832573 | None:intergenic | 50.0% | |
| CCGGATACTGATATGAGTGC+GGG | + | chr1_2:58832570-58832589 | None:intergenic | 50.0% | |
| CCCGCACTCATATCAGTATC+CGG | - | chr1_2:58832567-58832586 | Msa0080580:intron | 50.0% | |
| CCCGGATACTGATATGAGTG+CGG | + | chr1_2:58832571-58832590 | None:intergenic | 50.0% | |
| CCGCACTCATATCAGTATCC+GGG | - | chr1_2:58832568-58832587 | Msa0080580:intron | 50.0% | |
| CTTTGTGGCACATCATGTCC+AGG | - | chr1_2:58833395-58833414 | Msa0080580:intron | 50.0% | |
| GGTAACCCCCATACTTACGA+AGG | + | chr1_2:58833445-58833464 | None:intergenic | 50.0% | |
| TGGGATAAGGCCACCTATAG+TGG | + | chr1_2:58833559-58833578 | None:intergenic | 50.0% | |
| !! | CTATAGGTGGCCTTATCCCA+CGG | - | chr1_2:58833559-58833578 | Msa0080580:CDS | 50.0% |
| TGAAGGAGACTCCGGTAATC+CGG | + | chr1_2:58833781-58833800 | None:intergenic | 50.0% | |
| CTGCAGCTGTCAGATATGAC+TGG | - | chr1_2:58834130-58834149 | Msa0080580:intron | 50.0% | |
| GTAAGTAGCACCAGCATAGC+AGG | - | chr1_2:58834247-58834266 | Msa0080580:intron | 50.0% | |
| TTACAGAGGTCCTGCTATGC+TGG | + | chr1_2:58834260-58834279 | None:intergenic | 50.0% | |
| AGGGCATAGGCGTATTGTTC+TGG | + | chr1_2:58834406-58834425 | None:intergenic | 50.0% | |
| CTACTCAGTGACATAGGTGC+CGG | + | chr1_2:58834445-58834464 | None:intergenic | 50.0% | |
| GCTGCTGGATTGCATCTAGG+AGG | - | chr1_2:58827542-58827561 | Msa0080580:intron | 55.0% | |
| GCCTTGGGCGAATCATGAGA+TGG | - | chr1_2:58828673-58828692 | Msa0080580:intron | 55.0% | |
| CCCCTGAAAATATGGTGCCC+TGG | - | chr1_2:58829204-58829223 | Msa0080580:intron | 55.0% | |
| GCAATTAGTGGGAACGTGGG+TGG | + | chr1_2:58830447-58830466 | None:intergenic | 55.0% | |
| CCGTTGCCTATGGGTGTGTT+TGG | + | chr1_2:58830979-58830998 | None:intergenic | 55.0% | |
| TAACCCACCCCGTTGCCTAT+GGG | + | chr1_2:58830988-58831007 | None:intergenic | 55.0% | |
| !! | ATAGGCAACGGGGTGGGTTA+GGG | - | chr1_2:58830988-58831007 | Msa0080580:intron | 55.0% |
| AGGAGCGGTACGAGGAAACT+CGG | + | chr1_2:58831124-58831143 | None:intergenic | 55.0% | |
| CAATGCGAGGACCTCTTTGG+TGG | + | chr1_2:58831284-58831303 | None:intergenic | 55.0% | |
| CACCAAAGAGGTCCTCGCAT+TGG | - | chr1_2:58831282-58831301 | Msa0080580:intron | 55.0% | |
| GGACTCATGCTACCAATGCG+AGG | + | chr1_2:58831297-58831316 | None:intergenic | 55.0% | |
| GGAGTTTCCCTTAAACGGGG+CGG | - | chr1_2:58831492-58831511 | Msa0080580:intron | 55.0% | |
| ! | TCCCTTAAACGGGGCGGATT+TGG | - | chr1_2:58831498-58831517 | Msa0080580:intron | 55.0% |
| GACCAAATCCGCCCCGTTTA+AGG | + | chr1_2:58831503-58831522 | None:intergenic | 55.0% | |
| ! | TAAACGGGGCGGATTTGGTC+GGG | - | chr1_2:58831503-58831522 | Msa0080580:intron | 55.0% |
| ! | GGATTTGGTCGGGTTTGGGT+AGG | - | chr1_2:58831513-58831532 | Msa0080580:intron | 55.0% |
| TTTGGTCGGGTTTGGGTAGG+TGG | - | chr1_2:58831516-58831535 | Msa0080580:intron | 55.0% | |
| TTGGTCGGGTTTGGGTAGGT+GGG | - | chr1_2:58831517-58831536 | Msa0080580:intron | 55.0% | |
| GGTCAGATCATGAGGCAGCA+GGG | - | chr1_2:58833312-58833331 | Msa0080580:CDS | 55.0% | |
| GGTGGAACGTCCACTATAGG+TGG | - | chr1_2:58833546-58833565 | Msa0080580:CDS | 55.0% | |
| CGGCACCTATGTCACTGAGT+AGG | - | chr1_2:58834443-58834462 | Msa0080580:intron | 55.0% | |
| AGGACAGATGGTCGTGACGC+GGG | + | chr1_2:58828601-58828620 | None:intergenic | 60.0% | |
| GAGGACAGATGGTCGTGACG+CGG | + | chr1_2:58828602-58828621 | None:intergenic | 60.0% | |
| ACACCCATAGGCAACGGGGT+GGG | - | chr1_2:58830982-58831001 | Msa0080580:intron | 60.0% | |
| CTAACCCACCCCGTTGCCTA+TGG | + | chr1_2:58830989-58831008 | None:intergenic | 60.0% | |
| ! | CATAGGCAACGGGGTGGGTT+AGG | - | chr1_2:58830987-58831006 | Msa0080580:intron | 60.0% |
| !! | TAGGCAACGGGGTGGGTTAG+GGG | - | chr1_2:58830989-58831008 | Msa0080580:intron | 60.0% |
| CACGCATTTCCGCCCCCAAT+CGG | - | chr1_2:58831096-58831115 | Msa0080580:intron | 60.0% | |
| ACGCATTTCCGCCCCCAATC+GGG | - | chr1_2:58831097-58831116 | Msa0080580:intron | 60.0% | |
| AGGAAACTCGGCCCCGATTG+GGG | + | chr1_2:58831112-58831131 | None:intergenic | 60.0% | |
| GAGGAAACTCGGCCCCGATT+GGG | + | chr1_2:58831113-58831132 | None:intergenic | 60.0% | |
| ! | GGGCGGATTTGGTCGGGTTT+GGG | - | chr1_2:58831509-58831528 | Msa0080580:intron | 60.0% |
| GGGTCAGATCATGAGGCAGC+AGG | - | chr1_2:58833311-58833330 | Msa0080580:CDS | 60.0% | |
| TGAGGCAGCAGGGACATCAG+AGG | - | chr1_2:58833322-58833341 | Msa0080580:intron | 60.0% | |
| !! | GCTGGGTTGGCTACAGCACC+TGG | + | chr1_2:58827018-58827037 | None:intergenic | 65.0% |
| TGGTCCTGAGCATGGGCCGA+GGG | + | chr1_2:58829239-58829258 | None:intergenic | 65.0% | |
| CACACCCATAGGCAACGGGG+TGG | - | chr1_2:58830981-58831000 | Msa0080580:intron | 65.0% | |
| CGCATTTCCGCCCCCAATCG+GGG | - | chr1_2:58831098-58831117 | Msa0080580:intron | 65.0% | |
| GGAAACTCGGCCCCGATTGG+GGG | + | chr1_2:58831111-58831130 | None:intergenic | 65.0% | |
| CGAGGAAACTCGGCCCCGAT+TGG | + | chr1_2:58831114-58831133 | None:intergenic | 65.0% | |
| ! | GGGGCGGATTTGGTCGGGTT+TGG | - | chr1_2:58831508-58831527 | Msa0080580:intron | 65.0% |
| GTCCTGAGCATGGGCCGAGG+GGG | + | chr1_2:58829237-58829256 | None:intergenic | 70.0% | |
| GGTCCTGAGCATGGGCCGAG+GGG | + | chr1_2:58829238-58829257 | None:intergenic | 70.0% | |
| GTGGTCCTGAGCATGGGCCG+AGG | + | chr1_2:58829240-58829259 | None:intergenic | 70.0% | |
| AACTCGGCCCCGATTGGGGG+CGG | + | chr1_2:58831108-58831127 | None:intergenic | 70.0% | |
| GCCCTGGACTGCCTCCCCCT+CGG | - | chr1_2:58829220-58829239 | Msa0080580:intron | 75.0% | |
| GCCGAGGGGGAGGCAGTCCA+GGG | + | chr1_2:58829224-58829243 | None:intergenic | 75.0% | |
| CTGAGCATGGGCCGAGGGGG+AGG | + | chr1_2:58829234-58829253 | None:intergenic | 75.0% | |
| CTCCCCCTCGGCCCATGCTC+AGG | - | chr1_2:58829232-58829251 | Msa0080580:intron | 75.0% | |
| ! | GGCCGAGGGGGAGGCAGTCC+AGG | + | chr1_2:58829225-58829244 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 58826865 | 58834672 | 58826865 | ID=Msa0080580;Name=Msa0080580 |
| chr1_2 | mRNA | 58826865 | 58834672 | 58826865 | ID=Msa0080580-mRNA-1;Parent=Msa0080580;Name=Msa0080580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=295|1|1|1|0.8|0.83|6|393|267 |
| chr1_2 | exon | 58826865 | 58827419 | 58826865 | ID=Msa0080580-mRNA-1:exon:18958;Parent=Msa0080580-mRNA-1 |
| chr1_2 | exon | 58827957 | 58828219 | 58827957 | ID=Msa0080580-mRNA-1:exon:18957;Parent=Msa0080580-mRNA-1 |
| chr1_2 | exon | 58833193 | 58833340 | 58833193 | ID=Msa0080580-mRNA-1:exon:18956;Parent=Msa0080580-mRNA-1 |
| chr1_2 | exon | 58833505 | 58833615 | 58833505 | ID=Msa0080580-mRNA-1:exon:18955;Parent=Msa0080580-mRNA-1 |
| chr1_2 | exon | 58833826 | 58834036 | 58833826 | ID=Msa0080580-mRNA-1:exon:18954;Parent=Msa0080580-mRNA-1 |
| chr1_2 | exon | 58834469 | 58834672 | 58834469 | ID=Msa0080580-mRNA-1:exon:18953;Parent=Msa0080580-mRNA-1 |
| chr1_2 | five_prime_UTR | 58834469 | 58834672 | 58834469 | ID=Msa0080580-mRNA-1:five_prime_utr;Parent=Msa0080580-mRNA-1 |
| chr1_2 | five_prime_UTR | 58833946 | 58834036 | 58833946 | ID=Msa0080580-mRNA-1:five_prime_utr;Parent=Msa0080580-mRNA-1 |
| chr1_2 | CDS | 58833826 | 58833945 | 58833826 | ID=Msa0080580-mRNA-1:cds;Parent=Msa0080580-mRNA-1 |
| chr1_2 | CDS | 58833505 | 58833615 | 58833505 | ID=Msa0080580-mRNA-1:cds;Parent=Msa0080580-mRNA-1 |
| chr1_2 | CDS | 58833193 | 58833340 | 58833193 | ID=Msa0080580-mRNA-1:cds;Parent=Msa0080580-mRNA-1 |
| chr1_2 | CDS | 58827957 | 58828219 | 58827957 | ID=Msa0080580-mRNA-1:cds;Parent=Msa0080580-mRNA-1 |
| chr1_2 | CDS | 58827258 | 58827419 | 58827258 | ID=Msa0080580-mRNA-1:cds;Parent=Msa0080580-mRNA-1 |
| chr1_2 | three_prime_UTR | 58826865 | 58827257 | 58826865 | ID=Msa0080580-mRNA-1:three_prime_utr;Parent=Msa0080580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
