Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261970 | XP_024638217.1 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 9.39e-48 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261970 | A0A396IE92 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 4.49e-48 | 156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025690 | Msa1261970 | -0.826786 | 2.241229e-54 | -8.615850e-47 |
| Msa0053480 | Msa1261970 | -0.814239 | 1.704880e-51 | -8.615850e-47 |
| Msa0053650 | Msa1261970 | -0.838562 | 2.672140e-57 | -8.615850e-47 |
| Msa0055650 | Msa1261970 | -0.803227 | 3.854124e-49 | -8.615850e-47 |
| Msa0099270 | Msa1261970 | -0.815564 | 8.667066e-52 | -8.615850e-47 |
| Msa0604890 | Msa1261970 | -0.804250 | 2.363477e-49 | -8.615850e-47 |
| Msa0617560 | Msa1261970 | 0.811445 | 6.974913e-51 | -8.615850e-47 |
| Msa0621190 | Msa1261970 | 0.811439 | 6.996914e-51 | -8.615850e-47 |
| Msa0641020 | Msa1261970 | -0.819129 | 1.365901e-52 | -8.615850e-47 |
| Msa0641030 | Msa1261970 | -0.835906 | 1.277523e-56 | -8.615850e-47 |
| Msa0646180 | Msa1261970 | -0.813448 | 2.546852e-51 | -8.615850e-47 |
| Msa0679560 | Msa1261970 | -0.838437 | 2.877566e-57 | -8.615850e-47 |
| Msa0685880 | Msa1261970 | -0.802964 | 4.368873e-49 | -8.615850e-47 |
| Msa0691760 | Msa1261970 | 0.803366 | 3.607763e-49 | -8.615850e-47 |
| Msa0812330 | Msa1261970 | 0.843256 | 1.567429e-58 | -8.615850e-47 |
| Msa0195030 | Msa1261970 | 0.823797 | 1.141490e-53 | -8.615850e-47 |
| Msa0225370 | Msa1261970 | -0.823130 | 1.634848e-53 | -8.615850e-47 |
| Msa0237180 | Msa1261970 | 0.812651 | 3.808939e-51 | -8.615850e-47 |
| Msa1225040 | Msa1261970 | 0.972923 | 1.451606e-135 | -8.615850e-47 |
| Msa1261970 | Msa1307730 | 0.821469 | 3.970579e-53 | -8.615850e-47 |
| Msa1261970 | Msa1359880 | -0.810924 | 9.051095e-51 | -8.615850e-47 |
| Msa1261970 | Msa1445250 | -0.826542 | 2.561992e-54 | -8.615850e-47 |
| Msa1261970 | Msa1448840 | -0.801170 | 1.021865e-48 | -8.615850e-47 |
| Msa0371490 | Msa1261970 | 0.802886 | 4.534238e-49 | -8.615850e-47 |
| Msa0378620 | Msa1261970 | -0.809420 | 1.908851e-50 | -8.615850e-47 |
| Msa0382670 | Msa1261970 | 0.803530 | 3.336605e-49 | -8.615850e-47 |
| Msa0389800 | Msa1261970 | 0.824590 | 7.431660e-54 | -8.615850e-47 |
| Msa0416470 | Msa1261970 | 0.828754 | 7.540004e-55 | -8.615850e-47 |
| Msa0432260 | Msa1261970 | -0.807312 | 5.375561e-50 | -8.615850e-47 |
| Msa0449220 | Msa1261970 | -0.815621 | 8.418814e-52 | -8.615850e-47 |
| Msa0468140 | Msa1261970 | 0.806307 | 8.766457e-50 | -8.615850e-47 |
| Msa0982260 | Msa1261970 | 0.826463 | 2.675511e-54 | -8.615850e-47 |
| Msa0985040 | Msa1261970 | -0.813263 | 2.796698e-51 | -8.615850e-47 |
| Msa1081530 | Msa1261970 | -0.801338 | 9.438541e-49 | -8.615850e-47 |
| Msa0266380 | Msa1261970 | -0.818857 | 1.574987e-52 | -8.615850e-47 |
| Msa0274940 | Msa1261970 | 0.822472 | 2.326120e-53 | -8.615850e-47 |
| Msa0279490 | Msa1261970 | -0.804323 | 2.282191e-49 | -8.615850e-47 |
| Msa0315660 | Msa1261970 | 0.826027 | 3.397171e-54 | -8.615850e-47 |
| Msa0341860 | Msa1261970 | -0.805472 | 1.312981e-49 | -8.615850e-47 |
| Msa1124980 | Msa1261970 | 0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa1129010 | Msa1261970 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa1182400 | Msa1261970 | -0.801716 | 7.895948e-49 | -8.615850e-47 |
| Msa0521100 | Msa1261970 | -0.819048 | 1.425297e-52 | -8.615850e-47 |
| Msa0544930 | Msa1261970 | -0.823899 | 1.080331e-53 | -8.615850e-47 |
| Msa0575540 | Msa1261970 | -0.800982 | 1.116426e-48 | -8.615850e-47 |
| Msa0881240 | Msa1261970 | 0.962554 | 5.137761e-121 | -8.615850e-47 |
| Msa0930090 | Msa1261970 | -0.805461 | 1.319977e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261970 | MtrunA17_Chr4g0063171 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 8.64e-52 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1261970 | AT1G68680.1 | 70.667 | 75 | 20 | 1 | 4 | 78 | 3 | 75 | 5.27e-31 | 103 |
Find 42 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAAATTTCTCTATTTA+AGG | 0.064089 | 8_2:+64472120 | None:intergenic |
| AGTAGAATAATTATGGAATT+TGG | 0.210855 | 8_2:-64472007 | Msa1261970:three_prime_UTR |
| CGAGTAAAATATGGTCTAAT+TGG | 0.226747 | 8_2:-64471944 | Msa1261970:three_prime_UTR |
| ATTCTGGTCAATTAAGAAAA+AGG | 0.227301 | 8_2:-64475391 | None:intergenic |
| ACTTGTGAATAATTTATATA+TGG | 0.326133 | 8_2:-64471832 | Msa1261970:three_prime_UTR |
| GACTAACTTAGAGGGAGAAC+AGG | 0.369848 | 8_2:+64475101 | None:intergenic |
| TTTCAGTTCGTTTGGGGTTG+CGG | 0.370415 | 8_2:-64475004 | Msa1261970:intron |
| TACAATTCTCGAATAGTATA+TGG | 0.376764 | 8_2:+64472054 | None:intergenic |
| GAGCATATATGAGAGGAAAA+AGG | 0.391598 | 8_2:+64475123 | None:intergenic |
| GTTATAATGCGAGTAAAATA+TGG | 0.396809 | 8_2:-64471953 | Msa1261970:three_prime_UTR |
| TTGTTCTTCCTTCTTGCAAC+GGG | 0.436059 | 8_2:+64475164 | None:intergenic |
| GAGCAAATAAGATTTATATC+AGG | 0.443330 | 8_2:+64471875 | None:intergenic |
| AACAAACGATCTCTCAAAAC+AGG | 0.448254 | 8_2:+64474975 | None:intergenic |
| TTGTTTACAGCTGTCTTGGC+TGG | 0.452873 | 8_2:-64474957 | Msa1261970:CDS |
| TCGAGAGTTGTTGAAACAGC+AGG | 0.457017 | 8_2:+64475321 | None:intergenic |
| GATATAAATCTTATTTGCTC+TGG | 0.460790 | 8_2:-64471872 | Msa1261970:three_prime_UTR |
| TCGTTTGTTTACAGCTGTCT+TGG | 0.473619 | 8_2:-64474961 | Msa1261970:CDS |
| TCTCTATTTAAGGTGTTGCC+AGG | 0.473641 | 8_2:+64472130 | None:intergenic |
| TAATTTATATATGGTCTAAG+TGG | 0.475890 | 8_2:-64471823 | None:intergenic |
| ATTGTTCTTCCTTCTTGCAA+CGG | 0.484891 | 8_2:+64475163 | None:intergenic |
| TGATTATACAGAGCATGTAT+TGG | 0.486189 | 8_2:-64472229 | Msa1261970:three_prime_UTR |
| GTGTTTGCTGCTCAAAATCC+TGG | 0.487476 | 8_2:-64472148 | Msa1261970:three_prime_UTR |
| CGCATTATAACACTTGGAGT+TGG | 0.491659 | 8_2:+64471965 | None:intergenic |
| ATCGTTTACATCACAACCTC+AGG | 0.501379 | 8_2:-64472193 | Msa1261970:three_prime_UTR |
| AGAAAACGTTACATGTTAGC+AGG | 0.515067 | 8_2:+64475260 | None:intergenic |
| AGAATAATTATGGAATTTGG+AGG | 0.519417 | 8_2:-64472004 | Msa1261970:three_prime_UTR |
| ACAAGTCAAATAATTTATTG+AGG | 0.525568 | 8_2:+64472169 | None:intergenic |
| ATCAGTGTGATTCATTGTAT+CGG | 0.527719 | 8_2:-64475366 | Msa1261970:five_prime_UTR |
| TTTACTCGCATTATAACACT+TGG | 0.527900 | 8_2:+64471959 | None:intergenic |
| ATTATAACACTTGGAGTTGG+AGG | 0.531140 | 8_2:+64471968 | None:intergenic |
| GTTTCAACAACTCTCGATCT+CGG | 0.543448 | 8_2:-64475315 | Msa1261970:five_prime_UTR |
| GGTTGTGATGTAAACGATGC+TGG | 0.556905 | 8_2:+64472198 | None:intergenic |
| AGTGGAGTGACTAACTTAGA+GGG | 0.580435 | 8_2:+64475093 | None:intergenic |
| TTTCAATTTCAGTTCGTTTG+GGG | 0.590044 | 8_2:-64475010 | Msa1261970:intron |
| AATAATTTATTGAGGACCTG+AGG | 0.609349 | 8_2:+64472177 | None:intergenic |
| ACAGAGAACCCGTTGCAAGA+AGG | 0.610499 | 8_2:-64475172 | Msa1261970:intron |
| GATCTCGGTCAATTCCGCCA+TGG | 0.632156 | 8_2:-64475300 | Msa1261970:exon |
| CGAGAGTTGTTGAAACAGCA+GGG | 0.636152 | 8_2:+64475322 | None:intergenic |
| AGAACAGGAGCATATATGAG+AGG | 0.644560 | 8_2:+64475116 | None:intergenic |
| GAACGACGTCGGCGCCATGG+CGG | 0.678846 | 8_2:+64475286 | None:intergenic |
| GTTGCAAGAAGGAAGAACAA+TGG | 0.706424 | 8_2:-64475161 | Msa1261970:CDS |
| TTAGCAGGATCGAACGACGT+CGG | 0.711088 | 8_2:+64475275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAATAAATAATATAA+TGG | + | chr8_2:64474485-64474504 | None:intergenic | 0.0% |
| !! | ATTATATTATTTATTTAATT+AGG | - | chr8_2:64474484-64474503 | Msa1261970:intron | 0.0% |
| !! | TAGAATAAATTAAAGAAAAA+AGG | + | chr8_2:64472312-64472331 | None:intergenic | 10.0% |
| !!! | ACTGTATTTATCTTTTTTTT+AGG | + | chr8_2:64473163-64473182 | None:intergenic | 15.0% |
| !!! | AGTCAAATTGTTTTTATATA+AGG | - | chr8_2:64473180-64473199 | Msa1261970:intron | 15.0% |
| !!! | GTCATTTTTTTTTTTTTTTG+AGG | + | chr8_2:64474264-64474283 | None:intergenic | 15.0% |
| !! | TGATAAAATTTCTCTATTTA+AGG | + | chr8_2:64475095-64475114 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCCCAATTTTT+TGG | - | chr8_2:64475122-64475141 | Msa1261970:CDS | 15.0% |
| !!! | TTTTTTTTTCCCAATTTTTT+GGG | - | chr8_2:64475123-64475142 | Msa1261970:CDS | 15.0% |
| !! | ACTTGTGAATAATTTATATA+TGG | - | chr8_2:64475380-64475399 | Msa1261970:five_prime_UTR | 15.0% |
| !!! | TTTGAACATTTAGAATAGTT+TGG | - | chr8_2:64472513-64472532 | Msa1261970:intron | 20.0% |
| !!! | TTGAACATTTAGAATAGTTT+GGG | - | chr8_2:64472514-64472533 | Msa1261970:intron | 20.0% |
| !! | TGGTATATGATAGAAAATTA+TGG | - | chr8_2:64472938-64472957 | Msa1261970:intron | 20.0% |
| !!! | ACTATTTTCATAAGTTATCT+TGG | - | chr8_2:64473208-64473227 | Msa1261970:intron | 20.0% |
| !! | TTAATTGATATCAGAATCAA+TGG | + | chr8_2:64474309-64474328 | None:intergenic | 20.0% |
| !! | TAGAATGAAATTACATTGAT+TGG | - | chr8_2:64474792-64474811 | Msa1261970:intron | 20.0% |
| !! | ACAAGTCAAATAATTTATTG+AGG | + | chr8_2:64475046-64475065 | None:intergenic | 20.0% |
| !! | AATAATCTTCCCAAAAAATT+GGG | + | chr8_2:64475135-64475154 | None:intergenic | 20.0% |
| !!! | AGCTTTTAGTAGAATAATTA+TGG | - | chr8_2:64475198-64475217 | Msa1261970:intron | 20.0% |
| !! | AGTAGAATAATTATGGAATT+TGG | - | chr8_2:64475205-64475224 | Msa1261970:intron | 20.0% |
| ! | ATTCATTGTATCGGAAAAAA+GGG | - | chr8_2:64471855-64471874 | Msa1261970:three_prime_UTR | 25.0% |
| ! | AGCAGTTAAAGAATTGATTA+AGG | + | chr8_2:64472015-64472034 | None:intergenic | 25.0% |
| ! | AATGAATTGAATGAAGAAAG+TGG | + | chr8_2:64472140-64472159 | None:intergenic | 25.0% |
| !! | ATTTTCAATTTCAGTTCGTT+TGG | - | chr8_2:64472200-64472219 | Msa1261970:three_prime_UTR | 25.0% |
| !! | TTTTCAATTTCAGTTCGTTT+GGG | - | chr8_2:64472201-64472220 | Msa1261970:three_prime_UTR | 25.0% |
| !! | TGAACATTTAGAATAGTTTG+GGG | - | chr8_2:64472515-64472534 | Msa1261970:intron | 25.0% |
| ! | TGATTGTCTCAAATTATTGT+CGG | + | chr8_2:64472736-64472755 | None:intergenic | 25.0% |
| ! | TTTCTATCATATACCATGTT+TGG | + | chr8_2:64472934-64472953 | None:intergenic | 25.0% |
| ! | AACATTTAGACTATCAAACA+GGG | + | chr8_2:64473048-64473067 | None:intergenic | 25.0% |
| ! | TACAAATTGTTGTCAAATAG+CGG | + | chr8_2:64473657-64473676 | None:intergenic | 25.0% |
| ! | CATTATCATTAGTCCAAATT+TGG | - | chr8_2:64474124-64474143 | Msa1261970:intron | 25.0% |
| !!! | ACGTCAAAATTATTTTGTGA+AGG | + | chr8_2:64474202-64474221 | None:intergenic | 25.0% |
| !! | CAATTAATCTTCATTCGTTT+TGG | - | chr8_2:64474322-64474341 | Msa1261970:intron | 25.0% |
| ! | TTGAGTTATGACAGTAAATA+AGG | - | chr8_2:64474575-64474594 | Msa1261970:intron | 25.0% |
| ! | AATACAGCAACACTAATAAT+AGG | - | chr8_2:64474674-64474693 | Msa1261970:intron | 25.0% |
| ! | ATACAGCAACACTAATAATA+GGG | - | chr8_2:64474675-64474694 | Msa1261970:intron | 25.0% |
| ! | TCTAGTTATACAATTCAGAA+AGG | + | chr8_2:64474776-64474795 | None:intergenic | 25.0% |
| !! | ATGAAATTACATTGATTGGA+TGG | - | chr8_2:64474796-64474815 | Msa1261970:intron | 25.0% |
| ! | GGATGGTAACAAAAAATTTA+CGG | - | chr8_2:64474813-64474832 | Msa1261970:intron | 25.0% |
| ! | CAATAATCTTCCCAAAAAAT+TGG | + | chr8_2:64475136-64475155 | None:intergenic | 25.0% |
| ! | TACAATTCTCGAATAGTATA+TGG | + | chr8_2:64475161-64475180 | None:intergenic | 25.0% |
| ! | AGAATAATTATGGAATTTGG+AGG | - | chr8_2:64475208-64475227 | Msa1261970:intron | 25.0% |
| ! | GTTATAATGCGAGTAAAATA+TGG | - | chr8_2:64475259-64475278 | Msa1261970:intron | 25.0% |
| ! | GAGCAAATAAGATTTATATC+AGG | + | chr8_2:64475316-64475335 | None:intergenic | 25.0% |
| !! | GATATAAATCTTATTTGCTC+TGG | - | chr8_2:64475316-64475335 | Msa1261970:five_prime_UTR | 25.0% |
| ATCAGTGTGATTCATTGTAT+CGG | - | chr8_2:64471846-64471865 | Msa1261970:three_prime_UTR | 30.0% | |
| GATTCATTGTATCGGAAAAA+AGG | - | chr8_2:64471854-64471873 | Msa1261970:three_prime_UTR | 30.0% | |
| TTTCAATTTCAGTTCGTTTG+GGG | - | chr8_2:64472202-64472221 | Msa1261970:three_prime_UTR | 30.0% | |
| ! | CTTTATGCGTGACTTAATTT+TGG | - | chr8_2:64472415-64472434 | Msa1261970:intron | 30.0% |
| ! | CTCATTTAGAGTTAAGAAAC+CGG | - | chr8_2:64472457-64472476 | Msa1261970:intron | 30.0% |
| ! | TTTTGTGTAGGATTGCAAAA+TGG | - | chr8_2:64472489-64472508 | Msa1261970:intron | 30.0% |
| TTTGTGTAGGATTGCAAAAT+GGG | - | chr8_2:64472490-64472509 | Msa1261970:intron | 30.0% | |
| ! | GAACATTTAGAATAGTTTGG+GGG | - | chr8_2:64472516-64472535 | Msa1261970:intron | 30.0% |
| TACAACATCTTTCCTACTAT+AGG | + | chr8_2:64472621-64472640 | None:intergenic | 30.0% | |
| AAGATGTTGTAACTAAGCTT+AGG | - | chr8_2:64472630-64472649 | Msa1261970:intron | 30.0% | |
| ! | TAATGAGTTGAATCCAAACA+TGG | - | chr8_2:64472918-64472937 | Msa1261970:intron | 30.0% |
| CAACATTTAGACTATCAAAC+AGG | + | chr8_2:64473049-64473068 | None:intergenic | 30.0% | |
| ATAGTCTAAATGTTGTCAAG+TGG | - | chr8_2:64473054-64473073 | Msa1261970:intron | 30.0% | |
| TATGCTATAAGGGCTTAATT+AGG | + | chr8_2:64473084-64473103 | None:intergenic | 30.0% | |
| AATTAAGCCCTTATAGCATA+AGG | - | chr8_2:64473084-64473103 | Msa1261970:intron | 30.0% | |
| ATTAAGCCCTTATAGCATAA+GGG | - | chr8_2:64473085-64473104 | Msa1261970:intron | 30.0% | |
| AAGTTATCTTGGAGAGTTTA+TGG | - | chr8_2:64473219-64473238 | Msa1261970:intron | 30.0% | |
| GCTTATGAACATATCAGTAA+CGG | - | chr8_2:64473258-64473277 | Msa1261970:intron | 30.0% | |
| ! | GCTAATTTGAAATTATCTGC+TGG | + | chr8_2:64473326-64473345 | None:intergenic | 30.0% |
| TCAAATTAGCCAATTCAAAC+AGG | - | chr8_2:64473336-64473355 | Msa1261970:intron | 30.0% | |
| AAATGCAAAAGATTAGGGTT+AGG | + | chr8_2:64473362-64473381 | None:intergenic | 30.0% | |
| ! | AACCCTAATCTTTTGCATTT+TGG | - | chr8_2:64473362-64473381 | Msa1261970:intron | 30.0% |
| ! | ACCCTAATCTTTTGCATTTT+GGG | - | chr8_2:64473363-64473382 | Msa1261970:intron | 30.0% |
| TCCCAAAATGCAAAAGATTA+GGG | + | chr8_2:64473367-64473386 | None:intergenic | 30.0% | |
| ATCCCAAAATGCAAAAGATT+AGG | + | chr8_2:64473368-64473387 | None:intergenic | 30.0% | |
| !! | ACTTGTTAACTTTTGCTTTG+TGG | - | chr8_2:64473471-64473490 | Msa1261970:intron | 30.0% |
| ! | CTTGTTAACTTTTGCTTTGT+GGG | - | chr8_2:64473472-64473491 | Msa1261970:intron | 30.0% |
| TTGTATTAAATAGCGTTTCG+TGG | - | chr8_2:64473672-64473691 | Msa1261970:intron | 30.0% | |
| AGATGTCTCGGAAAAATTAT+GGG | + | chr8_2:64473806-64473825 | None:intergenic | 30.0% | |
| TAGATGTCTCGGAAAAATTA+TGG | + | chr8_2:64473807-64473826 | None:intergenic | 30.0% | |
| AAACAGTCATTTAGATGTCT+CGG | + | chr8_2:64473818-64473837 | None:intergenic | 30.0% | |
| ! | AAAAAAAGTGCAAACTGAAC+AGG | - | chr8_2:64474036-64474055 | Msa1261970:intron | 30.0% |
| ! | GAATTTTTCTGATGCTAAAC+TGG | - | chr8_2:64474082-64474101 | Msa1261970:intron | 30.0% |
| ATCATTAGTCCAAATTTGGT+TGG | - | chr8_2:64474128-64474147 | Msa1261970:intron | 30.0% | |
| TCAGAATAGAATCACAACTT+AGG | - | chr8_2:64474160-64474179 | Msa1261970:intron | 30.0% | |
| !! | TTATTTTGTGAAGGAATCCA+AGG | + | chr8_2:64474193-64474212 | None:intergenic | 30.0% |
| ! | TTAGACTTTAGAGAAAGTAG+TGG | - | chr8_2:64474360-64474379 | Msa1261970:intron | 30.0% |
| TTCATTATAAGATGCCAGTT+TGG | - | chr8_2:64474415-64474434 | Msa1261970:intron | 30.0% | |
| !! | TATAATGGCATTGACTTCAA+AGG | + | chr8_2:64474470-64474489 | None:intergenic | 30.0% |
| CAAGCCAAAATGATACTAAA+AGG | - | chr8_2:64474604-64474623 | Msa1261970:intron | 30.0% | |
| ! | AGCACCTTTTAGTATCATTT+TGG | + | chr8_2:64474611-64474630 | None:intergenic | 30.0% |
| ! | TGCTCGTTCTTTGTTAATTT+TGG | - | chr8_2:64474627-64474646 | Msa1261970:intron | 30.0% |
| ACTAATAATAGGGAGAAGTA+TGG | - | chr8_2:64474685-64474704 | Msa1261970:intron | 30.0% | |
| ! | CTAATAATAGGGAGAAGTAT+GGG | - | chr8_2:64474686-64474705 | Msa1261970:intron | 30.0% |
| TACAATTCAGAAAGGAAACA+TGG | + | chr8_2:64474768-64474787 | None:intergenic | 30.0% | |
| TGGTCAATTGCAAATTTACA+AGG | + | chr8_2:64474858-64474877 | None:intergenic | 30.0% | |
| TTGACTAAAAAAACAGTCGA+TGG | + | chr8_2:64474892-64474911 | None:intergenic | 30.0% | |
| TGATCTGGATATTGTCATTA+AGG | + | chr8_2:64474939-64474958 | None:intergenic | 30.0% | |
| TGATTATACAGAGCATGTAT+TGG | - | chr8_2:64474983-64475002 | Msa1261970:CDS | 30.0% | |
| AATAATTTATTGAGGACCTG+AGG | + | chr8_2:64475038-64475057 | None:intergenic | 30.0% | |
| TTTACTCGCATTATAACACT+TGG | + | chr8_2:64475256-64475275 | None:intergenic | 30.0% | |
| CGAGTAAAATATGGTCTAAT+TGG | - | chr8_2:64475268-64475287 | Msa1261970:intron | 30.0% | |
| AGAAAACGTTACATGTTAGC+AGG | + | chr8_2:64471955-64471974 | None:intergenic | 35.0% | |
| ATTGTTCTTCCTTCTTGCAA+CGG | + | chr8_2:64472052-64472071 | None:intergenic | 35.0% | |
| GAGCATATATGAGAGGAAAA+AGG | + | chr8_2:64472092-64472111 | None:intergenic | 35.0% | |
| AACAAACGATCTCTCAAAAC+AGG | + | chr8_2:64472240-64472259 | None:intergenic | 35.0% | |
| TTAGTATTCTGTGCAACTTG+TGG | - | chr8_2:64472388-64472407 | Msa1261970:intron | 35.0% | |
| CTACACAAAACACTAAACAC+CGG | + | chr8_2:64472479-64472498 | None:intergenic | 35.0% | |
| ATGTTGTAACTAAGCTTAGG+TGG | - | chr8_2:64472633-64472652 | Msa1261970:intron | 35.0% | |
| TAACTAAGCTTAGGTGGTTT+GGG | - | chr8_2:64472639-64472658 | Msa1261970:intron | 35.0% | |
| GTAGTTATATTTGTCCGTGT+CGG | - | chr8_2:64472767-64472786 | Msa1261970:intron | 35.0% | |
| GATAAGCCCTTATGCTATAA+GGG | + | chr8_2:64473094-64473113 | None:intergenic | 35.0% | |
| TGATAAGCCCTTATGCTATA+AGG | + | chr8_2:64473095-64473114 | None:intergenic | 35.0% | |
| AAGACTGCTTAGACAGTTTA+TGG | + | chr8_2:64473287-64473306 | None:intergenic | 35.0% | |
| CAGAGAAGCAATTCAAACTT+TGG | + | chr8_2:64473425-64473444 | None:intergenic | 35.0% | |
| AAGTTTGAATTGCTTCTCTG+AGG | - | chr8_2:64473425-64473444 | Msa1261970:intron | 35.0% | |
| GAAAGGGGAAATAACATGAT+AGG | - | chr8_2:64473513-64473532 | Msa1261970:intron | 35.0% | |
| AGTCTATGTATCCTTGATCT+CGG | - | chr8_2:64473574-64473593 | Msa1261970:intron | 35.0% | |
| TCTCGGAAAAATTATGGGAA+GGG | + | chr8_2:64473801-64473820 | None:intergenic | 35.0% | |
| GAGACATCTAAATGACTGTT+TGG | - | chr8_2:64473817-64473836 | Msa1261970:intron | 35.0% | |
| CTTAAACTTTCAGTGTGGTT+AGG | - | chr8_2:64474060-64474079 | Msa1261970:intron | 35.0% | |
| ! | TAGTCCAAATTTGGTTGGTA+AGG | - | chr8_2:64474133-64474152 | Msa1261970:intron | 35.0% |
| !! | AGTCCAAATTTGGTTGGTAA+GGG | - | chr8_2:64474134-64474153 | Msa1261970:intron | 35.0% |
| ! | ACTTTAGAGAAAGTAGTGGA+AGG | - | chr8_2:64474364-64474383 | Msa1261970:intron | 35.0% |
| ! | TGGAAGGTTTAAGATCAGTT+AGG | - | chr8_2:64474380-64474399 | Msa1261970:intron | 35.0% |
| ! | GGAAGGTTTAAGATCAGTTA+GGG | - | chr8_2:64474381-64474400 | Msa1261970:intron | 35.0% |
| ACTCAATTAGTGTCAGTTTG+TGG | + | chr8_2:64474561-64474580 | None:intergenic | 35.0% | |
| GACAAGACAAACATGTAAGA+GGG | + | chr8_2:64474729-64474748 | None:intergenic | 35.0% | |
| AGACAAGACAAACATGTAAG+AGG | + | chr8_2:64474730-64474749 | None:intergenic | 35.0% | |
| !! | AGTCGATGGATTGTTGAATT+TGG | + | chr8_2:64474878-64474897 | None:intergenic | 35.0% |
| AGCATCATACAAATCTGATC+TGG | + | chr8_2:64474954-64474973 | None:intergenic | 35.0% | |
| ATTATAACACTTGGAGTTGG+AGG | + | chr8_2:64475247-64475266 | None:intergenic | 35.0% | |
| GTTTCAACAACTCTCGATCT+CGG | - | chr8_2:64471897-64471916 | Msa1261970:three_prime_UTR | 40.0% | |
| TTGTTCTTCCTTCTTGCAAC+GGG | + | chr8_2:64472051-64472070 | None:intergenic | 40.0% | |
| GTTGCAAGAAGGAAGAACAA+TGG | - | chr8_2:64472051-64472070 | Msa1261970:three_prime_UTR | 40.0% | |
| AGAGGAAAAAGGAACTTGAG+AGG | + | chr8_2:64472081-64472100 | None:intergenic | 40.0% | |
| ! | AGAACAGGAGCATATATGAG+AGG | + | chr8_2:64472099-64472118 | None:intergenic | 40.0% |
| AGTGGAGTGACTAACTTAGA+GGG | + | chr8_2:64472122-64472141 | None:intergenic | 40.0% | |
| AAGTGGAGTGACTAACTTAG+AGG | + | chr8_2:64472123-64472142 | None:intergenic | 40.0% | |
| TCGTTTGTTTACAGCTGTCT+TGG | - | chr8_2:64472251-64472270 | Msa1261970:CDS | 40.0% | |
| ! | CGGTGTTTAGTGTTTTGTGT+AGG | - | chr8_2:64472477-64472496 | Msa1261970:intron | 40.0% |
| GTAACTAAGCTTAGGTGGTT+TGG | - | chr8_2:64472638-64472657 | Msa1261970:intron | 40.0% | |
| AGTAAGGAGGGTAGATCATA+TGG | - | chr8_2:64472691-64472710 | Msa1261970:intron | 40.0% | |
| TATGAAGCACAAACTCTCCT+TGG | + | chr8_2:64472829-64472848 | None:intergenic | 40.0% | |
| AAGGAGAGTTTGTGCTTCAT+AGG | - | chr8_2:64472828-64472847 | Msa1261970:intron | 40.0% | |
| AGAGTTTGTGCTTCATAGGA+TGG | - | chr8_2:64472832-64472851 | Msa1261970:intron | 40.0% | |
| TGTCTAAGCAGTCTTACAAG+TGG | - | chr8_2:64473292-64473311 | Msa1261970:intron | 40.0% | |
| TGTGTGAGTAGACAAGGAAA+GGG | - | chr8_2:64473497-64473516 | Msa1261970:intron | 40.0% | |
| TCCTTGATCTCGGAAAATAG+AGG | - | chr8_2:64473584-64473603 | Msa1261970:intron | 40.0% | |
| ! | ACCTCTATTTTCCGAGATCA+AGG | + | chr8_2:64473588-64473607 | None:intergenic | 40.0% |
| CATATGGCATTGTAGCATAG+CGG | + | chr8_2:64473622-64473641 | None:intergenic | 40.0% | |
| TTGTCAAATAGCGGCTATAC+TGG | + | chr8_2:64473648-64473667 | None:intergenic | 40.0% | |
| TGCGCTATAACGCAATAACA+CGG | + | chr8_2:64473724-64473743 | None:intergenic | 40.0% | |
| TGACAACACTAGTCAATGCT+AGG | - | chr8_2:64473758-64473777 | Msa1261970:intron | 40.0% | |
| CAATGCTAGGCAAGAAAAGT+AGG | - | chr8_2:64473771-64473790 | Msa1261970:intron | 40.0% | |
| GTCTCGGAAAAATTATGGGA+AGG | + | chr8_2:64473802-64473821 | None:intergenic | 40.0% | |
| CAGGTCTTAAACTTTCAGTG+TGG | - | chr8_2:64474055-64474074 | Msa1261970:intron | 40.0% | |
| !! | GTCCAAATTTGGTTGGTAAG+GGG | - | chr8_2:64474135-64474154 | Msa1261970:intron | 40.0% |
| !! | TCCAAATTTGGTTGGTAAGG+GGG | - | chr8_2:64474136-64474155 | Msa1261970:intron | 40.0% |
| ACAACTTAGGCATCTTTCCT+TGG | - | chr8_2:64474173-64474192 | Msa1261970:intron | 40.0% | |
| !! | TAAGATCAGTTAGGGTGTTG+AGG | - | chr8_2:64474389-64474408 | Msa1261970:intron | 40.0% |
| TAAGAGCAAGAATGCCAAAC+TGG | + | chr8_2:64474432-64474451 | None:intergenic | 40.0% | |
| !! | TGGCATTGACTTCAAAGGAA+TGG | + | chr8_2:64474465-64474484 | None:intergenic | 40.0% |
| ATCGTTTACATCACAACCTC+AGG | - | chr8_2:64475019-64475038 | Msa1261970:intron | 40.0% | |
| !! | TCTCTATTTAAGGTGTTGCC+AGG | + | chr8_2:64475085-64475104 | None:intergenic | 40.0% |
| CGCATTATAACACTTGGAGT+TGG | + | chr8_2:64475250-64475269 | None:intergenic | 40.0% | |
| CGAGAGTTGTTGAAACAGCA+GGG | + | chr8_2:64471893-64471912 | None:intergenic | 45.0% | |
| TCGAGAGTTGTTGAAACAGC+AGG | + | chr8_2:64471894-64471913 | None:intergenic | 45.0% | |
| GGAAAAAGGAACTTGAGAGG+AGG | + | chr8_2:64472078-64472097 | None:intergenic | 45.0% | |
| GACTAACTTAGAGGGAGAAC+AGG | + | chr8_2:64472114-64472133 | None:intergenic | 45.0% | |
| ! | TTTCAGTTCGTTTGGGGTTG+CGG | - | chr8_2:64472208-64472227 | Msa1261970:three_prime_UTR | 45.0% |
| TTGTTTACAGCTGTCTTGGC+TGG | - | chr8_2:64472255-64472274 | Msa1261970:CDS | 45.0% | |
| ! | TTGGCTGGTGCTTTTCTTCA+TGG | - | chr8_2:64472270-64472289 | Msa1261970:intron | 45.0% |
| AGAGAGAGAGAGAGAGAGTT+GGG | - | chr8_2:64472583-64472602 | Msa1261970:intron | 45.0% | |
| AAGGAGGGTAGATCATATGG+AGG | - | chr8_2:64472694-64472713 | Msa1261970:intron | 45.0% | |
| GCACAAACTCTCCTTGGATT+AGG | + | chr8_2:64472823-64472842 | None:intergenic | 45.0% | |
| GTTTGTGCTTCATAGGATGG+AGG | - | chr8_2:64472835-64472854 | Msa1261970:intron | 45.0% | |
| ACTAAGTGGGGTCAGTTACA+TGG | + | chr8_2:64472975-64472994 | None:intergenic | 45.0% | |
| ATGTAACTGACCCCACTTAG+TGG | - | chr8_2:64472974-64472993 | Msa1261970:intron | 45.0% | |
| TGTAACTGACCCCACTTAGT+GGG | - | chr8_2:64472975-64472994 | Msa1261970:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8_2:64472987-64473006 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8_2:64472988-64473007 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr8_2:64472989-64473008 | None:intergenic | 45.0% |
| AGGGTTAGGCCTGTTTGAAT+TGG | + | chr8_2:64473348-64473367 | None:intergenic | 45.0% | |
| !! | AATTGCTTCTCTGAGGCTAC+TGG | - | chr8_2:64473432-64473451 | Msa1261970:intron | 45.0% |
| CTGTGTGAGTAGACAAGGAA+AGG | - | chr8_2:64473496-64473515 | Msa1261970:intron | 45.0% | |
| GTGTGAGTAGACAAGGAAAG+GGG | - | chr8_2:64473498-64473517 | Msa1261970:intron | 45.0% | |
| CGCTATGCTACAATGCCATA+TGG | - | chr8_2:64473620-64473639 | Msa1261970:intron | 45.0% | |
| GCTATAACGCAATAACACGG+CGG | + | chr8_2:64473721-64473740 | None:intergenic | 45.0% | |
| GGTTGTGATGTAAACGATGC+TGG | + | chr8_2:64475017-64475036 | None:intergenic | 45.0% | |
| ! | GTGTTTGCTGCTCAAAATCC+TGG | - | chr8_2:64475064-64475083 | Msa1261970:intron | 45.0% |
| TTAGCAGGATCGAACGACGT+CGG | + | chr8_2:64471940-64471959 | None:intergenic | 50.0% | |
| ACAGAGAACCCGTTGCAAGA+AGG | - | chr8_2:64472040-64472059 | Msa1261970:three_prime_UTR | 50.0% | |
| ! | GCTGGTGCTTTTCTTCATGG+AGG | - | chr8_2:64472273-64472292 | Msa1261970:intron | 50.0% |
| GAGAGAGAGAGAGAGAGAGT+TGG | - | chr8_2:64472582-64472601 | Msa1261970:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | - | chr8_2:64472584-64472603 | Msa1261970:intron | 50.0% | |
| AGAGAGAGAGAGTTGGGGTT+GGG | - | chr8_2:64472589-64472608 | Msa1261970:intron | 50.0% | |
| GCATGTAGAGAGAAGACACG+TGG | - | chr8_2:64472661-64472680 | Msa1261970:intron | 50.0% | |
| GACACGTGGATTCTGCAGTA+AGG | - | chr8_2:64472675-64472694 | Msa1261970:intron | 50.0% | |
| ACGTGGATTCTGCAGTAAGG+AGG | - | chr8_2:64472678-64472697 | Msa1261970:intron | 50.0% | |
| CGTGGATTCTGCAGTAAGGA+GGG | - | chr8_2:64472679-64472698 | Msa1261970:intron | 50.0% | |
| GATTAGGCATGTGCCAGTGT+CGG | + | chr8_2:64472807-64472826 | None:intergenic | 50.0% | |
| ACTGGCACATGCCTAATCCA+AGG | - | chr8_2:64472809-64472828 | Msa1261970:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr8_2:64472981-64473000 | Msa1261970:intron | 50.0% | |
| !! | TCTCTGAGGCTACTGGAGAT+TGG | - | chr8_2:64473439-64473458 | Msa1261970:intron | 50.0% |
| TGGGTCTGTGTGAGTAGACA+AGG | - | chr8_2:64473491-64473510 | Msa1261970:intron | 50.0% | |
| GCCCCCTTACCAACCAAATT+TGG | + | chr8_2:64474140-64474159 | None:intergenic | 50.0% | |
| GATCTCGGTCAATTCCGCCA+TGG | - | chr8_2:64471912-64471931 | Msa1261970:three_prime_UTR | 55.0% | |
| GAGAGAGAGAGAGTTGGGGT+TGG | - | chr8_2:64472588-64472607 | Msa1261970:intron | 55.0% | |
| GAGAGAGAGAGTTGGGGTTG+GGG | - | chr8_2:64472590-64472609 | Msa1261970:intron | 55.0% | |
| GTTGGGGTGGCACCTATAGT+AGG | - | chr8_2:64472606-64472625 | Msa1261970:intron | 55.0% | |
| GCGGCTATACTGGCACCATA+TGG | + | chr8_2:64473638-64473657 | None:intergenic | 55.0% | |
| AGAGAGAGTTGGGGTTGGGG+TGG | - | chr8_2:64472593-64472612 | Msa1261970:intron | 60.0% | |
| ATCGAACGACGTCGGCGCCA+TGG | + | chr8_2:64471932-64471951 | None:intergenic | 65.0% | |
| ! | ACACGCGTCGGTGTCCGACA+CGG | + | chr8_2:64472784-64472803 | None:intergenic | 65.0% |
| ! | TGCCAGTGTCGGACACGCGT+CGG | + | chr8_2:64472796-64472815 | None:intergenic | 65.0% |
| GAACGACGTCGGCGCCATGG+CGG | + | chr8_2:64471929-64471948 | None:intergenic | 70.0% | |
| CACCGACGCGTGTCCGACAC+TGG | - | chr8_2:64472791-64472810 | Msa1261970:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 64471826 | 64475408 | 64471826 | ID=Msa1261970;Name=Msa1261970 |
| chr8_2 | mRNA | 64471826 | 64475408 | 64471826 | ID=Msa1261970-mRNA-1;Parent=Msa1261970;Name=Msa1261970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0.66|0.75|4|423|78 |
| chr8_2 | exon | 64471826 | 64472279 | 64471826 | ID=Msa1261970-mRNA-1:exon:20866;Parent=Msa1261970-mRNA-1 |
| chr8_2 | exon | 64474930 | 64475020 | 64474930 | ID=Msa1261970-mRNA-1:exon:20865;Parent=Msa1261970-mRNA-1 |
| chr8_2 | exon | 64475108 | 64475190 | 64475108 | ID=Msa1261970-mRNA-1:exon:20864;Parent=Msa1261970-mRNA-1 |
| chr8_2 | exon | 64475272 | 64475408 | 64475272 | ID=Msa1261970-mRNA-1:exon:20863;Parent=Msa1261970-mRNA-1 |
| chr8_2 | five_prime_UTR | 64475304 | 64475408 | 64475304 | ID=Msa1261970-mRNA-1:five_prime_utr;Parent=Msa1261970-mRNA-1 |
| chr8_2 | CDS | 64475272 | 64475303 | 64475272 | ID=Msa1261970-mRNA-1:cds;Parent=Msa1261970-mRNA-1 |
| chr8_2 | CDS | 64475108 | 64475190 | 64475108 | ID=Msa1261970-mRNA-1:cds;Parent=Msa1261970-mRNA-1 |
| chr8_2 | CDS | 64474930 | 64475020 | 64474930 | ID=Msa1261970-mRNA-1:cds;Parent=Msa1261970-mRNA-1 |
| chr8_2 | CDS | 64472249 | 64472279 | 64472249 | ID=Msa1261970-mRNA-1:cds;Parent=Msa1261970-mRNA-1 |
| chr8_2 | three_prime_UTR | 64471826 | 64472248 | 64471826 | ID=Msa1261970-mRNA-1:three_prime_utr;Parent=Msa1261970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
