AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228200 MtrunA17_Chr8g0335021 94.760 458 24 0 1 458 1 458 0.0 883
Msa1228200 MtrunA17_Chr8g0335071 60.566 459 162 10 4 455 13 459 0.0 532
Msa1228200 MtrunA17_Chr8g0334971 53.097 452 193 6 8 455 8 444 1.12e-158 456
Msa1228200 MtrunA17_Chr8g0335061 50.873 458 205 7 1 454 1 442 3.16e-157 452
Msa1228200 MtrunA17_Chr8g0334951 47.865 445 198 10 9 449 11 425 5.06e-133 390
Msa1228200 MtrunA17_Chr8g0334911 48.993 447 194 11 8 449 9 426 2.68e-131 386
Msa1228200 MtrunA17_Chr8g0335011 45.233 493 210 13 9 455 19 497 4.79e-130 385
Msa1228200 MtrunA17_Chr4g0062011 85.271 129 18 1 151 279 3 130 9.49e-72 223
Msa1228200 MtrunA17_Chr6g0457371 36.386 415 211 15 28 438 26 391 9.11e-67 219
Msa1228200 MtrunA17_Chr6g0452551 33.790 438 225 14 19 441 10 397 5.74e-65 214
Msa1228200 MtrunA17_Chr6g0452561 33.408 449 252 14 9 446 7 419 8.88e-65 214
Msa1228200 MtrunA17_Chr6g0452601 33.710 442 237 13 17 446 15 412 2.83e-64 213
Msa1228200 MtrunA17_Chr6g0452611 33.095 420 228 10 25 438 22 394 2.63e-62 207
Msa1228200 MtrunA17_Chr6g0452531 34.211 418 227 12 25 438 23 396 3.10e-62 207
Msa1228200 MtrunA17_Chr6g0452501 33.573 417 231 9 25 438 23 396 1.52e-61 206
Msa1228200 MtrunA17_Chr3g0138001 33.638 437 243 11 9 437 8 405 1.78e-58 201
Msa1228200 MtrunA17_Chr6g0452591 32.644 435 237 14 20 446 48 434 4.01e-58 197
Msa1228200 MtrunA17_Chr3g0118601 30.819 464 253 12 9 446 22 443 4.56e-58 197
Msa1228200 MtrunA17_Chr6g0452161 34.426 427 232 15 20 437 18 405 4.73e-58 197
Msa1228200 MtrunA17_Chr7g0265891 29.120 443 262 16 1 429 23 427 5.93e-44 160
Msa1228200 MtrunA17_Chr5g0439641 28.139 462 260 14 25 455 30 450 3.76e-43 157
Msa1228200 MtrunA17_Chr2g0297831 28.037 428 263 14 24 443 64 454 2.88e-42 156
Msa1228200 MtrunA17_Chr2g0296801 30.670 388 217 10 64 446 2 342 4.79e-42 152
Msa1228200 MtrunA17_Chr5g0401791 30.064 469 251 15 7 433 74 507 5.78e-42 156
Msa1228200 MtrunA17_Chr6g0452571 32.418 364 197 11 98 457 33 351 2.21e-41 150
Msa1228200 MtrunA17_Chr2g0300311 28.103 427 265 15 24 443 47 438 1.31e-39 149
Msa1228200 MtrunA17_Chr5g0439721 27.727 440 255 13 23 444 28 422 3.04e-37 142
Msa1228200 MtrunA17_Chr7g0218171 32.917 240 124 6 213 444 79 289 1.73e-30 120
Msa1228200 MtrunA17_Chr6g0452541 34.112 214 116 5 226 437 29 219 1.13e-28 113
Msa1228200 MtrunA17_Chr8g0334981 54.878 82 37 0 374 455 1 82 1.58e-25 99.8
Msa1228200 MtrunA17_Chr5g0440401 30.151 199 118 2 258 455 39 217 6.38e-21 91.3
Msa1228200 MtrunA17_Chr7g0238511 23.380 432 265 11 41 451 43 429 2.07e-20 93.2
Msa1228200 MtrunA17_Chr5g0439681 28.378 222 132 4 241 455 110 311 6.10e-20 90.5
Msa1228200 MtrunA17_Chr7g0238111 24.208 442 269 15 29 452 32 425 7.57e-20 91.7
Msa1228200 MtrunA17_Chr8g0354591 25.508 443 272 16 29 438 26 443 5.53e-19 89.4
Msa1228200 MtrunA17_Chr8g0354871 26.293 232 133 5 227 444 164 371 1.25e-18 87.4
Msa1228200 MtrunA17_Chr7g0238211 27.219 169 106 2 262 429 5 157 1.28e-16 77.8
Msa1228200 MtrunA17_Chr7g0238141 24.408 422 248 14 41 431 42 423 1.28e-16 82.0
Msa1228200 MtrunA17_Chr7g0238101 23.183 509 281 18 1 442 2 467 1.61e-16 81.6
Msa1228200 MtrunA17_Chr7g0238231 23.214 448 300 14 41 451 43 483 9.29e-16 79.3
Msa1228200 MtrunA17_Chr7g0238081 29.091 165 100 3 262 425 5 153 2.90e-15 73.9
Msa1228200 MtrunA17_Chr5g0439661 32.558 172 100 7 14 173 14 181 3.62e-15 73.9
Msa1228200 MtrunA17_Chr7g0238171 30.366 191 112 5 262 451 342 512 3.92e-15 77.4
Msa1228200 MtrunA17_Chr7g0238091 30.496 141 96 2 304 442 67 207 1.26e-14 73.2
Msa1228200 MtrunA17_Chr7g0238191 23.380 432 259 15 29 431 27 415 1.97e-14 75.1
Msa1228200 MtrunA17_Chr7g0232521 26.554 177 113 3 257 432 37 197 5.31e-14 70.9
Msa1228200 MtrunA17_Chr1g0170351 25.000 412 251 14 25 411 25 403 1.37e-13 72.8
Msa1228200 MtrunA17_Chr7g0238241 27.811 169 105 3 262 429 289 441 1.41e-13 72.4
Msa1228200 MtrunA17_Chr7g0238051 27.083 144 104 1 304 446 213 356 4.18e-13 70.5
Msa1228200 MtrunA17_Chr7g0238131 24.679 312 187 8 157 442 114 403 1.39e-12 69.3
Msa1228200 MtrunA17_Chr2g0297821 24.731 186 123 4 260 443 1 171 1.57e-12 66.2
Msa1228200 MtrunA17_Chr3g0107251 27.559 381 197 19 29 370 32 372 5.71e-12 67.4
Msa1228200 MtrunA17_Chr7g0238181 24.917 301 184 7 153 452 89 348 8.61e-12 66.6
Msa1228200 MtrunA17_Chr7g0220521 25.668 187 118 3 258 443 364 530 1.00e-11 67.0
Msa1228200 MtrunA17_Chr8g0335001 44.286 70 37 2 9 77 38 106 3.22e-11 60.1
Msa1228200 MtrunA17_Chr7g0218161 66.667 36 12 0 20 55 18 53 4.00e-11 58.5
Msa1228200 MtrunA17_Chr6g0452511 38.095 63 39 0 330 392 1 63 9.33e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228200 AT2G28580.6 30.455 440 251 11 25 446 39 441 2.43e-54 188
Msa1228200 AT2G28580.1 30.455 440 251 11 25 446 107 509 1.29e-53 188
Msa1228200 AT2G28580.2 30.455 440 251 11 25 446 121 523 1.94e-53 188
Msa1228200 AT4G31980.1 31.325 415 236 13 23 433 289 658 1.86e-52 187
Msa1228200 AT2G28580.5 29.698 431 249 10 25 446 107 492 1.14e-51 182
Msa1228200 AT2G28580.4 29.698 431 249 10 25 446 121 506 1.67e-51 182
Msa1228200 AT2G44930.1 29.047 451 250 13 25 447 82 490 8.09e-51 180
Msa1228200 AT2G36430.1 31.144 411 239 15 27 429 45 419 1.41e-50 178
Msa1228200 AT3G50120.1 27.434 452 269 11 20 444 96 515 2.67e-44 162
Msa1228200 AT1G67150.4 28.146 437 257 13 22 444 1 394 1.18e-43 158
Msa1228200 AT1G67150.1 28.146 437 257 13 22 444 1 394 1.18e-43 158
Msa1228200 AT3G50170.1 27.740 447 260 10 26 444 112 523 1.20e-43 161
Msa1228200 AT5G11290.2 25.778 450 287 11 2 446 6 413 5.90e-43 157
Msa1228200 AT1G67150.2 27.891 441 257 13 22 444 1 398 6.93e-43 156
Msa1228200 AT3G50140.1 28.285 449 257 14 25 444 111 523 1.64e-41 155
Msa1228200 AT3G50150.1 25.847 472 290 12 12 456 68 506 2.67e-41 154
Msa1228200 AT3G50160.1 26.742 445 265 12 25 456 102 498 7.28e-40 150
Msa1228200 AT3G47200.1 28.539 445 263 13 18 442 37 446 4.39e-39 147
Msa1228200 AT3G47200.2 28.539 445 263 13 18 442 37 446 4.39e-39 147
Msa1228200 AT3G50130.1 28.160 451 257 13 12 429 117 533 4.46e-39 149
Msa1228200 AT3G50180.1 28.767 438 251 15 26 444 177 572 3.63e-38 146
Msa1228200 AT1G65985.1 27.938 451 236 14 28 429 15 425 8.00e-37 140
Msa1228200 AT1G65985.2 27.938 451 236 14 28 429 15 425 8.00e-37 140
Msa1228200 AT3G47250.3 26.593 455 264 14 18 444 52 464 1.01e-36 141
Msa1228200 AT3G47250.2 26.593 455 264 14 18 444 52 464 1.01e-36 141
Msa1228200 AT3G47250.1 26.593 455 264 14 18 444 52 464 1.01e-36 141
Msa1228200 AT2G28580.3 30.769 364 197 11 25 370 121 447 8.00e-36 138
Msa1228200 AT3G47210.1 28.395 405 243 11 18 413 84 450 7.83e-35 135
Msa1228200 AT5G22550.2 25.536 466 283 13 27 450 44 487 8.54e-32 127
Msa1228200 AT3G50190.1 27.315 432 254 14 25 444 94 477 5.56e-31 125
Msa1228200 AT5G22540.1 25.783 415 262 11 25 429 29 407 1.37e-30 123
Msa1228200 AT5G11290.1 23.636 385 250 9 64 446 2 344 9.52e-28 114
Msa1228200 AT1G67150.3 24.485 437 230 15 22 444 1 351 1.74e-26 110
Msa1228200 AT5G22560.1 28.390 236 134 6 24 240 44 263 9.52e-25 107
Msa1228200 AT3G44710.1 32.068 237 127 10 15 238 34 249 2.05e-22 100
Msa1228200 AT3G50170.2 26.298 289 172 8 26 288 112 385 3.87e-20 92.8
Msa1228200 AT3G60470.1 31.522 184 105 3 264 446 365 528 8.72e-20 92.4
Msa1228200 AT3G60470.1 31.667 180 94 5 21 173 26 203 2.72e-16 81.6
Msa1228200 AT3G50140.2 27.835 291 167 10 25 288 111 385 1.03e-18 88.6
Msa1228200 AT3G50150.2 23.188 345 218 12 25 338 88 416 3.20e-17 84.0
Msa1228200 AT3G02645.1 27.374 179 111 2 254 431 338 498 1.69e-15 79.3
Msa1228200 AT3G50190.4 26.296 270 166 10 25 288 94 336 1.75e-13 72.0
Msa1228200 AT3G50190.3 26.296 270 166 10 25 288 94 336 1.75e-13 72.0
Msa1228200 AT3G50190.2 26.296 270 166 10 25 288 94 336 2.30e-13 71.6

Find 54 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAGGCTCAATGATTTC+TGG 0.230505 8_2:-3686471 None:intergenic
TCAAATTCCTATGTTTGTTT+TGG 0.230982 8_2:+3686914 Msa1228200:CDS
TAACTGGTGGAAACATTATA+TGG 0.253364 8_2:+3687655 Msa1228200:CDS
GAATTGGCAACATTGGTTAA+TGG 0.296171 8_2:+3687560 Msa1228200:CDS
AGTACATATTCTGGTCTAAA+AGG 0.297271 8_2:-3687185 None:intergenic
GCTGTTCTTAGTACATATTC+TGG 0.309895 8_2:-3687194 None:intergenic
CTGCATGACTTCCAAGTTCA+TGG 0.314386 8_2:-3687538 None:intergenic
TGTTTCTCTTGATTAAGTTC+TGG 0.332904 8_2:-3686600 None:intergenic
TCCAAGAGAAATTCAAGTTA+AGG 0.333547 8_2:+3687136 Msa1228200:CDS
ATCCTGGCAAAGTTCTTGTT+TGG 0.335574 8_2:-3686739 None:intergenic
AAGCAACAGAATGTGTTCTT+AGG 0.348136 8_2:+3687387 Msa1228200:CDS
ACACCAAAGTTTATCTCAAT+TGG 0.352179 8_2:+3686558 Msa1228200:CDS
CCAAGAGAAATTCAAGTTAA+GGG 0.361703 8_2:+3687137 Msa1228200:CDS
TGAATGAACATTATAATAAC+TGG 0.371937 8_2:+3687639 Msa1228200:CDS
GACATTGTTCGAACGCGATT+AGG 0.372840 8_2:-3687412 None:intergenic
AAATAAACAAACTTTAGCTT+TGG 0.384668 8_2:+3686662 Msa1228200:CDS
CCCTTAACTTGAATTTCTCT+TGG 0.389209 8_2:-3687137 None:intergenic
TTGTTATGGAAAGATCATTA+AGG 0.389525 8_2:+3687613 Msa1228200:CDS
GAATGGTTGCAATAGCAATA+AGG 0.400363 8_2:+3686971 Msa1228200:CDS
ACTTGGAAGTCATGCAGAAT+TGG 0.403752 8_2:+3687544 Msa1228200:CDS
ATCTAATCAAATCAGTGAAA+TGG 0.406351 8_2:-3687103 None:intergenic
ACATGAAGATGTTGAGTTGT+TGG 0.443426 8_2:+3687496 Msa1228200:CDS
GGACCAATTGAGATAAACTT+TGG 0.444411 8_2:-3686561 None:intergenic
ATTTCATGTTTACAACATCA+TGG 0.446527 8_2:+3686850 Msa1228200:CDS
AGAGTTAGTTCAACTGTTGT+TGG 0.459714 8_2:+3687713 Msa1228200:CDS
TAAGAACACATTCTGTTGCT+TGG 0.460229 8_2:-3687385 None:intergenic
TTCCAAACAAGAACTTTGCC+AGG 0.463658 8_2:+3686737 Msa1228200:CDS
AACATTATATGGGAATGTTA+AGG 0.469604 8_2:+3687666 Msa1228200:CDS
ATTAGTTTCGAGAAAGTTCA+AGG 0.472626 8_2:+3687239 Msa1228200:CDS
GTGGTGACATCAAATTGTTA+TGG 0.484272 8_2:+3687599 Msa1228200:CDS
GAAATCATTAGCCATGAACT+TGG 0.500879 8_2:+3687527 Msa1228200:CDS
GCTACAAAGTTGAGTGAAGC+AGG 0.504844 8_2:+3687215 Msa1228200:CDS
CATAGTTGCATATGAAAGGT+TGG 0.506971 8_2:-3687445 None:intergenic
TCTGGATTCTGACTATGAAA+AGG 0.511649 8_2:-3686582 None:intergenic
AACTGGTGGAAACATTATAT+GGG 0.515685 8_2:+3687656 Msa1228200:CDS
GATTTACAAAATGACACAAA+GGG 0.517121 8_2:+3686872 Msa1228200:CDS
CTTGGTCTACATTCAAATGC+GGG 0.526420 8_2:-3687367 None:intergenic
AATTCCTCCAAAACAAACAT+AGG 0.529945 8_2:-3686921 None:intergenic
CTTCATTCAACTTCAAGAGA+TGG 0.534037 8_2:-3686527 None:intergenic
TCATGCAGAATTGGCAACAT+TGG 0.537428 8_2:+3687553 Msa1228200:CDS
GTGTTATTAGCTGAAAAGAA+TGG 0.538677 8_2:+3686954 Msa1228200:CDS
GAAACATAGTTGCATATGAA+AGG 0.547120 8_2:-3687449 None:intergenic
GATTCGACAAATTTAAAACA+TGG 0.566903 8_2:-3687332 None:intergenic
TTCAACTTCAAGAGATGGTG+AGG 0.578382 8_2:-3686522 None:intergenic
AAATCAGTGAAATGGTTGCA+AGG 0.586489 8_2:-3687095 None:intergenic
ACAGTTGAACTAACTCTCCA+AGG 0.590172 8_2:-3687707 None:intergenic
ATCAAGAGAAACAGAAACAA+AGG 0.600906 8_2:+3686610 Msa1228200:CDS
GCTTGGTCTACATTCAAATG+CGG 0.614751 8_2:-3687368 None:intergenic
ATGAACATTATAATAACTGG+TGG 0.615438 8_2:+3687642 Msa1228200:CDS
GGATTTACAAAATGACACAA+AGG 0.620547 8_2:+3686871 Msa1228200:CDS
TGGTCTTTGCAAATATGTTG+TGG 0.629307 8_2:+3687580 Msa1228200:CDS
TTGATTATGTGCTGAATCTG+TGG 0.644996 8_2:-3686444 None:intergenic
TTATATGGGAATGTTAAGGT+CGG 0.661560 8_2:+3687670 Msa1228200:CDS
TTTGGAGGAATTACACAGAG+GGG 0.718017 8_2:+3686932 Msa1228200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAACAAACTTTAGCTT+TGG + chr8_2:3686662-3686681 Msa1228200:CDS 20.0%
!! AAAGTTAACAAGTCAAAAAT+TGG + chr8_2:3687052-3687071 Msa1228200:CDS 20.0%
!! TGAATGAACATTATAATAAC+TGG + chr8_2:3687639-3687658 Msa1228200:CDS 20.0%
!!! AAATAAACAAACTTTAGCTT+TGG + chr8_2:3686662-3686681 Msa1228200:CDS 20.0%
!! AAAGTTAACAAGTCAAAAAT+TGG + chr8_2:3687052-3687071 Msa1228200:CDS 20.0%
!! TGAATGAACATTATAATAAC+TGG + chr8_2:3687639-3687658 Msa1228200:CDS 20.0%
!! CAACATTTTTCATGTAACAT+AGG - chr8_2:3686489-3686508 None:intergenic 25.0%
! TGAAAAATGTTGCATTTACA+AGG + chr8_2:3686497-3686516 Msa1228200:CDS 25.0%
! ATTTCATGTTTACAACATCA+TGG + chr8_2:3686850-3686869 Msa1228200:CDS 25.0%
! GATTTACAAAATGACACAAA+GGG + chr8_2:3686872-3686891 Msa1228200:CDS 25.0%
!! TCAAATTCCTATGTTTGTTT+TGG + chr8_2:3686914-3686933 Msa1228200:CDS 25.0%
!!! TTTTGACTTGTTAACTTTTG+AGG - chr8_2:3687050-3687069 None:intergenic 25.0%
! ATCTAATCAAATCAGTGAAA+TGG - chr8_2:3687106-3687125 None:intergenic 25.0%
!! GATTCGACAAATTTAAAACA+TGG - chr8_2:3687335-3687354 None:intergenic 25.0%
! TTGTTATGGAAAGATCATTA+AGG + chr8_2:3687613-3687632 Msa1228200:CDS 25.0%
! ATGAACATTATAATAACTGG+TGG + chr8_2:3687642-3687661 Msa1228200:CDS 25.0%
! AACATTATATGGGAATGTTA+AGG + chr8_2:3687666-3687685 Msa1228200:CDS 25.0%
!! GTCAATTTTCTTAGAGTTAT+TGG + chr8_2:3687761-3687780 Msa1228200:CDS 25.0%
!! CAACATTTTTCATGTAACAT+AGG - chr8_2:3686489-3686508 None:intergenic 25.0%
! TGAAAAATGTTGCATTTACA+AGG + chr8_2:3686497-3686516 Msa1228200:CDS 25.0%
! ATTTCATGTTTACAACATCA+TGG + chr8_2:3686850-3686869 Msa1228200:CDS 25.0%
! GATTTACAAAATGACACAAA+GGG + chr8_2:3686872-3686891 Msa1228200:CDS 25.0%
!! TCAAATTCCTATGTTTGTTT+TGG + chr8_2:3686914-3686933 Msa1228200:CDS 25.0%
!!! TTTTGACTTGTTAACTTTTG+AGG - chr8_2:3687050-3687069 None:intergenic 25.0%
! ATCTAATCAAATCAGTGAAA+TGG - chr8_2:3687106-3687125 None:intergenic 25.0%
!! GATTCGACAAATTTAAAACA+TGG - chr8_2:3687335-3687354 None:intergenic 25.0%
! TTGTTATGGAAAGATCATTA+AGG + chr8_2:3687613-3687632 Msa1228200:CDS 25.0%
! ATGAACATTATAATAACTGG+TGG + chr8_2:3687642-3687661 Msa1228200:CDS 25.0%
! AACATTATATGGGAATGTTA+AGG + chr8_2:3687666-3687685 Msa1228200:CDS 25.0%
!! GTCAATTTTCTTAGAGTTAT+TGG + chr8_2:3687761-3687780 Msa1228200:CDS 25.0%
ACACCAAAGTTTATCTCAAT+TGG + chr8_2:3686558-3686577 Msa1228200:CDS 30.0%
TGTTTCTCTTGATTAAGTTC+TGG - chr8_2:3686603-3686622 None:intergenic 30.0%
ATCAAGAGAAACAGAAACAA+AGG + chr8_2:3686610-3686629 Msa1228200:CDS 30.0%
!!! AAAGGTACTTTCATGCTTTT+TGG + chr8_2:3686628-3686647 Msa1228200:CDS 30.0%
! GTTAGACTCAGTTTTCATAA+TGG + chr8_2:3686785-3686804 Msa1228200:CDS 30.0%
GGATTTACAAAATGACACAA+AGG + chr8_2:3686871-3686890 Msa1228200:CDS 30.0%
!!! AATTCCTATGTTTGTTTTGG+AGG + chr8_2:3686917-3686936 Msa1228200:CDS 30.0%
AATTCCTCCAAAACAAACAT+AGG - chr8_2:3686924-3686943 None:intergenic 30.0%
! GTGTTATTAGCTGAAAAGAA+TGG + chr8_2:3686954-3686973 Msa1228200:CDS 30.0%
! TCCAAGAGAAATTCAAGTTA+AGG + chr8_2:3687136-3687155 Msa1228200:CDS 30.0%
! CCAAGAGAAATTCAAGTTAA+GGG + chr8_2:3687137-3687156 Msa1228200:CDS 30.0%
!! AAAGGTGTGAAACTTTTTGA+TGG - chr8_2:3687170-3687189 None:intergenic 30.0%
AGTACATATTCTGGTCTAAA+AGG - chr8_2:3687188-3687207 None:intergenic 30.0%
! ATTAGTTTCGAGAAAGTTCA+AGG + chr8_2:3687239-3687258 Msa1228200:CDS 30.0%
GAAACATAGTTGCATATGAA+AGG - chr8_2:3687452-3687471 None:intergenic 30.0%
TAACTGGTGGAAACATTATA+TGG + chr8_2:3687655-3687674 Msa1228200:CDS 30.0%
AACTGGTGGAAACATTATAT+GGG + chr8_2:3687656-3687675 Msa1228200:CDS 30.0%
TTATATGGGAATGTTAAGGT+CGG + chr8_2:3687670-3687689 Msa1228200:CDS 30.0%
ACACCAAAGTTTATCTCAAT+TGG + chr8_2:3686558-3686577 Msa1228200:CDS 30.0%
TGTTTCTCTTGATTAAGTTC+TGG - chr8_2:3686603-3686622 None:intergenic 30.0%
ATCAAGAGAAACAGAAACAA+AGG + chr8_2:3686610-3686629 Msa1228200:CDS 30.0%
!!! AAAGGTACTTTCATGCTTTT+TGG + chr8_2:3686628-3686647 Msa1228200:CDS 30.0%
! GTTAGACTCAGTTTTCATAA+TGG + chr8_2:3686785-3686804 Msa1228200:CDS 30.0%
GGATTTACAAAATGACACAA+AGG + chr8_2:3686871-3686890 Msa1228200:CDS 30.0%
!!! AATTCCTATGTTTGTTTTGG+AGG + chr8_2:3686917-3686936 Msa1228200:CDS 30.0%
AATTCCTCCAAAACAAACAT+AGG - chr8_2:3686924-3686943 None:intergenic 30.0%
! GTGTTATTAGCTGAAAAGAA+TGG + chr8_2:3686954-3686973 Msa1228200:CDS 30.0%
! TCCAAGAGAAATTCAAGTTA+AGG + chr8_2:3687136-3687155 Msa1228200:CDS 30.0%
! CCAAGAGAAATTCAAGTTAA+GGG + chr8_2:3687137-3687156 Msa1228200:CDS 30.0%
!! AAAGGTGTGAAACTTTTTGA+TGG - chr8_2:3687170-3687189 None:intergenic 30.0%
AGTACATATTCTGGTCTAAA+AGG - chr8_2:3687188-3687207 None:intergenic 30.0%
! ATTAGTTTCGAGAAAGTTCA+AGG + chr8_2:3687239-3687258 Msa1228200:CDS 30.0%
GAAACATAGTTGCATATGAA+AGG - chr8_2:3687452-3687471 None:intergenic 30.0%
TAACTGGTGGAAACATTATA+TGG + chr8_2:3687655-3687674 Msa1228200:CDS 30.0%
AACTGGTGGAAACATTATAT+GGG + chr8_2:3687656-3687675 Msa1228200:CDS 30.0%
TTATATGGGAATGTTAAGGT+CGG + chr8_2:3687670-3687689 Msa1228200:CDS 30.0%
TTGATTATGTGCTGAATCTG+TGG - chr8_2:3686447-3686466 None:intergenic 35.0%
AACATAGGCTCAATGATTTC+TGG - chr8_2:3686474-3686493 None:intergenic 35.0%
CTTCATTCAACTTCAAGAGA+TGG - chr8_2:3686530-3686549 None:intergenic 35.0%
GGACCAATTGAGATAAACTT+TGG - chr8_2:3686564-3686583 None:intergenic 35.0%
TCTGGATTCTGACTATGAAA+AGG - chr8_2:3686585-3686604 None:intergenic 35.0%
TTTCCAAAAACTTCTCATCC+TGG - chr8_2:3686758-3686777 None:intergenic 35.0%
!! TTTTGGAGGAATTACACAGA+GGG + chr8_2:3686931-3686950 Msa1228200:CDS 35.0%
GAATGGTTGCAATAGCAATA+AGG + chr8_2:3686971-3686990 Msa1228200:CDS 35.0%
AAATCAGTGAAATGGTTGCA+AGG - chr8_2:3687098-3687117 None:intergenic 35.0%
! CCCTTAACTTGAATTTCTCT+TGG - chr8_2:3687140-3687159 None:intergenic 35.0%
GCTGTTCTTAGTACATATTC+TGG - chr8_2:3687197-3687216 None:intergenic 35.0%
CACAAAAACCAGCTCAAAAT+CGG - chr8_2:3687299-3687318 None:intergenic 35.0%
TAAGAACACATTCTGTTGCT+TGG - chr8_2:3687388-3687407 None:intergenic 35.0%
AAGCAACAGAATGTGTTCTT+AGG + chr8_2:3687387-3687406 Msa1228200:CDS 35.0%
CATAGTTGCATATGAAAGGT+TGG - chr8_2:3687448-3687467 None:intergenic 35.0%
! ACATGAAGATGTTGAGTTGT+TGG + chr8_2:3687496-3687515 Msa1228200:CDS 35.0%
GAAATCATTAGCCATGAACT+TGG + chr8_2:3687527-3687546 Msa1228200:CDS 35.0%
! GAATTGGCAACATTGGTTAA+TGG + chr8_2:3687560-3687579 Msa1228200:CDS 35.0%
TGGTCTTTGCAAATATGTTG+TGG + chr8_2:3687580-3687599 Msa1228200:CDS 35.0%
GTGGTGACATCAAATTGTTA+TGG + chr8_2:3687599-3687618 Msa1228200:CDS 35.0%
AGAGTTAGTTCAACTGTTGT+TGG + chr8_2:3687713-3687732 Msa1228200:CDS 35.0%
TTGATTATGTGCTGAATCTG+TGG - chr8_2:3686447-3686466 None:intergenic 35.0%
AACATAGGCTCAATGATTTC+TGG - chr8_2:3686474-3686493 None:intergenic 35.0%
CTTCATTCAACTTCAAGAGA+TGG - chr8_2:3686530-3686549 None:intergenic 35.0%
GGACCAATTGAGATAAACTT+TGG - chr8_2:3686564-3686583 None:intergenic 35.0%
TCTGGATTCTGACTATGAAA+AGG - chr8_2:3686585-3686604 None:intergenic 35.0%
TTTCCAAAAACTTCTCATCC+TGG - chr8_2:3686758-3686777 None:intergenic 35.0%
!! TTTTGGAGGAATTACACAGA+GGG + chr8_2:3686931-3686950 Msa1228200:CDS 35.0%
GAATGGTTGCAATAGCAATA+AGG + chr8_2:3686971-3686990 Msa1228200:CDS 35.0%
AAATCAGTGAAATGGTTGCA+AGG - chr8_2:3687098-3687117 None:intergenic 35.0%
! CCCTTAACTTGAATTTCTCT+TGG - chr8_2:3687140-3687159 None:intergenic 35.0%
GCTGTTCTTAGTACATATTC+TGG - chr8_2:3687197-3687216 None:intergenic 35.0%
CACAAAAACCAGCTCAAAAT+CGG - chr8_2:3687299-3687318 None:intergenic 35.0%
TAAGAACACATTCTGTTGCT+TGG - chr8_2:3687388-3687407 None:intergenic 35.0%
AAGCAACAGAATGTGTTCTT+AGG + chr8_2:3687387-3687406 Msa1228200:CDS 35.0%
CATAGTTGCATATGAAAGGT+TGG - chr8_2:3687448-3687467 None:intergenic 35.0%
! ACATGAAGATGTTGAGTTGT+TGG + chr8_2:3687496-3687515 Msa1228200:CDS 35.0%
GAAATCATTAGCCATGAACT+TGG + chr8_2:3687527-3687546 Msa1228200:CDS 35.0%
! GAATTGGCAACATTGGTTAA+TGG + chr8_2:3687560-3687579 Msa1228200:CDS 35.0%
TGGTCTTTGCAAATATGTTG+TGG + chr8_2:3687580-3687599 Msa1228200:CDS 35.0%
GTGGTGACATCAAATTGTTA+TGG + chr8_2:3687599-3687618 Msa1228200:CDS 35.0%
AGAGTTAGTTCAACTGTTGT+TGG + chr8_2:3687713-3687732 Msa1228200:CDS 35.0%
TTCAACTTCAAGAGATGGTG+AGG - chr8_2:3686525-3686544 None:intergenic 40.0%
TTCCAAACAAGAACTTTGCC+AGG + chr8_2:3686737-3686756 Msa1228200:CDS 40.0%
ATCCTGGCAAAGTTCTTGTT+TGG - chr8_2:3686742-3686761 None:intergenic 40.0%
! TTGCCAGGATGAGAAGTTTT+TGG + chr8_2:3686752-3686771 Msa1228200:CDS 40.0%
!!! GTTTTGGAGGAATTACACAG+AGG + chr8_2:3686930-3686949 Msa1228200:CDS 40.0%
TTTGGAGGAATTACACAGAG+GGG + chr8_2:3686932-3686951 Msa1228200:CDS 40.0%
!!! TTGAGCTGGTTTTTGTGCTT+AGG + chr8_2:3687302-3687321 Msa1228200:CDS 40.0%
CTTGGTCTACATTCAAATGC+GGG - chr8_2:3687370-3687389 None:intergenic 40.0%
GCTTGGTCTACATTCAAATG+CGG - chr8_2:3687371-3687390 None:intergenic 40.0%
ACTTGGAAGTCATGCAGAAT+TGG + chr8_2:3687544-3687563 Msa1228200:CDS 40.0%
TCATGCAGAATTGGCAACAT+TGG + chr8_2:3687553-3687572 Msa1228200:CDS 40.0%
ACAGTTGAACTAACTCTCCA+AGG - chr8_2:3687710-3687729 None:intergenic 40.0%
TTCAACTTCAAGAGATGGTG+AGG - chr8_2:3686525-3686544 None:intergenic 40.0%
TTCCAAACAAGAACTTTGCC+AGG + chr8_2:3686737-3686756 Msa1228200:CDS 40.0%
ATCCTGGCAAAGTTCTTGTT+TGG - chr8_2:3686742-3686761 None:intergenic 40.0%
! TTGCCAGGATGAGAAGTTTT+TGG + chr8_2:3686752-3686771 Msa1228200:CDS 40.0%
!!! GTTTTGGAGGAATTACACAG+AGG + chr8_2:3686930-3686949 Msa1228200:CDS 40.0%
TTTGGAGGAATTACACAGAG+GGG + chr8_2:3686932-3686951 Msa1228200:CDS 40.0%
!!! TTGAGCTGGTTTTTGTGCTT+AGG + chr8_2:3687302-3687321 Msa1228200:CDS 40.0%
CTTGGTCTACATTCAAATGC+GGG - chr8_2:3687370-3687389 None:intergenic 40.0%
GCTTGGTCTACATTCAAATG+CGG - chr8_2:3687371-3687390 None:intergenic 40.0%
ACTTGGAAGTCATGCAGAAT+TGG + chr8_2:3687544-3687563 Msa1228200:CDS 40.0%
TCATGCAGAATTGGCAACAT+TGG + chr8_2:3687553-3687572 Msa1228200:CDS 40.0%
ACAGTTGAACTAACTCTCCA+AGG - chr8_2:3687710-3687729 None:intergenic 40.0%
GCTACAAAGTTGAGTGAAGC+AGG + chr8_2:3687215-3687234 Msa1228200:CDS 45.0%
GACATTGTTCGAACGCGATT+AGG - chr8_2:3687415-3687434 None:intergenic 45.0%
CTGCATGACTTCCAAGTTCA+TGG - chr8_2:3687541-3687560 None:intergenic 45.0%
! CGGTGTATTTTCGTGATCCT+TGG + chr8_2:3687690-3687709 Msa1228200:CDS 45.0%
GCTACAAAGTTGAGTGAAGC+AGG + chr8_2:3687215-3687234 Msa1228200:CDS 45.0%
GACATTGTTCGAACGCGATT+AGG - chr8_2:3687415-3687434 None:intergenic 45.0%
CTGCATGACTTCCAAGTTCA+TGG - chr8_2:3687541-3687560 None:intergenic 45.0%
! CGGTGTATTTTCGTGATCCT+TGG + chr8_2:3687690-3687709 Msa1228200:CDS 45.0%
!!! AGAAGACGCCGATTTTGAGC+TGG + chr8_2:3687288-3687307 Msa1228200:CDS 50.0%
!!! AGAAGACGCCGATTTTGAGC+TGG + chr8_2:3687288-3687307 Msa1228200:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3686426 3687802 3686426 ID=Msa1228200;Name=Msa1228200
chr8_2 mRNA 3686426 3687802 3686426 ID=Msa1228200-mRNA-1;Parent=Msa1228200;Name=Msa1228200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|458
chr8_2 exon 3686426 3687802 3686426 ID=Msa1228200-mRNA-1:exon:1128;Parent=Msa1228200-mRNA-1
chr8_2 CDS 3686426 3687802 3686426 ID=Msa1228200-mRNA-1:cds;Parent=Msa1228200-mRNA-1
Gene Sequence

>Msa1228200

ATGGGTTCTGAAACTATACCACAGATTCAGCACATAATCAACATTCCAGAAATCATTGAGCCTATGTTACATGAAAAATGTTGCATTTACAAGGTTCCTCACCATCTCTTGAAGTTGAATGAAGATGCTTTTACACCAAAGTTTATCTCAATTGGTCCTTTTCATAGTCAGAATCCAGAACTTAATCAAGAGAAACAGAAACAAAGGTACTTTCATGCTTTTTGGAAACGTTTATCAAATAAACAAACTTTAGCTTTGGTACAATATAAAGCTTTTCTTGAAGAAAACACAGAAAATATTGCTAATTGTTATTCCAAACAAGAACTTTGCCAGGATGAGAAGTTTTTGGAAATGATTTTGTTAGACTCAGTTTTCATAATGGAGTTGTTTTTGAGAAAAGTTAATGAATCTGAACAGAAAAATGATTTCATGTTTACAACATCATGGATTTACAAAATGACACAAAGGGATTTGTTGCTGCTTGAAAATCAAATTCCTATGTTTGTTTTGGAGGAATTACACAGAGGGGTGTTATTAGCTGAAAAGAATGGTTGCAATAGCAATAAGGAAAATTCTGCTAGTTTTATTGATCTTGCTTTTAACTACTTTGAAGATTATTATCCTCAAAAGTTAACAAGTCAAAAATTGGAGTTGACTCAAAATTGCAAACCTTGCAACCATTTCACTGATTTGATTAGATATACTTATCTTCCAAGAGAAATTCAAGTTAAGGGTGTGAATCCATCAAAAAGTTTCACACCTTTTAGACCAGAATATGTACTAAGAACAGCTACAAAGTTGAGTGAAGCAGGTATTAGTTTCGAGAAAGTTCAAGGTAAAAGCTATTGTGACTTAAAGTTTAAGAAGACGCCGATTTTGAGCTGGTTTTTGTGCTTAGGTTGTGTACCATGTTTTAAATTTGTCGAATCTAAGTTACAAATCCCGCATTTGAATGTAGACCAAGCAACAGAATGTGTTCTTAGGAACCTAATCGCGTTCGAACAATGTCACTATTCAGACCAACCTTTCATATGCAACTATGTTTCTTTAATTGATTCTTTGATTCATACACATGAAGATGTTGAGTTGTTGGTTGACACAGAAATCATTAGCCATGAACTTGGAAGTCATGCAGAATTGGCAACATTGGTTAATGGTCTTTGCAAATATGTTGTGGTGACATCAAATTGTTATGGAAAGATCATTAAGGAAATGAATGAACATTATAATAACTGGTGGAAACATTATATGGGAATGTTAAGGTCGGTGTATTTTCGTGATCCTTGGAGAGTTAGTTCAACTGTTGTTGGAATTGCTATTTTCTTATTTGCTGCTGTCAATTTTCTTAGAGTTATTGGTGTATTTCGTTTGAAGTAG

Protein sequence

>Msa1228200

MGSETIPQIQHIINIPEIIEPMLHEKCCIYKVPHHLLKLNEDAFTPKFISIGPFHSQNPELNQEKQKQRYFHAFWKRLSNKQTLALVQYKAFLEENTENIANCYSKQELCQDEKFLEMILLDSVFIMELFLRKVNESEQKNDFMFTTSWIYKMTQRDLLLLENQIPMFVLEELHRGVLLAEKNGCNSNKENSASFIDLAFNYFEDYYPQKLTSQKLELTQNCKPCNHFTDLIRYTYLPREIQVKGVNPSKSFTPFRPEYVLRTATKLSEAGISFEKVQGKSYCDLKFKKTPILSWFLCLGCVPCFKFVESKLQIPHLNVDQATECVLRNLIAFEQCHYSDQPFICNYVSLIDSLIHTHEDVELLVDTEIISHELGSHAELATLVNGLCKYVVVTSNCYGKIIKEMNEHYNNWWKHYMGMLRSVYFRDPWRVSSTVVGIAIFLFAAVNFLRVIGVFRLK*