Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225040 | XP_024638217.1 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 9.39e-48 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025690 | Msa1225040 | -0.832259 | 1.046729e-55 | -8.615850e-47 |
| Msa0029730 | Msa1225040 | 0.807657 | 4.541567e-50 | -8.615850e-47 |
| Msa0053480 | Msa1225040 | -0.805256 | 1.457069e-49 | -8.615850e-47 |
| Msa0053650 | Msa1225040 | -0.834835 | 2.382055e-56 | -8.615850e-47 |
| Msa0099090 | Msa1225040 | -0.801260 | 9.791269e-49 | -8.615850e-47 |
| Msa0099270 | Msa1225040 | -0.816632 | 5.003787e-52 | -8.615850e-47 |
| Msa0604890 | Msa1225040 | -0.809238 | 2.088140e-50 | -8.615850e-47 |
| Msa0621190 | Msa1225040 | 0.822447 | 2.357680e-53 | -8.615850e-47 |
| Msa0641020 | Msa1225040 | -0.801088 | 1.061949e-48 | -8.615850e-47 |
| Msa0641030 | Msa1225040 | -0.826466 | 2.672018e-54 | -8.615850e-47 |
| Msa0646180 | Msa1225040 | -0.820738 | 5.854103e-53 | -8.615850e-47 |
| Msa0659590 | Msa1225040 | -0.803671 | 3.119209e-49 | -8.615850e-47 |
| Msa0679560 | Msa1225040 | -0.827132 | 1.852457e-54 | -8.615850e-47 |
| Msa0812330 | Msa1225040 | 0.839011 | 2.044554e-57 | -8.615850e-47 |
| Msa0169710 | Msa1225040 | 0.813553 | 2.415393e-51 | -8.615850e-47 |
| Msa0195030 | Msa1225040 | 0.852128 | 5.654565e-61 | -8.615850e-47 |
| Msa0225370 | Msa1225040 | -0.816814 | 4.555425e-52 | -8.615850e-47 |
| Msa0237180 | Msa1225040 | 0.844019 | 9.796988e-59 | -8.615850e-47 |
| Msa1225040 | Msa1261970 | 0.972923 | 1.451606e-135 | -8.615850e-47 |
| Msa1225040 | Msa1307730 | 0.847267 | 1.288496e-59 | -8.615850e-47 |
| Msa1225040 | Msa1349870 | 0.811060 | 8.455702e-51 | -8.615850e-47 |
| Msa1225040 | Msa1359880 | -0.819033 | 1.436012e-52 | -8.615850e-47 |
| Msa1225040 | Msa1387750 | 0.803631 | 3.179852e-49 | -8.615850e-47 |
| Msa1225040 | Msa1395700 | -0.803216 | 3.875002e-49 | -8.615850e-47 |
| Msa1225040 | Msa1423050 | 0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa1225040 | Msa1445250 | -0.812011 | 5.255257e-51 | -8.615850e-47 |
| Msa1225040 | Msa1448840 | -0.815259 | 1.013145e-51 | -8.615850e-47 |
| Msa0371490 | Msa1225040 | 0.808522 | 2.971479e-50 | -8.615850e-47 |
| Msa0378620 | Msa1225040 | -0.822420 | 2.391272e-53 | -8.615850e-47 |
| Msa0382670 | Msa1225040 | 0.812313 | 4.514108e-51 | -8.615850e-47 |
| Msa0389800 | Msa1225040 | 0.849921 | 2.371056e-60 | -8.615850e-47 |
| Msa0416470 | Msa1225040 | 0.837966 | 3.804941e-57 | -8.615850e-47 |
| Msa0432260 | Msa1225040 | -0.828977 | 6.659074e-55 | -8.615850e-47 |
| Msa0449220 | Msa1225040 | -0.809052 | 2.288803e-50 | -8.615850e-47 |
| Msa0468140 | Msa1225040 | 0.831286 | 1.819701e-55 | -8.615850e-47 |
| Msa0476730 | Msa1225040 | -0.813337 | 2.693576e-51 | -8.615850e-47 |
| Msa0982260 | Msa1225040 | 0.851670 | 7.629532e-61 | -8.615850e-47 |
| Msa1035040 | Msa1225040 | 0.802823 | 4.672089e-49 | -8.615850e-47 |
| Msa1055710 | Msa1225040 | -0.804296 | 2.312333e-49 | -8.615850e-47 |
| Msa0239420 | Msa1225040 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0266380 | Msa1225040 | -0.823313 | 1.481650e-53 | -8.615850e-47 |
| Msa0274940 | Msa1225040 | 0.847230 | 1.318571e-59 | -8.615850e-47 |
| Msa0315660 | Msa1225040 | 0.852999 | 3.193087e-61 | -8.615850e-47 |
| Msa0330770 | Msa1225040 | -0.804740 | 1.868320e-49 | -8.615850e-47 |
| Msa0341860 | Msa1225040 | -0.812489 | 4.131604e-51 | -8.615850e-47 |
| Msa1124980 | Msa1225040 | 0.815825 | 7.581910e-52 | -8.615850e-47 |
| Msa1167360 | Msa1225040 | 0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa1182400 | Msa1225040 | -0.806663 | 7.372960e-50 | -8.615850e-47 |
| Msa1203090 | Msa1225040 | -0.817286 | 3.568748e-52 | -8.615850e-47 |
| Msa0521100 | Msa1225040 | -0.833232 | 6.003900e-56 | -8.615850e-47 |
| Msa0540160 | Msa1225040 | -0.803389 | 3.568958e-49 | -8.615850e-47 |
| Msa0544930 | Msa1225040 | -0.808550 | 2.931732e-50 | -8.615850e-47 |
| Msa0880050 | Msa1225040 | 0.804488 | 2.108730e-49 | -8.615850e-47 |
| Msa0881240 | Msa1225040 | 0.957697 | 1.447998e-115 | -8.615850e-47 |
| Msa0949840 | Msa1225040 | -0.816007 | 6.904219e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225040 | MtrunA17_Chr4g0063171 | 100.000 | 78 | 0 | 0 | 1 | 78 | 1 | 78 | 8.64e-52 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225040 | AT1G68680.1 | 70.667 | 75 | 20 | 1 | 4 | 78 | 3 | 75 | 5.27e-31 | 103 |
Find 42 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAAATTTCTCTATTTA+AGG | 0.064089 | 8_1:+90300503 | None:intergenic |
| AGTAGAATAATTATGGAATT+TGG | 0.210855 | 8_1:-90300390 | Msa1225040:three_prime_UTR |
| CGAGTAAAATATGGTCTAAT+TGG | 0.226747 | 8_1:-90300327 | Msa1225040:three_prime_UTR |
| ATTCTGGTCAATTAAGAAAA+AGG | 0.227301 | 8_1:-90303780 | None:intergenic |
| ACTTGTGAATAATTTATATA+TGG | 0.326133 | 8_1:-90300215 | Msa1225040:three_prime_UTR |
| GACTAACTTAGAGGGAGAAC+AGG | 0.369848 | 8_1:+90303490 | None:intergenic |
| TTTCAGTTCGTTTGGGGTTG+CGG | 0.370415 | 8_1:-90303393 | Msa1225040:intron |
| TACAATTCTCGAATAGTATA+TGG | 0.376764 | 8_1:+90300437 | None:intergenic |
| GAGCATATATGAGAGGAAAA+AGG | 0.391598 | 8_1:+90303512 | None:intergenic |
| GTTATAATGCGAGTAAAATA+TGG | 0.396809 | 8_1:-90300336 | Msa1225040:three_prime_UTR |
| TTGTTCTTCCTTCTTGCAAC+GGG | 0.436059 | 8_1:+90303553 | None:intergenic |
| GAGCAAATAAGATTTATATC+AGG | 0.443330 | 8_1:+90300258 | None:intergenic |
| AACAAACGATCTCTCAAAAC+AGG | 0.448254 | 8_1:+90303364 | None:intergenic |
| TTGTTTACAGCTGTCTTGGC+TGG | 0.452873 | 8_1:-90303346 | Msa1225040:CDS |
| TCGAGAGTTGTTGAAACAGC+AGG | 0.457017 | 8_1:+90303710 | None:intergenic |
| GATATAAATCTTATTTGCTC+TGG | 0.460790 | 8_1:-90300255 | Msa1225040:three_prime_UTR |
| TCGTTTGTTTACAGCTGTCT+TGG | 0.473619 | 8_1:-90303350 | Msa1225040:CDS |
| TCTCTATTTAAGGTGTTGCC+AGG | 0.473641 | 8_1:+90300513 | None:intergenic |
| TAATTTATATATGGTCTAAG+TGG | 0.475890 | 8_1:-90300206 | None:intergenic |
| ATTGTTCTTCCTTCTTGCAA+CGG | 0.484891 | 8_1:+90303552 | None:intergenic |
| TGATTATACAGAGCATGTAT+TGG | 0.486189 | 8_1:-90300612 | Msa1225040:three_prime_UTR |
| GTGTTTGCTGCTCAAAATCC+TGG | 0.487476 | 8_1:-90300531 | Msa1225040:three_prime_UTR |
| CGCATTATAACACTTGGAGT+TGG | 0.491659 | 8_1:+90300348 | None:intergenic |
| ATCGTTTACATCACAACCTC+AGG | 0.501379 | 8_1:-90300576 | Msa1225040:three_prime_UTR |
| AGAAAACGTTACATGTTAGC+AGG | 0.515067 | 8_1:+90303649 | None:intergenic |
| AGAATAATTATGGAATTTGG+AGG | 0.519417 | 8_1:-90300387 | Msa1225040:three_prime_UTR |
| ACAAGTCAAATAATTTATTG+AGG | 0.525568 | 8_1:+90300552 | None:intergenic |
| ATCAGTGTGATTCATTGTAT+CGG | 0.527719 | 8_1:-90303755 | Msa1225040:five_prime_UTR |
| TTTACTCGCATTATAACACT+TGG | 0.527900 | 8_1:+90300342 | None:intergenic |
| ATTATAACACTTGGAGTTGG+AGG | 0.531140 | 8_1:+90300351 | None:intergenic |
| GTTTCAACAACTCTCGATCT+CGG | 0.543448 | 8_1:-90303704 | Msa1225040:five_prime_UTR |
| GGTTGTGATGTAAACGATGC+TGG | 0.556905 | 8_1:+90300581 | None:intergenic |
| AGTGGAGTGACTAACTTAGA+GGG | 0.580435 | 8_1:+90303482 | None:intergenic |
| TTTCAATTTCAGTTCGTTTG+GGG | 0.590044 | 8_1:-90303399 | Msa1225040:intron |
| AATAATTTATTGAGGACCTG+AGG | 0.609349 | 8_1:+90300560 | None:intergenic |
| ACAGAGAACCCGTTGCAAGA+AGG | 0.610499 | 8_1:-90303561 | Msa1225040:intron |
| GATCTCGGTCAATTCCGCCA+TGG | 0.632156 | 8_1:-90303689 | Msa1225040:exon |
| CGAGAGTTGTTGAAACAGCA+GGG | 0.636152 | 8_1:+90303711 | None:intergenic |
| AGAACAGGAGCATATATGAG+AGG | 0.644560 | 8_1:+90303505 | None:intergenic |
| GAACGACGTCGGCGCCATGG+CGG | 0.678846 | 8_1:+90303675 | None:intergenic |
| GTTGCAAGAAGGAAGAACAA+TGG | 0.706424 | 8_1:-90303550 | Msa1225040:CDS |
| TTAGCAGGATCGAACGACGT+CGG | 0.711088 | 8_1:+90303664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAATAAATAATATAA+TGG | + | chr8_1:90302874-90302893 | None:intergenic | 0.0% |
| !! | ATTATATTATTTATTTAATT+AGG | - | chr8_1:90302873-90302892 | Msa1225040:intron | 0.0% |
| !! | TAGAATAAATTAAAGAAAAA+AGG | + | chr8_1:90300695-90300714 | None:intergenic | 10.0% |
| !!! | ACTGTATTTATCTTTTTTTT+AGG | + | chr8_1:90301552-90301571 | None:intergenic | 15.0% |
| !!! | AGTCAAATTGTTTTTATATA+AGG | - | chr8_1:90301569-90301588 | Msa1225040:intron | 15.0% |
| !!! | GTCATTTTTTTTTTTTTTTG+AGG | + | chr8_1:90302653-90302672 | None:intergenic | 15.0% |
| !! | TGATAAAATTTCTCTATTTA+AGG | + | chr8_1:90303484-90303503 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCCCAATTTTT+TGG | - | chr8_1:90303511-90303530 | Msa1225040:CDS | 15.0% |
| !!! | TTTTTTTTTCCCAATTTTTT+GGG | - | chr8_1:90303512-90303531 | Msa1225040:CDS | 15.0% |
| !! | ACTTGTGAATAATTTATATA+TGG | - | chr8_1:90303769-90303788 | Msa1225040:five_prime_UTR | 15.0% |
| !!! | TTTGAACATTTAGAATAGTT+TGG | - | chr8_1:90300896-90300915 | Msa1225040:intron | 20.0% |
| !!! | TTGAACATTTAGAATAGTTT+GGG | - | chr8_1:90300897-90300916 | Msa1225040:intron | 20.0% |
| !! | TGGTATATGATAGAAAATTA+TGG | - | chr8_1:90301327-90301346 | Msa1225040:intron | 20.0% |
| !!! | ACTATTTTCATAAGTTATCT+TGG | - | chr8_1:90301597-90301616 | Msa1225040:intron | 20.0% |
| !! | TTAATTGATATCAGAATCAA+TGG | + | chr8_1:90302698-90302717 | None:intergenic | 20.0% |
| !! | TAGAATGAAATTACATTGAT+TGG | - | chr8_1:90303181-90303200 | Msa1225040:intron | 20.0% |
| !! | ACAAGTCAAATAATTTATTG+AGG | + | chr8_1:90303435-90303454 | None:intergenic | 20.0% |
| !! | AATAATCTTCCCAAAAAATT+GGG | + | chr8_1:90303524-90303543 | None:intergenic | 20.0% |
| !!! | AGCTTTTAGTAGAATAATTA+TGG | - | chr8_1:90303587-90303606 | Msa1225040:intron | 20.0% |
| !! | AGTAGAATAATTATGGAATT+TGG | - | chr8_1:90303594-90303613 | Msa1225040:intron | 20.0% |
| ! | ATTCATTGTATCGGAAAAAA+GGG | - | chr8_1:90300238-90300257 | Msa1225040:three_prime_UTR | 25.0% |
| ! | AGCAGTTAAAGAATTGATTA+AGG | + | chr8_1:90300398-90300417 | None:intergenic | 25.0% |
| ! | AATGAATTGAATGAAGAAAG+TGG | + | chr8_1:90300523-90300542 | None:intergenic | 25.0% |
| !! | ATTTTCAATTTCAGTTCGTT+TGG | - | chr8_1:90300583-90300602 | Msa1225040:three_prime_UTR | 25.0% |
| !! | TTTTCAATTTCAGTTCGTTT+GGG | - | chr8_1:90300584-90300603 | Msa1225040:three_prime_UTR | 25.0% |
| !! | TGAACATTTAGAATAGTTTG+GGG | - | chr8_1:90300898-90300917 | Msa1225040:intron | 25.0% |
| ! | TGATTGTCTCAAATTATTGT+CGG | + | chr8_1:90301125-90301144 | None:intergenic | 25.0% |
| ! | TTTCTATCATATACCATGTT+TGG | + | chr8_1:90301323-90301342 | None:intergenic | 25.0% |
| ! | AACATTTAGACTATCAAACA+GGG | + | chr8_1:90301437-90301456 | None:intergenic | 25.0% |
| ! | TACAAATTGTTGTCAAATAG+CGG | + | chr8_1:90302046-90302065 | None:intergenic | 25.0% |
| ! | CATTATCATTAGTCCAAATT+TGG | - | chr8_1:90302513-90302532 | Msa1225040:intron | 25.0% |
| !!! | ACGTCAAAATTATTTTGTGA+AGG | + | chr8_1:90302591-90302610 | None:intergenic | 25.0% |
| !! | CAATTAATCTTCATTCGTTT+TGG | - | chr8_1:90302711-90302730 | Msa1225040:intron | 25.0% |
| ! | TTGAGTTATGACAGTAAATA+AGG | - | chr8_1:90302964-90302983 | Msa1225040:intron | 25.0% |
| ! | AATACAGCAACACTAATAAT+AGG | - | chr8_1:90303063-90303082 | Msa1225040:intron | 25.0% |
| ! | ATACAGCAACACTAATAATA+GGG | - | chr8_1:90303064-90303083 | Msa1225040:intron | 25.0% |
| ! | TCTAGTTATACAATTCAGAA+AGG | + | chr8_1:90303165-90303184 | None:intergenic | 25.0% |
| !! | ATGAAATTACATTGATTGGA+TGG | - | chr8_1:90303185-90303204 | Msa1225040:intron | 25.0% |
| ! | GGATGGTAACAAAAAATTTA+CGG | - | chr8_1:90303202-90303221 | Msa1225040:intron | 25.0% |
| ! | CAATAATCTTCCCAAAAAAT+TGG | + | chr8_1:90303525-90303544 | None:intergenic | 25.0% |
| ! | TACAATTCTCGAATAGTATA+TGG | + | chr8_1:90303550-90303569 | None:intergenic | 25.0% |
| ! | AGAATAATTATGGAATTTGG+AGG | - | chr8_1:90303597-90303616 | Msa1225040:intron | 25.0% |
| ! | GTTATAATGCGAGTAAAATA+TGG | - | chr8_1:90303648-90303667 | Msa1225040:intron | 25.0% |
| ! | GAGCAAATAAGATTTATATC+AGG | + | chr8_1:90303705-90303724 | None:intergenic | 25.0% |
| !! | GATATAAATCTTATTTGCTC+TGG | - | chr8_1:90303705-90303724 | Msa1225040:five_prime_UTR | 25.0% |
| ATCAGTGTGATTCATTGTAT+CGG | - | chr8_1:90300229-90300248 | Msa1225040:three_prime_UTR | 30.0% | |
| GATTCATTGTATCGGAAAAA+AGG | - | chr8_1:90300237-90300256 | Msa1225040:three_prime_UTR | 30.0% | |
| TTTCAATTTCAGTTCGTTTG+GGG | - | chr8_1:90300585-90300604 | Msa1225040:three_prime_UTR | 30.0% | |
| ! | CTTTATGCGTGACTTAATTT+TGG | - | chr8_1:90300798-90300817 | Msa1225040:intron | 30.0% |
| ! | CTCATTTAGAGTTAAGAAAC+CGG | - | chr8_1:90300840-90300859 | Msa1225040:intron | 30.0% |
| ! | TTTTGTGTAGGATTGCAAAA+TGG | - | chr8_1:90300872-90300891 | Msa1225040:intron | 30.0% |
| TTTGTGTAGGATTGCAAAAT+GGG | - | chr8_1:90300873-90300892 | Msa1225040:intron | 30.0% | |
| ! | GAACATTTAGAATAGTTTGG+GGG | - | chr8_1:90300899-90300918 | Msa1225040:intron | 30.0% |
| TACAACATCTTTCCTACTAT+AGG | + | chr8_1:90301010-90301029 | None:intergenic | 30.0% | |
| AAGATGTTGTAACTAAGCTT+AGG | - | chr8_1:90301019-90301038 | Msa1225040:intron | 30.0% | |
| ! | TAATGAGTTGAATCCAAACA+TGG | - | chr8_1:90301307-90301326 | Msa1225040:intron | 30.0% |
| CAACATTTAGACTATCAAAC+AGG | + | chr8_1:90301438-90301457 | None:intergenic | 30.0% | |
| ATAGTCTAAATGTTGTCAAG+TGG | - | chr8_1:90301443-90301462 | Msa1225040:intron | 30.0% | |
| TATGCTATAAGGGCTTAATT+AGG | + | chr8_1:90301473-90301492 | None:intergenic | 30.0% | |
| AATTAAGCCCTTATAGCATA+AGG | - | chr8_1:90301473-90301492 | Msa1225040:intron | 30.0% | |
| ATTAAGCCCTTATAGCATAA+GGG | - | chr8_1:90301474-90301493 | Msa1225040:intron | 30.0% | |
| AAGTTATCTTGGAGAGTTTA+TGG | - | chr8_1:90301608-90301627 | Msa1225040:intron | 30.0% | |
| GCTTATGAACATATCAGTAA+CGG | - | chr8_1:90301647-90301666 | Msa1225040:intron | 30.0% | |
| ! | GCTAATTTGAAATTATCTGC+TGG | + | chr8_1:90301715-90301734 | None:intergenic | 30.0% |
| TCAAATTAGCCAATTCAAAC+AGG | - | chr8_1:90301725-90301744 | Msa1225040:intron | 30.0% | |
| AAATGCAAAAGATTAGGGTT+AGG | + | chr8_1:90301751-90301770 | None:intergenic | 30.0% | |
| ! | AACCCTAATCTTTTGCATTT+TGG | - | chr8_1:90301751-90301770 | Msa1225040:intron | 30.0% |
| ! | ACCCTAATCTTTTGCATTTT+GGG | - | chr8_1:90301752-90301771 | Msa1225040:intron | 30.0% |
| TCCCAAAATGCAAAAGATTA+GGG | + | chr8_1:90301756-90301775 | None:intergenic | 30.0% | |
| ATCCCAAAATGCAAAAGATT+AGG | + | chr8_1:90301757-90301776 | None:intergenic | 30.0% | |
| !! | ACTTGTTAACTTTTGCTTTG+TGG | - | chr8_1:90301860-90301879 | Msa1225040:intron | 30.0% |
| ! | CTTGTTAACTTTTGCTTTGT+GGG | - | chr8_1:90301861-90301880 | Msa1225040:intron | 30.0% |
| TTGTATTAAATAGCGTTTCG+TGG | - | chr8_1:90302061-90302080 | Msa1225040:intron | 30.0% | |
| AGATGTCTCGGAAAAATTAT+GGG | + | chr8_1:90302195-90302214 | None:intergenic | 30.0% | |
| TAGATGTCTCGGAAAAATTA+TGG | + | chr8_1:90302196-90302215 | None:intergenic | 30.0% | |
| AAACAGTCATTTAGATGTCT+CGG | + | chr8_1:90302207-90302226 | None:intergenic | 30.0% | |
| ! | AAAAAAAGTGCAAACTGAAC+AGG | - | chr8_1:90302425-90302444 | Msa1225040:intron | 30.0% |
| ! | GAATTTTTCTGATGCTAAAC+TGG | - | chr8_1:90302471-90302490 | Msa1225040:intron | 30.0% |
| ATCATTAGTCCAAATTTGGT+TGG | - | chr8_1:90302517-90302536 | Msa1225040:intron | 30.0% | |
| TCAGAATAGAATCACAACTT+AGG | - | chr8_1:90302549-90302568 | Msa1225040:intron | 30.0% | |
| !! | TTATTTTGTGAAGGAATCCA+AGG | + | chr8_1:90302582-90302601 | None:intergenic | 30.0% |
| ! | TTAGACTTTAGAGAAAGTAG+TGG | - | chr8_1:90302749-90302768 | Msa1225040:intron | 30.0% |
| TTCATTATAAGATGCCAGTT+TGG | - | chr8_1:90302804-90302823 | Msa1225040:intron | 30.0% | |
| !! | TATAATGGCATTGACTTCAA+AGG | + | chr8_1:90302859-90302878 | None:intergenic | 30.0% |
| CAAGCCAAAATGATACTAAA+AGG | - | chr8_1:90302993-90303012 | Msa1225040:intron | 30.0% | |
| ! | AGCACCTTTTAGTATCATTT+TGG | + | chr8_1:90303000-90303019 | None:intergenic | 30.0% |
| ! | TGCTCGTTCTTTGTTAATTT+TGG | - | chr8_1:90303016-90303035 | Msa1225040:intron | 30.0% |
| ACTAATAATAGGGAGAAGTA+TGG | - | chr8_1:90303074-90303093 | Msa1225040:intron | 30.0% | |
| ! | CTAATAATAGGGAGAAGTAT+GGG | - | chr8_1:90303075-90303094 | Msa1225040:intron | 30.0% |
| TACAATTCAGAAAGGAAACA+TGG | + | chr8_1:90303157-90303176 | None:intergenic | 30.0% | |
| TGGTCAATTGCAAATTTACA+AGG | + | chr8_1:90303247-90303266 | None:intergenic | 30.0% | |
| TTGACTAAAAAAACAGTCGA+TGG | + | chr8_1:90303281-90303300 | None:intergenic | 30.0% | |
| TGATCTGGATATTGTCATTA+AGG | + | chr8_1:90303328-90303347 | None:intergenic | 30.0% | |
| TGATTATACAGAGCATGTAT+TGG | - | chr8_1:90303372-90303391 | Msa1225040:CDS | 30.0% | |
| AATAATTTATTGAGGACCTG+AGG | + | chr8_1:90303427-90303446 | None:intergenic | 30.0% | |
| TTTACTCGCATTATAACACT+TGG | + | chr8_1:90303645-90303664 | None:intergenic | 30.0% | |
| CGAGTAAAATATGGTCTAAT+TGG | - | chr8_1:90303657-90303676 | Msa1225040:intron | 30.0% | |
| AGAAAACGTTACATGTTAGC+AGG | + | chr8_1:90300338-90300357 | None:intergenic | 35.0% | |
| ATTGTTCTTCCTTCTTGCAA+CGG | + | chr8_1:90300435-90300454 | None:intergenic | 35.0% | |
| GAGCATATATGAGAGGAAAA+AGG | + | chr8_1:90300475-90300494 | None:intergenic | 35.0% | |
| AACAAACGATCTCTCAAAAC+AGG | + | chr8_1:90300623-90300642 | None:intergenic | 35.0% | |
| TTAGTATTCTGTGCAACTTG+TGG | - | chr8_1:90300771-90300790 | Msa1225040:intron | 35.0% | |
| CTACACAAAACACTAAACAC+CGG | + | chr8_1:90300862-90300881 | None:intergenic | 35.0% | |
| ATGTTGTAACTAAGCTTAGG+TGG | - | chr8_1:90301022-90301041 | Msa1225040:intron | 35.0% | |
| TAACTAAGCTTAGGTGGTTT+GGG | - | chr8_1:90301028-90301047 | Msa1225040:intron | 35.0% | |
| GTAGTTATATTTGTCCGTGT+CGG | - | chr8_1:90301156-90301175 | Msa1225040:intron | 35.0% | |
| GATAAGCCCTTATGCTATAA+GGG | + | chr8_1:90301483-90301502 | None:intergenic | 35.0% | |
| TGATAAGCCCTTATGCTATA+AGG | + | chr8_1:90301484-90301503 | None:intergenic | 35.0% | |
| AAGACTGCTTAGACAGTTTA+TGG | + | chr8_1:90301676-90301695 | None:intergenic | 35.0% | |
| CAGAGAAGCAATTCAAACTT+TGG | + | chr8_1:90301814-90301833 | None:intergenic | 35.0% | |
| AAGTTTGAATTGCTTCTCTG+AGG | - | chr8_1:90301814-90301833 | Msa1225040:intron | 35.0% | |
| GAAAGGGGAAATAACATGAT+AGG | - | chr8_1:90301902-90301921 | Msa1225040:intron | 35.0% | |
| AGTCTATGTATCCTTGATCT+CGG | - | chr8_1:90301963-90301982 | Msa1225040:intron | 35.0% | |
| TCTCGGAAAAATTATGGGAA+GGG | + | chr8_1:90302190-90302209 | None:intergenic | 35.0% | |
| GAGACATCTAAATGACTGTT+TGG | - | chr8_1:90302206-90302225 | Msa1225040:intron | 35.0% | |
| CTTAAACTTTCAGTGTGGTT+AGG | - | chr8_1:90302449-90302468 | Msa1225040:intron | 35.0% | |
| ! | TAGTCCAAATTTGGTTGGTA+AGG | - | chr8_1:90302522-90302541 | Msa1225040:intron | 35.0% |
| !! | AGTCCAAATTTGGTTGGTAA+GGG | - | chr8_1:90302523-90302542 | Msa1225040:intron | 35.0% |
| ! | ACTTTAGAGAAAGTAGTGGA+AGG | - | chr8_1:90302753-90302772 | Msa1225040:intron | 35.0% |
| ! | TGGAAGGTTTAAGATCAGTT+AGG | - | chr8_1:90302769-90302788 | Msa1225040:intron | 35.0% |
| ! | GGAAGGTTTAAGATCAGTTA+GGG | - | chr8_1:90302770-90302789 | Msa1225040:intron | 35.0% |
| ACTCAATTAGTGTCAGTTTG+TGG | + | chr8_1:90302950-90302969 | None:intergenic | 35.0% | |
| GACAAGACAAACATGTAAGA+GGG | + | chr8_1:90303118-90303137 | None:intergenic | 35.0% | |
| AGACAAGACAAACATGTAAG+AGG | + | chr8_1:90303119-90303138 | None:intergenic | 35.0% | |
| !! | AGTCGATGGATTGTTGAATT+TGG | + | chr8_1:90303267-90303286 | None:intergenic | 35.0% |
| AGCATCATACAAATCTGATC+TGG | + | chr8_1:90303343-90303362 | None:intergenic | 35.0% | |
| ATTATAACACTTGGAGTTGG+AGG | + | chr8_1:90303636-90303655 | None:intergenic | 35.0% | |
| GTTTCAACAACTCTCGATCT+CGG | - | chr8_1:90300280-90300299 | Msa1225040:three_prime_UTR | 40.0% | |
| TTGTTCTTCCTTCTTGCAAC+GGG | + | chr8_1:90300434-90300453 | None:intergenic | 40.0% | |
| GTTGCAAGAAGGAAGAACAA+TGG | - | chr8_1:90300434-90300453 | Msa1225040:three_prime_UTR | 40.0% | |
| AGAGGAAAAAGGAACTTGAG+AGG | + | chr8_1:90300464-90300483 | None:intergenic | 40.0% | |
| ! | AGAACAGGAGCATATATGAG+AGG | + | chr8_1:90300482-90300501 | None:intergenic | 40.0% |
| AGTGGAGTGACTAACTTAGA+GGG | + | chr8_1:90300505-90300524 | None:intergenic | 40.0% | |
| AAGTGGAGTGACTAACTTAG+AGG | + | chr8_1:90300506-90300525 | None:intergenic | 40.0% | |
| TCGTTTGTTTACAGCTGTCT+TGG | - | chr8_1:90300634-90300653 | Msa1225040:CDS | 40.0% | |
| ! | CGGTGTTTAGTGTTTTGTGT+AGG | - | chr8_1:90300860-90300879 | Msa1225040:intron | 40.0% |
| GTAACTAAGCTTAGGTGGTT+TGG | - | chr8_1:90301027-90301046 | Msa1225040:intron | 40.0% | |
| AGTAAGGAGGGTAGATCATA+TGG | - | chr8_1:90301080-90301099 | Msa1225040:intron | 40.0% | |
| TATGAAGCACAAACTCTCCT+TGG | + | chr8_1:90301218-90301237 | None:intergenic | 40.0% | |
| AAGGAGAGTTTGTGCTTCAT+AGG | - | chr8_1:90301217-90301236 | Msa1225040:intron | 40.0% | |
| AGAGTTTGTGCTTCATAGGA+TGG | - | chr8_1:90301221-90301240 | Msa1225040:intron | 40.0% | |
| TGTCTAAGCAGTCTTACAAG+TGG | - | chr8_1:90301681-90301700 | Msa1225040:intron | 40.0% | |
| TGTGTGAGTAGACAAGGAAA+GGG | - | chr8_1:90301886-90301905 | Msa1225040:intron | 40.0% | |
| TCCTTGATCTCGGAAAATAG+AGG | - | chr8_1:90301973-90301992 | Msa1225040:intron | 40.0% | |
| ! | ACCTCTATTTTCCGAGATCA+AGG | + | chr8_1:90301977-90301996 | None:intergenic | 40.0% |
| CATATGGCATTGTAGCATAG+CGG | + | chr8_1:90302011-90302030 | None:intergenic | 40.0% | |
| TTGTCAAATAGCGGCTATAC+TGG | + | chr8_1:90302037-90302056 | None:intergenic | 40.0% | |
| TGCGCTATAACGCAATAACA+CGG | + | chr8_1:90302113-90302132 | None:intergenic | 40.0% | |
| TGACAACACTAGTCAATGCT+AGG | - | chr8_1:90302147-90302166 | Msa1225040:intron | 40.0% | |
| CAATGCTAGGCAAGAAAAGT+AGG | - | chr8_1:90302160-90302179 | Msa1225040:intron | 40.0% | |
| GTCTCGGAAAAATTATGGGA+AGG | + | chr8_1:90302191-90302210 | None:intergenic | 40.0% | |
| CAGGTCTTAAACTTTCAGTG+TGG | - | chr8_1:90302444-90302463 | Msa1225040:intron | 40.0% | |
| !! | GTCCAAATTTGGTTGGTAAG+GGG | - | chr8_1:90302524-90302543 | Msa1225040:intron | 40.0% |
| !! | TCCAAATTTGGTTGGTAAGG+GGG | - | chr8_1:90302525-90302544 | Msa1225040:intron | 40.0% |
| ACAACTTAGGCATCTTTCCT+TGG | - | chr8_1:90302562-90302581 | Msa1225040:intron | 40.0% | |
| !! | TAAGATCAGTTAGGGTGTTG+AGG | - | chr8_1:90302778-90302797 | Msa1225040:intron | 40.0% |
| TAAGAGCAAGAATGCCAAAC+TGG | + | chr8_1:90302821-90302840 | None:intergenic | 40.0% | |
| !! | TGGCATTGACTTCAAAGGAA+TGG | + | chr8_1:90302854-90302873 | None:intergenic | 40.0% |
| ATCGTTTACATCACAACCTC+AGG | - | chr8_1:90303408-90303427 | Msa1225040:intron | 40.0% | |
| !! | TCTCTATTTAAGGTGTTGCC+AGG | + | chr8_1:90303474-90303493 | None:intergenic | 40.0% |
| CGCATTATAACACTTGGAGT+TGG | + | chr8_1:90303639-90303658 | None:intergenic | 40.0% | |
| CGAGAGTTGTTGAAACAGCA+GGG | + | chr8_1:90300276-90300295 | None:intergenic | 45.0% | |
| TCGAGAGTTGTTGAAACAGC+AGG | + | chr8_1:90300277-90300296 | None:intergenic | 45.0% | |
| GGAAAAAGGAACTTGAGAGG+AGG | + | chr8_1:90300461-90300480 | None:intergenic | 45.0% | |
| GACTAACTTAGAGGGAGAAC+AGG | + | chr8_1:90300497-90300516 | None:intergenic | 45.0% | |
| ! | TTTCAGTTCGTTTGGGGTTG+CGG | - | chr8_1:90300591-90300610 | Msa1225040:three_prime_UTR | 45.0% |
| TTGTTTACAGCTGTCTTGGC+TGG | - | chr8_1:90300638-90300657 | Msa1225040:CDS | 45.0% | |
| ! | TTGGCTGGTGCTTTTCTTCA+TGG | - | chr8_1:90300653-90300672 | Msa1225040:intron | 45.0% |
| AGAGAGAGAGAGAGAGAGTT+GGG | - | chr8_1:90300972-90300991 | Msa1225040:intron | 45.0% | |
| AAGGAGGGTAGATCATATGG+AGG | - | chr8_1:90301083-90301102 | Msa1225040:intron | 45.0% | |
| GCACAAACTCTCCTTGGATT+AGG | + | chr8_1:90301212-90301231 | None:intergenic | 45.0% | |
| GTTTGTGCTTCATAGGATGG+AGG | - | chr8_1:90301224-90301243 | Msa1225040:intron | 45.0% | |
| ACTAAGTGGGGTCAGTTACA+TGG | + | chr8_1:90301364-90301383 | None:intergenic | 45.0% | |
| ATGTAACTGACCCCACTTAG+TGG | - | chr8_1:90301363-90301382 | Msa1225040:intron | 45.0% | |
| TGTAACTGACCCCACTTAGT+GGG | - | chr8_1:90301364-90301383 | Msa1225040:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8_1:90301376-90301395 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8_1:90301377-90301396 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr8_1:90301378-90301397 | None:intergenic | 45.0% |
| AGGGTTAGGCCTGTTTGAAT+TGG | + | chr8_1:90301737-90301756 | None:intergenic | 45.0% | |
| !! | AATTGCTTCTCTGAGGCTAC+TGG | - | chr8_1:90301821-90301840 | Msa1225040:intron | 45.0% |
| CTGTGTGAGTAGACAAGGAA+AGG | - | chr8_1:90301885-90301904 | Msa1225040:intron | 45.0% | |
| GTGTGAGTAGACAAGGAAAG+GGG | - | chr8_1:90301887-90301906 | Msa1225040:intron | 45.0% | |
| CGCTATGCTACAATGCCATA+TGG | - | chr8_1:90302009-90302028 | Msa1225040:intron | 45.0% | |
| GCTATAACGCAATAACACGG+CGG | + | chr8_1:90302110-90302129 | None:intergenic | 45.0% | |
| GGTTGTGATGTAAACGATGC+TGG | + | chr8_1:90303406-90303425 | None:intergenic | 45.0% | |
| ! | GTGTTTGCTGCTCAAAATCC+TGG | - | chr8_1:90303453-90303472 | Msa1225040:intron | 45.0% |
| TTAGCAGGATCGAACGACGT+CGG | + | chr8_1:90300323-90300342 | None:intergenic | 50.0% | |
| ACAGAGAACCCGTTGCAAGA+AGG | - | chr8_1:90300423-90300442 | Msa1225040:three_prime_UTR | 50.0% | |
| ! | GCTGGTGCTTTTCTTCATGG+AGG | - | chr8_1:90300656-90300675 | Msa1225040:intron | 50.0% |
| GAGAGAGAGAGAGAGAGAGT+TGG | - | chr8_1:90300971-90300990 | Msa1225040:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | - | chr8_1:90300973-90300992 | Msa1225040:intron | 50.0% | |
| AGAGAGAGAGAGTTGGGGTT+GGG | - | chr8_1:90300978-90300997 | Msa1225040:intron | 50.0% | |
| GCATGTAGAGAGAAGACACG+TGG | - | chr8_1:90301050-90301069 | Msa1225040:intron | 50.0% | |
| GACACGTGGATTCTGCAGTA+AGG | - | chr8_1:90301064-90301083 | Msa1225040:intron | 50.0% | |
| ACGTGGATTCTGCAGTAAGG+AGG | - | chr8_1:90301067-90301086 | Msa1225040:intron | 50.0% | |
| CGTGGATTCTGCAGTAAGGA+GGG | - | chr8_1:90301068-90301087 | Msa1225040:intron | 50.0% | |
| GATTAGGCATGTGCCAGTGT+CGG | + | chr8_1:90301196-90301215 | None:intergenic | 50.0% | |
| ACTGGCACATGCCTAATCCA+AGG | - | chr8_1:90301198-90301217 | Msa1225040:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr8_1:90301370-90301389 | Msa1225040:intron | 50.0% | |
| !! | TCTCTGAGGCTACTGGAGAT+TGG | - | chr8_1:90301828-90301847 | Msa1225040:intron | 50.0% |
| TGGGTCTGTGTGAGTAGACA+AGG | - | chr8_1:90301880-90301899 | Msa1225040:intron | 50.0% | |
| GCCCCCTTACCAACCAAATT+TGG | + | chr8_1:90302529-90302548 | None:intergenic | 50.0% | |
| GATCTCGGTCAATTCCGCCA+TGG | - | chr8_1:90300295-90300314 | Msa1225040:three_prime_UTR | 55.0% | |
| GAGAGAGAGAGAGTTGGGGT+TGG | - | chr8_1:90300977-90300996 | Msa1225040:intron | 55.0% | |
| GAGAGAGAGAGTTGGGGTTG+GGG | - | chr8_1:90300979-90300998 | Msa1225040:intron | 55.0% | |
| GTTGGGGTGGCACCTATAGT+AGG | - | chr8_1:90300995-90301014 | Msa1225040:intron | 55.0% | |
| GCGGCTATACTGGCACCATA+TGG | + | chr8_1:90302027-90302046 | None:intergenic | 55.0% | |
| AGAGAGAGTTGGGGTTGGGG+TGG | - | chr8_1:90300982-90301001 | Msa1225040:intron | 60.0% | |
| ATCGAACGACGTCGGCGCCA+TGG | + | chr8_1:90300315-90300334 | None:intergenic | 65.0% | |
| ! | ACACGCGTCGGTGTCCGACA+CGG | + | chr8_1:90301173-90301192 | None:intergenic | 65.0% |
| ! | TGCCAGTGTCGGACACGCGT+CGG | + | chr8_1:90301185-90301204 | None:intergenic | 65.0% |
| GAACGACGTCGGCGCCATGG+CGG | + | chr8_1:90300312-90300331 | None:intergenic | 70.0% | |
| CACCGACGCGTGTCCGACAC+TGG | - | chr8_1:90301180-90301199 | Msa1225040:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 90300209 | 90303797 | 90300209 | ID=Msa1225040;Name=Msa1225040 |
| chr8_1 | mRNA | 90300209 | 90303797 | 90300209 | ID=Msa1225040-mRNA-1;Parent=Msa1225040;Name=Msa1225040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0.66|0.75|4|423|78 |
| chr8_1 | exon | 90300209 | 90300662 | 90300209 | ID=Msa1225040-mRNA-1:exon:32854;Parent=Msa1225040-mRNA-1 |
| chr8_1 | exon | 90303319 | 90303409 | 90303319 | ID=Msa1225040-mRNA-1:exon:32853;Parent=Msa1225040-mRNA-1 |
| chr8_1 | exon | 90303497 | 90303579 | 90303497 | ID=Msa1225040-mRNA-1:exon:32852;Parent=Msa1225040-mRNA-1 |
| chr8_1 | exon | 90303661 | 90303797 | 90303661 | ID=Msa1225040-mRNA-1:exon:32851;Parent=Msa1225040-mRNA-1 |
| chr8_1 | five_prime_UTR | 90303693 | 90303797 | 90303693 | ID=Msa1225040-mRNA-1:five_prime_utr;Parent=Msa1225040-mRNA-1 |
| chr8_1 | CDS | 90303661 | 90303692 | 90303661 | ID=Msa1225040-mRNA-1:cds;Parent=Msa1225040-mRNA-1 |
| chr8_1 | CDS | 90303497 | 90303579 | 90303497 | ID=Msa1225040-mRNA-1:cds;Parent=Msa1225040-mRNA-1 |
| chr8_1 | CDS | 90303319 | 90303409 | 90303319 | ID=Msa1225040-mRNA-1:cds;Parent=Msa1225040-mRNA-1 |
| chr8_1 | CDS | 90300632 | 90300662 | 90300632 | ID=Msa1225040-mRNA-1:cds;Parent=Msa1225040-mRNA-1 |
| chr8_1 | three_prime_UTR | 90300209 | 90300631 | 90300209 | ID=Msa1225040-mRNA-1:three_prime_utr;Parent=Msa1225040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
