Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1087650 | AES61472.2 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 545 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1087650 | sp|Q9FP29|KNOS1_ORYSJ | 58.268 | 254 | 99 | 3 | 12 | 262 | 38 | 287 | 2.94e-90 | 272 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1087650 | G7I9I1 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 545 |
Gene ID | Type | Classification |
---|---|---|
Msa1087650 | TF | HB-KNOX |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000050 | Msa1087650 | 0.833634 | 4.765265e-56 | -8.615850e-47 |
Msa0001940 | Msa1087650 | 0.838781 | 2.345213e-57 | -8.615850e-47 |
Msa0001960 | Msa1087650 | 0.801614 | 8.286834e-49 | -8.615850e-47 |
Msa0005890 | Msa1087650 | 0.804732 | 1.875232e-49 | -8.615850e-47 |
Msa0017670 | Msa1087650 | 0.830837 | 2.345742e-55 | -8.615850e-47 |
Msa0017950 | Msa1087650 | 0.830761 | 2.448417e-55 | -8.615850e-47 |
Msa0024550 | Msa1087650 | 0.829900 | 3.974739e-55 | -8.615850e-47 |
Msa0027820 | Msa1087650 | 0.824362 | 8.411675e-54 | -8.615850e-47 |
Msa0035120 | Msa1087650 | 0.824486 | 7.863283e-54 | -8.615850e-47 |
Msa0042610 | Msa1087650 | 0.808198 | 3.484633e-50 | -8.615850e-47 |
Msa0080580 | Msa1087650 | 0.951346 | 2.477708e-109 | -8.615850e-47 |
Msa0092790 | Msa1087650 | 0.828537 | 8.507263e-55 | -8.615850e-47 |
Msa0097770 | Msa1087650 | 0.835344 | 1.772113e-56 | -8.615850e-47 |
Msa0098040 | Msa1087650 | 0.855675 | 5.381890e-62 | -8.615850e-47 |
Msa0117140 | Msa1087650 | 0.810483 | 1.127246e-50 | -8.615850e-47 |
Msa0120400 | Msa1087650 | 0.829766 | 4.282935e-55 | -8.615850e-47 |
Msa0614000 | Msa1087650 | 0.813916 | 2.009013e-51 | -8.615850e-47 |
Msa0624900 | Msa1087650 | 0.800708 | 1.269603e-48 | -8.615850e-47 |
Msa0637560 | Msa1087650 | 0.804849 | 1.773034e-49 | -8.615850e-47 |
Msa0637580 | Msa1087650 | 0.804004 | 2.660049e-49 | -8.615850e-47 |
Msa0638480 | Msa1087650 | 0.827447 | 1.556649e-54 | -8.615850e-47 |
Msa0679870 | Msa1087650 | 0.800276 | 1.555004e-48 | -8.615850e-47 |
Msa0693330 | Msa1087650 | 0.805978 | 1.028133e-49 | -8.615850e-47 |
Msa0725000 | Msa1087650 | 0.819435 | 1.162972e-52 | -8.615850e-47 |
Msa0752450 | Msa1087650 | 0.803007 | 4.280812e-49 | -8.615850e-47 |
Msa0762910 | Msa1087650 | 0.824675 | 7.097890e-54 | -8.615850e-47 |
Msa0765270 | Msa1087650 | 0.809208 | 2.119575e-50 | -8.615850e-47 |
Msa0769180 | Msa1087650 | 0.813188 | 2.904787e-51 | -8.615850e-47 |
Msa0792370 | Msa1087650 | 0.829066 | 6.336578e-55 | -8.615850e-47 |
Msa0795870 | Msa1087650 | 0.821021 | 5.038736e-53 | -8.615850e-47 |
Msa0805330 | Msa1087650 | 0.846791 | 1.739215e-59 | -8.615850e-47 |
Msa0829330 | Msa1087650 | 0.812304 | 4.535689e-51 | -8.615850e-47 |
Msa0833530 | Msa1087650 | 0.811671 | 6.229218e-51 | -8.615850e-47 |
Msa0833650 | Msa1087650 | 0.823013 | 1.740417e-53 | -8.615850e-47 |
Msa0124060 | Msa1087650 | 0.806310 | 8.754736e-50 | -8.615850e-47 |
Msa0131900 | Msa1087650 | 0.807117 | 5.911086e-50 | -8.615850e-47 |
Msa0164330 | Msa1087650 | 0.820728 | 5.882562e-53 | -8.615850e-47 |
Msa0168500 | Msa1087650 | 0.803838 | 2.879288e-49 | -8.615850e-47 |
Msa0175930 | Msa1087650 | 0.807469 | 4.977679e-50 | -8.615850e-47 |
Msa0186010 | Msa1087650 | 0.994909 | 2.834739e-211 | -8.615850e-47 |
Msa0197100 | Msa1087650 | 0.841247 | 5.335493e-58 | -8.615850e-47 |
Msa0199520 | Msa1087650 | 0.801880 | 7.306631e-49 | -8.615850e-47 |
Msa0214550 | Msa1087650 | 0.820448 | 6.823357e-53 | -8.615850e-47 |
Msa0221000 | Msa1087650 | 0.832990 | 6.893729e-56 | -8.615850e-47 |
Msa0224780 | Msa1087650 | 0.802594 | 5.209502e-49 | -8.615850e-47 |
Msa0225100 | Msa1087650 | 0.821680 | 3.548960e-53 | -8.615850e-47 |
Msa0225860 | Msa1087650 | 0.806182 | 9.313505e-50 | -8.615850e-47 |
Msa0378720 | Msa1087650 | 0.833906 | 4.074748e-56 | -8.615850e-47 |
Msa0406770 | Msa1087650 | 0.812589 | 3.928618e-51 | -8.615850e-47 |
Msa0427100 | Msa1087650 | 0.805073 | 1.591577e-49 | -8.615850e-47 |
Msa0427120 | Msa1087650 | 0.806623 | 7.518579e-50 | -8.615850e-47 |
Msa0428370 | Msa1087650 | 0.823107 | 1.654639e-53 | -8.615850e-47 |
Msa0428920 | Msa1087650 | 0.811179 | 7.968304e-51 | -8.615850e-47 |
Msa0450400 | Msa1087650 | -0.822247 | 2.623118e-53 | -8.615850e-47 |
Msa0474730 | Msa1087650 | 0.817800 | 2.731928e-52 | -8.615850e-47 |
Msa0479200 | Msa1087650 | 0.802390 | 5.738058e-49 | -8.615850e-47 |
Msa1029070 | Msa1087650 | 0.815588 | 8.561552e-52 | -8.615850e-47 |
Msa1043370 | Msa1087650 | 0.827526 | 1.490050e-54 | -8.615850e-47 |
Msa1074220 | Msa1087650 | 0.801997 | 6.913700e-49 | -8.615850e-47 |
Msa1087650 | Msa1089450 | 0.835387 | 1.729006e-56 | -8.615850e-47 |
Msa1087650 | Msa1132840 | 0.817389 | 3.382436e-52 | -8.615850e-47 |
Msa1087650 | Msa1145580 | 0.808055 | 3.738082e-50 | -8.615850e-47 |
Msa1087650 | Msa1155170 | -0.804620 | 1.979031e-49 | -8.615850e-47 |
Msa1087650 | Msa1156160 | 0.810746 | 9.889379e-51 | -8.615850e-47 |
Msa1087650 | Msa1162770 | 0.804168 | 2.458390e-49 | -8.615850e-47 |
Msa1087650 | Msa1211230 | -0.801415 | 9.101551e-49 | -8.615850e-47 |
Msa1087650 | Msa1225860 | -0.815501 | 8.949140e-52 | -8.615850e-47 |
Msa1087650 | Msa1228200 | 0.835592 | 1.533672e-56 | -8.615850e-47 |
Msa1087650 | Msa1236410 | 0.806518 | 7.910475e-50 | -8.615850e-47 |
Msa1087650 | Msa1238820 | 0.811778 | 5.904138e-51 | -8.615850e-47 |
Msa1087650 | Msa1267770 | 0.836598 | 8.518396e-57 | -8.615850e-47 |
Msa1087650 | Msa1285550 | 0.806304 | 8.776779e-50 | -8.615850e-47 |
Msa1087650 | Msa1297230 | 0.816310 | 5.906162e-52 | -8.615850e-47 |
Msa1087650 | Msa1303560 | 0.806729 | 7.142527e-50 | -8.615850e-47 |
Msa1087650 | Msa1303650 | 0.801397 | 9.180616e-49 | -8.615850e-47 |
Msa1087650 | Msa1320670 | 0.803313 | 3.700219e-49 | -8.615850e-47 |
Msa1087650 | Msa1343430 | 0.819702 | 1.010871e-52 | -8.615850e-47 |
Msa1087650 | Msa1355450 | 0.803094 | 4.107837e-49 | -8.615850e-47 |
Msa1087650 | Msa1357790 | 0.953238 | 4.255015e-111 | -8.615850e-47 |
Msa1087650 | Msa1366340 | 0.819255 | 1.278715e-52 | -8.615850e-47 |
Msa1087650 | Msa1373100 | 0.815173 | 1.059000e-51 | -8.615850e-47 |
Msa1087650 | Msa1385890 | 0.804705 | 1.899729e-49 | -8.615850e-47 |
Msa1087650 | Msa1392900 | 0.804538 | 2.059234e-49 | -8.615850e-47 |
Msa1087650 | Msa1422950 | 0.815176 | 1.056931e-51 | -8.615850e-47 |
Msa1087650 | Msa1425880 | 0.820670 | 6.067809e-53 | -8.615850e-47 |
Msa0239030 | Msa1087650 | 0.854324 | 1.327641e-61 | -8.615850e-47 |
Msa0240900 | Msa1087650 | 0.843289 | 1.535879e-58 | -8.615850e-47 |
Msa0244640 | Msa1087650 | 0.835947 | 1.246782e-56 | -8.615850e-47 |
Msa0259220 | Msa1087650 | 0.804145 | 2.486167e-49 | -8.615850e-47 |
Msa0265850 | Msa1087650 | 0.824569 | 7.517525e-54 | -8.615850e-47 |
Msa0266180 | Msa1087650 | 0.833604 | 4.847693e-56 | -8.615850e-47 |
Msa0276740 | Msa1087650 | 0.860170 | 2.488795e-63 | -8.615850e-47 |
Msa0279850 | Msa1087650 | 0.801348 | 9.395754e-49 | -8.615850e-47 |
Msa0283330 | Msa1087650 | 0.820491 | 6.668452e-53 | -8.615850e-47 |
Msa0287740 | Msa1087650 | 0.826066 | 3.325511e-54 | -8.615850e-47 |
Msa0298410 | Msa1087650 | 0.844550 | 7.052611e-59 | -8.615850e-47 |
Msa0300240 | Msa1087650 | 0.802324 | 5.922759e-49 | -8.615850e-47 |
Msa0300270 | Msa1087650 | 0.827502 | 1.510087e-54 | -8.615850e-47 |
Msa0300320 | Msa1087650 | 0.839361 | 1.659136e-57 | -8.615850e-47 |
Msa0307670 | Msa1087650 | 0.832156 | 1.109904e-55 | -8.615850e-47 |
Msa0316680 | Msa1087650 | 0.842528 | 2.447151e-58 | -8.615850e-47 |
Msa0317970 | Msa1087650 | 0.825967 | 3.511524e-54 | -8.615850e-47 |
Msa0321620 | Msa1087650 | 0.815049 | 1.128276e-51 | -8.615850e-47 |
Msa0337580 | Msa1087650 | 0.819353 | 1.214550e-52 | -8.615850e-47 |
Msa0337700 | Msa1087650 | 0.838690 | 2.475907e-57 | -8.615850e-47 |
Msa0339500 | Msa1087650 | 0.800857 | 1.184019e-48 | -8.615850e-47 |
Msa0344930 | Msa1087650 | 0.801745 | 7.789458e-49 | -8.615850e-47 |
Msa0360210 | Msa1087650 | 0.816988 | 4.162987e-52 | -8.615850e-47 |
Msa0519830 | Msa1087650 | 0.808160 | 3.550600e-50 | -8.615850e-47 |
Msa0527190 | Msa1087650 | 0.802636 | 5.105985e-49 | -8.615850e-47 |
Msa0530780 | Msa1087650 | 0.810039 | 1.405014e-50 | -8.615850e-47 |
Msa0572840 | Msa1087650 | 0.805221 | 1.482239e-49 | -8.615850e-47 |
Msa0580370 | Msa1087650 | 0.819025 | 1.442027e-52 | -8.615850e-47 |
Msa0581470 | Msa1087650 | 0.832270 | 1.040374e-55 | -8.615850e-47 |
Msa0583360 | Msa1087650 | -0.809648 | 1.705325e-50 | -8.615850e-47 |
Msa0597790 | Msa1087650 | 0.832072 | 1.164743e-55 | -8.615850e-47 |
Msa0842680 | Msa1087650 | 0.831619 | 1.506702e-55 | -8.615850e-47 |
Msa0845110 | Msa1087650 | 0.815242 | 1.021897e-51 | -8.615850e-47 |
Msa0861510 | Msa1087650 | 0.809636 | 1.715998e-50 | -8.615850e-47 |
Msa0861600 | Msa1087650 | 0.817593 | 3.043415e-52 | -8.615850e-47 |
Msa0967380 | Msa1087650 | 0.852412 | 4.697078e-61 | -8.615850e-47 |
Msa0967870 | Msa1087650 | 0.823481 | 1.353403e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1087650 | MtrunA17_Chr1g0192791 | 97.761 | 268 | 5 | 1 | 1 | 267 | 1 | 268 | 0.0 | 544 |
Msa1087650 | MtrunA17_Chr5g0413201 | 53.307 | 257 | 104 | 4 | 9 | 259 | 63 | 309 | 8.64e-84 | 253 |
Msa1087650 | MtrunA17_Chr1g0151961 | 48.810 | 252 | 116 | 4 | 18 | 264 | 119 | 362 | 1.69e-70 | 221 |
Msa1087650 | MtrunA17_Chr5g0439391 | 48.996 | 249 | 102 | 4 | 19 | 259 | 47 | 278 | 4.25e-68 | 213 |
Msa1087650 | MtrunA17_Chr2g0289201 | 50.617 | 243 | 106 | 4 | 18 | 256 | 117 | 349 | 4.42e-66 | 210 |
Msa1087650 | MtrunA17_Chr3g0137241 | 35.249 | 261 | 122 | 8 | 19 | 244 | 107 | 355 | 1.96e-37 | 135 |
Msa1087650 | MtrunA17_Chr1g0149651 | 34.538 | 249 | 138 | 6 | 19 | 244 | 174 | 420 | 2.16e-37 | 136 |
Msa1087650 | MtrunA17_Chr5g0398181 | 33.597 | 253 | 145 | 4 | 15 | 244 | 24 | 276 | 1.49e-36 | 131 |
Msa1087650 | MtrunA17_Chr4g0065241 | 33.065 | 248 | 147 | 4 | 16 | 244 | 68 | 315 | 2.77e-36 | 131 |
Msa1087650 | MtrunA17_Chr2g0305101 | 34.274 | 248 | 138 | 6 | 19 | 244 | 95 | 339 | 3.37e-35 | 129 |
Msa1087650 | MtrunA17_Chr6g0479181 | 34.906 | 106 | 67 | 1 | 15 | 120 | 64 | 167 | 8.26e-13 | 65.5 |
Msa1087650 | MtrunA17_Chr7g0240371 | 38.356 | 73 | 43 | 1 | 174 | 246 | 296 | 366 | 5.07e-11 | 62.4 |
Msa1087650 | MtrunA17_Chr4g0008591 | 42.466 | 73 | 39 | 2 | 174 | 246 | 352 | 421 | 5.83e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1087650 | AT1G23380.1 | 50.794 | 252 | 104 | 4 | 17 | 261 | 84 | 322 | 2.38e-82 | 250 |
Msa1087650 | AT1G70510.1 | 50.201 | 249 | 110 | 3 | 17 | 261 | 68 | 306 | 9.23e-81 | 246 |
Msa1087650 | AT1G23380.2 | 50.394 | 254 | 104 | 5 | 17 | 261 | 84 | 324 | 2.56e-80 | 245 |
Msa1087650 | AT1G70510.2 | 49.407 | 253 | 110 | 4 | 17 | 261 | 68 | 310 | 2.47e-78 | 239 |
Msa1087650 | AT1G62360.1 | 50.202 | 247 | 107 | 4 | 18 | 258 | 121 | 357 | 5.93e-68 | 215 |
Msa1087650 | AT4G08150.1 | 47.581 | 248 | 116 | 5 | 18 | 258 | 134 | 374 | 1.11e-66 | 213 |
Msa1087650 | AT1G62990.1 | 34.661 | 251 | 142 | 6 | 15 | 244 | 26 | 275 | 1.78e-39 | 139 |
Msa1087650 | AT5G25220.2 | 35.200 | 250 | 132 | 6 | 19 | 244 | 160 | 403 | 2.50e-38 | 139 |
Msa1087650 | AT5G25220.1 | 35.200 | 250 | 132 | 6 | 19 | 244 | 160 | 403 | 2.80e-38 | 139 |
Msa1087650 | AT5G11060.1 | 35.156 | 256 | 124 | 8 | 19 | 244 | 124 | 367 | 1.90e-37 | 136 |
Msa1087650 | AT4G32040.2 | 34.146 | 246 | 140 | 5 | 19 | 244 | 119 | 362 | 9.55e-37 | 134 |
Msa1087650 | AT4G32040.1 | 34.146 | 246 | 140 | 5 | 19 | 244 | 119 | 362 | 1.14e-36 | 134 |
Msa1087650 | AT1G75430.1 | 49.091 | 55 | 28 | 0 | 192 | 246 | 209 | 263 | 5.16e-11 | 62.4 |
Msa1087650 | AT5G02030.1 | 46.667 | 60 | 32 | 0 | 187 | 246 | 350 | 409 | 8.75e-11 | 62.4 |
Find 98 sgRNAs with CRISPR-Local
Find 470 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTCTCTTCTTGAAGAAAT+AGG | 0.173162 | 7_3:-427809 | Msa1087650:CDS |
TCTCACGGAAAGCATTATTT+TGG | 0.227729 | 7_3:+427774 | None:intergenic |
ATTTCTCAAGAAAAGGAAAA+AGG | 0.267954 | 7_3:-422989 | Msa1087650:CDS |
AGGGCATAGGCGTATTGTTC+TGG | 0.295882 | 7_3:+422071 | None:intergenic |
ATGATGATTAGCCTTGGATT+TGG | 0.302616 | 7_3:-421825 | Msa1087650:three_prime_UTR |
CTTCTCTTCTTGAAGAAATA+GGG | 0.308161 | 7_3:-427808 | Msa1087650:CDS |
ACAACCAATCGGATCTAATA+AGG | 0.325364 | 7_3:-428155 | Msa1087650:CDS |
ATATAAAGCAGATAAATAAT+TGG | 0.326164 | 7_3:-422316 | Msa1087650:CDS |
TTTACAGTGGGTCATATTGA+TGG | 0.357534 | 7_3:-428260 | Msa1087650:intron |
TTTACCTGAACGGTTGTAAT+CGG | 0.376328 | 7_3:+427426 | None:intergenic |
TGTTGCTTCATTGAAGGGCT+TGG | 0.378477 | 7_3:+427513 | None:intergenic |
ATCCATGACATTCAAGCAAA+AGG | 0.380616 | 7_3:+422133 | None:intergenic |
GTTTATTCTTATTCTGCTGC+TGG | 0.387145 | 7_3:-428227 | Msa1087650:five_prime_UTR |
AATAATGCTTTCCGTGAGAT+AGG | 0.392343 | 7_3:-427770 | Msa1087650:CDS |
GATAGTAGATTTGGATAAAG+AGG | 0.394577 | 7_3:+428087 | None:intergenic |
TCCTGACCTTGACCACTTCA+TGG | 0.397547 | 7_3:-427741 | Msa1087650:intron |
AAATAATGTTGCTTCATTGA+AGG | 0.405931 | 7_3:+427507 | None:intergenic |
ATTTGTATTACCGTGGGATA+AGG | 0.406677 | 7_3:+422904 | None:intergenic |
AAGTTTCTTGCTAGAGGTGC+AGG | 0.408023 | 7_3:-421855 | Msa1087650:three_prime_UTR |
TCCAAGAAAACCTGGGGAAA+AGG | 0.408702 | 7_3:+428813 | None:intergenic |
TCTGCTGCTGGATTGCATCT+AGG | 0.408994 | 7_3:-428215 | Msa1087650:five_prime_UTR |
GACAGGAATTTCTCAAGAAA+AGG | 0.410633 | 7_3:-422996 | Msa1087650:CDS |
ATTATTAGTTATCTGTTTCG+TGG | 0.419970 | 7_3:-421957 | Msa1087650:three_prime_UTR |
GAAATGCTCCTTCGTAAGTA+CGG | 0.420426 | 7_3:-423039 | Msa1087650:CDS |
AATAATGTTGCTTCATTGAA+GGG | 0.423656 | 7_3:+427508 | None:intergenic |
GGATGCAAGAAAAGCATTGA+TGG | 0.424199 | 7_3:-422953 | Msa1087650:CDS |
GAAAGGAAAGAGTGGAAAGC+TGG | 0.447406 | 7_3:+428741 | None:intergenic |
GGAAAGGTTGAAGCAGTAGA+AGG | 0.448898 | 7_3:-423114 | Msa1087650:CDS |
ATTGGTGGAACGTCCACTAT+AGG | 0.452627 | 7_3:-422930 | Msa1087650:CDS |
TCATCCGATTACAACCGTTC+AGG | 0.455239 | 7_3:-427430 | Msa1087650:intron |
GGGTTAGATCACGAGGCAGC+AGG | 0.462846 | 7_3:-423162 | Msa1087650:intron |
GCTGGGTTGGCTACAGCACC+TGG | 0.465293 | 7_3:+428759 | None:intergenic |
CCTCTGTAAATTTATTCTGC+AGG | 0.471764 | 7_3:-422203 | Msa1087650:exon |
AAATGCTCCTTCGTAAGTAC+GGG | 0.472749 | 7_3:-423038 | Msa1087650:CDS |
TTACAGAGGTCCTGCTATGC+TGG | 0.477108 | 7_3:+422217 | None:intergenic |
ACCATGAAGTGGTCAAGGTC+AGG | 0.484448 | 7_3:+427740 | None:intergenic |
TGGGATAAGGCCACCTATAG+TGG | 0.485346 | 7_3:+422917 | None:intergenic |
TCCATGACATTCAAGCAAAA+GGG | 0.493060 | 7_3:+422134 | None:intergenic |
CTTCTTTCGCAGATTAAGAC+AGG | 0.496624 | 7_3:+422161 | None:intergenic |
ATTCCTGTCTTAAGTTGCTA+AGG | 0.503658 | 7_3:+423010 | None:intergenic |
CAAGAAAAGCATTGATGGAT+TGG | 0.506407 | 7_3:-422948 | Msa1087650:CDS |
AAAGAGGGTGAGTTGCGATC+TGG | 0.510035 | 7_3:+428103 | None:intergenic |
GTAAGTAGCACCAGCATAGC+AGG | 0.513299 | 7_3:-422227 | Msa1087650:CDS |
AGAAGTGGGAAAGGAAAGAG+TGG | 0.525785 | 7_3:+428733 | None:intergenic |
ATATGATATTAGCTAGGCTT+CGG | 0.529086 | 7_3:-422112 | Msa1087650:three_prime_UTR |
TCTAATAAGGTTGGATATGA+CGG | 0.529171 | 7_3:-428142 | Msa1087650:CDS |
AAAGGAAAGAGTGGAAAGCT+GGG | 0.540723 | 7_3:+428742 | None:intergenic |
AGAAGAGAAGCAAGTTCTGT+TGG | 0.544757 | 7_3:+427821 | None:intergenic |
GAAGAAACAAACATAAGAAG+TGG | 0.546211 | 7_3:+428718 | None:intergenic |
ATAGTAGATTTGGATAAAGA+GGG | 0.546531 | 7_3:+428088 | None:intergenic |
CCAATCGGATCTAATAAGGT+TGG | 0.547810 | 7_3:-428151 | Msa1087650:CDS |
TCTTTAAGCTCTTTATCACC+TGG | 0.551142 | 7_3:+423060 | None:intergenic |
ATAGGCGTATTGTTCTGGAT+TGG | 0.551760 | 7_3:+422076 | None:intergenic |
CCAACCTTATTAGATCCGAT+TGG | 0.554336 | 7_3:+428151 | None:intergenic |
GAAAAGCATTGATGGATTGG+TGG | 0.555034 | 7_3:-422945 | Msa1087650:CDS |
TTACCTTAGCAACTTAAGAC+AGG | 0.555596 | 7_3:-423013 | Msa1087650:CDS |
GAAAGAGTGGAAAGCTGGGT+TGG | 0.556200 | 7_3:+428746 | None:intergenic |
AATTTGAAGTTTCTTGCTAG+AGG | 0.556900 | 7_3:-421861 | Msa1087650:three_prime_UTR |
ACAACTAAACGAACTTTGCA+AGG | 0.560050 | 7_3:-427467 | Msa1087650:CDS |
GAAAATCTCATATCTTCAGA+TGG | 0.560173 | 7_3:+422263 | None:intergenic |
AGTGGGTCATATTGATGGCA+AGG | 0.560418 | 7_3:-428255 | Msa1087650:five_prime_UTR |
TCACATGGAACACAACCAAT+CGG | 0.562048 | 7_3:-428166 | Msa1087650:exon |
CTGCAGCTGTCAGATATGAC+TGG | 0.564508 | 7_3:-422344 | Msa1087650:CDS |
TTAAGTTCTCTTTACCTGAA+CGG | 0.565840 | 7_3:+427416 | None:intergenic |
TCAGAGGATGAAATGAGTTG+TGG | 0.568316 | 7_3:-423135 | Msa1087650:CDS |
CTGTAAATTTATTCTGCAGG+TGG | 0.571978 | 7_3:-422200 | Msa1087650:exon |
ACCTGGGGAAAAGGAAAGAG+AGG | 0.574069 | 7_3:+428822 | None:intergenic |
AATATACCATGAAGTGGTCA+AGG | 0.574865 | 7_3:+427735 | None:intergenic |
TAAAAGAATATACCATGAAG+TGG | 0.580028 | 7_3:+427729 | None:intergenic |
ACAGACCTACTCAGTGACAT+AGG | 0.581393 | 7_3:+422026 | None:intergenic |
TCAATCAGAGGAAAAGACAC+TGG | 0.584588 | 7_3:-422289 | Msa1087650:CDS |
AAGAATACTCTCCAAATCCA+AGG | 0.590642 | 7_3:+421814 | None:intergenic |
AAGAAACAAACATAAGAAGT+GGG | 0.593665 | 7_3:+428719 | None:intergenic |
ACAAACATAAGAAGTGGGAA+AGG | 0.594386 | 7_3:+428724 | None:intergenic |
CAGGATCATCTCCTATCTCA+CGG | 0.597806 | 7_3:+427759 | None:intergenic |
TCATGGATATGATATTAGCT+AGG | 0.597845 | 7_3:-422118 | Msa1087650:three_prime_UTR |
CTACTCAGTGACATAGGTGC+CGG | 0.599631 | 7_3:+422032 | None:intergenic |
CTTTGTGGCACATCATGTCC+AGG | 0.602003 | 7_3:-423078 | Msa1087650:CDS |
ATTGGTTGTGTTCCATGTGA+AGG | 0.604142 | 7_3:+428169 | None:intergenic |
GGGGAAAAGGAAAGAGAGGA+AGG | 0.606019 | 7_3:+428826 | None:intergenic |
GGTGGTCATGATGAACTTTG+TGG | 0.607949 | 7_3:-423093 | Msa1087650:CDS |
GGTTAGATCACGAGGCAGCA+GGG | 0.610469 | 7_3:-423161 | Msa1087650:intron |
CTATAGGTGGCCTTATCCCA+CGG | 0.616947 | 7_3:-422914 | Msa1087650:intron |
CAACTAAACGAACTTTGCAA+GGG | 0.626350 | 7_3:-427466 | Msa1087650:CDS |
AACTAAACGAACTTTGCAAG+GGG | 0.629556 | 7_3:-427465 | Msa1087650:CDS |
ATAATTGGTTCATCAATCAG+AGG | 0.632866 | 7_3:-422301 | Msa1087650:CDS |
CGGCACCTATGTCACTGAGT+AGG | 0.637662 | 7_3:-422031 | Msa1087650:three_prime_UTR |
CGAGGCAGCAGGGACATCAG+AGG | 0.640139 | 7_3:-423151 | Msa1087650:CDS |
AGTTCTTCATAGATACAAAG+AGG | 0.649236 | 7_3:-427542 | Msa1087650:CDS |
GGTGGAACGTCCACTATAGG+TGG | 0.655633 | 7_3:-422927 | Msa1087650:CDS |
TAATAATAACTACCTTCACA+TGG | 0.656128 | 7_3:-428181 | Msa1087650:exon |
GCTGCTGGATTGCATCTAGG+AGG | 0.656462 | 7_3:-428212 | Msa1087650:five_prime_UTR |
GGATGAAATGAGTTGTGGAA+AGG | 0.661174 | 7_3:-423130 | Msa1087650:CDS |
AGGCACACACTCTCACAACA+AGG | 0.668052 | 7_3:+428846 | None:intergenic |
AAGGTTGAAGCAGTAGAAGG+TGG | 0.681013 | 7_3:-423111 | Msa1087650:CDS |
AATGCTCCTTCGTAAGTACG+GGG | 0.701629 | 7_3:-423037 | Msa1087650:CDS |
CCTGCAGAATAAATTTACAG+AGG | 0.707916 | 7_3:+422203 | None:intergenic |
ATGCTCCTTCGTAAGTACGG+GGG | 0.733963 | 7_3:-423036 | Msa1087650:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATAATTTATATATTAA+AGG | + | chr7_3:424163-424182 | None:intergenic | 0.0% |
!! | TTAATATATAAATTATATAT+AGG | - | chr7_3:424163-424182 | Msa1087650:intron | 0.0% |
!! | TTTATAATATTATACGAATA+TGG | - | chr7_3:422090-422109 | Msa1087650:three_prime_UTR | 10.0% |
!! | AACATATTATATCATATATA+TGG | + | chr7_3:422208-422227 | None:intergenic | 10.0% |
!! | AAAAAAATATAGTAGAAAAT+TGG | + | chr7_3:423051-423070 | None:intergenic | 10.0% |
!!! | ATAGGTAAATTATAAAATTT+TGG | - | chr7_3:424181-424200 | Msa1087650:intron | 10.0% |
!!! | TTTTTTTTTTAAAAAAAAGC+CGG | + | chr7_3:424842-424861 | None:intergenic | 10.0% |
!! | TATAAAATGAATTTGAATTT+CGG | - | chr7_3:424945-424964 | Msa1087650:intron | 10.0% |
!! | CTATACATTAAATAAAAATT+TGG | - | chr7_3:425608-425627 | Msa1087650:intron | 10.0% |
!!! | AATATTTTTTTTTTGTACAA+TGG | + | chr7_3:426188-426207 | None:intergenic | 10.0% |
!! | TATTAAAAAAAATTATGTTG+TGG | - | chr7_3:427488-427507 | Msa1087650:CDS | 10.0% |
!! | ATATTATATCATATATATGG+TGG | + | chr7_3:422205-422224 | None:intergenic | 15.0% |
!!! | TATAGTTTTATACGTATAAT+TGG | - | chr7_3:422345-422364 | Msa1087650:CDS | 15.0% |
!!! | ATATAGAATAAAAAACCTTT+TGG | + | chr7_3:422687-422706 | None:intergenic | 15.0% |
!! | ATTACATTAATTAAATCAGA+TGG | - | chr7_3:423071-423090 | Msa1087650:CDS | 15.0% |
!!! | AACATTTAATTTATTACACT+TGG | - | chr7_3:423147-423166 | Msa1087650:CDS | 15.0% |
!! | AAAAATATCCAGATATTTAA+AGG | + | chr7_3:423358-423377 | None:intergenic | 15.0% |
!! | AAATTAACAAAAAATACACA+AGG | - | chr7_3:423714-423733 | Msa1087650:intron | 15.0% |
!! | AACATAAATATAAATCGTTT+AGG | - | chr7_3:424292-424311 | Msa1087650:intron | 15.0% |
!! | ATTAAAATCCATATTATTGT+CGG | + | chr7_3:424920-424939 | None:intergenic | 15.0% |
!!! | TTTAAATGTTCTTTTTGTAT+AGG | + | chr7_3:425469-425488 | None:intergenic | 15.0% |
!!! | ACGTGAAAATTTTAAAATTT+AGG | + | chr7_3:426795-426814 | None:intergenic | 15.0% |
!! | TTCATGTCAATATATTAAAA+TGG | + | chr7_3:427277-427296 | None:intergenic | 15.0% |
!! | TTGATTATATATCTGATAAA+AGG | - | chr7_3:428128-428147 | Msa1087650:CDS | 15.0% |
!!! | TATAATTTGATGAATTTTTC+AGG | - | chr7_3:428355-428374 | Msa1087650:intron | 15.0% |
!! | ATATAAAGCAGATAAATAAT+TGG | - | chr7_3:428417-428436 | Msa1087650:intron | 15.0% |
!!! | ATATTTTTCACTCAATCATA+TGG | - | chr7_3:422723-422742 | Msa1087650:intron | 20.0% |
!! | ATTAATTAAATCAGATGGAA+TGG | - | chr7_3:423076-423095 | Msa1087650:CDS | 20.0% |
!! | TATTATCGTACATAATTAGA+GGG | + | chr7_3:423494-423513 | None:intergenic | 20.0% |
!! | TTATTATCGTACATAATTAG+AGG | + | chr7_3:423495-423514 | None:intergenic | 20.0% |
!! | CTAATTATGTACGATAATAA+TGG | - | chr7_3:423495-423514 | Msa1087650:intron | 20.0% |
!!! | GTTTTACACAATAACATATA+TGG | - | chr7_3:423899-423918 | Msa1087650:intron | 20.0% |
!! | ATAAAGCCAAAAAACATTTA+GGG | + | chr7_3:424502-424521 | None:intergenic | 20.0% |
!!! | TTTTTTGGCTTTATGTTATT+TGG | - | chr7_3:424508-424527 | Msa1087650:intron | 20.0% |
!!! | TGTTATTTGGATTATTTGTA+AGG | - | chr7_3:424521-424540 | Msa1087650:intron | 20.0% |
!!! | TTTCTTTGTCAAACTTTTTT+CGG | - | chr7_3:424764-424783 | Msa1087650:intron | 20.0% |
!!! | GTTAAACAAATTTTTGCTAT+GGG | + | chr7_3:424976-424995 | None:intergenic | 20.0% |
!!! | TGTTAAACAAATTTTTGCTA+TGG | + | chr7_3:424977-424996 | None:intergenic | 20.0% |
!! | ATATTTGCATTCATCTAATA+TGG | - | chr7_3:425062-425081 | Msa1087650:intron | 20.0% |
!!! | TGTTTTTCAATGAAGATTAT+TGG | - | chr7_3:425107-425126 | Msa1087650:intron | 20.0% |
!!! | AAATTCAAGTTTAGTTTAGT+TGG | - | chr7_3:425414-425433 | Msa1087650:intron | 20.0% |
!!! | AATTCAAGTTTAGTTTAGTT+GGG | - | chr7_3:425415-425434 | Msa1087650:intron | 20.0% |
!! | TCCAATATAAAAACTTAACT+TGG | - | chr7_3:425697-425716 | Msa1087650:intron | 20.0% |
!!! | GGTTTTAATATCAAATTGAT+TGG | - | chr7_3:425926-425945 | Msa1087650:intron | 20.0% |
!! | ATTGAATTTCTATAAAACAG+TGG | - | chr7_3:427004-427023 | Msa1087650:intron | 20.0% |
!! | TCTCACTAATAATAAAATGT+TGG | - | chr7_3:427242-427261 | Msa1087650:intron | 20.0% |
!! | ACTAATAATAAAATGTTGGA+GGG | - | chr7_3:427246-427265 | Msa1087650:intron | 20.0% |
!!! | TTGTACTAATTAAGTTGATA+TGG | - | chr7_3:427437-427456 | Msa1087650:CDS | 20.0% |
!!! | ATTTCATTTTGTCCTTTTTT+TGG | - | chr7_3:427550-427569 | Msa1087650:CDS | 20.0% |
!!! | TTTCATTTTGTCCTTTTTTT+GGG | - | chr7_3:427551-427570 | Msa1087650:CDS | 20.0% |
!! | TCATCAAATTATAATCTATC+AGG | + | chr7_3:428348-428367 | None:intergenic | 20.0% |
!!! | AGATATGAGATTTTCTATTA+TGG | - | chr7_3:428478-428497 | Msa1087650:intron | 20.0% |
! | GGAAAAGAAAAGCAAAAATA+AGG | - | chr7_3:421940-421959 | Msa1087650:three_prime_UTR | 25.0% |
! | AAGAAACAAACATAAGAAGT+GGG | + | chr7_3:422017-422036 | None:intergenic | 25.0% |
! | GTATAAAACTATAGTACTAC+TGG | + | chr7_3:422338-422357 | None:intergenic | 25.0% |
! | TAATAATAACTACCTTCACA+TGG | - | chr7_3:422552-422571 | Msa1087650:intron | 25.0% |
! | ATAGTAGATTTGGATAAAGA+GGG | + | chr7_3:422648-422667 | None:intergenic | 25.0% |
! | AAAAAAGCAGATAGTAGATT+TGG | + | chr7_3:422658-422677 | None:intergenic | 25.0% |
! | ATACTATATATTGTGCATGA+AGG | - | chr7_3:422881-422900 | Msa1087650:intron | 25.0% |
! | TAAAAGAATATACCATGAAG+TGG | + | chr7_3:423007-423026 | None:intergenic | 25.0% |
! | ATATAGTAGAAAATTGGACT+TGG | + | chr7_3:423045-423064 | None:intergenic | 25.0% |
!! | ATTTATTACACTTGGTGATT+AGG | - | chr7_3:423155-423174 | Msa1087650:CDS | 25.0% |
!! | AATAATGTTGCTTCATTGAA+GGG | + | chr7_3:423228-423247 | None:intergenic | 25.0% |
!! | AAATAATGTTGCTTCATTGA+AGG | + | chr7_3:423229-423248 | None:intergenic | 25.0% |
! | TCATAATGCCTTTAAATATC+TGG | - | chr7_3:423347-423366 | Msa1087650:intron | 25.0% |
! | TCGTGTTACAAAAAAGAAAA+GGG | + | chr7_3:423467-423486 | None:intergenic | 25.0% |
! | TTCGTGTTACAAAAAAGAAA+AGG | + | chr7_3:423468-423487 | None:intergenic | 25.0% |
!!! | TTTCTTTTTTGTAACACGAA+TGG | - | chr7_3:423468-423487 | Msa1087650:intron | 25.0% |
! | ATTAATTACATCCACAATTG+AGG | - | chr7_3:423975-423994 | Msa1087650:intron | 25.0% |
! | CTGCAATTAGAATAATGATA+TGG | - | chr7_3:424000-424019 | Msa1087650:intron | 25.0% |
!!! | TTAGGGATTTTTTTTGCATA+AGG | - | chr7_3:424467-424486 | Msa1087650:intron | 25.0% |
! | CATAAAGCCAAAAAACATTT+AGG | + | chr7_3:424503-424522 | None:intergenic | 25.0% |
! | TTTAATATATCGTTTCCTTC+CGG | - | chr7_3:424820-424839 | Msa1087650:intron | 25.0% |
!!! | TTTTTTAAAAAAAAGCCGGA+AGG | + | chr7_3:424838-424857 | None:intergenic | 25.0% |
! | AGATGAATGCAAATATACAA+TGG | + | chr7_3:425058-425077 | None:intergenic | 25.0% |
!!! | CAGTATTTTTGTGAAAATTC+GGG | + | chr7_3:425271-425290 | None:intergenic | 25.0% |
!!! | GCAGTATTTTTGTGAAAATT+CGG | + | chr7_3:425272-425291 | None:intergenic | 25.0% |
! | TTACCAAAGAAATTGAATGT+GGG | + | chr7_3:425396-425415 | None:intergenic | 25.0% |
! | TTTACCAAAGAAATTGAATG+TGG | + | chr7_3:425397-425416 | None:intergenic | 25.0% |
!! | GCCAAGTTAAGTTTTTATAT+TGG | + | chr7_3:425701-425720 | None:intergenic | 25.0% |
! | TGATCAAATCACAAAACTAA+AGG | - | chr7_3:425950-425969 | Msa1087650:intron | 25.0% |
! | GATCAAATCACAAAACTAAA+GGG | - | chr7_3:425951-425970 | Msa1087650:intron | 25.0% |
! | TATGGTCTACAATTAAAACT+TGG | + | chr7_3:426096-426115 | None:intergenic | 25.0% |
!!! | TTTTTTTTGTACAATGGAGA+CGG | + | chr7_3:426182-426201 | None:intergenic | 25.0% |
!! | ATTTTTGTATATCATCACAG+TGG | - | chr7_3:426205-426224 | Msa1087650:intron | 25.0% |
! | ATTTAATTCAGATACTTCGT+GGG | + | chr7_3:426486-426505 | None:intergenic | 25.0% |
! | TATTTAATTCAGATACTTCG+TGG | + | chr7_3:426487-426506 | None:intergenic | 25.0% |
!! | GAAGTATCTTATAAGTATCT+TGG | + | chr7_3:426565-426584 | None:intergenic | 25.0% |
! | ACATATCCTAGAAAAAATGA+AGG | - | chr7_3:426591-426610 | Msa1087650:intron | 25.0% |
! | CATATCCTAGAAAAAATGAA+GGG | - | chr7_3:426592-426611 | Msa1087650:intron | 25.0% |
!!! | TTTTACCCTTCATTTTTTCT+AGG | + | chr7_3:426600-426619 | None:intergenic | 25.0% |
!! | TAATCAATGCTTATTTCTTC+AGG | - | chr7_3:426706-426725 | Msa1087650:intron | 25.0% |
! | ACAACACATAAAATTTACCT+TGG | + | chr7_3:427125-427144 | None:intergenic | 25.0% |
! | GTACGTGAAATAAAATGATT+GGG | + | chr7_3:427194-427213 | None:intergenic | 25.0% |
! | CACTAATAATAAAATGTTGG+AGG | - | chr7_3:427245-427264 | Msa1087650:intron | 25.0% |
! | CTAATAATAAAATGTTGGAG+GGG | - | chr7_3:427247-427266 | Msa1087650:intron | 25.0% |
! | TAATAATAAAATGTTGGAGG+GGG | - | chr7_3:427248-427267 | Msa1087650:intron | 25.0% |
!! | ATTGAAGCTATAGAAAGTAT+AGG | - | chr7_3:427299-427318 | Msa1087650:intron | 25.0% |
!! | TTGAAGCTATAGAAAGTATA+GGG | - | chr7_3:427300-427319 | Msa1087650:intron | 25.0% |
! | ATTTCTCAAGAAAAGGAAAA+AGG | - | chr7_3:427744-427763 | Msa1087650:CDS | 25.0% |
! | TTTCTCAAGAAAAGGAAAAA+GGG | - | chr7_3:427745-427764 | Msa1087650:CDS | 25.0% |
!! | TGTTTGTACTAGAAAACTTT+TGG | - | chr7_3:428183-428202 | Msa1087650:exon | 25.0% |
!!! | AATTTGATGAATTTTTCAGG+AGG | - | chr7_3:428358-428377 | Msa1087650:intron | 25.0% |
!! | TATGAGATTTTCTATTATGG+AGG | - | chr7_3:428481-428500 | Msa1087650:intron | 25.0% |
!! | ATGAGATTTTCTATTATGGA+GGG | - | chr7_3:428482-428501 | Msa1087650:intron | 25.0% |
! | ATTATTAGTTATCTGTTTCG+TGG | - | chr7_3:428776-428795 | Msa1087650:five_prime_UTR | 25.0% |
! | TTTCTTTTCCAAGAAAACCT+GGG | + | chr7_3:421930-421949 | None:intergenic | 30.0% |
! | TTTTCTTTTCCAAGAAAACC+TGG | + | chr7_3:421931-421950 | None:intergenic | 30.0% |
AGAAAAGCAAAAATAAGGTC+TGG | - | chr7_3:421945-421964 | Msa1087650:three_prime_UTR | 30.0% | |
GAAGAAACAAACATAAGAAG+TGG | + | chr7_3:422018-422037 | None:intergenic | 30.0% | |
! | TATGGATTATATTCTCCACT+AGG | - | chr7_3:422108-422127 | Msa1087650:three_prime_UTR | 30.0% |
!!! | AGGTTTTTTATTTCACCTAG+TGG | + | chr7_3:422126-422145 | None:intergenic | 30.0% |
GGTGAAATAAAAAACCTACA+CGG | - | chr7_3:422129-422148 | Msa1087650:three_prime_UTR | 30.0% | |
GTGAAATAAAAAACCTACAC+GGG | - | chr7_3:422130-422149 | Msa1087650:three_prime_UTR | 30.0% | |
CAAGTGAGTTTAGATATACA+TGG | - | chr7_3:422422-422441 | Msa1087650:intron | 30.0% | |
TCTAATAAGGTTGGATATGA+CGG | - | chr7_3:422591-422610 | Msa1087650:intron | 30.0% | |
GATAGTAGATTTGGATAAAG+AGG | + | chr7_3:422649-422668 | None:intergenic | 30.0% | |
!!! | TGCTTTTTTAGAATGCCAAA+AGG | - | chr7_3:422669-422688 | Msa1087650:intron | 30.0% |
TATATATTGTGCATGAAGGT+TGG | - | chr7_3:422885-422904 | Msa1087650:intron | 30.0% | |
ATATATTGTGCATGAAGGTT+GGG | - | chr7_3:422886-422905 | Msa1087650:intron | 30.0% | |
CTTCTCTTCTTGAAGAAATA+GGG | - | chr7_3:422925-422944 | Msa1087650:CDS | 30.0% | |
AGTTCTTCATAGATACAAAG+AGG | - | chr7_3:423191-423210 | Msa1087650:intron | 30.0% | |
TTAAGTTCTCTTTACCTGAA+CGG | + | chr7_3:423320-423339 | None:intergenic | 30.0% | |
TCAGGTAAAGAGAACTTAAT+TGG | - | chr7_3:423321-423340 | Msa1087650:intron | 30.0% | |
! | ATCTATACTCGTGTTCTTTT+TGG | + | chr7_3:423786-423805 | None:intergenic | 30.0% |
! | TACTTGCTGACAAAGTTATA+GGG | + | chr7_3:424110-424129 | None:intergenic | 30.0% |
! | ATACTTGCTGACAAAGTTAT+AGG | + | chr7_3:424111-424130 | None:intergenic | 30.0% |
!!! | GTGCCTAAATGATTTTGATT+TGG | - | chr7_3:424408-424427 | Msa1087650:intron | 30.0% |
ACGCCAAATCAAAATCATTT+AGG | + | chr7_3:424414-424433 | None:intergenic | 30.0% | |
! | TTTCTCACTAGTACTAGTTT+AGG | - | chr7_3:424449-424468 | Msa1087650:intron | 30.0% |
! | TTCTCACTAGTACTAGTTTA+GGG | - | chr7_3:424450-424469 | Msa1087650:intron | 30.0% |
!!! | AAAGCTCCCTAAATGTTTTT+TGG | - | chr7_3:424493-424512 | Msa1087650:intron | 30.0% |
TAAAACTTCAGTTCTATTGG+TGG | - | chr7_3:424603-424622 | Msa1087650:intron | 30.0% | |
TCGACTTTGACTATCAATTA+TGG | - | chr7_3:424654-424673 | Msa1087650:intron | 30.0% | |
ACTTTGACTATCAATTATGG+AGG | - | chr7_3:424657-424676 | Msa1087650:intron | 30.0% | |
! | TTTGTTGTCCGACAATAATA+TGG | - | chr7_3:424909-424928 | Msa1087650:intron | 30.0% |
! | ACAATGGTACTCATAGATTT+TGG | + | chr7_3:425042-425061 | None:intergenic | 30.0% |
ACACACTAATATATAGGCAA+CGG | - | chr7_3:425207-425226 | Msa1087650:intron | 30.0% | |
!! | TTTTTGTGAAAATTCGGGTT+GGG | + | chr7_3:425266-425285 | None:intergenic | 30.0% |
! | ATTTTTGTGAAAATTCGGGT+TGG | + | chr7_3:425267-425286 | None:intergenic | 30.0% |
! | AGTTTAGTTTAGTTGGGTTT+CGG | - | chr7_3:425421-425440 | Msa1087650:intron | 30.0% |
! | GTATAGGTTTGCTTTGAATT+TGG | + | chr7_3:425453-425472 | None:intergenic | 30.0% |
AATGTATAGCTCTTCAATGA+AGG | + | chr7_3:425597-425616 | None:intergenic | 30.0% | |
TTGACTCATTCTTACATGAA+CGG | + | chr7_3:425676-425695 | None:intergenic | 30.0% | |
CAATCCAATCTCAAATACAT+GGG | - | chr7_3:425899-425918 | Msa1087650:intron | 30.0% | |
! | AATTCCCATGTATTTGAGAT+TGG | + | chr7_3:425906-425925 | None:intergenic | 30.0% |
AATCTCAAATACATGGGAAT+TGG | - | chr7_3:425905-425924 | Msa1087650:intron | 30.0% | |
! | TTTACATGTGAGTTTTCCAA+TGG | - | chr7_3:426318-426337 | Msa1087650:intron | 30.0% |
!! | TGAAGTATTGGTATCTGATA+CGG | + | chr7_3:426399-426418 | None:intergenic | 30.0% |
TATCAGATACCAATACTTCA+CGG | - | chr7_3:426399-426418 | Msa1087650:intron | 30.0% | |
! | TAAGTATCTTGGTGTATATG+TGG | + | chr7_3:426554-426573 | None:intergenic | 30.0% |
GACAATGATGTGAAATTCAA+TGG | - | chr7_3:426626-426645 | Msa1087650:intron | 30.0% | |
TTCTATAAAACAGTGGTTTC+TGG | - | chr7_3:427011-427030 | Msa1087650:intron | 30.0% | |
! | GTAATGAAATGGGAATGTTT+TGG | - | chr7_3:427047-427066 | Msa1087650:intron | 30.0% |
CTATTATATAGTTGCATGCA+TGG | - | chr7_3:427070-427089 | Msa1087650:intron | 30.0% | |
GGAATATACTTGAAATTCCA+AGG | - | chr7_3:427105-427124 | Msa1087650:intron | 30.0% | |
CGTACGTGAAATAAAATGAT+TGG | + | chr7_3:427195-427214 | None:intergenic | 30.0% | |
TGAAAGCGAAAGTTAATTGT+TGG | - | chr7_3:427215-427234 | Msa1087650:intron | 30.0% | |
AATAATAAAATGTTGGAGGG+GGG | - | chr7_3:427249-427268 | Msa1087650:intron | 30.0% | |
CTCATTCGGCATATAATAAT+TGG | - | chr7_3:427327-427346 | Msa1087650:intron | 30.0% | |
! | TTTTGTTGAATGTGTGTACA+TGG | + | chr7_3:427402-427421 | None:intergenic | 30.0% |
ATTGGAATTTGTATTACCGT+GGG | + | chr7_3:427838-427857 | None:intergenic | 30.0% | |
AATTGGAATTTGTATTACCG+TGG | + | chr7_3:427839-427858 | None:intergenic | 30.0% | |
GCATGTTGTGTGATATTAAT+TGG | + | chr7_3:427856-427875 | None:intergenic | 30.0% | |
! | ATCCTGACTGGAATAATTTT+TGG | - | chr7_3:427985-428004 | Msa1087650:intron | 30.0% |
! | ATAATTGGTTCATCAATCAG+AGG | - | chr7_3:428432-428451 | Msa1087650:intron | 30.0% |
GAAAATCTCATATCTTCAGA+TGG | + | chr7_3:428473-428492 | None:intergenic | 30.0% | |
TCATGGATATGATATTAGCT+AGG | - | chr7_3:428615-428634 | Msa1087650:intron | 30.0% | |
ATATGATATTAGCTAGGCTT+CGG | - | chr7_3:428621-428640 | Msa1087650:intron | 30.0% | |
GAAAAATTAACATAGGGCAT+AGG | + | chr7_3:428678-428697 | None:intergenic | 30.0% | |
CGGTTCGAAAAATTAACATA+GGG | + | chr7_3:428684-428703 | None:intergenic | 30.0% | |
!! | CCTATGTTAATTTTTCGAAC+CGG | - | chr7_3:428682-428701 | Msa1087650:intron | 30.0% |
! | AATTTGAAGTTTCTTGCTAG+AGG | - | chr7_3:428872-428891 | Msa1087650:five_prime_UTR | 30.0% |
!!! | TTTTAGATGATGATTAGCCT+TGG | - | chr7_3:428902-428921 | Msa1087650:five_prime_UTR | 30.0% |
! | TTCTTTTCCAAGAAAACCTG+GGG | + | chr7_3:421929-421948 | None:intergenic | 35.0% |
ACAAACATAAGAAGTGGGAA+AGG | + | chr7_3:422012-422031 | None:intergenic | 35.0% | |
CAGTCAAACAAAAGGAGATT+AGG | + | chr7_3:422311-422330 | None:intergenic | 35.0% | |
TTGACTCAATGTTAACTGAC+AGG | + | chr7_3:422405-422424 | None:intergenic | 35.0% | |
GTAAAAGGACATTCAACTTG+TGG | + | chr7_3:422458-422477 | None:intergenic | 35.0% | |
! | AGTTGAATGTCCTTTTACAG+TGG | - | chr7_3:422460-422479 | Msa1087650:intron | 35.0% |
! | GTTGAATGTCCTTTTACAGT+GGG | - | chr7_3:422461-422480 | Msa1087650:intron | 35.0% |
TCAATATGACCCACTGTAAA+AGG | + | chr7_3:422473-422492 | None:intergenic | 35.0% | |
TTTACAGTGGGTCATATTGA+TGG | - | chr7_3:422473-422492 | Msa1087650:intron | 35.0% | |
GTTTATTCTTATTCTGCTGC+TGG | - | chr7_3:422506-422525 | Msa1087650:intron | 35.0% | |
ACAACCAATCGGATCTAATA+AGG | - | chr7_3:422578-422597 | Msa1087650:intron | 35.0% | |
TATATTGTGCATGAAGGTTG+GGG | - | chr7_3:422887-422906 | Msa1087650:intron | 35.0% | |
GCTTCTCTTCTTGAAGAAAT+AGG | - | chr7_3:422924-422943 | Msa1087650:CDS | 35.0% | |
!!! | TCTCACGGAAAGCATTATTT+TGG | + | chr7_3:422962-422981 | None:intergenic | 35.0% |
AATAATGCTTTCCGTGAGAT+AGG | - | chr7_3:422963-422982 | Msa1087650:CDS | 35.0% | |
AATATACCATGAAGTGGTCA+AGG | + | chr7_3:423001-423020 | None:intergenic | 35.0% | |
ACAACTAAACGAACTTTGCA+AGG | - | chr7_3:423266-423285 | Msa1087650:intron | 35.0% | |
CAACTAAACGAACTTTGCAA+GGG | - | chr7_3:423267-423286 | Msa1087650:intron | 35.0% | |
AACTAAACGAACTTTGCAAG+GGG | - | chr7_3:423268-423287 | Msa1087650:intron | 35.0% | |
TTTACCTGAACGGTTGTAAT+CGG | + | chr7_3:423310-423329 | None:intergenic | 35.0% | |
AGTAGCAAATCTTTCCATTG+AGG | - | chr7_3:423577-423596 | Msa1087650:intron | 35.0% | |
TCCTTCGAATTTAAATGCCT+TGG | - | chr7_3:423659-423678 | Msa1087650:intron | 35.0% | |
CCTTCGAATTTAAATGCCTT+GGG | - | chr7_3:423660-423679 | Msa1087650:intron | 35.0% | |
!! | AATCCTACTTTAGAGTCACT+TGG | + | chr7_3:423823-423842 | None:intergenic | 35.0% |
! | ACTTGCTGACAAAGTTATAG+GGG | + | chr7_3:424109-424128 | None:intergenic | 35.0% |
! | TTTTGGTACCCCTGAAAATA+TGG | - | chr7_3:424198-424217 | Msa1087650:intron | 35.0% |
AAGTGTATCTCATTTAGCTG+TGG | + | chr7_3:424261-424280 | None:intergenic | 35.0% | |
TTTAGGCTCACACACATAAA+AGG | - | chr7_3:424309-424328 | Msa1087650:intron | 35.0% | |
TTAGGCTCACACACATAAAA+GGG | - | chr7_3:424310-424329 | Msa1087650:intron | 35.0% | |
! | GGGAAAAGTATGAAATAGCA+AGG | - | chr7_3:424330-424349 | Msa1087650:intron | 35.0% |
! | CGTAACAACGTATTTTCTAG+AGG | - | chr7_3:424546-424565 | Msa1087650:intron | 35.0% |
!! | ACAACGTATTTTCTAGAGGA+AGG | - | chr7_3:424550-424569 | Msa1087650:intron | 35.0% |
ACTTACATGCTCTTTGTGAA+AGG | - | chr7_3:424579-424598 | Msa1087650:intron | 35.0% | |
CTTACATGCTCTTTGTGAAA+GGG | - | chr7_3:424580-424599 | Msa1087650:intron | 35.0% | |
GGGTAAAACTTCAGTTCTAT+TGG | - | chr7_3:424600-424619 | Msa1087650:intron | 35.0% | |
CTGTCTCGTAAACAGAAAAT+AGG | + | chr7_3:424689-424708 | None:intergenic | 35.0% | |
CTACACAGTATCTGAAAGAA+AGG | + | chr7_3:424737-424756 | None:intergenic | 35.0% | |
TCAGCCACACACTAATATAT+AGG | - | chr7_3:425201-425220 | Msa1087650:intron | 35.0% | |
GTTGCCTATATATTAGTGTG+TGG | + | chr7_3:425208-425227 | None:intergenic | 35.0% | |
CACACTAATATATAGGCAAC+GGG | - | chr7_3:425208-425227 | Msa1087650:intron | 35.0% | |
ACACTAATATATAGGCAACG+GGG | - | chr7_3:425209-425228 | Msa1087650:intron | 35.0% | |
!!! | TTTTGTGAAAATTCGGGTTG+GGG | + | chr7_3:425265-425284 | None:intergenic | 35.0% |
AAGAAATTGAATGTGGGTCT+CGG | + | chr7_3:425390-425409 | None:intergenic | 35.0% | |
AGACCCACATTCAATTTCTT+TGG | - | chr7_3:425390-425409 | Msa1087650:intron | 35.0% | |
! | GTTTAGTTTAGTTGGGTTTC+GGG | - | chr7_3:425422-425441 | Msa1087650:intron | 35.0% |
! | TTTAGTTTAGTTGGGTTTCG+GGG | - | chr7_3:425423-425442 | Msa1087650:intron | 35.0% |
! | GAAGGTTGACTTAATTGACA+AGG | + | chr7_3:425579-425598 | None:intergenic | 35.0% |
TGACTCATTCTTACATGAAC+GGG | + | chr7_3:425675-425694 | None:intergenic | 35.0% | |
! | ATAGTGGAGTTTCCCTTAAA+CGG | - | chr7_3:425727-425746 | Msa1087650:intron | 35.0% |
! | CCATGTATTTGAGATTGGAT+TGG | + | chr7_3:425901-425920 | None:intergenic | 35.0% |
CCAATCCAATCTCAAATACA+TGG | - | chr7_3:425898-425917 | Msa1087650:intron | 35.0% | |
!! | CCTAAGAGTACTTATGGAAT+GGG | + | chr7_3:426015-426034 | None:intergenic | 35.0% |
CCATTCCATAAGTACTCTTA+GGG | - | chr7_3:426013-426032 | Msa1087650:intron | 35.0% | |
AGTACTATGTATGAGATCCT+GGG | - | chr7_3:426150-426169 | Msa1087650:intron | 35.0% | |
GATGCATACACATAACACTA+GGG | + | chr7_3:426231-426250 | None:intergenic | 35.0% | |
TGATGCATACACATAACACT+AGG | + | chr7_3:426232-426251 | None:intergenic | 35.0% | |
GTCAGTTGAGTTAAGACTTA+TGG | + | chr7_3:426291-426310 | None:intergenic | 35.0% | |
GAAGAAACAACATTAGCCAT+TGG | + | chr7_3:426337-426356 | None:intergenic | 35.0% | |
!! | GAAGTATTGGTATCTGATAC+GGG | + | chr7_3:426398-426417 | None:intergenic | 35.0% |
GAAAAGAGTAATTCACTGCT+AGG | + | chr7_3:426940-426959 | None:intergenic | 35.0% | |
! | TTTTCTTCCTTTCCATGACA+AGG | - | chr7_3:426955-426974 | Msa1087650:intron | 35.0% |
TCCCTACTCAAGTAATGAAA+TGG | - | chr7_3:427036-427055 | Msa1087650:intron | 35.0% | |
CCCATTTCATTACTTGAGTA+GGG | + | chr7_3:427040-427059 | None:intergenic | 35.0% | |
CCCTACTCAAGTAATGAAAT+GGG | - | chr7_3:427037-427056 | Msa1087650:intron | 35.0% | |
TCCCATTTCATTACTTGAGT+AGG | + | chr7_3:427041-427060 | None:intergenic | 35.0% | |
ATAATAAAATGTTGGAGGGG+GGG | - | chr7_3:427250-427269 | Msa1087650:intron | 35.0% | |
TCGTGATCTAACCCAAAAAA+AGG | + | chr7_3:427565-427584 | None:intergenic | 35.0% | |
!!! | TTTTTTTGGGTTAGATCACG+AGG | - | chr7_3:427564-427583 | Msa1087650:intron | 35.0% |
TCTTTAAGCTCTTTATCACC+TGG | + | chr7_3:427676-427695 | None:intergenic | 35.0% | |
TTACCTTAGCAACTTAAGAC+AGG | - | chr7_3:427720-427739 | Msa1087650:intron | 35.0% | |
! | ATTCCTGTCTTAAGTTGCTA+AGG | + | chr7_3:427726-427745 | None:intergenic | 35.0% |
GACAGGAATTTCTCAAGAAA+AGG | - | chr7_3:427737-427756 | Msa1087650:intron | 35.0% | |
GAAAAAGGGTAAACTACCAA+AGG | - | chr7_3:427759-427778 | Msa1087650:CDS | 35.0% | |
! | AATGCTTTTCTTGCATCCTT+TGG | + | chr7_3:427778-427797 | None:intergenic | 35.0% |
!! | CAAGAAAAGCATTGATGGAT+TGG | - | chr7_3:427785-427804 | Msa1087650:CDS | 35.0% |
ATTTGTATTACCGTGGGATA+AGG | + | chr7_3:427832-427851 | None:intergenic | 35.0% | |
AATTTCCTCGAATCATTCGT+TGG | + | chr7_3:427956-427975 | None:intergenic | 35.0% | |
! | ATTTGAGTTCAAATCCTGAC+TGG | - | chr7_3:427973-427992 | Msa1087650:intron | 35.0% |
GACCAAAAATTATTCCAGTC+AGG | + | chr7_3:427990-428009 | None:intergenic | 35.0% | |
TTTAACTCTCAACTGAACTC+CGG | - | chr7_3:428018-428037 | Msa1087650:intron | 35.0% | |
TCCTTCATTTGGAAACAGAA+GGG | - | chr7_3:428053-428072 | Msa1087650:intron | 35.0% | |
! | TAACACCAACAAAATGGACT+AGG | + | chr7_3:428156-428175 | None:intergenic | 35.0% |
ACACTGTAACACCAACAAAA+TGG | + | chr7_3:428162-428181 | None:intergenic | 35.0% | |
! | GTACTAGAAAACTTTTGGCA+TGG | - | chr7_3:428188-428207 | Msa1087650:five_prime_UTR | 35.0% |
CAAATGCAAGTTAAGCTTGT+TGG | + | chr7_3:428233-428252 | None:intergenic | 35.0% | |
!! | GCTTAACTTGCATTTGCAAA+AGG | - | chr7_3:428237-428256 | Msa1087650:five_prime_UTR | 35.0% |
TGGAATTGACGTTGTTATCT+TGG | + | chr7_3:428275-428294 | None:intergenic | 35.0% | |
AGCAAAGAAGCTTGACAAAA+TGG | + | chr7_3:428295-428314 | None:intergenic | 35.0% | |
!!! | TTGATGAATTTTTCAGGAGG+AGG | - | chr7_3:428361-428380 | Msa1087650:intron | 35.0% |
CCTGCAGAATAAATTTACAG+AGG | + | chr7_3:428533-428552 | None:intergenic | 35.0% | |
CCTCTGTAAATTTATTCTGC+AGG | - | chr7_3:428530-428549 | Msa1087650:intron | 35.0% | |
CTGTAAATTTATTCTGCAGG+TGG | - | chr7_3:428533-428552 | Msa1087650:intron | 35.0% | |
TCCATGACATTCAAGCAAAA+GGG | + | chr7_3:428602-428621 | None:intergenic | 35.0% | |
ATCCATGACATTCAAGCAAA+AGG | + | chr7_3:428603-428622 | None:intergenic | 35.0% | |
! | CCGGTTCGAAAAATTAACAT+AGG | + | chr7_3:428685-428704 | None:intergenic | 35.0% |
!! | ATGATGATTAGCCTTGGATT+TGG | - | chr7_3:428908-428927 | Msa1087650:five_prime_UTR | 35.0% |
!! | AATAAGGTCTGGTCTTTTCC+AGG | - | chr7_3:421956-421975 | Msa1087650:three_prime_UTR | 40.0% |
AAAGGAAAGAGTGGAAAGCT+GGG | + | chr7_3:421994-422013 | None:intergenic | 40.0% | |
CTGGTAAGCAGTCAAACAAA+AGG | + | chr7_3:422319-422338 | None:intergenic | 40.0% | |
ATTGGTTGTGTTCCATGTGA+AGG | + | chr7_3:422567-422586 | None:intergenic | 40.0% | |
TCACATGGAACACAACCAAT+CGG | - | chr7_3:422567-422586 | Msa1087650:intron | 40.0% | |
CCAACCTTATTAGATCCGAT+TGG | + | chr7_3:422585-422604 | None:intergenic | 40.0% | |
CCAATCGGATCTAATAAGGT+TGG | - | chr7_3:422582-422601 | Msa1087650:intron | 40.0% | |
AGAAGAGAAGCAAGTTCTGT+TGG | + | chr7_3:422915-422934 | None:intergenic | 40.0% | |
!!! | CACGGAAAGCATTATTTTGG+TGG | + | chr7_3:422959-422978 | None:intergenic | 40.0% |
GAAAAAGTCCTGAACATGAG+TGG | - | chr7_3:423441-423460 | Msa1087650:intron | 40.0% | |
GTTCTTTAACTGCTAGTAGC+AGG | - | chr7_3:423539-423558 | Msa1087650:intron | 40.0% | |
TGCTAACTTAAGAGGACAGA+TGG | + | chr7_3:423615-423634 | None:intergenic | 40.0% | |
ACTAGCAGTGCTAACTTAAG+AGG | + | chr7_3:423623-423642 | None:intergenic | 40.0% | |
TGCTAGTAATGAGATCAAGC+TGG | - | chr7_3:423636-423655 | Msa1087650:intron | 40.0% | |
! | CCCAAGGCATTTAAATTCGA+AGG | + | chr7_3:423663-423682 | None:intergenic | 40.0% |
!! | GAACCAAGTGACTCTAAAGT+AGG | - | chr7_3:423817-423836 | Msa1087650:intron | 40.0% |
CTTGATCCAAAGTCTACACT+CGG | - | chr7_3:423843-423862 | Msa1087650:intron | 40.0% | |
TAATTGCAGTGCCTCAATTG+TGG | + | chr7_3:423989-424008 | None:intergenic | 40.0% | |
!! | ACGTATTTTCTAGAGGAAGG+AGG | - | chr7_3:424553-424572 | Msa1087650:intron | 40.0% |
TATATTAGTGTGTGGCTGAG+TGG | + | chr7_3:425200-425219 | None:intergenic | 40.0% | |
TAATATATAGGCAACGGGGT+GGG | - | chr7_3:425213-425232 | Msa1087650:intron | 40.0% | |
!! | TTTGTGAAAATTCGGGTTGG+GGG | + | chr7_3:425264-425283 | None:intergenic | 40.0% |
TTTCAAACCCGGCAAAGTTT+GGG | + | chr7_3:425302-425321 | None:intergenic | 40.0% | |
! | TTTTCAAACCCGGCAAAGTT+TGG | + | chr7_3:425303-425322 | None:intergenic | 40.0% |
!! | TGCGTGCTTATTTTCAAACC+CGG | + | chr7_3:425313-425332 | None:intergenic | 40.0% |
! | CGGAATTTTCTTGATAGGAG+CGG | + | chr7_3:425370-425389 | None:intergenic | 40.0% |
! | GGTCTCGGAATTTTCTTGAT+AGG | + | chr7_3:425375-425394 | None:intergenic | 40.0% |
CATTCTTACATGAACGGGTA+AGG | + | chr7_3:425670-425689 | None:intergenic | 40.0% | |
! | TTAACTTGGCCACATCATAG+TGG | - | chr7_3:425711-425730 | Msa1087650:intron | 40.0% |
TAGTGGAGTTTCCCTTAAAC+GGG | - | chr7_3:425728-425747 | Msa1087650:intron | 40.0% | |
! | ATCATAGAAAGCGCATGTCT+TGG | + | chr7_3:425852-425871 | None:intergenic | 40.0% |
CCCATTCCATAAGTACTCTT+AGG | - | chr7_3:426012-426031 | Msa1087650:intron | 40.0% | |
!! | CCCTAAGAGTACTTATGGAA+TGG | + | chr7_3:426016-426035 | None:intergenic | 40.0% |
TTCCATAAGTACTCTTAGGG+AGG | - | chr7_3:426016-426035 | Msa1087650:intron | 40.0% | |
!! | ATCCTCCCTAAGAGTACTTA+TGG | + | chr7_3:426021-426040 | None:intergenic | 40.0% |
AGACCATAAGCCACTGAAAT+TGG | - | chr7_3:426108-426127 | Msa1087650:intron | 40.0% | |
GAGTACTATGTATGAGATCC+TGG | - | chr7_3:426149-426168 | Msa1087650:intron | 40.0% | |
TTCTTCTATCCTATGAAGCC+CGG | - | chr7_3:426351-426370 | Msa1087650:intron | 40.0% | |
CAATACTTCACGGATACTCT+CGG | - | chr7_3:426409-426428 | Msa1087650:intron | 40.0% | |
!! | TGAAGTATCGGTATCCGATA+CGG | + | chr7_3:426443-426462 | None:intergenic | 40.0% |
TATCGGATACCGATACTTCA+CGG | - | chr7_3:426443-426462 | Msa1087650:intron | 40.0% | |
TATGATACGACACAGGTACA+CGG | + | chr7_3:426820-426839 | None:intergenic | 40.0% | |
TAGATAGAAGCTATGAAGCC+CGG | + | chr7_3:426861-426880 | None:intergenic | 40.0% | |
! | GATATAATGCAGCCTTGTCA+TGG | + | chr7_3:426970-426989 | None:intergenic | 40.0% |
! | CATGCATGGTGAGAATGTTT+TGG | - | chr7_3:427084-427103 | Msa1087650:intron | 40.0% |
CGTACATACCATGAAAGAGA+TGG | - | chr7_3:427167-427186 | Msa1087650:intron | 40.0% | |
! | AAGTATAGGGCTGACTCATT+CGG | - | chr7_3:427313-427332 | Msa1087650:intron | 40.0% |
TCAGAGGATGAAATGAGTTG+TGG | - | chr7_3:427598-427617 | Msa1087650:intron | 40.0% | |
GGATGAAATGAGTTGTGGAA+AGG | - | chr7_3:427603-427622 | Msa1087650:intron | 40.0% | |
GAAATGCTCCTTCGTAAGTA+CGG | - | chr7_3:427694-427713 | Msa1087650:intron | 40.0% | |
AAATGCTCCTTCGTAAGTAC+GGG | - | chr7_3:427695-427714 | Msa1087650:intron | 40.0% | |
!! | GGATGCAAGAAAAGCATTGA+TGG | - | chr7_3:427780-427799 | Msa1087650:CDS | 40.0% |
!! | GAAAAGCATTGATGGATTGG+TGG | - | chr7_3:427788-427807 | Msa1087650:CDS | 40.0% |
TTTGTCCAACGAATGATTCG+AGG | - | chr7_3:427948-427967 | Msa1087650:intron | 40.0% | |
TTTCCAAATGAAGGAGACTC+CGG | + | chr7_3:428048-428067 | None:intergenic | 40.0% | |
CTCCTTCATTTGGAAACAGA+AGG | - | chr7_3:428052-428071 | Msa1087650:intron | 40.0% | |
ACCCTTCTGTTTCCAAATGA+AGG | + | chr7_3:428057-428076 | None:intergenic | 40.0% | |
! | AGGTTCCTAGTCCATTTTGT+TGG | - | chr7_3:428148-428167 | Msa1087650:CDS | 40.0% |
! | AGAAAACTTTTGGCATGGTG+AGG | - | chr7_3:428193-428212 | Msa1087650:five_prime_UTR | 40.0% |
TCAATCAGAGGAAAAGACAC+TGG | - | chr7_3:428444-428463 | Msa1087650:intron | 40.0% | |
CTTCTTTCGCAGATTAAGAC+AGG | + | chr7_3:428575-428594 | None:intergenic | 40.0% | |
! | ACCCTTTTGCTTGAATGTCA+TGG | - | chr7_3:428598-428617 | Msa1087650:intron | 40.0% |
!! | TCTGGATTGGACTTTTGAGA+TGG | + | chr7_3:428647-428666 | None:intergenic | 40.0% |
! | ATAGGCGTATTGTTCTGGAT+TGG | + | chr7_3:428660-428679 | None:intergenic | 40.0% |
! | TCCTTTTCCCCAGGTTTTCT+TGG | - | chr7_3:421919-421938 | Msa1087650:three_prime_UTR | 45.0% |
TCCAAGAAAACCTGGGGAAA+AGG | + | chr7_3:421923-421942 | None:intergenic | 45.0% | |
GAAAGGAAAGAGTGGAAAGC+TGG | + | chr7_3:421995-422014 | None:intergenic | 45.0% | |
AGAAGTGGGAAAGGAAAGAG+TGG | + | chr7_3:422003-422022 | None:intergenic | 45.0% | |
GTTTCTTCTCTAGCTAGCTG+AGG | - | chr7_3:422030-422049 | Msa1087650:three_prime_UTR | 45.0% | |
! | AGTGGGTCATATTGATGGCA+AGG | - | chr7_3:422478-422497 | Msa1087650:intron | 45.0% |
CAGGATCATCTCCTATCTCA+CGG | + | chr7_3:422977-422996 | None:intergenic | 45.0% | |
! | TGTTGCTTCATTGAAGGGCT+TGG | + | chr7_3:423223-423242 | None:intergenic | 45.0% |
TCATCCGATTACAACCGTTC+AGG | - | chr7_3:423303-423322 | Msa1087650:intron | 45.0% | |
!! | TCCAGGGCACCATATTTTCA+GGG | + | chr7_3:424210-424229 | None:intergenic | 45.0% |
TCGGTACACTTTGTACGAGA+TGG | - | chr7_3:424783-424802 | Msa1087650:intron | 45.0% | |
AGTGGAATACGAGAGACACT+CGG | + | chr7_3:425182-425201 | None:intergenic | 45.0% | |
CTAATATATAGGCAACGGGG+TGG | - | chr7_3:425212-425231 | Msa1087650:intron | 45.0% | |
CATTTGTCCCCAAACTTTGC+CGG | - | chr7_3:425291-425310 | Msa1087650:intron | 45.0% | |
ATTTGTCCCCAAACTTTGCC+GGG | - | chr7_3:425292-425311 | Msa1087650:intron | 45.0% | |
TTCAAACCCGGCAAAGTTTG+GGG | + | chr7_3:425301-425320 | None:intergenic | 45.0% | |
GTACATATCACCCACCAAAG+AGG | - | chr7_3:425501-425520 | Msa1087650:intron | 45.0% | |
AGTCCTACCCACAACTTTGT+GGG | - | chr7_3:425543-425562 | Msa1087650:intron | 45.0% | |
TGACTCACCCACAAAGTTGT+GGG | + | chr7_3:425553-425572 | None:intergenic | 45.0% | |
TTGACTCACCCACAAAGTTG+TGG | + | chr7_3:425554-425573 | None:intergenic | 45.0% | |
TTACATGAACGGGTAAGGTG+AGG | + | chr7_3:425665-425684 | None:intergenic | 45.0% | |
AGGGAAACTCCACTATGATG+TGG | + | chr7_3:425723-425742 | None:intergenic | 45.0% | |
AGTGGAGTTTCCCTTAAACG+GGG | - | chr7_3:425729-425748 | Msa1087650:intron | 45.0% | |
GGACCAATTTCAGTGGCTTA+TGG | + | chr7_3:426114-426133 | None:intergenic | 45.0% | |
AGCCACTGAAATTGGTCCAA+TGG | - | chr7_3:426116-426135 | Msa1087650:intron | 45.0% | |
CACCATTGGACCAATTTCAG+TGG | + | chr7_3:426121-426140 | None:intergenic | 45.0% | |
CTGAAATTGGTCCAATGGTG+AGG | - | chr7_3:426121-426140 | Msa1087650:intron | 45.0% | |
GTACTCAAACTCCTCACCAT+TGG | + | chr7_3:426135-426154 | None:intergenic | 45.0% | |
!! | CGAGAGTATCCGTGAAGTAT+TGG | + | chr7_3:426411-426430 | None:intergenic | 45.0% |
!! | GAAGTATCGGTATCCGATAC+GGG | + | chr7_3:426442-426461 | None:intergenic | 45.0% |
!! | CGAGAGTATCCGTGAAGTAT+CGG | + | chr7_3:426411-426430 | None:intergenic | 45.0% |
CGATACTTCACGGATACTCT+CGG | - | chr7_3:426453-426472 | Msa1087650:intron | 45.0% | |
ACCCGCACTCATATAGTATC+CGG | - | chr7_3:426839-426858 | Msa1087650:intron | 45.0% | |
! | AATGCAGCCTTGTCATGGAA+AGG | + | chr7_3:426965-426984 | None:intergenic | 45.0% |
GATTGGGACCATCTCTTTCA+TGG | + | chr7_3:427178-427197 | None:intergenic | 45.0% | |
GGAAAGGTTGAAGCAGTAGA+AGG | - | chr7_3:427619-427638 | Msa1087650:intron | 45.0% | |
AAGGTTGAAGCAGTAGAAGG+TGG | - | chr7_3:427622-427641 | Msa1087650:intron | 45.0% | |
GGTGGTCATGATGAACTTTG+TGG | - | chr7_3:427640-427659 | Msa1087650:intron | 45.0% | |
AATGCTCCTTCGTAAGTACG+GGG | - | chr7_3:427696-427715 | Msa1087650:intron | 45.0% | |
ATTGGTGGAACGTCCACTAT+AGG | - | chr7_3:427803-427822 | Msa1087650:CDS | 45.0% | |
TCAACTGAACTCCGGATTAC+CGG | - | chr7_3:428026-428045 | Msa1087650:intron | 45.0% | |
TTACCGGAGTCTCCTTCATT+TGG | - | chr7_3:428042-428061 | Msa1087650:intron | 45.0% | |
ACAGACCTACTCAGTGACAT+AGG | + | chr7_3:428710-428729 | None:intergenic | 45.0% | |
! | AAGTTTCTTGCTAGAGGTGC+AGG | - | chr7_3:428878-428897 | Msa1087650:five_prime_UTR | 45.0% |
!! | TATATTATTGTTTAAATTAT+TGG | - | chr7_3:422246-422265 | Msa1087650:CDS | 5.0% |
!!! | TTTTATTAAATATTTTATAG+TGG | + | chr7_3:423953-423972 | None:intergenic | 5.0% |
AGGCACACACTCTCACAACA+AGG | + | chr7_3:421890-421909 | None:intergenic | 50.0% | |
GGGGAAAAGGAAAGAGAGGA+AGG | + | chr7_3:421910-421929 | None:intergenic | 50.0% | |
! | TCCTCTCTTTCCTTTTCCCC+AGG | - | chr7_3:421910-421929 | Msa1087650:three_prime_UTR | 50.0% |
ACCTGGGGAAAAGGAAAGAG+AGG | + | chr7_3:421914-421933 | None:intergenic | 50.0% | |
GAAAGAGTGGAAAGCTGGGT+TGG | + | chr7_3:421990-422009 | None:intergenic | 50.0% | |
TACAGCATCAAGACCCGTGT+AGG | + | chr7_3:422146-422165 | None:intergenic | 50.0% | |
TCTGCTGCTGGATTGCATCT+AGG | - | chr7_3:422518-422537 | Msa1087650:intron | 50.0% | |
AAAGAGGGTGAGTTGCGATC+TGG | + | chr7_3:422633-422652 | None:intergenic | 50.0% | |
TCCTGACCTTGACCACTTCA+TGG | - | chr7_3:422992-423011 | Msa1087650:CDS | 50.0% | |
ACCATGAAGTGGTCAAGGTC+AGG | + | chr7_3:422996-423015 | None:intergenic | 50.0% | |
GAAAAGGGCCACTCATGTTC+AGG | + | chr7_3:423452-423471 | None:intergenic | 50.0% | |
ACCATCTCATGATTCGCCCA+AGG | + | chr7_3:423679-423698 | None:intergenic | 50.0% | |
!! | CAAGTGCCGAGTGTAGACTT+TGG | + | chr7_3:423852-423871 | None:intergenic | 50.0% |
!! | CCAGGGCACCATATTTTCAG+GGG | + | chr7_3:424209-424228 | None:intergenic | 50.0% |
!! | GTCCAGGGCACCATATTTTC+AGG | + | chr7_3:424211-424230 | None:intergenic | 50.0% |
TTAGCTGTGGTCCTGAGCAT+GGG | + | chr7_3:424248-424267 | None:intergenic | 50.0% | |
TTTAGCTGTGGTCCTGAGCA+TGG | + | chr7_3:424249-424268 | None:intergenic | 50.0% | |
TTCTTGATAGGAGCGGTACG+AGG | + | chr7_3:425363-425382 | None:intergenic | 50.0% | |
AATGCGAGGACCTCTTTGGT+GGG | + | chr7_3:425514-425533 | None:intergenic | 50.0% | |
TACCAATGCGAGGACCTCTT+TGG | + | chr7_3:425518-425537 | None:intergenic | 50.0% | |
GAGTCCTACCCACAACTTTG+TGG | - | chr7_3:425542-425561 | Msa1087650:intron | 50.0% | |
TCACCCACAAAGTTGTGGGT+AGG | + | chr7_3:425549-425568 | None:intergenic | 50.0% | |
ACCAAATCCGCCCCGTTTAA+GGG | + | chr7_3:425742-425761 | None:intergenic | 50.0% | |
! | TTAAACGGGGCGGATTTGGT+CGG | - | chr7_3:425742-425761 | Msa1087650:intron | 50.0% |
AATGGAGACGGTTTGAACCC+AGG | + | chr7_3:426170-426189 | None:intergenic | 50.0% | |
! | TTGGAGTATCCGGGCTTCAT+AGG | + | chr7_3:426363-426382 | None:intergenic | 50.0% |
GAAGCCCGGATACTCCAAAA+CGG | - | chr7_3:426365-426384 | Msa1087650:intron | 50.0% | |
!!! | GTGTCCGTTTTGGAGTATCC+GGG | + | chr7_3:426372-426391 | None:intergenic | 50.0% |
!!! | CGTGTCCGTTTTGGAGTATC+CGG | + | chr7_3:426373-426392 | None:intergenic | 50.0% |
! | ATACGGGTACGTGTCCGTTT+TGG | + | chr7_3:426382-426401 | None:intergenic | 50.0% |
TCTCGGATACGTACCCGTAT+CGG | - | chr7_3:426426-426445 | Msa1087650:intron | 50.0% | |
CCCGGATACTATATGAGTGC+GGG | + | chr7_3:426843-426862 | None:intergenic | 50.0% | |
CCCGCACTCATATAGTATCC+GGG | - | chr7_3:426840-426859 | Msa1087650:intron | 50.0% | |
GCCCGGATACTATATGAGTG+CGG | + | chr7_3:426844-426863 | None:intergenic | 50.0% | |
CTTTGTGGCACATCATGTCC+AGG | - | chr7_3:427655-427674 | Msa1087650:intron | 50.0% | |
ATGCTCCTTCGTAAGTACGG+GGG | - | chr7_3:427697-427716 | Msa1087650:intron | 50.0% | |
TGGGATAAGGCCACCTATAG+TGG | + | chr7_3:427819-427838 | None:intergenic | 50.0% | |
!! | CTATAGGTGGCCTTATCCCA+CGG | - | chr7_3:427819-427838 | Msa1087650:CDS | 50.0% |
TGAAGGAGACTCCGGTAATC+CGG | + | chr7_3:428040-428059 | None:intergenic | 50.0% | |
CTGCAGCTGTCAGATATGAC+TGG | - | chr7_3:428389-428408 | Msa1087650:intron | 50.0% | |
GTAAGTAGCACCAGCATAGC+AGG | - | chr7_3:428506-428525 | Msa1087650:intron | 50.0% | |
TTACAGAGGTCCTGCTATGC+TGG | + | chr7_3:428519-428538 | None:intergenic | 50.0% | |
AGGGCATAGGCGTATTGTTC+TGG | + | chr7_3:428665-428684 | None:intergenic | 50.0% | |
CTACTCAGTGACATAGGTGC+CGG | + | chr7_3:428704-428723 | None:intergenic | 50.0% | |
GCTGCTGGATTGCATCTAGG+AGG | - | chr7_3:422521-422540 | Msa1087650:intron | 55.0% | |
GCCTTGGGCGAATCATGAGA+TGG | - | chr7_3:423675-423694 | Msa1087650:intron | 55.0% | |
CCCCTGAAAATATGGTGCCC+TGG | - | chr7_3:424206-424225 | Msa1087650:intron | 55.0% | |
! | TATAGGCAACGGGGTGGGTT+AGG | - | chr7_3:425218-425237 | Msa1087650:intron | 55.0% |
!! | ATAGGCAACGGGGTGGGTTA+GGG | - | chr7_3:425219-425238 | Msa1087650:intron | 55.0% |
AGGAAACTCAGCCCCGATTG+GGG | + | chr7_3:425343-425362 | None:intergenic | 55.0% | |
GAGGAAACTCAGCCCCGATT+GGG | + | chr7_3:425344-425363 | None:intergenic | 55.0% | |
CAATGCGAGGACCTCTTTGG+TGG | + | chr7_3:425515-425534 | None:intergenic | 55.0% | |
CACCAAAGAGGTCCTCGCAT+TGG | - | chr7_3:425513-425532 | Msa1087650:intron | 55.0% | |
GGACTCATGCTACCAATGCG+AGG | + | chr7_3:425528-425547 | None:intergenic | 55.0% | |
GGAGTTTCCCTTAAACGGGG+CGG | - | chr7_3:425732-425751 | Msa1087650:intron | 55.0% | |
! | TCCCTTAAACGGGGCGGATT+TGG | - | chr7_3:425738-425757 | Msa1087650:intron | 55.0% |
GACCAAATCCGCCCCGTTTA+AGG | + | chr7_3:425743-425762 | None:intergenic | 55.0% | |
! | TAAACGGGGCGGATTTGGTC+GGG | - | chr7_3:425743-425762 | Msa1087650:intron | 55.0% |
! | GGATTTGGTCGGGTTTGGGT+AGG | - | chr7_3:425753-425772 | Msa1087650:intron | 55.0% |
TTTGGTCGGGTTTGGGTAGG+TGG | - | chr7_3:425756-425775 | Msa1087650:intron | 55.0% | |
TTGGTCGGGTTTGGGTAGGT+GGG | - | chr7_3:425757-425776 | Msa1087650:intron | 55.0% | |
GTGCGGGTATGATACGACAC+AGG | + | chr7_3:426827-426846 | None:intergenic | 55.0% | |
GGTTAGATCACGAGGCAGCA+GGG | - | chr7_3:427572-427591 | Msa1087650:intron | 55.0% | |
GGTAACCCCCGTACTTACGA+AGG | + | chr7_3:427705-427724 | None:intergenic | 55.0% | |
GGTGGAACGTCCACTATAGG+TGG | - | chr7_3:427806-427825 | Msa1087650:CDS | 55.0% | |
CGGCACCTATGTCACTGAGT+AGG | - | chr7_3:428702-428721 | Msa1087650:intron | 55.0% | |
AGGACAGATGGTCGTGACGC+GGG | + | chr7_3:423603-423622 | None:intergenic | 60.0% | |
GAGGACAGATGGTCGTGACG+CGG | + | chr7_3:423604-423623 | None:intergenic | 60.0% | |
!! | TAGGCAACGGGGTGGGTTAG+GGG | - | chr7_3:425220-425239 | Msa1087650:intron | 60.0% |
CACGCATTTCCGCCCCCAAT+CGG | - | chr7_3:425327-425346 | Msa1087650:intron | 60.0% | |
ACGCATTTCCGCCCCCAATC+GGG | - | chr7_3:425328-425347 | Msa1087650:intron | 60.0% | |
GGAAACTCAGCCCCGATTGG+GGG | + | chr7_3:425342-425361 | None:intergenic | 60.0% | |
CGAGGAAACTCAGCCCCGAT+TGG | + | chr7_3:425345-425364 | None:intergenic | 60.0% | |
! | GGGCGGATTTGGTCGGGTTT+GGG | - | chr7_3:425749-425768 | Msa1087650:intron | 60.0% |
GGGTTAGATCACGAGGCAGC+AGG | - | chr7_3:427571-427590 | Msa1087650:intron | 60.0% | |
!! | GCTGGGTTGGCTACAGCACC+TGG | + | chr7_3:421977-421996 | None:intergenic | 65.0% |
TGGTCCTGAGCATGGGCCGA+GGG | + | chr7_3:424241-424260 | None:intergenic | 65.0% | |
CGCATTTCCGCCCCCAATCG+GGG | - | chr7_3:425329-425348 | Msa1087650:intron | 65.0% | |
AACTCAGCCCCGATTGGGGG+CGG | + | chr7_3:425339-425358 | None:intergenic | 65.0% | |
! | GGGGCGGATTTGGTCGGGTT+TGG | - | chr7_3:425748-425767 | Msa1087650:intron | 65.0% |
CGAGGCAGCAGGGACATCAG+AGG | - | chr7_3:427582-427601 | Msa1087650:intron | 65.0% | |
GGTCGTGACGCGGGCCTCAA+TGG | + | chr7_3:423594-423613 | None:intergenic | 70.0% | |
GTCCTGAGCATGGGCCGAGG+GGG | + | chr7_3:424239-424258 | None:intergenic | 70.0% | |
GGTCCTGAGCATGGGCCGAG+GGG | + | chr7_3:424240-424259 | None:intergenic | 70.0% | |
GTGGTCCTGAGCATGGGCCG+AGG | + | chr7_3:424242-424261 | None:intergenic | 70.0% | |
GCCCTGGACTGCCTCCCCCT+CGG | - | chr7_3:424222-424241 | Msa1087650:intron | 75.0% | |
GCCGAGGGGGAGGCAGTCCA+GGG | + | chr7_3:424226-424245 | None:intergenic | 75.0% | |
CTGAGCATGGGCCGAGGGGG+AGG | + | chr7_3:424236-424255 | None:intergenic | 75.0% | |
CTCCCCCTCGGCCCATGCTC+AGG | - | chr7_3:424234-424253 | Msa1087650:intron | 75.0% | |
! | GGCCGAGGGGGAGGCAGTCC+AGG | + | chr7_3:424227-424246 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 421824 | 428931 | 421824 | ID=Msa1087650;Name=Msa1087650 |
chr7_3 | mRNA | 421824 | 428931 | 421824 | ID=Msa1087650-mRNA-1;Parent=Msa1087650;Name=Msa1087650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=293|1|1|1|0.8|0.66|6|393|267 |
chr7_3 | exon | 421824 | 422378 | 421824 | ID=Msa1087650-mRNA-1:exon:164;Parent=Msa1087650-mRNA-1 |
chr7_3 | exon | 422915 | 423177 | 422915 | ID=Msa1087650-mRNA-1:exon:163;Parent=Msa1087650-mRNA-1 |
chr7_3 | exon | 427431 | 427578 | 427431 | ID=Msa1087650-mRNA-1:exon:162;Parent=Msa1087650-mRNA-1 |
chr7_3 | exon | 427742 | 427852 | 427742 | ID=Msa1087650-mRNA-1:exon:161;Parent=Msa1087650-mRNA-1 |
chr7_3 | exon | 428065 | 428275 | 428065 | ID=Msa1087650-mRNA-1:exon:160;Parent=Msa1087650-mRNA-1 |
chr7_3 | exon | 428730 | 428931 | 428730 | ID=Msa1087650-mRNA-1:exon:159;Parent=Msa1087650-mRNA-1 |
chr7_3 | five_prime_UTR | 428730 | 428931 | 428730 | ID=Msa1087650-mRNA-1:five_prime_utr;Parent=Msa1087650-mRNA-1 |
chr7_3 | five_prime_UTR | 428185 | 428275 | 428185 | ID=Msa1087650-mRNA-1:five_prime_utr;Parent=Msa1087650-mRNA-1 |
chr7_3 | CDS | 428065 | 428184 | 428065 | ID=Msa1087650-mRNA-1:cds;Parent=Msa1087650-mRNA-1 |
chr7_3 | CDS | 427742 | 427852 | 427742 | ID=Msa1087650-mRNA-1:cds;Parent=Msa1087650-mRNA-1 |
chr7_3 | CDS | 427431 | 427578 | 427431 | ID=Msa1087650-mRNA-1:cds;Parent=Msa1087650-mRNA-1 |
chr7_3 | CDS | 422915 | 423177 | 422915 | ID=Msa1087650-mRNA-1:cds;Parent=Msa1087650-mRNA-1 |
chr7_3 | CDS | 422217 | 422378 | 422217 | ID=Msa1087650-mRNA-1:cds;Parent=Msa1087650-mRNA-1 |
chr7_3 | three_prime_UTR | 421824 | 422216 | 421824 | ID=Msa1087650-mRNA-1:three_prime_utr;Parent=Msa1087650-mRNA-1 |
Gene Sequence |
Protein sequence |