Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102600 | sp|P35016|ENPL_CATRO | 82.784 | 819 | 138 | 2 | 1 | 818 | 1 | 817 | 0.0 | 1300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102600 | G7I7Q4 | 99.389 | 818 | 5 | 0 | 1 | 818 | 1 | 818 | 0.0 | 1642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa0102600 | 0.870540 | 1.350541e-66 | -8.615850e-47 |
| Msa0057890 | Msa0102600 | 0.891922 | 2.550521e-74 | -8.615850e-47 |
| Msa0102600 | Msa0147380 | 0.997890 | 2.198117e-251 | -8.615850e-47 |
| Msa0102600 | Msa0372420 | 0.850729 | 1.406425e-60 | -8.615850e-47 |
| Msa0102600 | Msa0382400 | 0.834431 | 3.010194e-56 | -8.615850e-47 |
| Msa0102600 | Msa0432130 | 0.844350 | 7.983166e-59 | -8.615850e-47 |
| Msa0102600 | Msa0476640 | 0.850084 | 2.133632e-60 | -8.615850e-47 |
| Msa0102600 | Msa0707100 | 0.805775 | 1.134080e-49 | -8.615850e-47 |
| Msa0102600 | Msa0819540 | 0.800744 | 1.248446e-48 | -8.615850e-47 |
| Msa0102600 | Msa0867160 | 0.853426 | 2.408725e-61 | -8.615850e-47 |
| Msa0102600 | Msa1041140 | 0.900096 | 1.030714e-77 | -8.615850e-47 |
| Msa0102600 | Msa1082290 | 0.863942 | 1.735907e-64 | -8.615850e-47 |
| Msa0102600 | Msa1082300 | 0.849043 | 4.165735e-60 | -8.615850e-47 |
| Msa0102600 | Msa1127190 | 0.857616 | 1.445850e-62 | -8.615850e-47 |
| Msa0102600 | Msa1168990 | 0.824492 | 7.838142e-54 | -8.615850e-47 |
| Msa0102600 | Msa1169080 | 0.808362 | 3.214408e-50 | -8.615850e-47 |
| Msa0102600 | Msa1235380 | 0.837283 | 5.695839e-57 | -8.615850e-47 |
| Msa0102600 | Msa1276530 | 0.800047 | 1.730681e-48 | -8.615850e-47 |
| Msa0102600 | Msa1356020 | 0.805597 | 1.236495e-49 | -8.615850e-47 |
| Msa0102600 | Msa1362020 | 0.902012 | 1.497261e-78 | -8.615850e-47 |
| Msa0102600 | Msa1421460 | 0.832055 | 1.175693e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102600 | MtrunA17_Chr1g0156731 | 99.389 | 818 | 5 | 0 | 1 | 818 | 1 | 818 | 0.0 | 1642 |
| Msa0102600 | MtrunA17_Chr6g0469201 | 49.508 | 711 | 317 | 7 | 75 | 780 | 2 | 675 | 0.0 | 647 |
| Msa0102600 | MtrunA17_Chr5g0446951 | 48.718 | 702 | 319 | 8 | 78 | 775 | 5 | 669 | 0.0 | 618 |
| Msa0102600 | MtrunA17_Chr5g0446941 | 48.718 | 702 | 319 | 8 | 78 | 775 | 5 | 669 | 0.0 | 618 |
| Msa0102600 | MtrunA17_Chr1g0202601 | 47.283 | 736 | 316 | 11 | 75 | 799 | 7 | 681 | 0.0 | 604 |
| Msa0102600 | MtrunA17_Chr5g0447581 | 46.164 | 743 | 345 | 15 | 77 | 804 | 89 | 791 | 0.0 | 597 |
| Msa0102600 | MtrunA17_Chr5g0420861 | 44.912 | 737 | 352 | 15 | 76 | 801 | 80 | 773 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102600 | AT4G24190.1 | 83.055 | 779 | 127 | 3 | 1 | 778 | 1 | 775 | 0.0 | 1245 |
| Msa0102600 | AT4G24190.2 | 83.055 | 779 | 127 | 3 | 1 | 778 | 1 | 775 | 0.0 | 1244 |
| Msa0102600 | AT5G52640.1 | 49.041 | 730 | 330 | 8 | 75 | 799 | 2 | 694 | 0.0 | 649 |
| Msa0102600 | AT5G56000.1 | 47.765 | 716 | 333 | 7 | 75 | 786 | 2 | 680 | 0.0 | 626 |
| Msa0102600 | AT5G56010.1 | 47.943 | 705 | 326 | 7 | 75 | 775 | 2 | 669 | 0.0 | 618 |
| Msa0102600 | AT5G56030.1 | 47.943 | 705 | 326 | 7 | 75 | 775 | 2 | 669 | 0.0 | 616 |
| Msa0102600 | AT3G07770.1 | 47.525 | 707 | 321 | 13 | 77 | 773 | 94 | 760 | 0.0 | 610 |
| Msa0102600 | AT3G07770.3 | 47.525 | 707 | 321 | 13 | 77 | 773 | 94 | 760 | 0.0 | 610 |
| Msa0102600 | AT3G07770.2 | 47.525 | 707 | 321 | 13 | 77 | 773 | 94 | 760 | 0.0 | 610 |
| Msa0102600 | AT2G04030.1 | 45.200 | 750 | 338 | 17 | 75 | 799 | 74 | 775 | 0.0 | 602 |
| Msa0102600 | AT5G56030.2 | 46.049 | 734 | 326 | 8 | 75 | 775 | 2 | 698 | 0.0 | 601 |
| Msa0102600 | AT2G04030.2 | 45.067 | 750 | 336 | 17 | 75 | 799 | 74 | 772 | 0.0 | 598 |
Find 208 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACAATGTTTATCAAATT+TGG | 0.108599 | 1_3:+9458283 | None:intergenic |
| CCTCACTGATAAAGACATTT+TGG | 0.132107 | 1_3:-9462566 | Msa0102600:CDS |
| CTCAATCTAATTGGGCAATT+TGG | 0.152816 | 1_3:-9461932 | Msa0102600:CDS |
| CTCAATGATACCAAGTTTAA+TGG | 0.159199 | 1_3:+9459761 | None:intergenic |
| GGAGGATTTAGTAAAGAATT+TGG | 0.170307 | 1_3:-9462104 | Msa0102600:CDS |
| GACCCTCCTTGGACACATTT+TGG | 0.171757 | 1_3:+9459284 | None:intergenic |
| ACTACTACTGTCCTCAATTT+TGG | 0.200676 | 1_3:-9458173 | Msa0102600:three_prime_UTR |
| TTAACTTCCCTATCTATATC+TGG | 0.204471 | 1_3:-9460972 | Msa0102600:CDS |
| GCAACGTGGCGTTGATTAAT+TGG | 0.209213 | 1_3:+9463761 | None:intergenic |
| AGCTGAAGTTTCAAGGCTTA+TGG | 0.218402 | 1_3:-9463086 | Msa0102600:CDS |
| AGTGGTGATCTCAATCTAAT+TGG | 0.239122 | 1_3:-9461941 | Msa0102600:CDS |
| TTCATCTTCACTTTCCTCCT+TGG | 0.262279 | 1_3:+9460743 | None:intergenic |
| ATATACTCTCTCTTTGTTAC+TGG | 0.262725 | 1_3:+9463658 | None:intergenic |
| TCATCTTCACTTTCCTCCTT+GGG | 0.274450 | 1_3:+9460744 | None:intergenic |
| TGTCGGTTGCAGTTATTTCT+TGG | 0.277555 | 1_3:-9458564 | Msa0102600:three_prime_UTR |
| TCTTCCTCTGTAACCTCCTT+TGG | 0.284101 | 1_3:+9460609 | None:intergenic |
| CAATTCACTTTACAGTAATA+AGG | 0.298653 | 1_3:-9463053 | Msa0102600:CDS |
| AATTCTAGAAGCAAAATCTT+TGG | 0.301414 | 1_3:+9458780 | None:intergenic |
| ACCAAGTTCTGGAATGAGTT+TGG | 0.314376 | 1_3:-9459789 | Msa0102600:CDS |
| GAGGATTTAGTAAAGAATTT+GGG | 0.326668 | 1_3:-9462103 | Msa0102600:CDS |
| TTGCTTCCCCAGATATAGAT+AGG | 0.331375 | 1_3:+9460964 | None:intergenic |
| TGCATCAAGTATTCATCAAC+TGG | 0.336633 | 1_3:+9459337 | None:intergenic |
| CGCAGTACGAAAAGCAATAT+TGG | 0.349572 | 1_3:-9458209 | Msa0102600:three_prime_UTR |
| ATCTGAATTTCAGGTATGTA+TGG | 0.358421 | 1_3:-9461747 | Msa0102600:intron |
| CCACTTAGTTAGATCCTTGA+AGG | 0.361563 | 1_3:+9459219 | None:intergenic |
| TTCCTTGCTGGGACGAAGAA+TGG | 0.362934 | 1_3:+9463685 | None:intergenic |
| CCCGAGTTTCAGACCCTCCT+TGG | 0.369926 | 1_3:+9459273 | None:intergenic |
| CTCGTCTAACATACAACTTC+AGG | 0.373088 | 1_3:+9460311 | None:intergenic |
| GTAGTGGTGACATCAAAATT+TGG | 0.373244 | 1_3:-9459124 | Msa0102600:CDS |
| ATTCTAGAAGCAAAATCTTT+GGG | 0.376348 | 1_3:+9458781 | None:intergenic |
| CTTCTTCTTCTCGCAGATCA+AGG | 0.377003 | 1_3:-9463503 | Msa0102600:intron |
| TGTAGGCATTGGACAAGATT+AGG | 0.378748 | 1_3:-9462597 | Msa0102600:intron |
| GAGGTCAATACACCAAGTTC+TGG | 0.382290 | 1_3:-9459800 | Msa0102600:CDS |
| TCTTTGTCAGTGGACTCGTC+AGG | 0.385604 | 1_3:+9460003 | None:intergenic |
| TAAATGATGTGAAGGCTATA+TGG | 0.388507 | 1_3:-9460641 | Msa0102600:CDS |
| TCCAAACTCATTCCAGAACT+TGG | 0.392555 | 1_3:+9459788 | None:intergenic |
| TACAAGTCCTGAGGTGCTTT+AGG | 0.402740 | 1_3:+9460364 | None:intergenic |
| AGTTTCAAGCTGAAGTTTCA+AGG | 0.404580 | 1_3:-9463093 | Msa0102600:CDS |
| TTGGGTACCATAGCAAAATC+TGG | 0.405084 | 1_3:-9462085 | Msa0102600:CDS |
| TCCCGGAGTTCCTTGATGAT+AGG | 0.409122 | 1_3:+9458995 | None:intergenic |
| TCCTCTTCAACTGTTGCGTC+AGG | 0.409870 | 1_3:+9458724 | None:intergenic |
| GAAGGTTCTAACAGAACGTT+TGG | 0.419900 | 1_3:+9463597 | None:intergenic |
| GGTCCTCTTCGGCAAGCTTA+CGG | 0.422206 | 1_3:+9460025 | None:intergenic |
| ACTCGCTGGCCTCTTCTTTG+AGG | 0.426467 | 1_3:+9461641 | None:intergenic |
| GTAAAGTGGCTCCATGATAA+AGG | 0.427105 | 1_3:+9460430 | None:intergenic |
| GTGCTTTAGGTGGCACATAA+AGG | 0.430754 | 1_3:+9460377 | None:intergenic |
| TGGAACCAGCAAAGAACAAC+TGG | 0.432951 | 1_3:-9459511 | Msa0102600:CDS |
| GCGATGACAAACCTTTATCA+TGG | 0.434104 | 1_3:-9460441 | Msa0102600:CDS |
| TCTATTAGAGACCGAGGTAT+TGG | 0.436822 | 1_3:-9462136 | Msa0102600:CDS |
| TCCTTGCTGGGACGAAGAAT+GGG | 0.443401 | 1_3:+9463686 | None:intergenic |
| TCTTATCTTCATAATCCATC+AGG | 0.444687 | 1_3:+9459311 | None:intergenic |
| ATAGCAAAATCTGGAACTTC+AGG | 0.446829 | 1_3:-9462076 | Msa0102600:intron |
| CCGATTCAGATGTCGTTAAG+AGG | 0.451172 | 1_3:-9463262 | Msa0102600:intron |
| CAACGCCAAGCTTGAAATCC+AGG | 0.454983 | 1_3:-9462533 | Msa0102600:intron |
| TAAATGTTGGTTACCATTGG+AGG | 0.459116 | 1_3:+9458321 | None:intergenic |
| TAACTTCCCTATCTATATCT+GGG | 0.461417 | 1_3:-9460971 | Msa0102600:CDS |
| ATTTCTCGTGATACATTCAA+TGG | 0.461649 | 1_3:+9460114 | None:intergenic |
| CCAAGGAGGGTCTGAAACTC+GGG | 0.464941 | 1_3:-9459273 | Msa0102600:CDS |
| TTCTAAAGACAAGGAACTAA+AGG | 0.470485 | 1_3:-9459245 | Msa0102600:CDS |
| ACAAACCTGGATTTCAAGCT+TGG | 0.470570 | 1_3:+9462528 | None:intergenic |
| AAAACTGATCATTTATAAAG+TGG | 0.473699 | 1_3:+9458378 | None:intergenic |
| TACCTCGGTCTCTAATAGAT+AGG | 0.478724 | 1_3:+9462140 | None:intergenic |
| TCCAAGGAGGGTCTGAAACT+CGG | 0.480470 | 1_3:-9459274 | Msa0102600:CDS |
| CTAATTGGGCAATTTGGAGT+TGG | 0.481464 | 1_3:-9461926 | Msa0102600:CDS |
| GGAACTAAAGGAATCCTTCA+AGG | 0.484459 | 1_3:-9459233 | Msa0102600:CDS |
| CCCGGAGTTCCTTGATGATA+GGG | 0.484538 | 1_3:+9458996 | None:intergenic |
| GAGAAATTCTGCCAAAATTG+AGG | 0.484770 | 1_3:+9458162 | None:intergenic |
| TTTGGAAAATCCATTAAACT+TGG | 0.485636 | 1_3:-9459771 | Msa0102600:CDS |
| GGAAGATGAGACTGAAGTTG+AGG | 0.489120 | 1_3:-9458704 | Msa0102600:CDS |
| TTGCAATTTCAGAAGATACA+TGG | 0.492822 | 1_3:-9461702 | Msa0102600:CDS |
| CATCTTCACTTTCCTCCTTG+GGG | 0.498254 | 1_3:+9460745 | None:intergenic |
| CAAGCTTACGGATCATATCA+AGG | 0.500174 | 1_3:+9460037 | None:intergenic |
| GTGGTGATCTCAATCTAATT+GGG | 0.500326 | 1_3:-9461940 | Msa0102600:CDS |
| CTTCAAGAAATTGTTTAGTG+TGG | 0.500579 | 1_3:-9458097 | Msa0102600:three_prime_UTR |
| CTTTGTCAGTGGACTCGTCA+GGG | 0.500986 | 1_3:+9460004 | None:intergenic |
| GAGAGAATAAGAAGAGTGGA+AGG | 0.502061 | 1_3:+9463530 | None:intergenic |
| TGTCTTTATCAGTGAGGGAT+AGG | 0.504588 | 1_3:+9462572 | None:intergenic |
| TTCTTCAGACGCTCAAGGAA+TGG | 0.506178 | 1_3:+9459480 | None:intergenic |
| CCTCTTAACGACATCTGAAT+CGG | 0.507639 | 1_3:+9463262 | None:intergenic |
| CACAAGGAGTGTTATCCAAT+CGG | 0.507998 | 1_3:+9459146 | None:intergenic |
| CGACGAGTCTTCTGAGGAAG+AGG | 0.516292 | 1_3:-9460908 | Msa0102600:CDS |
| GACTCGTCGTCTTCATCAGC+GGG | 0.518353 | 1_3:+9460922 | None:intergenic |
| ATTTGGTTGGAGTGCAAACA+TGG | 0.519357 | 1_3:-9459107 | Msa0102600:CDS |
| CACTTTCGAAAAGTGCAGTC+TGG | 0.519596 | 1_3:+9458821 | None:intergenic |
| GGACGAAGAATGGGAGCGGT+TGG | 0.520764 | 1_3:+9463695 | None:intergenic |
| TGATAAACGATTTCTGTTGG+TGG | 0.522059 | 1_3:+9459734 | None:intergenic |
| CATCGACATTGTCATTTGCA+AGG | 0.523230 | 1_3:+9459185 | None:intergenic |
| TACATATCTAGAATGAAAGC+TGG | 0.527032 | 1_3:-9459558 | Msa0102600:CDS |
| TCATCAGCTTCATTTGAAGC+AGG | 0.530066 | 1_3:+9458655 | None:intergenic |
| CCCTATCATCAAGGAACTCC+GGG | 0.533736 | 1_3:-9458996 | Msa0102600:CDS |
| CATTAAACTTGGTATCATTG+AGG | 0.534100 | 1_3:-9459760 | Msa0102600:CDS |
| AAGAGAGAGAATAAGAAGAG+TGG | 0.534755 | 1_3:+9463526 | None:intergenic |
| TGTGCCACCTAAAGCACCTC+AGG | 0.535240 | 1_3:-9460371 | Msa0102600:CDS |
| TAAGGCAAAATTCCAACGGA+TGG | 0.535919 | 1_3:+9458494 | None:intergenic |
| GATGCAGATTAAGTTAGATA+AGG | 0.535990 | 1_3:-9462173 | Msa0102600:intron |
| CATCACCTTCAGCAGTAAAG+TGG | 0.538199 | 1_3:+9460416 | None:intergenic |
| CTGTCATTGCAATGAGGAAG+TGG | 0.538787 | 1_3:-9463559 | Msa0102600:exon |
| GTATGGGAATCTAAAGCTGA+TGG | 0.541849 | 1_3:-9461730 | Msa0102600:CDS |
| ACCCTATCATCAAGGAACTC+CGG | 0.542750 | 1_3:-9458997 | Msa0102600:CDS |
| ATACTCTTCCACGTACTCGC+TGG | 0.546272 | 1_3:+9461627 | None:intergenic |
| GGATGAGAGTGTGAAGCAAA+CGG | 0.547097 | 1_3:-9458857 | Msa0102600:CDS |
| AAGCATACATGCGCGGCAAG+AGG | 0.548258 | 1_3:-9459042 | Msa0102600:CDS |
| AAACTCGGTGCTGTTCCTCA+TGG | 0.549531 | 1_3:-9463293 | Msa0102600:CDS |
| TGGTGACATCAAAATTTGGT+TGG | 0.549849 | 1_3:-9459120 | Msa0102600:CDS |
| GGACTCGTCAGGGTCCTCTT+CGG | 0.550477 | 1_3:+9460014 | None:intergenic |
| ATCGACATTGTCATTTGCAA+GGG | 0.551505 | 1_3:+9459186 | None:intergenic |
| AGAAGAGGCCAGCGAGTACG+TGG | 0.552899 | 1_3:-9461635 | Msa0102600:CDS |
| TCCTGACGCAACAGTTGAAG+AGG | 0.553238 | 1_3:-9458725 | Msa0102600:CDS |
| AGCGGTTGGATTTGCCAGCA+TGG | 0.553288 | 1_3:+9463709 | None:intergenic |
| CAAAATGTCTTTATCAGTGA+GGG | 0.554638 | 1_3:+9462567 | None:intergenic |
| GATCCGTAAGCTTGCCGAAG+AGG | 0.555543 | 1_3:-9460028 | Msa0102600:CDS |
| AAACTGATCATTTATAAAGT+GGG | 0.556014 | 1_3:+9458379 | None:intergenic |
| TGCTTCCCCAGATATAGATA+GGG | 0.556945 | 1_3:+9460965 | None:intergenic |
| AGCATACATGCGCGGCAAGA+GGG | 0.557652 | 1_3:-9459041 | Msa0102600:CDS |
| TGTGAAGATATCCAACCGAT+TGG | 0.558827 | 1_3:-9459161 | Msa0102600:CDS |
| AGGAGTGTTATCCAATCGGT+TGG | 0.561154 | 1_3:+9459150 | None:intergenic |
| TGTGTGTGAATGAAGGGAAT+CGG | 0.561471 | 1_3:-9463161 | Msa0102600:intron |
| TAGAATGAAAGCTGGACAGA+AGG | 0.562025 | 1_3:-9459550 | Msa0102600:CDS |
| CACCGTCAGATCATCCATGC+TGG | 0.562122 | 1_3:-9463723 | Msa0102600:five_prime_UTR |
| GAAGTTCCAAAATGTGTCCA+AGG | 0.562529 | 1_3:-9459290 | Msa0102600:CDS |
| TCCACTGACAAAGAAAAGAA+AGG | 0.563357 | 1_3:-9459994 | Msa0102600:intron |
| TGGAGCCACTTTACTGCTGA+AGG | 0.565774 | 1_3:-9460421 | Msa0102600:CDS |
| GGTTCTTAACTACTCTCTCC+CGG | 0.565871 | 1_3:+9458978 | None:intergenic |
| TAAAATACACCTCAAAGAAG+AGG | 0.565903 | 1_3:-9461650 | Msa0102600:CDS |
| TGTCAATTTACCCTCAGACT+TGG | 0.566708 | 1_3:+9459593 | None:intergenic |
| TCCTTGATGATAGGGTGTCT+AGG | 0.566886 | 1_3:+9459004 | None:intergenic |
| CAATTTCTTGAAGTCTTATG+CGG | 0.568276 | 1_3:+9458107 | None:intergenic |
| AAGTTAAAGGACCCATCCGT+TGG | 0.569335 | 1_3:-9458506 | Msa0102600:three_prime_UTR |
| CGGGAAGGATTCTAAAGACA+AGG | 0.569516 | 1_3:-9459254 | Msa0102600:CDS |
| TATTTACAGCACCAAGTCTG+AGG | 0.569728 | 1_3:-9459604 | Msa0102600:intron |
| CTGATCATTTATAAAGTGGG+TGG | 0.571724 | 1_3:+9458382 | None:intergenic |
| TTGATCTAGTTGCTTCGACG+TGG | 0.572298 | 1_3:+9463785 | None:intergenic |
| TCCTAGACACCCTATCATCA+AGG | 0.573259 | 1_3:-9459005 | Msa0102600:CDS |
| TCTAACATACAACTTCAGGT+TGG | 0.576509 | 1_3:+9460315 | None:intergenic |
| ACTTCTCCGCATTACTGCGA+AGG | 0.578324 | 1_3:+9463119 | None:intergenic |
| ATCTCTGTTCCACGTCCTAG+TGG | 0.579957 | 1_3:+9461673 | None:intergenic |
| AATTTCTTGAAGTCTTATGC+GGG | 0.581132 | 1_3:+9458108 | None:intergenic |
| AAGTGTCACTATGTAATGGA+TGG | 0.581282 | 1_3:+9463824 | None:intergenic |
| TAAGACTAATGACTGTGCTA+AGG | 0.581922 | 1_3:+9458476 | None:intergenic |
| AGTAGTAGATCCACCAAAGG+TGG | 0.582933 | 1_3:-9463321 | Msa0102600:CDS |
| GGAACTCTTAAATGATGTGA+AGG | 0.585981 | 1_3:-9460649 | Msa0102600:CDS |
| AGTTAAGTGTCACTATGTAA+TGG | 0.586627 | 1_3:+9463820 | None:intergenic |
| GATGATCTGACGGTGAAGGA+TGG | 0.591626 | 1_3:+9463731 | None:intergenic |
| TCTGAATTTCAGGTATGTAT+GGG | 0.592578 | 1_3:-9461746 | Msa0102600:intron |
| TCAAGGATCTAACTAAGTGG+TGG | 0.593513 | 1_3:-9459216 | Msa0102600:CDS |
| AAGGCAAAATTCCAACGGAT+GGG | 0.594736 | 1_3:+9458495 | None:intergenic |
| CTTCTCCGCATTACTGCGAA+GGG | 0.594891 | 1_3:+9463120 | None:intergenic |
| TGCTTCAAATGAAGCTGATG+AGG | 0.599063 | 1_3:-9458653 | Msa0102600:CDS |
| ATTCTACCACTCTCTTGCCA+AGG | 0.602333 | 1_3:-9460577 | Msa0102600:intron |
| TTCCAAAATGTGTCCAAGGA+GGG | 0.604051 | 1_3:-9459286 | Msa0102600:CDS |
| AAATTTCAAGCGAATGCGGA+AGG | 0.606036 | 1_3:-9463356 | Msa0102600:CDS |
| CATTTGAAATCAGTTCCCTA+AGG | 0.606114 | 1_3:+9463023 | None:intergenic |
| AGACTCGTCGTCTTCATCAG+CGG | 0.606434 | 1_3:+9460921 | None:intergenic |
| TTTGATGTCACCACTACACA+AGG | 0.606525 | 1_3:+9459130 | None:intergenic |
| GGGAAGCAAAGAGGTTGATG+TGG | 0.608554 | 1_3:-9460950 | Msa0102600:CDS |
| TGAAGACGACGAGTCTTCTG+AGG | 0.608975 | 1_3:-9460914 | Msa0102600:CDS |
| CAGTGCAAACAATTTCGAGA+AGG | 0.609135 | 1_3:+9463579 | None:intergenic |
| AAATGACGATGGTGATGTCA+AGG | 0.609943 | 1_3:-9458629 | Msa0102600:CDS |
| AAGCAAAGAGGTTGATGTGG+AGG | 0.610301 | 1_3:-9460947 | Msa0102600:CDS |
| ATACTTGATGCAATACCTGA+TGG | 0.612459 | 1_3:-9459326 | Msa0102600:CDS |
| GCCTAAAACAAAGACAGTGA+AGG | 0.613840 | 1_3:-9460688 | Msa0102600:CDS |
| TCCCATTCTTCGTCCCAGCA+AGG | 0.614137 | 1_3:-9463687 | Msa0102600:five_prime_UTR |
| CCTTCAAGGATCTAACTAAG+TGG | 0.614149 | 1_3:-9459219 | Msa0102600:CDS |
| ATTTACAGCACCAAGTCTGA+GGG | 0.614924 | 1_3:-9459603 | Msa0102600:intron |
| GAATCCAAAGGAGGTTACAG+AGG | 0.616769 | 1_3:-9460613 | Msa0102600:CDS |
| GAGATCCCTTCGCAGTAATG+CGG | 0.618086 | 1_3:-9463125 | Msa0102600:CDS |
| AACTTCCCTATCTATATCTG+GGG | 0.620396 | 1_3:-9460970 | Msa0102600:CDS |
| GAAATTCTGAGTCGTCCATG+TGG | 0.626749 | 1_3:-9463849 | Msa0102600:five_prime_UTR |
| AAGCTTACGGATCATATCAA+GGG | 0.627367 | 1_3:+9460038 | None:intergenic |
| TGGAATGAACCACTAGGACG+TGG | 0.627795 | 1_3:-9461682 | Msa0102600:CDS |
| GCTGGGACGAAGAATGGGAG+CGG | 0.628382 | 1_3:+9463691 | None:intergenic |
| TCTCTTCTCATCAACATCAG+AGG | 0.630151 | 1_3:+9459821 | None:intergenic |
| CATGGATGATCTGACGGTGA+AGG | 0.630554 | 1_3:+9463727 | None:intergenic |
| ATCCTATCTATTAGAGACCG+AGG | 0.630589 | 1_3:-9462142 | Msa0102600:CDS |
| ATGTAATGGATGGACCCACA+TGG | 0.632498 | 1_3:+9463834 | None:intergenic |
| CTATATCTGGGGAAGCAAAG+AGG | 0.633804 | 1_3:-9460959 | Msa0102600:CDS |
| ATGTGAAGGCTATATGGCTG+AGG | 0.634531 | 1_3:-9460635 | Msa0102600:CDS |
| TGCCAGCATGGATGATCTGA+CGG | 0.635605 | 1_3:+9463721 | None:intergenic |
| ATGATCTGACGGTGAAGGAT+GGG | 0.635912 | 1_3:+9463732 | None:intergenic |
| GTTGAGAAAATGCAGACAAG+TGG | 0.638859 | 1_3:-9461959 | Msa0102600:CDS |
| AAGTCCTGAGGTGCTTTAGG+TGG | 0.640658 | 1_3:+9460367 | None:intergenic |
| TCAATCAGCTGAAAGCCCCA+AGG | 0.640725 | 1_3:-9460760 | Msa0102600:intron |
| TCTGATGTTGATGAGAAGAG+AGG | 0.646244 | 1_3:-9459819 | Msa0102600:CDS |
| CCGAGGTATTGGTATGACAA+AGG | 0.646958 | 1_3:-9462125 | Msa0102600:CDS |
| ATATTACCTTGGCAAGAGAG+TGG | 0.647445 | 1_3:+9460571 | None:intergenic |
| CCAAAATGTCTTTATCAGTG+AGG | 0.650976 | 1_3:+9462566 | None:intergenic |
| GTGCTAAGGCAAAATTCCAA+CGG | 0.652675 | 1_3:+9458490 | None:intergenic |
| AAATTCTGAGTCGTCCATGT+GGG | 0.655828 | 1_3:-9463848 | Msa0102600:five_prime_UTR |
| GCATCAAGTATTCATCAACT+GGG | 0.657313 | 1_3:+9459338 | None:intergenic |
| CCTTTGTCATACCAATACCT+CGG | 0.658172 | 1_3:+9462125 | None:intergenic |
| TGAAGGAAACGACTTACGAG+TGG | 0.661856 | 1_3:-9460671 | Msa0102600:CDS |
| GTTCCAAAATGTGTCCAAGG+AGG | 0.663752 | 1_3:-9459287 | Msa0102600:CDS |
| GAAGGAAACGACTTACGAGT+GGG | 0.669364 | 1_3:-9460670 | Msa0102600:CDS |
| GGATAACACTCCTTGTGTAG+TGG | 0.678484 | 1_3:-9459140 | Msa0102600:CDS |
| GCAAAGTGTCAGAATCAACA+AGG | 0.678755 | 1_3:+9460136 | None:intergenic |
| AGGTATTGGTATGACAAAGG+AGG | 0.684577 | 1_3:-9462122 | Msa0102600:CDS |
| GGAGGGTCTGAAACTCGGGA+AGG | 0.685274 | 1_3:-9459269 | Msa0102600:CDS |
| GATACATGGAATGAACCACT+AGG | 0.687380 | 1_3:-9461688 | Msa0102600:CDS |
| TAACTCTCGTACAAGTCCTG+AGG | 0.691370 | 1_3:+9460355 | None:intergenic |
| ATCAGCTGAAAGCCCCAAGG+AGG | 0.696234 | 1_3:-9460757 | Msa0102600:intron |
| TGAAGTAGTAGATCCACCAA+AGG | 0.698044 | 1_3:-9463324 | Msa0102600:CDS |
| ATGGCTGAGGAATCCAAAGG+AGG | 0.701467 | 1_3:-9460622 | Msa0102600:CDS |
| TTTGCACTGTCATTGCAATG+AGG | 0.716182 | 1_3:-9463565 | Msa0102600:exon |
| GAATCGGTTGAAAGTCCATG+AGG | 0.719230 | 1_3:+9463278 | None:intergenic |
| TATATGGCTGAGGAATCCAA+AGG | 0.735087 | 1_3:-9460625 | Msa0102600:CDS |
| GCTGATGAGGTAAATGACGA+TGG | 0.743848 | 1_3:-9458640 | Msa0102600:CDS |
| GAGAGTAGTTAAGAACCCTG+AGG | 0.757743 | 1_3:-9458972 | Msa0102600:intron |
| AGGATGGGTTTAGTGCAACG+TGG | 0.776739 | 1_3:+9463747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTTATCTAAAAA+AGG | - | chr1_3:9459671-9459690 | Msa0102600:intron | 10.0% |
| !!! | TTGATTAGTTAAATTGATTA+TGG | - | chr1_3:9458986-9459005 | Msa0102600:CDS | 15.0% |
| !! | TATAATTAAAGTGATAGTTT+GGG | + | chr1_3:9460301-9460320 | None:intergenic | 15.0% |
| !! | TTATAATTAAAGTGATAGTT+TGG | + | chr1_3:9460302-9460321 | None:intergenic | 15.0% |
| !! | ATACAATATACATAATAAGT+AGG | - | chr1_3:9460615-9460634 | Msa0102600:CDS | 15.0% |
| !! | TACAATATACATAATAAGTA+GGG | - | chr1_3:9460616-9460635 | Msa0102600:CDS | 15.0% |
| !!! | ATCTATTTTCAATATACAAT+TGG | - | chr1_3:9460823-9460842 | Msa0102600:intron | 15.0% |
| !! | ATACAAGTATGTATAATTTA+AGG | - | chr1_3:9461002-9461021 | Msa0102600:CDS | 15.0% |
| !!! | TTGATAATACTTATAATGTT+GGG | - | chr1_3:9461400-9461419 | Msa0102600:intron | 15.0% |
| !! | CAATAAAAAAGAAACTTATT+AGG | - | chr1_3:9461822-9461841 | Msa0102600:intron | 15.0% |
| !!! | ACTATTTTTGACAAAAATTA+AGG | + | chr1_3:9463473-9463492 | None:intergenic | 15.0% |
| !!! | TAATAAGGATATTTTCCTTA+GGG | - | chr1_3:9458849-9458868 | Msa0102600:CDS | 20.0% |
| !! | ATGTACAAATTATAAATGCA+AGG | + | chr1_3:9459232-9459251 | None:intergenic | 20.0% |
| !!! | TGTTTTAATGCTGTTTTAAT+GGG | - | chr1_3:9459469-9459488 | Msa0102600:CDS | 20.0% |
| !!! | TGTTTTAATGGGTTTATTTT+TGG | - | chr1_3:9459480-9459499 | Msa0102600:CDS | 20.0% |
| !!! | CTTAACTTGTAAAACTATTT+GGG | - | chr1_3:9459530-9459549 | Msa0102600:CDS | 20.0% |
| !!! | TTCAGGTATGTATATATTTT+TGG | - | chr1_3:9459828-9459847 | Msa0102600:CDS | 20.0% |
| !!! | TCAGGTATGTATATATTTTT+GGG | - | chr1_3:9459829-9459848 | Msa0102600:CDS | 20.0% |
| !! | ATAATTAAAGTGATAGTTTG+GGG | + | chr1_3:9460300-9460319 | None:intergenic | 20.0% |
| !! | ACTATCACTTTAATTATAAC+CGG | - | chr1_3:9460303-9460322 | Msa0102600:CDS | 20.0% |
| !! | AAGGTTATAAATCAAATTTG+TGG | - | chr1_3:9460500-9460519 | Msa0102600:intron | 20.0% |
| !! | ACAATATACATAATAAGTAG+GGG | - | chr1_3:9460617-9460636 | Msa0102600:CDS | 20.0% |
| !! | GGTTAAATTAAATTATCACA+GGG | - | chr1_3:9460687-9460706 | Msa0102600:CDS | 20.0% |
| !!! | CTTGATAATACTTATAATGT+TGG | - | chr1_3:9461399-9461418 | Msa0102600:intron | 20.0% |
| !! | TGATAATACTTATAATGTTG+GGG | - | chr1_3:9461401-9461420 | Msa0102600:intron | 20.0% |
| !!! | TTCTTAACAAATGTTCTTTT+TGG | - | chr1_3:9461714-9461733 | Msa0102600:CDS | 20.0% |
| !!! | TTTTTTTCAATATATGCTAC+AGG | - | chr1_3:9462510-9462529 | Msa0102600:intron | 20.0% |
| !! | ATGTTGAAGACATAAAATAA+GGG | + | chr1_3:9462971-9462990 | None:intergenic | 20.0% |
| !! | TATGTTGAAGACATAAAATA+AGG | + | chr1_3:9462972-9462991 | None:intergenic | 20.0% |
| !! | AAACTGATCATTTATAAAGT+GGG | + | chr1_3:9463511-9463530 | None:intergenic | 20.0% |
| !! | AAAACTGATCATTTATAAAG+TGG | + | chr1_3:9463512-9463531 | None:intergenic | 20.0% |
| !!! | GATCAGTTTTTTTTTTTTAG+AGG | - | chr1_3:9463522-9463541 | Msa0102600:CDS | 20.0% |
| !! | AACACAATGTTTATCAAATT+TGG | + | chr1_3:9463607-9463626 | None:intergenic | 20.0% |
| !! | TAACTGAAAATTTGTTCGTT+AGG | - | chr1_3:9458504-9458523 | Msa0102600:three_prime_UTR | 25.0% |
| ! | CAATTCACTTTACAGTAATA+AGG | - | chr1_3:9458834-9458853 | Msa0102600:CDS | 25.0% |
| !! | GTAATAAGGATATTTTCCTT+AGG | - | chr1_3:9458848-9458867 | Msa0102600:CDS | 25.0% |
| !!! | CAAGTTAGAATTGATTTTGA+AGG | - | chr1_3:9459096-9459115 | Msa0102600:CDS | 25.0% |
| !! | AATTGATTTACATGTTTGGT+TGG | + | chr1_3:9459147-9459166 | None:intergenic | 25.0% |
| !! | GTAGAATTGATTTACATGTT+TGG | + | chr1_3:9459151-9459170 | None:intergenic | 25.0% |
| !! | TAAATCAATTCTACGCTTTT+AGG | - | chr1_3:9459157-9459176 | Msa0102600:CDS | 25.0% |
| !! | GGATTTTCAAAGTATATGTT+TGG | + | chr1_3:9459211-9459230 | None:intergenic | 25.0% |
| ! | ACAAATGAGTTCTATATTGT+AGG | - | chr1_3:9459273-9459292 | Msa0102600:CDS | 25.0% |
| ! | ACAATTAAAGTATACAAACC+TGG | + | chr1_3:9459375-9459394 | None:intergenic | 25.0% |
| !!! | CTGTAGGTTTTTTAATGATA+AGG | - | chr1_3:9459431-9459450 | Msa0102600:intron | 25.0% |
| ! | ATTAAAACACCATCATTCTT+TGG | + | chr1_3:9459458-9459477 | None:intergenic | 25.0% |
| !!! | GTGTTTTAATGCTGTTTTAA+TGG | - | chr1_3:9459468-9459487 | Msa0102600:CDS | 25.0% |
| ! | GCTTATATGAACTTATCTAT+TGG | - | chr1_3:9459507-9459526 | Msa0102600:CDS | 25.0% |
| !!! | GCTTAACTTGTAAAACTATT+TGG | - | chr1_3:9459529-9459548 | Msa0102600:CDS | 25.0% |
| ! | GAGGATTTAGTAAAGAATTT+GGG | - | chr1_3:9459784-9459803 | Msa0102600:CDS | 25.0% |
| !!! | CAGGTATGTATATATTTTTG+GGG | - | chr1_3:9459830-9459849 | Msa0102600:CDS | 25.0% |
| !!! | CTTGAAATTGCTTTTTTGAT+TGG | - | chr1_3:9460064-9460083 | Msa0102600:CDS | 25.0% |
| ! | AGATCATTTCCAAAATCAAT+AGG | + | chr1_3:9460124-9460143 | None:intergenic | 25.0% |
| !!! | TGATTTTAAAATCAAGCAAC+CGG | + | chr1_3:9460325-9460344 | None:intergenic | 25.0% |
| ! | TTGTTCATGCTTAAGAATAT+AGG | - | chr1_3:9460469-9460488 | Msa0102600:intron | 25.0% |
| ! | CAATATACATAATAAGTAGG+GGG | - | chr1_3:9460618-9460637 | Msa0102600:CDS | 25.0% |
| ! | GGGTTAAATTAAATTATCAC+AGG | - | chr1_3:9460686-9460705 | Msa0102600:CDS | 25.0% |
| ! | AAACTTCAAGAAACATAGTT+AGG | + | chr1_3:9460739-9460758 | None:intergenic | 25.0% |
| ! | GTTTCTTGAAGTTTAAAAGA+TGG | - | chr1_3:9460745-9460764 | Msa0102600:CDS | 25.0% |
| !!! | TAATAACTTCTGTTTTTCAC+AGG | - | chr1_3:9460865-9460884 | Msa0102600:intron | 25.0% |
| ! | GTATAATTTAAGGATTCAGT+TGG | - | chr1_3:9461012-9461031 | Msa0102600:intron | 25.0% |
| ! | ATATCTATATATGTTCCGTT+GGG | + | chr1_3:9461364-9461383 | None:intergenic | 25.0% |
| !!! | ATATAGATATCCACTTTTCT+CGG | - | chr1_3:9461374-9461393 | Msa0102600:intron | 25.0% |
| !! | CAAGAATCCTAATTCTTTTA+TGG | - | chr1_3:9461946-9461965 | Msa0102600:CDS | 25.0% |
| ! | TGAGAAACCATAAAAGAATT+AGG | + | chr1_3:9461956-9461975 | None:intergenic | 25.0% |
| ! | TTCTGCATCAAAAGTTAAAT+TGG | + | chr1_3:9462039-9462058 | None:intergenic | 25.0% |
| ! | TTTGGAAAATCCATTAAACT+TGG | - | chr1_3:9462116-9462135 | Msa0102600:CDS | 25.0% |
| !! | TTTTGATAAACGATTTCTGT+TGG | + | chr1_3:9462159-9462178 | None:intergenic | 25.0% |
| ! | CCTATAAGAGTTAAATAACA+AGG | + | chr1_3:9462212-9462231 | None:intergenic | 25.0% |
| !!! | CCTTGTTATTTAACTCTTAT+AGG | - | chr1_3:9462209-9462228 | Msa0102600:intron | 25.0% |
| ! | ACATTGTTAACTGATGAAAT+GGG | + | chr1_3:9462246-9462265 | None:intergenic | 25.0% |
| ! | TACATTGTTAACTGATGAAA+TGG | + | chr1_3:9462247-9462266 | None:intergenic | 25.0% |
| !! | AAGGATATCTTTTACATAAC+TGG | - | chr1_3:9462356-9462375 | Msa0102600:intron | 25.0% |
| !! | TTTTATGTCTTCAACATAGT+TGG | - | chr1_3:9462974-9462993 | Msa0102600:intron | 25.0% |
| ! | TTTATGTCTTCAACATAGTT+GGG | - | chr1_3:9462975-9462994 | Msa0102600:intron | 25.0% |
| !! | ATTCTAGAAGCAAAATCTTT+GGG | + | chr1_3:9463109-9463128 | None:intergenic | 25.0% |
| !! | AATTCTAGAAGCAAAATCTT+TGG | + | chr1_3:9463110-9463129 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTCGTAAGTTAA+AGG | - | chr1_3:9463368-9463387 | Msa0102600:intron | 25.0% |
| !!! | TTTTAAATGTTGGTTACCAT+TGG | + | chr1_3:9463572-9463591 | None:intergenic | 25.0% |
| !! | TTGCAATGCATTTTAAATGT+TGG | + | chr1_3:9463582-9463601 | None:intergenic | 25.0% |
| !! | ATGATAGATGTTTTATAGCT+GGG | + | chr1_3:9463636-9463655 | None:intergenic | 25.0% |
| ! | AGTTAAGTGTCACTATGTAA+TGG | + | chr1_3:9458070-9458089 | None:intergenic | 30.0% |
| ATATACTCTCTCTTTGTTAC+TGG | + | chr1_3:9458232-9458251 | None:intergenic | 30.0% | |
| TCAAAAATTTCAAGCGAATG+CGG | - | chr1_3:9458527-9458546 | Msa0102600:three_prime_UTR | 30.0% | |
| ATTGAAATGTGTGTGAATGA+AGG | - | chr1_3:9458719-9458738 | Msa0102600:CDS | 30.0% | |
| TTGAAATGTGTGTGAATGAA+GGG | - | chr1_3:9458720-9458739 | Msa0102600:CDS | 30.0% | |
| !!! | GTACGTTTTGAGTTTTGAAT+CGG | - | chr1_3:9458935-9458954 | Msa0102600:intron | 30.0% |
| GAAGTTAGAATGAAAAGCTT+TGG | + | chr1_3:9459077-9459096 | None:intergenic | 30.0% | |
| CAAAATGTCTTTATCAGTGA+GGG | + | chr1_3:9459323-9459342 | None:intergenic | 30.0% | |
| ! | CTCACTGATAAAGACATTTT+GGG | - | chr1_3:9459322-9459341 | Msa0102600:CDS | 30.0% |
| !! | GTTAATTAGTTTGTCTCTGT+AGG | - | chr1_3:9459415-9459434 | Msa0102600:intron | 30.0% |
| !!! | TAATGGGTTTATTTTTGGAC+TGG | - | chr1_3:9459485-9459504 | Msa0102600:CDS | 30.0% |
| AAGCTATCATGGAAAACTTA+TGG | + | chr1_3:9459595-9459614 | None:intergenic | 30.0% | |
| ! | GTTTTCACATAAGCTATAAG+TGG | + | chr1_3:9459625-9459644 | None:intergenic | 30.0% |
| GATGCAGATTAAGTTAGATA+AGG | - | chr1_3:9459714-9459733 | Msa0102600:CDS | 30.0% | |
| GGAGGATTTAGTAAAGAATT+TGG | - | chr1_3:9459783-9459802 | Msa0102600:CDS | 30.0% | |
| TTGGAAATGATCTGAATTTC+AGG | - | chr1_3:9460131-9460150 | Msa0102600:CDS | 30.0% | |
| ! | ATCTGAATTTCAGGTATGTA+TGG | - | chr1_3:9460140-9460159 | Msa0102600:CDS | 30.0% |
| ! | TCTGAATTTCAGGTATGTAT+GGG | - | chr1_3:9460141-9460160 | Msa0102600:CDS | 30.0% |
| TTGCAATTTCAGAAGATACA+TGG | - | chr1_3:9460185-9460204 | Msa0102600:intron | 30.0% | |
| TAAAATACACCTCAAAGAAG+AGG | - | chr1_3:9460237-9460256 | Msa0102600:intron | 30.0% | |
| !!! | AGTTCTTATTTTTCTCTCCA+TGG | - | chr1_3:9460375-9460394 | Msa0102600:CDS | 30.0% |
| !!! | GTTCTTATTTTTCTCTCCAT+GGG | - | chr1_3:9460376-9460395 | Msa0102600:CDS | 30.0% |
| GTTAAACTAAATGATACCCA+TGG | + | chr1_3:9460395-9460414 | None:intergenic | 30.0% | |
| AAGAATATAGGTGTTCTTGA+AGG | - | chr1_3:9460481-9460500 | Msa0102600:intron | 30.0% | |
| TTATAGCTTCTTTAACTCTC+TGG | - | chr1_3:9460527-9460546 | Msa0102600:intron | 30.0% | |
| CTTAGAAGGTAAACTCTTAT+GGG | - | chr1_3:9460666-9460685 | Msa0102600:CDS | 30.0% | |
| TTAAATTATCACAGGGTGAT+TGG | - | chr1_3:9460694-9460713 | Msa0102600:CDS | 30.0% | |
| ! | AATTGGTCTATTGCTAAATC+TGG | - | chr1_3:9460840-9460859 | Msa0102600:intron | 30.0% |
| TTAACTTCCCTATCTATATC+TGG | - | chr1_3:9460915-9460934 | Msa0102600:CDS | 30.0% | |
| TAACTTCCCTATCTATATCT+GGG | - | chr1_3:9460916-9460935 | Msa0102600:CDS | 30.0% | |
| GCTGATTGAAGAGTAAAATA+TGG | + | chr1_3:9461116-9461135 | None:intergenic | 30.0% | |
| TAAATGATGTGAAGGCTATA+TGG | - | chr1_3:9461246-9461265 | Msa0102600:intron | 30.0% | |
| ACTATTTATGTGATACCCAA+CGG | - | chr1_3:9461346-9461365 | Msa0102600:intron | 30.0% | |
| GATATCTATATATGTTCCGT+TGG | + | chr1_3:9461365-9461384 | None:intergenic | 30.0% | |
| CTCAAAAAGCTCAAATACTT+GGG | + | chr1_3:9461634-9461653 | None:intergenic | 30.0% | |
| ACTCAAAAAGCTCAAATACT+TGG | + | chr1_3:9461635-9461654 | None:intergenic | 30.0% | |
| !! | ACAAATGTTCTTTTTGGCAT+TGG | - | chr1_3:9461720-9461739 | Msa0102600:CDS | 30.0% |
| !! | CAAATGTTCTTTTTGGCATT+GGG | - | chr1_3:9461721-9461740 | Msa0102600:CDS | 30.0% |
| ATTTCTCGTGATACATTCAA+TGG | + | chr1_3:9461776-9461795 | None:intergenic | 30.0% | |
| TGACAAAGAAAAGAAAGGTA+TGG | - | chr1_3:9461898-9461917 | Msa0102600:CDS | 30.0% | |
| CTCAATGATACCAAGTTTAA+TGG | + | chr1_3:9462129-9462148 | None:intergenic | 30.0% | |
| CATTAAACTTGGTATCATTG+AGG | - | chr1_3:9462127-9462146 | Msa0102600:CDS | 30.0% | |
| CATTGTTAACTGATGAAATG+GGG | + | chr1_3:9462245-9462264 | None:intergenic | 30.0% | |
| ! | TTAACAATGTAGCTGATTCT+TGG | - | chr1_3:9462256-9462275 | Msa0102600:intron | 30.0% |
| ! | TACATATCTAGAATGAAAGC+TGG | - | chr1_3:9462329-9462348 | Msa0102600:intron | 30.0% |
| TCTGAAGAAGAAAAACTTTG+AGG | - | chr1_3:9462421-9462440 | Msa0102600:intron | 30.0% | |
| TCTTATCTTCATAATCCATC+AGG | + | chr1_3:9462579-9462598 | None:intergenic | 30.0% | |
| ! | TTCTAAAGACAAGGAACTAA+AGG | - | chr1_3:9462642-9462661 | Msa0102600:intron | 30.0% |
| ! | CAAATTTAGAATGTACCTCA+GGG | + | chr1_3:9462933-9462952 | None:intergenic | 30.0% |
| ! | TCAAATTTAGAATGTACCTC+AGG | + | chr1_3:9462934-9462953 | None:intergenic | 30.0% |
| !!! | TTTTTTACTCATGTTGCTGT+CGG | - | chr1_3:9463306-9463325 | Msa0102600:CDS | 30.0% |
| ! | CATGATAGATGTTTTATAGC+TGG | + | chr1_3:9463637-9463656 | None:intergenic | 30.0% |
| ! | AATTTCTTGAAGTCTTATGC+GGG | + | chr1_3:9463782-9463801 | None:intergenic | 30.0% |
| ! | CAATTTCTTGAAGTCTTATG+CGG | + | chr1_3:9463783-9463802 | None:intergenic | 30.0% |
| CTTCAAGAAATTGTTTAGTG+TGG | - | chr1_3:9463790-9463809 | Msa0102600:five_prime_UTR | 30.0% | |
| ! | AAGTGTCACTATGTAATGGA+TGG | + | chr1_3:9458066-9458085 | None:intergenic | 35.0% |
| ! | TTACTGGAATTTTCCTTGCT+GGG | + | chr1_3:9458216-9458235 | None:intergenic | 35.0% |
| AAGAGAGAGAATAAGAAGAG+TGG | + | chr1_3:9458364-9458383 | None:intergenic | 35.0% | |
| AGTTTCAAGCTGAAGTTTCA+AGG | - | chr1_3:9458794-9458813 | Msa0102600:CDS | 35.0% | |
| ! | CATTTGAAATCAGTTCCCTA+AGG | + | chr1_3:9458867-9458886 | None:intergenic | 35.0% |
| ! | TATATGTTTGGTTCCACTTC+GGG | + | chr1_3:9459199-9459218 | None:intergenic | 35.0% |
| ! | GTATATGTTTGGTTCCACTT+CGG | + | chr1_3:9459200-9459219 | None:intergenic | 35.0% |
| GAGTTCTATATTGTAGGCAT+TGG | - | chr1_3:9459279-9459298 | Msa0102600:CDS | 35.0% | |
| CCAAAATGTCTTTATCAGTG+AGG | + | chr1_3:9459324-9459343 | None:intergenic | 35.0% | |
| ! | CCTCACTGATAAAGACATTT+TGG | - | chr1_3:9459321-9459340 | Msa0102600:CDS | 35.0% |
| !! | GATAAAGACATTTTGGGTGA+AGG | - | chr1_3:9459328-9459347 | Msa0102600:CDS | 35.0% |
| TGATAAGGACCAAAGAATGA+TGG | - | chr1_3:9459446-9459465 | Msa0102600:intron | 35.0% | |
| ! | GTGGTTTTCATAAGCTATCA+TGG | + | chr1_3:9459606-9459625 | None:intergenic | 35.0% |
| ! | TGAAGTTCCAGATTTTGCTA+TGG | + | chr1_3:9459812-9459831 | None:intergenic | 35.0% |
| ! | ATAGCAAAATCTGGAACTTC+AGG | - | chr1_3:9459811-9459830 | Msa0102600:CDS | 35.0% |
| !! | CTGGTGTGAAGGATTTTAAT+TGG | - | chr1_3:9459882-9459901 | Msa0102600:intron | 35.0% |
| AGTGGTGATCTCAATCTAAT+TGG | - | chr1_3:9459946-9459965 | Msa0102600:intron | 35.0% | |
| GTGGTGATCTCAATCTAATT+GGG | - | chr1_3:9459947-9459966 | Msa0102600:intron | 35.0% | |
| CTCAATCTAATTGGGCAATT+TGG | - | chr1_3:9459955-9459974 | Msa0102600:intron | 35.0% | |
| !!! | CTTTTTTGATTGGTATGTCG+CGG | - | chr1_3:9460074-9460093 | Msa0102600:CDS | 35.0% |
| !!! | TTATGCCAGCCTATTGATTT+TGG | - | chr1_3:9460112-9460131 | Msa0102600:CDS | 35.0% |
| CATTTCCAAAATCAATAGGC+TGG | + | chr1_3:9460120-9460139 | None:intergenic | 35.0% | |
| CTTAAGCATGAACAAAGTGT+AGG | + | chr1_3:9460464-9460483 | None:intergenic | 35.0% | |
| CCATAAGAGTTTACCTTCTA+AGG | + | chr1_3:9460668-9460687 | None:intergenic | 35.0% | |
| CCTTAGAAGGTAAACTCTTA+TGG | - | chr1_3:9460665-9460684 | Msa0102600:CDS | 35.0% | |
| !! | CTTCTGTTTTTCACAGGAAT+TGG | - | chr1_3:9460871-9460890 | Msa0102600:intron | 35.0% |
| AACTTCCCTATCTATATCTG+GGG | - | chr1_3:9460917-9460936 | Msa0102600:CDS | 35.0% | |
| !!! | TCCTTCACTGTCTTTGTTTT+AGG | + | chr1_3:9461203-9461222 | None:intergenic | 35.0% |
| GGAACTCTTAAATGATGTGA+AGG | - | chr1_3:9461238-9461257 | Msa0102600:intron | 35.0% | |
| TAGTGATGGCAATATTACCT+TGG | + | chr1_3:9461330-9461349 | None:intergenic | 35.0% | |
| GGGTATCACATAAATAGTGA+TGG | + | chr1_3:9461344-9461363 | None:intergenic | 35.0% | |
| TCTAACATACAACTTCAGGT+TGG | + | chr1_3:9461575-9461594 | None:intergenic | 35.0% | |
| AAGCTTACGGATCATATCAA+GGG | + | chr1_3:9461852-9461871 | None:intergenic | 35.0% | |
| TCCACTGACAAAGAAAAGAA+AGG | - | chr1_3:9461893-9461912 | Msa0102600:CDS | 35.0% | |
| ! | ACCTTTCTTTTCTTTGTCAG+TGG | + | chr1_3:9461897-9461916 | None:intergenic | 35.0% |
| TGATAAACGATTTCTGTTGG+TGG | + | chr1_3:9462156-9462175 | None:intergenic | 35.0% | |
| ! | ATTTTCCAGTTGTTCTTTGC+TGG | + | chr1_3:9462384-9462403 | None:intergenic | 35.0% |
| GCATCAAGTATTCATCAACT+GGG | + | chr1_3:9462552-9462571 | None:intergenic | 35.0% | |
| TGCATCAAGTATTCATCAAC+TGG | + | chr1_3:9462553-9462572 | None:intergenic | 35.0% | |
| ATACTTGATGCAATACCTGA+TGG | - | chr1_3:9462561-9462580 | Msa0102600:CDS | 35.0% | |
| ! | ATCGACATTGTCATTTGCAA+GGG | + | chr1_3:9462704-9462723 | None:intergenic | 35.0% |
| GTAGTGGTGACATCAAAATT+TGG | - | chr1_3:9462763-9462782 | Msa0102600:intron | 35.0% | |
| TGGTGACATCAAAATTTGGT+TGG | - | chr1_3:9462767-9462786 | Msa0102600:intron | 35.0% | |
| ! | TTCAACATAGTTGGGCTTTT+TGG | - | chr1_3:9462983-9463002 | Msa0102600:intron | 35.0% |
| !!! | GGCTTTTTGGTTTACTCAAT+TGG | - | chr1_3:9462996-9463015 | Msa0102600:intron | 35.0% |
| !! | ACTCAATTGGCTTACTTTTC+AGG | - | chr1_3:9463009-9463028 | Msa0102600:intron | 35.0% |
| TAAGACTAATGACTGTGCTA+AGG | + | chr1_3:9463414-9463433 | None:intergenic | 35.0% | |
| CTGATCATTTATAAAGTGGG+TGG | + | chr1_3:9463508-9463527 | None:intergenic | 35.0% | |
| ! | TAAATGTTGGTTACCATTGG+AGG | + | chr1_3:9463569-9463588 | None:intergenic | 35.0% |
| !! | CAATATTGCTTTTCGTACTG+CGG | + | chr1_3:9463680-9463699 | None:intergenic | 35.0% |
| ! | ACTACTACTGTCCTCAATTT+TGG | - | chr1_3:9463714-9463733 | Msa0102600:five_prime_UTR | 35.0% |
| GAGAAATTCTGCCAAAATTG+AGG | + | chr1_3:9463728-9463747 | None:intergenic | 35.0% | |
| AAATTCTGAGTCGTCCATGT+GGG | - | chr1_3:9458039-9458058 | Msa0102600:three_prime_UTR | 40.0% | |
| ! | GTTACTGGAATTTTCCTTGC+TGG | + | chr1_3:9458217-9458236 | None:intergenic | 40.0% |
| ! | GAAGGTTCTAACAGAACGTT+TGG | + | chr1_3:9458293-9458312 | None:intergenic | 40.0% |
| CAGTGCAAACAATTTCGAGA+AGG | + | chr1_3:9458311-9458330 | None:intergenic | 40.0% | |
| TTTGCACTGTCATTGCAATG+AGG | - | chr1_3:9458322-9458341 | Msa0102600:three_prime_UTR | 40.0% | |
| GAGAGAATAAGAAGAGTGGA+AGG | + | chr1_3:9458360-9458379 | None:intergenic | 40.0% | |
| AAATTTCAAGCGAATGCGGA+AGG | - | chr1_3:9458531-9458550 | Msa0102600:three_prime_UTR | 40.0% | |
| TGAAGTAGTAGATCCACCAA+AGG | - | chr1_3:9458563-9458582 | Msa0102600:three_prime_UTR | 40.0% | |
| ! | AGTTTTTCTTCCACCTTTGG+TGG | + | chr1_3:9458579-9458598 | None:intergenic | 40.0% |
| CCAAAGGTGGAAGAAAAACT+CGG | - | chr1_3:9458579-9458598 | Msa0102600:three_prime_UTR | 40.0% | |
| CCTCTTAACGACATCTGAAT+CGG | + | chr1_3:9458628-9458647 | None:intergenic | 40.0% | |
| TGTGTGTGAATGAAGGGAAT+CGG | - | chr1_3:9458726-9458745 | Msa0102600:CDS | 40.0% | |
| AGCTGAAGTTTCAAGGCTTA+TGG | - | chr1_3:9458801-9458820 | Msa0102600:CDS | 40.0% | |
| !! | TGTAGGCATTGGACAAGATT+AGG | - | chr1_3:9459290-9459309 | Msa0102600:CDS | 40.0% |
| TGTCTTTATCAGTGAGGGAT+AGG | + | chr1_3:9459318-9459337 | None:intergenic | 40.0% | |
| ACAAACCTGGATTTCAAGCT+TGG | + | chr1_3:9459362-9459381 | None:intergenic | 40.0% | |
| ATCCTATCTATTAGAGACCG+AGG | - | chr1_3:9459745-9459764 | Msa0102600:CDS | 40.0% | |
| TACCTCGGTCTCTAATAGAT+AGG | + | chr1_3:9459750-9459769 | None:intergenic | 40.0% | |
| TCTATTAGAGACCGAGGTAT+TGG | - | chr1_3:9459751-9459770 | Msa0102600:CDS | 40.0% | |
| CCTTTGTCATACCAATACCT+CGG | + | chr1_3:9459765-9459784 | None:intergenic | 40.0% | |
| !! | AGGTATTGGTATGACAAAGG+AGG | - | chr1_3:9459765-9459784 | Msa0102600:CDS | 40.0% |
| TTGGGTACCATAGCAAAATC+TGG | - | chr1_3:9459802-9459821 | Msa0102600:CDS | 40.0% | |
| GTTGAGAAAATGCAGACAAG+TGG | - | chr1_3:9459928-9459947 | Msa0102600:intron | 40.0% | |
| ! | CTAATTGGGCAATTTGGAGT+TGG | - | chr1_3:9459961-9459980 | Msa0102600:intron | 40.0% |
| ! | GTATGGGAATCTAAAGCTGA+TGG | - | chr1_3:9460157-9460176 | Msa0102600:intron | 40.0% |
| GATACATGGAATGAACCACT+AGG | - | chr1_3:9460199-9460218 | Msa0102600:intron | 40.0% | |
| AGTGCAAATTGTTGACAGCT+AGG | + | chr1_3:9460417-9460436 | None:intergenic | 40.0% | |
| TGGAGTATGCATACCTTAGA+AGG | - | chr1_3:9460652-9460671 | Msa0102600:CDS | 40.0% | |
| TGCTTCCCCAGATATAGATA+GGG | + | chr1_3:9460925-9460944 | None:intergenic | 40.0% | |
| TTGCTTCCCCAGATATAGAT+AGG | + | chr1_3:9460926-9460945 | None:intergenic | 40.0% | |
| TCATCTTCACTTTCCTCCTT+GGG | + | chr1_3:9461146-9461165 | None:intergenic | 40.0% | |
| TTCATCTTCACTTTCCTCCT+TGG | + | chr1_3:9461147-9461166 | None:intergenic | 40.0% | |
| GCCTAAAACAAAGACAGTGA+AGG | - | chr1_3:9461199-9461218 | Msa0102600:intron | 40.0% | |
| TATATGGCTGAGGAATCCAA+AGG | - | chr1_3:9461262-9461281 | Msa0102600:intron | 40.0% | |
| ATATTACCTTGGCAAGAGAG+TGG | + | chr1_3:9461319-9461338 | None:intergenic | 40.0% | |
| TTATCAAGCTCCGAGAAAAG+TGG | + | chr1_3:9461387-9461406 | None:intergenic | 40.0% | |
| ! | GTTGGGGATTTGTGTTTTGT+AGG | - | chr1_3:9461417-9461436 | Msa0102600:intron | 40.0% |
| GCGATGACAAACCTTTATCA+TGG | - | chr1_3:9461446-9461465 | Msa0102600:intron | 40.0% | |
| GTAAAGTGGCTCCATGATAA+AGG | + | chr1_3:9461460-9461479 | None:intergenic | 40.0% | |
| CTCGTCTAACATACAACTTC+AGG | + | chr1_3:9461579-9461598 | None:intergenic | 40.0% | |
| !! | TTCTTTTTGGCATTGGGAAC+AGG | - | chr1_3:9461727-9461746 | Msa0102600:CDS | 40.0% |
| !! | TCTTTTTGGCATTGGGAACA+GGG | - | chr1_3:9461728-9461747 | Msa0102600:CDS | 40.0% |
| ! | GCAAAGTGTCAGAATCAACA+AGG | + | chr1_3:9461754-9461773 | None:intergenic | 40.0% |
| CAAGCTTACGGATCATATCA+AGG | + | chr1_3:9461853-9461872 | None:intergenic | 40.0% | |
| AGGTATGGTGTAATGACTGT+TGG | - | chr1_3:9461913-9461932 | Msa0102600:CDS | 40.0% | |
| GGTATGGTGTAATGACTGTT+GGG | - | chr1_3:9461914-9461933 | Msa0102600:CDS | 40.0% | |
| CGCTCGCTTACATTTGAAAA+GGG | + | chr1_3:9461980-9461999 | None:intergenic | 40.0% | |
| ! | CCTTTTCAAATGTAAGCGAG+CGG | - | chr1_3:9461978-9461997 | Msa0102600:intron | 40.0% |
| AAAGTCAGTGAAGGGAATTC+AGG | + | chr1_3:9462007-9462026 | None:intergenic | 40.0% | |
| AGAAGCGAAAAGTCAGTGAA+GGG | + | chr1_3:9462015-9462034 | None:intergenic | 40.0% | |
| TAGAAGCGAAAAGTCAGTGA+AGG | + | chr1_3:9462016-9462035 | None:intergenic | 40.0% | |
| TCTCTTCTCATCAACATCAG+AGG | + | chr1_3:9462069-9462088 | None:intergenic | 40.0% | |
| ! | TCTGATGTTGATGAGAAGAG+AGG | - | chr1_3:9462068-9462087 | Msa0102600:intron | 40.0% |
| !! | ACCAAGTTCTGGAATGAGTT+TGG | - | chr1_3:9462098-9462117 | Msa0102600:CDS | 40.0% |
| TCCAAACTCATTCCAGAACT+TGG | + | chr1_3:9462102-9462121 | None:intergenic | 40.0% | |
| TATTTACAGCACCAAGTCTG+AGG | - | chr1_3:9462283-9462302 | Msa0102600:intron | 40.0% | |
| ATTTACAGCACCAAGTCTGA+GGG | - | chr1_3:9462284-9462303 | Msa0102600:intron | 40.0% | |
| TGTCAATTTACCCTCAGACT+TGG | + | chr1_3:9462297-9462316 | None:intergenic | 40.0% | |
| TAGAATGAAAGCTGGACAGA+AGG | - | chr1_3:9462337-9462356 | Msa0102600:intron | 40.0% | |
| ! | TTTTCTTCTTCAGACGCTCA+AGG | + | chr1_3:9462415-9462434 | None:intergenic | 40.0% |
| GAAGTTCCAAAATGTGTCCA+AGG | - | chr1_3:9462597-9462616 | Msa0102600:intron | 40.0% | |
| TTCCAAAATGTGTCCAAGGA+GGG | - | chr1_3:9462601-9462620 | Msa0102600:intron | 40.0% | |
| GGAACTAAAGGAATCCTTCA+AGG | - | chr1_3:9462654-9462673 | Msa0102600:intron | 40.0% | |
| CCACTTAGTTAGATCCTTGA+AGG | + | chr1_3:9462671-9462690 | None:intergenic | 40.0% | |
| CCTTCAAGGATCTAACTAAG+TGG | - | chr1_3:9462668-9462687 | Msa0102600:intron | 40.0% | |
| TCAAGGATCTAACTAAGTGG+TGG | - | chr1_3:9462671-9462690 | Msa0102600:intron | 40.0% | |
| ! | CATCGACATTGTCATTTGCA+AGG | + | chr1_3:9462705-9462724 | None:intergenic | 40.0% |
| TGTGAAGATATCCAACCGAT+TGG | - | chr1_3:9462726-9462745 | Msa0102600:intron | 40.0% | |
| !! | CACAAGGAGTGTTATCCAAT+CGG | + | chr1_3:9462744-9462763 | None:intergenic | 40.0% |
| TTTGATGTCACCACTACACA+AGG | + | chr1_3:9462760-9462779 | None:intergenic | 40.0% | |
| ATTTGGTTGGAGTGCAAACA+TGG | - | chr1_3:9462780-9462799 | Msa0102600:intron | 40.0% | |
| AAAAAGCAAGCATACATGCG+CGG | - | chr1_3:9462838-9462857 | Msa0102600:intron | 40.0% | |
| ! | TCATCAGCTTCATTTGAAGC+AGG | + | chr1_3:9463235-9463254 | None:intergenic | 40.0% |
| TGCTTCAAATGAAGCTGATG+AGG | - | chr1_3:9463234-9463253 | Msa0102600:intron | 40.0% | |
| ! | AAATGACGATGGTGATGTCA+AGG | - | chr1_3:9463258-9463277 | Msa0102600:intron | 40.0% |
| !! | TGTCGGTTGCAGTTATTTCT+TGG | - | chr1_3:9463323-9463342 | Msa0102600:CDS | 40.0% |
| AAGGCAAAATTCCAACGGAT+GGG | + | chr1_3:9463395-9463414 | None:intergenic | 40.0% | |
| TAAGGCAAAATTCCAACGGA+TGG | + | chr1_3:9463396-9463415 | None:intergenic | 40.0% | |
| GTGCTAAGGCAAAATTCCAA+CGG | + | chr1_3:9463400-9463419 | None:intergenic | 40.0% | |
| ! | TCAGCTTTTATTGCCTCCAA+TGG | - | chr1_3:9463553-9463572 | Msa0102600:exon | 40.0% |
| CGCAGTACGAAAAGCAATAT+TGG | - | chr1_3:9463678-9463697 | Msa0102600:five_prime_UTR | 40.0% | |
| GAAATTCTGAGTCGTCCATG+TGG | - | chr1_3:9458038-9458057 | Msa0102600:three_prime_UTR | 45.0% | |
| !! | ATGTAATGGATGGACCCACA+TGG | + | chr1_3:9458056-9458075 | None:intergenic | 45.0% |
| TTGATCTAGTTGCTTCGACG+TGG | + | chr1_3:9458105-9458124 | None:intergenic | 45.0% | |
| !! | GCAACGTGGCGTTGATTAAT+TGG | + | chr1_3:9458129-9458148 | None:intergenic | 45.0% |
| ATGATCTGACGGTGAAGGAT+GGG | + | chr1_3:9458158-9458177 | None:intergenic | 45.0% | |
| CTGTCATTGCAATGAGGAAG+TGG | - | chr1_3:9458328-9458347 | Msa0102600:three_prime_UTR | 45.0% | |
| CTTCTTCTTCTCGCAGATCA+AGG | - | chr1_3:9458384-9458403 | Msa0102600:three_prime_UTR | 45.0% | |
| AGTAGTAGATCCACCAAAGG+TGG | - | chr1_3:9458566-9458585 | Msa0102600:three_prime_UTR | 45.0% | |
| ! | CCGAGTTTTTCTTCCACCTT+TGG | + | chr1_3:9458582-9458601 | None:intergenic | 45.0% |
| GAATCGGTTGAAAGTCCATG+AGG | + | chr1_3:9458612-9458631 | None:intergenic | 45.0% | |
| CCGATTCAGATGTCGTTAAG+AGG | - | chr1_3:9458625-9458644 | Msa0102600:CDS | 45.0% | |
| !! | TCGGTGTGTGTTTAGTTCTG+TGG | - | chr1_3:9458954-9458973 | Msa0102600:intron | 45.0% |
| !!! | AATTTTGACTCCTCCCGAAG+TGG | - | chr1_3:9459183-9459202 | Msa0102600:CDS | 45.0% |
| !! | CCGAGGTATTGGTATGACAA+AGG | - | chr1_3:9459762-9459781 | Msa0102600:CDS | 45.0% |
| ! | AATGTTTGCCGCTTGTGATC+TGG | - | chr1_3:9459863-9459882 | Msa0102600:intron | 45.0% |
| ! | TGGTATGTCGCGGATGTTTT+CGG | - | chr1_3:9460084-9460103 | Msa0102600:CDS | 45.0% |
| ! | AGTAGGGGGTAGTGTTTCTA+TGG | - | chr1_3:9460632-9460651 | Msa0102600:CDS | 45.0% |
| AAACATAGTTAGGCGAGTGC+TGG | + | chr1_3:9460729-9460748 | None:intergenic | 45.0% | |
| CTATATCTGGGGAAGCAAAG+AGG | - | chr1_3:9460928-9460947 | Msa0102600:CDS | 45.0% | |
| !! | AAGCAAAGAGGTTGATGTGG+AGG | - | chr1_3:9460940-9460959 | Msa0102600:CDS | 45.0% |
| CATCTTCACTTTCCTCCTTG+GGG | + | chr1_3:9461145-9461164 | None:intergenic | 45.0% | |
| TGAAGGAAACGACTTACGAG+TGG | - | chr1_3:9461216-9461235 | Msa0102600:intron | 45.0% | |
| GAAGGAAACGACTTACGAGT+GGG | - | chr1_3:9461217-9461236 | Msa0102600:intron | 45.0% | |
| ATGTGAAGGCTATATGGCTG+AGG | - | chr1_3:9461252-9461271 | Msa0102600:intron | 45.0% | |
| GAATCCAAAGGAGGTTACAG+AGG | - | chr1_3:9461274-9461293 | Msa0102600:intron | 45.0% | |
| TCTTCCTCTGTAACCTCCTT+TGG | + | chr1_3:9461281-9461300 | None:intergenic | 45.0% | |
| ATTCTACCACTCTCTTGCCA+AGG | - | chr1_3:9461310-9461329 | Msa0102600:intron | 45.0% | |
| CATCACCTTCAGCAGTAAAG+TGG | + | chr1_3:9461474-9461493 | None:intergenic | 45.0% | |
| ! | GTGCTTTAGGTGGCACATAA+AGG | + | chr1_3:9461513-9461532 | None:intergenic | 45.0% |
| ! | TACAAGTCCTGAGGTGCTTT+AGG | + | chr1_3:9461526-9461545 | None:intergenic | 45.0% |
| TAACTCTCGTACAAGTCCTG+AGG | + | chr1_3:9461535-9461554 | None:intergenic | 45.0% | |
| CCGCTCGCTTACATTTGAAA+AGG | + | chr1_3:9461981-9462000 | None:intergenic | 45.0% | |
| GAGGTCAATACACCAAGTTC+TGG | - | chr1_3:9462087-9462106 | Msa0102600:CDS | 45.0% | |
| TGGAACCAGCAAAGAACAAC+TGG | - | chr1_3:9462376-9462395 | Msa0102600:intron | 45.0% | |
| TTCTTCAGACGCTCAAGGAA+TGG | + | chr1_3:9462410-9462429 | None:intergenic | 45.0% | |
| GTTCCAAAATGTGTCCAAGG+AGG | - | chr1_3:9462600-9462619 | Msa0102600:intron | 45.0% | |
| ! | CGGGAAGGATTCTAAAGACA+AGG | - | chr1_3:9462633-9462652 | Msa0102600:intron | 45.0% |
| !! | AGGAGTGTTATCCAATCGGT+TGG | + | chr1_3:9462740-9462759 | None:intergenic | 45.0% |
| GGATAACACTCCTTGTGTAG+TGG | - | chr1_3:9462747-9462766 | Msa0102600:intron | 45.0% | |
| TCCTAGACACCCTATCATCA+AGG | - | chr1_3:9462882-9462901 | Msa0102600:intron | 45.0% | |
| ! | TCCTTGATGATAGGGTGTCT+AGG | + | chr1_3:9462886-9462905 | None:intergenic | 45.0% |
| ACCCTATCATCAAGGAACTC+CGG | - | chr1_3:9462890-9462909 | Msa0102600:intron | 45.0% | |
| GGTTCTTAACTACTCTCTCC+CGG | + | chr1_3:9462912-9462931 | None:intergenic | 45.0% | |
| GAGAGTAGTTAAGAACCCTG+AGG | - | chr1_3:9462915-9462934 | Msa0102600:intron | 45.0% | |
| ! | CACTTTCGAAAAGTGCAGTC+TGG | + | chr1_3:9463069-9463088 | None:intergenic | 45.0% |
| ! | CAGACTGCACTTTTCGAAAG+TGG | - | chr1_3:9463067-9463086 | Msa0102600:CDS | 45.0% |
| GGAAGATGAGACTGAAGTTG+AGG | - | chr1_3:9463183-9463202 | Msa0102600:intron | 45.0% | |
| GCTGATGAGGTAAATGACGA+TGG | - | chr1_3:9463247-9463266 | Msa0102600:intron | 45.0% | |
| AAGTTAAAGGACCCATCCGT+TGG | - | chr1_3:9463381-9463400 | Msa0102600:intron | 45.0% | |
| ! | AGGATGGGTTTAGTGCAACG+TGG | + | chr1_3:9458143-9458162 | None:intergenic | 50.0% |
| GATGATCTGACGGTGAAGGA+TGG | + | chr1_3:9458159-9458178 | None:intergenic | 50.0% | |
| CATGGATGATCTGACGGTGA+AGG | + | chr1_3:9458163-9458182 | None:intergenic | 50.0% | |
| TGCCAGCATGGATGATCTGA+CGG | + | chr1_3:9458169-9458188 | None:intergenic | 50.0% | |
| TCCTTGCTGGGACGAAGAAT+GGG | + | chr1_3:9458204-9458223 | None:intergenic | 50.0% | |
| TTCCTTGCTGGGACGAAGAA+TGG | + | chr1_3:9458205-9458224 | None:intergenic | 50.0% | |
| !! | AAACTCGGTGCTGTTCCTCA+TGG | - | chr1_3:9458594-9458613 | Msa0102600:three_prime_UTR | 50.0% |
| GAGATCCCTTCGCAGTAATG+CGG | - | chr1_3:9458762-9458781 | Msa0102600:CDS | 50.0% | |
| CTTCTCCGCATTACTGCGAA+GGG | + | chr1_3:9458770-9458789 | None:intergenic | 50.0% | |
| ACTTCTCCGCATTACTGCGA+AGG | + | chr1_3:9458771-9458790 | None:intergenic | 50.0% | |
| ! | ATGTTTGGTTCCACTTCGGG+AGG | + | chr1_3:9459196-9459215 | None:intergenic | 50.0% |
| CAACGCCAAGCTTGAAATCC+AGG | - | chr1_3:9459354-9459373 | Msa0102600:CDS | 50.0% | |
| CCTTCACACCAGATCACAAG+CGG | + | chr1_3:9459874-9459893 | None:intergenic | 50.0% | |
| TGGAATGAACCACTAGGACG+TGG | - | chr1_3:9460205-9460224 | Msa0102600:intron | 50.0% | |
| ATCTCTGTTCCACGTCCTAG+TGG | + | chr1_3:9460217-9460236 | None:intergenic | 50.0% | |
| ATACTCTTCCACGTACTCGC+TGG | + | chr1_3:9460263-9460282 | None:intergenic | 50.0% | |
| !! | GGGAAGCAAAGAGGTTGATG+TGG | - | chr1_3:9460937-9460956 | Msa0102600:CDS | 50.0% |
| AGACTCGTCGTCTTCATCAG+CGG | + | chr1_3:9460969-9460988 | None:intergenic | 50.0% | |
| TGAAGACGACGAGTCTTCTG+AGG | - | chr1_3:9460973-9460992 | Msa0102600:CDS | 50.0% | |
| TCAATCAGCTGAAAGCCCCA+AGG | - | chr1_3:9461127-9461146 | Msa0102600:intron | 50.0% | |
| ATGGCTGAGGAATCCAAAGG+AGG | - | chr1_3:9461265-9461284 | Msa0102600:intron | 50.0% | |
| ! | TGGAGCCACTTTACTGCTGA+AGG | - | chr1_3:9461466-9461485 | Msa0102600:intron | 50.0% |
| ! | AAGTCCTGAGGTGCTTTAGG+TGG | + | chr1_3:9461523-9461542 | None:intergenic | 50.0% |
| ! | CTTTGTCAGTGGACTCGTCA+GGG | + | chr1_3:9461886-9461905 | None:intergenic | 50.0% |
| ! | TCTTTGTCAGTGGACTCGTC+AGG | + | chr1_3:9461887-9461906 | None:intergenic | 50.0% |
| ! | GACCCTCCTTGGACACATTT+TGG | + | chr1_3:9462606-9462625 | None:intergenic | 50.0% |
| ! | TCCAAGGAGGGTCTGAAACT+CGG | - | chr1_3:9462613-9462632 | Msa0102600:intron | 50.0% |
| ! | CCCGGAGTTCCTTGATGATA+GGG | + | chr1_3:9462894-9462913 | None:intergenic | 50.0% |
| CCCTATCATCAAGGAACTCC+GGG | - | chr1_3:9462891-9462910 | Msa0102600:intron | 50.0% | |
| ! | TCCCGGAGTTCCTTGATGAT+AGG | + | chr1_3:9462895-9462914 | None:intergenic | 50.0% |
| TCCTGACGCAACAGTTGAAG+AGG | - | chr1_3:9463162-9463181 | Msa0102600:intron | 50.0% | |
| TCCTCTTCAACTGTTGCGTC+AGG | + | chr1_3:9463166-9463185 | None:intergenic | 50.0% | |
| CACCGTCAGATCATCCATGC+TGG | - | chr1_3:9458164-9458183 | Msa0102600:three_prime_UTR | 55.0% | |
| AGCGGTTGGATTTGCCAGCA+TGG | + | chr1_3:9458181-9458200 | None:intergenic | 55.0% | |
| TCCCATTCTTCGTCCCAGCA+AGG | - | chr1_3:9458200-9458219 | Msa0102600:three_prime_UTR | 55.0% | |
| CCGCTTGTGATCTGGTGTGA+AGG | - | chr1_3:9459871-9459890 | Msa0102600:intron | 55.0% | |
| ! | ACTCGCTGGCCTCTTCTTTG+AGG | + | chr1_3:9460249-9460268 | None:intergenic | 55.0% |
| GACTCGTCGTCTTCATCAGC+GGG | + | chr1_3:9460968-9460987 | None:intergenic | 55.0% | |
| ! | CGACGAGTCTTCTGAGGAAG+AGG | - | chr1_3:9460979-9460998 | Msa0102600:CDS | 55.0% |
| ATCAGCTGAAAGCCCCAAGG+AGG | - | chr1_3:9461130-9461149 | Msa0102600:intron | 55.0% | |
| ! | TGTGCCACCTAAAGCACCTC+AGG | - | chr1_3:9461516-9461535 | Msa0102600:intron | 55.0% |
| GATCCGTAAGCTTGCCGAAG+AGG | - | chr1_3:9461859-9461878 | Msa0102600:intron | 55.0% | |
| GGTCCTCTTCGGCAAGCTTA+CGG | + | chr1_3:9461865-9461884 | None:intergenic | 55.0% | |
| ! | CCAAGGAGGGTCTGAAACTC+GGG | - | chr1_3:9462614-9462633 | Msa0102600:intron | 55.0% |
| AAGCATACATGCGCGGCAAG+AGG | - | chr1_3:9462845-9462864 | Msa0102600:intron | 55.0% | |
| AGCATACATGCGCGGCAAGA+GGG | - | chr1_3:9462846-9462865 | Msa0102600:intron | 55.0% | |
| GGACGAAGAATGGGAGCGGT+TGG | + | chr1_3:9458195-9458214 | None:intergenic | 60.0% | |
| GCTGGGACGAAGAATGGGAG+CGG | + | chr1_3:9458199-9458218 | None:intergenic | 60.0% | |
| AGAAGAGGCCAGCGAGTACG+TGG | - | chr1_3:9460252-9460271 | Msa0102600:intron | 60.0% | |
| CTCTCTGGCGTGCGTGCATA+AGG | - | chr1_3:9460542-9460561 | Msa0102600:intron | 60.0% | |
| GGACTCGTCAGGGTCCTCTT+CGG | + | chr1_3:9461876-9461895 | None:intergenic | 60.0% | |
| CCCGAGTTTCAGACCCTCCT+TGG | + | chr1_3:9462617-9462636 | None:intergenic | 60.0% | |
| ! | GGAGGGTCTGAAACTCGGGA+AGG | - | chr1_3:9462618-9462637 | Msa0102600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9458037 | 9463872 | 9458037 | ID=Msa0102600;Name=Msa0102600 |
| chr1_3 | mRNA | 9458037 | 9463872 | 9458037 | ID=Msa0102600-mRNA-1;Parent=Msa0102600;Name=Msa0102600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=302|1|1|1|1|1|15|581|818 |
| chr1_3 | exon | 9458037 | 9458878 | 9458037 | ID=Msa0102600-mRNA-1:exon:3835;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9458973 | 9459377 | 9458973 | ID=Msa0102600-mRNA-1:exon:3834;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9459467 | 9459617 | 9459467 | ID=Msa0102600-mRNA-1:exon:3833;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9459714 | 9459852 | 9459714 | ID=Msa0102600-mRNA-1:exon:3832;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9459995 | 9460160 | 9459995 | ID=Msa0102600-mRNA-1:exon:3831;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9460255 | 9460470 | 9460255 | ID=Msa0102600-mRNA-1:exon:3830;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9460578 | 9460774 | 9460578 | ID=Msa0102600-mRNA-1:exon:3829;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9460902 | 9461022 | 9460902 | ID=Msa0102600-mRNA-1:exon:3828;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9461618 | 9461756 | 9461618 | ID=Msa0102600-mRNA-1:exon:3827;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9461860 | 9461986 | 9461860 | ID=Msa0102600-mRNA-1:exon:3826;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9462077 | 9462188 | 9462077 | ID=Msa0102600-mRNA-1:exon:3825;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9462534 | 9462614 | 9462534 | ID=Msa0102600-mRNA-1:exon:3824;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9463015 | 9463168 | 9463015 | ID=Msa0102600-mRNA-1:exon:3823;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9463263 | 9463383 | 9463263 | ID=Msa0102600-mRNA-1:exon:3822;Parent=Msa0102600-mRNA-1 |
| chr1_3 | exon | 9463504 | 9463872 | 9463504 | ID=Msa0102600-mRNA-1:exon:3821;Parent=Msa0102600-mRNA-1 |
| chr1_3 | five_prime_UTR | 9463571 | 9463872 | 9463571 | ID=Msa0102600-mRNA-1:five_prime_utr;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9463504 | 9463570 | 9463504 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9463263 | 9463383 | 9463263 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9463015 | 9463168 | 9463015 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9462534 | 9462614 | 9462534 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9462077 | 9462188 | 9462077 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9461860 | 9461986 | 9461860 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9461618 | 9461756 | 9461618 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9460902 | 9461022 | 9460902 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9460578 | 9460774 | 9460578 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9460255 | 9460470 | 9460255 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9459995 | 9460160 | 9459995 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9459714 | 9459852 | 9459714 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9459467 | 9459617 | 9459467 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9458973 | 9459377 | 9458973 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | CDS | 9458618 | 9458878 | 9458618 | ID=Msa0102600-mRNA-1:cds;Parent=Msa0102600-mRNA-1 |
| chr1_3 | three_prime_UTR | 9458037 | 9458617 | 9458037 | ID=Msa0102600-mRNA-1:three_prime_utr;Parent=Msa0102600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
