Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147380 | XP_003589505.1 | 99.389 | 818 | 5 | 0 | 54 | 871 | 1 | 818 | 0.0 | 1640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147380 | sp|P35016|ENPL_CATRO | 82.784 | 819 | 138 | 2 | 54 | 871 | 1 | 817 | 0.0 | 1296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147380 | G7I7Q4 | 99.389 | 818 | 5 | 0 | 54 | 871 | 1 | 818 | 0.0 | 1640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa0147380 | 0.866528 | 2.670001e-65 | -8.615850e-47 |
| Msa0057890 | Msa0147380 | 0.894256 | 2.925868e-75 | -8.615850e-47 |
| Msa0102600 | Msa0147380 | 0.997890 | 2.198117e-251 | -8.615850e-47 |
| Msa0147380 | Msa0372420 | 0.853339 | 2.551516e-61 | -8.615850e-47 |
| Msa0147380 | Msa0382400 | 0.837029 | 6.614873e-57 | -8.615850e-47 |
| Msa0147380 | Msa0432130 | 0.854191 | 1.450302e-61 | -8.615850e-47 |
| Msa0147380 | Msa0476640 | 0.858975 | 5.694738e-63 | -8.615850e-47 |
| Msa0147380 | Msa0707100 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa0147380 | Msa0867160 | 0.863440 | 2.486054e-64 | -8.615850e-47 |
| Msa0147380 | Msa1041140 | 0.898742 | 3.936605e-77 | -8.615850e-47 |
| Msa0147380 | Msa1082290 | 0.871359 | 7.257403e-67 | -8.615850e-47 |
| Msa0147380 | Msa1082300 | 0.845185 | 4.754417e-59 | -8.615850e-47 |
| Msa0147380 | Msa1124060 | 0.810358 | 1.199232e-50 | -8.615850e-47 |
| Msa0147380 | Msa1127190 | 0.852084 | 5.820065e-61 | -8.615850e-47 |
| Msa0147380 | Msa1168990 | 0.834812 | 2.413563e-56 | -8.615850e-47 |
| Msa0147380 | Msa1169080 | 0.809802 | 1.580462e-50 | -8.615850e-47 |
| Msa0147380 | Msa1235380 | 0.841834 | 3.736453e-58 | -8.615850e-47 |
| Msa0147380 | Msa1276530 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0147380 | Msa1356020 | 0.814513 | 1.482519e-51 | -8.615850e-47 |
| Msa0147380 | Msa1362020 | 0.900806 | 5.063554e-78 | -8.615850e-47 |
| Msa0147380 | Msa1421460 | 0.834904 | 2.288278e-56 | -8.615850e-47 |
| Msa0147380 | Msa1422430 | 0.808672 | 2.760356e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147380 | MtrunA17_Chr1g0156731 | 99.389 | 818 | 5 | 0 | 54 | 871 | 1 | 818 | 0.0 | 1640 |
| Msa0147380 | MtrunA17_Chr6g0469201 | 49.508 | 711 | 317 | 7 | 128 | 833 | 2 | 675 | 0.0 | 646 |
| Msa0147380 | MtrunA17_Chr5g0446951 | 48.718 | 702 | 319 | 8 | 131 | 828 | 5 | 669 | 0.0 | 617 |
| Msa0147380 | MtrunA17_Chr5g0446941 | 48.718 | 702 | 319 | 8 | 131 | 828 | 5 | 669 | 0.0 | 617 |
| Msa0147380 | MtrunA17_Chr1g0202601 | 47.283 | 736 | 316 | 11 | 128 | 852 | 7 | 681 | 0.0 | 602 |
| Msa0147380 | MtrunA17_Chr5g0447581 | 46.164 | 743 | 345 | 15 | 130 | 857 | 89 | 791 | 0.0 | 595 |
| Msa0147380 | MtrunA17_Chr5g0420861 | 44.912 | 737 | 352 | 15 | 129 | 854 | 80 | 773 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147380 | AT4G24190.1 | 83.055 | 779 | 127 | 3 | 54 | 831 | 1 | 775 | 0.0 | 1243 |
| Msa0147380 | AT4G24190.2 | 83.055 | 779 | 127 | 3 | 54 | 831 | 1 | 775 | 0.0 | 1243 |
| Msa0147380 | AT5G52640.1 | 49.041 | 730 | 330 | 8 | 128 | 852 | 2 | 694 | 0.0 | 647 |
| Msa0147380 | AT5G56000.1 | 47.765 | 716 | 333 | 7 | 128 | 839 | 2 | 680 | 0.0 | 625 |
| Msa0147380 | AT5G56010.1 | 47.943 | 705 | 326 | 7 | 128 | 828 | 2 | 669 | 0.0 | 615 |
| Msa0147380 | AT5G56030.1 | 47.943 | 705 | 326 | 7 | 128 | 828 | 2 | 669 | 0.0 | 614 |
| Msa0147380 | AT3G07770.1 | 47.525 | 707 | 321 | 13 | 130 | 826 | 94 | 760 | 0.0 | 610 |
| Msa0147380 | AT3G07770.3 | 47.525 | 707 | 321 | 13 | 130 | 826 | 94 | 760 | 0.0 | 610 |
| Msa0147380 | AT3G07770.2 | 47.525 | 707 | 321 | 13 | 130 | 826 | 94 | 760 | 0.0 | 610 |
| Msa0147380 | AT5G56030.2 | 46.049 | 734 | 326 | 8 | 128 | 828 | 2 | 698 | 0.0 | 600 |
| Msa0147380 | AT2G04030.1 | 45.200 | 750 | 338 | 17 | 128 | 852 | 74 | 775 | 0.0 | 600 |
| Msa0147380 | AT2G04030.2 | 45.067 | 750 | 336 | 17 | 128 | 852 | 74 | 772 | 0.0 | 597 |
Find 202 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACAATGTTTATCAAATT+TGG | 0.108599 | 1_4:+7359014 | None:intergenic |
| CCTCACTGATAAAGACATTT+TGG | 0.132107 | 1_4:-7363296 | Msa0147380:CDS |
| CTCAATCTAATTGGGCAATT+TGG | 0.152816 | 1_4:-7362662 | Msa0147380:CDS |
| AAAACTGATCATTTATAAAA+TGG | 0.155265 | 1_4:+7359109 | None:intergenic |
| CTCAATGATACCAAGTTTAA+TGG | 0.159199 | 1_4:+7360489 | None:intergenic |
| GGAGGATTTAGTAAAGAATT+TGG | 0.170307 | 1_4:-7362834 | Msa0147380:CDS |
| GACCCTCCTTGGACACATTT+TGG | 0.171757 | 1_4:+7360015 | None:intergenic |
| ACTACTACTGTCCTCAATTT+TGG | 0.200676 | 1_4:-7358904 | Msa0147380:three_prime_UTR |
| TTAACTTCCCTATCTATATC+TGG | 0.204471 | 1_4:-7361700 | Msa0147380:CDS |
| AGCTGAAGTTTCAAGGCTTA+TGG | 0.218402 | 1_4:-7363816 | Msa0147380:CDS |
| AGTGGTGATCTCAATCTAAT+TGG | 0.239122 | 1_4:-7362671 | Msa0147380:CDS |
| TTCATCTTCACTTTCCTCCT+TGG | 0.262279 | 1_4:+7361471 | None:intergenic |
| TCATCTTCACTTTCCTCCTT+GGG | 0.274450 | 1_4:+7361472 | None:intergenic |
| TGTCGGTTGCAGTTATTTCT+TGG | 0.277555 | 1_4:-7359295 | Msa0147380:three_prime_UTR |
| TCTTCCTCTGTAACCTCCTT+TGG | 0.284101 | 1_4:+7361337 | None:intergenic |
| AATTCTAGAAGCAAAATCTT+TGG | 0.301414 | 1_4:+7359511 | None:intergenic |
| ACCAAGTTCTGGAATGAGTT+TGG | 0.314376 | 1_4:-7360517 | Msa0147380:CDS |
| GAGGATTTAGTAAAGAATTT+GGG | 0.326668 | 1_4:-7362833 | Msa0147380:CDS |
| TTGCTTCCCCAGATATAGAT+AGG | 0.331375 | 1_4:+7361692 | None:intergenic |
| TGCATCAAGTATTCATCAAC+TGG | 0.336633 | 1_4:+7360068 | None:intergenic |
| CAATTCGCTTTACAGTAATA+AGG | 0.345337 | 1_4:-7363783 | Msa0147380:CDS |
| CGCAGTACGAAAAGCAATAT+TGG | 0.349572 | 1_4:-7358940 | Msa0147380:three_prime_UTR |
| CCACTTAGTTAGATCCTTGA+AGG | 0.361563 | 1_4:+7359950 | None:intergenic |
| ATCTGACTTTCAGGTATGTA+TGG | 0.368320 | 1_4:-7362477 | Msa0147380:intron |
| CCCGAGTTTCAGACCCTCCT+TGG | 0.369926 | 1_4:+7360004 | None:intergenic |
| CTCGTCTAACATACAACTTC+AGG | 0.373088 | 1_4:+7361039 | None:intergenic |
| GTAGTGGTGACATCAAAATT+TGG | 0.373244 | 1_4:-7359855 | Msa0147380:CDS |
| ATTCTAGAAGCAAAATCTTT+GGG | 0.376348 | 1_4:+7359512 | None:intergenic |
| CTTCTTCTTCTCGCAGATCA+AGG | 0.377003 | 1_4:-7364233 | Msa0147380:intron |
| TGTAGGCATTGGACAAGATT+AGG | 0.378748 | 1_4:-7363327 | Msa0147380:intron |
| GAGGTCAATACACCAAGTTC+TGG | 0.382290 | 1_4:-7360528 | Msa0147380:CDS |
| TCTTTGTCAGTGGACTCGTC+AGG | 0.385604 | 1_4:+7360731 | None:intergenic |
| TAAATGATGTGAAGGCTATA+TGG | 0.388507 | 1_4:-7361369 | Msa0147380:CDS |
| TCCAAACTCATTCCAGAACT+TGG | 0.392555 | 1_4:+7360516 | None:intergenic |
| TACAAGTCCTGAGGTGCTTT+AGG | 0.402740 | 1_4:+7361092 | None:intergenic |
| AGTTTCAAGCTGAAGTTTCA+AGG | 0.404580 | 1_4:-7363823 | Msa0147380:CDS |
| TTGGGTACCATAGCAAAATC+TGG | 0.405084 | 1_4:-7362815 | Msa0147380:CDS |
| TCCCGGAGTTCCTTGATGAT+AGG | 0.409122 | 1_4:+7359726 | None:intergenic |
| TCCTCTTCAACTGTTGCGTC+AGG | 0.409870 | 1_4:+7359455 | None:intergenic |
| GGTCCTCTTCGGCAAGCTTA+CGG | 0.422206 | 1_4:+7360753 | None:intergenic |
| ACTCGCTGGCCTCTTCTTTG+AGG | 0.426467 | 1_4:+7362371 | None:intergenic |
| GTAAAGTGGCTCCATGATAA+AGG | 0.427105 | 1_4:+7361158 | None:intergenic |
| GTGCTTTAGGTGGCACATAA+AGG | 0.430754 | 1_4:+7361105 | None:intergenic |
| AAACTGATCATTTATAAAAT+GGG | 0.431965 | 1_4:+7359110 | None:intergenic |
| TGGAACCAGCAAAGAACAAC+TGG | 0.432951 | 1_4:-7360239 | Msa0147380:CDS |
| GCGATGACAAACCTTTATCA+TGG | 0.434104 | 1_4:-7361169 | Msa0147380:CDS |
| TCTATTAGAGACCGAGGTAT+TGG | 0.436822 | 1_4:-7362866 | Msa0147380:CDS |
| TCTTATCTTCATAATCCATC+AGG | 0.444687 | 1_4:+7360042 | None:intergenic |
| ATAGCAAAATCTGGAACTTC+AGG | 0.446829 | 1_4:-7362806 | Msa0147380:intron |
| CCGATTCAGATGTCGTTAAG+AGG | 0.451172 | 1_4:-7363992 | Msa0147380:intron |
| CAACGCCAAGCTTGAAATCC+AGG | 0.454983 | 1_4:-7363263 | Msa0147380:intron |
| TAAATGTTGGTTACCATTCG+AGG | 0.460254 | 1_4:+7359052 | None:intergenic |
| ACAAACGGCAATGGTGGACT+TGG | 0.460289 | 1_4:-7364864 | None:intergenic |
| TAACTTCCCTATCTATATCT+GGG | 0.461417 | 1_4:-7361699 | Msa0147380:CDS |
| ATTTCTCGTGATACATTCAA+TGG | 0.461649 | 1_4:+7360842 | None:intergenic |
| CCAAGGAGGGTCTGAAACTC+GGG | 0.464941 | 1_4:-7360004 | Msa0147380:CDS |
| TTCTAAAGACAAGGAACTAA+AGG | 0.470485 | 1_4:-7359976 | Msa0147380:CDS |
| ACAAACCTGGATTTCAAGCT+TGG | 0.470570 | 1_4:+7363258 | None:intergenic |
| AGTTGGCAAGGAATGGGAAC+GGG | 0.475728 | 1_4:-7364806 | Msa0147380:CDS |
| TACCTCGGTCTCTAATAGAT+AGG | 0.478724 | 1_4:+7362870 | None:intergenic |
| TCCAAGGAGGGTCTGAAACT+CGG | 0.480470 | 1_4:-7360005 | Msa0147380:CDS |
| CTAATTGGGCAATTTGGAGT+TGG | 0.481464 | 1_4:-7362656 | Msa0147380:CDS |
| GGAACTAAAGGAATCCTTCA+AGG | 0.484459 | 1_4:-7359964 | Msa0147380:CDS |
| CCCGGAGTTCCTTGATGATA+GGG | 0.484538 | 1_4:+7359727 | None:intergenic |
| GAGAAATTCTGCCAAAATTG+AGG | 0.484770 | 1_4:+7358893 | None:intergenic |
| TTTGGAAAATCCATTAAACT+TGG | 0.485636 | 1_4:-7360499 | Msa0147380:CDS |
| TTGGCTCAGTTGGCAAGGAA+TGG | 0.487485 | 1_4:-7364813 | Msa0147380:CDS |
| GGAAGATGAGACTGAAGTTG+AGG | 0.489120 | 1_4:-7359435 | Msa0147380:CDS |
| TTGCAATTTCAGAAGATACA+TGG | 0.492822 | 1_4:-7362432 | Msa0147380:CDS |
| TGGCTCAGTTGGCAAGGAAT+GGG | 0.496688 | 1_4:-7364812 | Msa0147380:CDS |
| CATCTTCACTTTCCTCCTTG+GGG | 0.498254 | 1_4:+7361473 | None:intergenic |
| CAAGCTTACGGATCATATCA+AGG | 0.500174 | 1_4:+7360765 | None:intergenic |
| GTGGTGATCTCAATCTAATT+GGG | 0.500326 | 1_4:-7362670 | Msa0147380:CDS |
| CTTCAAGAAATTGTTTAGTG+TGG | 0.500579 | 1_4:-7358828 | Msa0147380:three_prime_UTR |
| CTTTGTCAGTGGACTCGTCA+GGG | 0.500986 | 1_4:+7360732 | None:intergenic |
| GAGAGAATAAGAAGAGTGGA+AGG | 0.502061 | 1_4:+7364260 | None:intergenic |
| TGTCTTTATCAGTGAGGGAT+AGG | 0.504588 | 1_4:+7363302 | None:intergenic |
| TTCTTCAGACGCTCAAGGAA+TGG | 0.506178 | 1_4:+7360208 | None:intergenic |
| CCTCTTAACGACATCTGAAT+CGG | 0.507639 | 1_4:+7363992 | None:intergenic |
| CACAAGGAGTGTTATCCAAT+CGG | 0.507998 | 1_4:+7359877 | None:intergenic |
| CCAACACACGTTGGCTCAGT+TGG | 0.513982 | 1_4:-7364823 | Msa0147380:CDS |
| CGACGAGTCTTCTGAGGAAG+AGG | 0.516292 | 1_4:-7361636 | Msa0147380:CDS |
| GACTCGTCGTCTTCATCAGC+GGG | 0.518353 | 1_4:+7361650 | None:intergenic |
| ATTTGGTTGGAGTGCAAACA+TGG | 0.519357 | 1_4:-7359838 | Msa0147380:CDS |
| CACTTTCGAAAAGTGCAGTC+TGG | 0.519596 | 1_4:+7359552 | None:intergenic |
| TGATAAACGATTTCTGTTGG+TGG | 0.522059 | 1_4:+7360462 | None:intergenic |
| CATCGACATTGTCATTTGCA+AGG | 0.523230 | 1_4:+7359916 | None:intergenic |
| TACATATCTAGAATGAAAGC+TGG | 0.527032 | 1_4:-7360286 | Msa0147380:CDS |
| CGATTTCCTCTGCCGATGTG+AGG | 0.529262 | 1_4:-7364756 | Msa0147380:CDS |
| TCATCAGCTTCATTTGAAGC+AGG | 0.530066 | 1_4:+7359386 | None:intergenic |
| CCCTATCATCAAGGAACTCC+GGG | 0.533736 | 1_4:-7359727 | Msa0147380:CDS |
| CATTAAACTTGGTATCATTG+AGG | 0.534100 | 1_4:-7360488 | Msa0147380:CDS |
| TTTGTGTGAATGAAGGGAAT+CGG | 0.534571 | 1_4:-7363891 | Msa0147380:intron |
| AAGAGAGAGAATAAGAAGAG+TGG | 0.534755 | 1_4:+7364256 | None:intergenic |
| TGTGCCACCTAAAGCACCTC+AGG | 0.535240 | 1_4:-7361099 | Msa0147380:CDS |
| TAAGGCAAAATTCCAACGGA+TGG | 0.535919 | 1_4:+7359225 | None:intergenic |
| GATGCAGATTAAGTTAGATA+AGG | 0.535990 | 1_4:-7362903 | Msa0147380:intron |
| CATCACCTTCAGCAGTAAAG+TGG | 0.538199 | 1_4:+7361144 | None:intergenic |
| CTGTCATTGCAATGAGGAAG+TGG | 0.538787 | 1_4:-7364289 | Msa0147380:CDS |
| CACAACCTTCTGCAAGGAAG+TGG | 0.540093 | 1_4:+7364783 | None:intergenic |
| GTATGGGAATCTAAAGCTGA+TGG | 0.541849 | 1_4:-7362460 | Msa0147380:CDS |
| ACCCTATCATCAAGGAACTC+CGG | 0.542750 | 1_4:-7359728 | Msa0147380:CDS |
| ATACTCTTCCACGTACTCGC+TGG | 0.546272 | 1_4:+7362357 | None:intergenic |
| GGATGAGAGTGTGAAGCAAA+CGG | 0.547097 | 1_4:-7359588 | Msa0147380:CDS |
| AAGCATACATGCGCGGCAAG+AGG | 0.548258 | 1_4:-7359773 | Msa0147380:CDS |
| AAACTCGGTGCTGTTCCTCA+TGG | 0.549531 | 1_4:-7364023 | Msa0147380:CDS |
| TGGTGACATCAAAATTTGGT+TGG | 0.549849 | 1_4:-7359851 | Msa0147380:CDS |
| GGACTCGTCAGGGTCCTCTT+CGG | 0.550477 | 1_4:+7360742 | None:intergenic |
| ATCGACATTGTCATTTGCAA+GGG | 0.551505 | 1_4:+7359917 | None:intergenic |
| AGAAGAGGCCAGCGAGTACG+TGG | 0.552899 | 1_4:-7362365 | Msa0147380:CDS |
| TCCTGACGCAACAGTTGAAG+AGG | 0.553238 | 1_4:-7359456 | Msa0147380:CDS |
| CAAAATGTCTTTATCAGTGA+GGG | 0.554638 | 1_4:+7363297 | None:intergenic |
| GATCCGTAAGCTTGCCGAAG+AGG | 0.555543 | 1_4:-7360756 | Msa0147380:CDS |
| TGCTTCCCCAGATATAGATA+GGG | 0.556945 | 1_4:+7361693 | None:intergenic |
| AGCATACATGCGCGGCAAGA+GGG | 0.557652 | 1_4:-7359772 | Msa0147380:CDS |
| GATTTCCTCTGCCGATGTGA+GGG | 0.558738 | 1_4:-7364755 | Msa0147380:CDS |
| TGTGAAGATATCCAACCGAT+TGG | 0.558827 | 1_4:-7359892 | Msa0147380:CDS |
| AGGAGTGTTATCCAATCGGT+TGG | 0.561154 | 1_4:+7359881 | None:intergenic |
| TAGAATGAAAGCTGGACAGA+AGG | 0.562025 | 1_4:-7360278 | Msa0147380:CDS |
| GAAGTTCCAAAATGTGTCCA+AGG | 0.562529 | 1_4:-7360021 | Msa0147380:CDS |
| TCCACTGACAAAGAAAAGAA+AGG | 0.563357 | 1_4:-7360722 | Msa0147380:intron |
| TGGAGCCACTTTACTGCTGA+AGG | 0.565774 | 1_4:-7361149 | Msa0147380:CDS |
| GGTTCTTAACTACTCTCTCC+CGG | 0.565871 | 1_4:+7359709 | None:intergenic |
| TAAAATACACCTCAAAGAAG+AGG | 0.565903 | 1_4:-7362380 | Msa0147380:CDS |
| TGTCAATTTACCCTCAGACT+TGG | 0.566708 | 1_4:+7360321 | None:intergenic |
| CACTGCCCTCACATCGGCAG+AGG | 0.566844 | 1_4:+7364750 | None:intergenic |
| TCCTTGATGATAGGGTGTCT+AGG | 0.566886 | 1_4:+7359735 | None:intergenic |
| CAATTTCTTGAAGTCTTATG+CGG | 0.568276 | 1_4:+7358838 | None:intergenic |
| AAGTTAAAGGACCCATCCGT+TGG | 0.569335 | 1_4:-7359237 | Msa0147380:three_prime_UTR |
| CGGGAAGGATTCTAAAGACA+AGG | 0.569516 | 1_4:-7359985 | Msa0147380:CDS |
| TATTTACAGCACCAAGTCTG+AGG | 0.569728 | 1_4:-7360332 | Msa0147380:intron |
| CTGATCATTTATAAAATGGG+TGG | 0.572165 | 1_4:+7359113 | None:intergenic |
| TCCTAGACACCCTATCATCA+AGG | 0.573259 | 1_4:-7359736 | Msa0147380:CDS |
| CAGTTGGCAAGGAATGGGAA+CGG | 0.575003 | 1_4:-7364807 | Msa0147380:CDS |
| ACGGGCCACTTCCTTGCAGA+AGG | 0.575448 | 1_4:-7364788 | Msa0147380:CDS |
| TCTAACATACAACTTCAGGT+TGG | 0.576509 | 1_4:+7361043 | None:intergenic |
| ATCTCTGTTCCACGTCCTAG+TGG | 0.579957 | 1_4:+7362403 | None:intergenic |
| AATTTCTTGAAGTCTTATGC+GGG | 0.581132 | 1_4:+7358839 | None:intergenic |
| TAAGACTAATGACTGTGCTA+AGG | 0.581922 | 1_4:+7359207 | None:intergenic |
| AGTAGTAGATCCACCAAAGG+TGG | 0.582933 | 1_4:-7364051 | Msa0147380:CDS |
| GGAACTCTTAAATGATGTGA+AGG | 0.585981 | 1_4:-7361377 | Msa0147380:CDS |
| ACACGTTGGCTCAGTTGGCA+AGG | 0.587895 | 1_4:-7364818 | Msa0147380:CDS |
| TCTGACTTTCAGGTATGTAT+GGG | 0.590095 | 1_4:-7362476 | Msa0147380:intron |
| TCAAGGATCTAACTAAGTGG+TGG | 0.593513 | 1_4:-7359947 | Msa0147380:CDS |
| AAGGCAAAATTCCAACGGAT+GGG | 0.594736 | 1_4:+7359226 | None:intergenic |
| TGCTTCAAATGAAGCTGATG+AGG | 0.599063 | 1_4:-7359384 | Msa0147380:CDS |
| CTGAGCCAACGTGTGTTGGT+AGG | 0.600412 | 1_4:+7364827 | None:intergenic |
| ATTCTACCACTCTCTTGCCA+AGG | 0.602333 | 1_4:-7361305 | Msa0147380:intron |
| TTCCAAAATGTGTCCAAGGA+GGG | 0.604051 | 1_4:-7360017 | Msa0147380:CDS |
| AAATTTCAAGCGAATGCGGA+AGG | 0.606036 | 1_4:-7364086 | Msa0147380:CDS |
| CATTTGAAATCAGTTCCCTA+AGG | 0.606114 | 1_4:+7363753 | None:intergenic |
| AGACTCGTCGTCTTCATCAG+CGG | 0.606434 | 1_4:+7361649 | None:intergenic |
| TTTGATGTCACCACTACACA+AGG | 0.606525 | 1_4:+7359861 | None:intergenic |
| GGGAAGCAAAGAGGTTGATG+TGG | 0.608554 | 1_4:-7361678 | Msa0147380:CDS |
| TGAAGACGACGAGTCTTCTG+AGG | 0.608975 | 1_4:-7361642 | Msa0147380:CDS |
| CAGTGCAAACAATTTCGAGA+AGG | 0.609135 | 1_4:+7364309 | None:intergenic |
| AAATGACGATGGTGATGTCA+AGG | 0.609943 | 1_4:-7359360 | Msa0147380:CDS |
| AAGCAAAGAGGTTGATGTGG+AGG | 0.610301 | 1_4:-7361675 | Msa0147380:CDS |
| ATACTTGATGCAATACCTGA+TGG | 0.612459 | 1_4:-7360057 | Msa0147380:CDS |
| GCCTAAAACAAAGACAGTGA+AGG | 0.613840 | 1_4:-7361416 | Msa0147380:CDS |
| CCTTCAAGGATCTAACTAAG+TGG | 0.614149 | 1_4:-7359950 | Msa0147380:CDS |
| ATTTACAGCACCAAGTCTGA+GGG | 0.614924 | 1_4:-7360331 | Msa0147380:intron |
| GAATCCAAAGGAGGTTACAG+AGG | 0.616769 | 1_4:-7361341 | Msa0147380:CDS |
| CACCAACACTGCCCTCACAT+CGG | 0.617012 | 1_4:+7364744 | None:intergenic |
| AACTTCCCTATCTATATCTG+GGG | 0.620396 | 1_4:-7361698 | Msa0147380:CDS |
| CCAACTGAGCCAACGTGTGT+TGG | 0.626778 | 1_4:+7364823 | None:intergenic |
| AAGCTTACGGATCATATCAA+GGG | 0.627367 | 1_4:+7360766 | None:intergenic |
| TGGAATGAACCACTAGGACG+TGG | 0.627795 | 1_4:-7362412 | Msa0147380:CDS |
| TCTCTTCTCATCAACATCAG+AGG | 0.630151 | 1_4:+7360549 | None:intergenic |
| ATCCTATCTATTAGAGACCG+AGG | 0.630589 | 1_4:-7362872 | Msa0147380:CDS |
| CTATATCTGGGGAAGCAAAG+AGG | 0.633804 | 1_4:-7361687 | Msa0147380:CDS |
| ATGTGAAGGCTATATGGCTG+AGG | 0.634531 | 1_4:-7361363 | Msa0147380:CDS |
| GTTGAGAAAATGCAGACAAG+TGG | 0.638859 | 1_4:-7362689 | Msa0147380:CDS |
| AAGTCCTGAGGTGCTTTAGG+TGG | 0.640658 | 1_4:+7361095 | None:intergenic |
| TCAATCAGCTGAAAGCCCCA+AGG | 0.640725 | 1_4:-7361488 | Msa0147380:intron |
| TCTGATGTTGATGAGAAGAG+AGG | 0.646244 | 1_4:-7360547 | Msa0147380:CDS |
| CCGAGGTATTGGTATGACAA+AGG | 0.646958 | 1_4:-7362855 | Msa0147380:CDS |
| ATATTACCTTGGCAAGAGAG+TGG | 0.647445 | 1_4:+7361299 | None:intergenic |
| CGAACACACAACCTTCTGCA+AGG | 0.650189 | 1_4:+7364777 | None:intergenic |
| CCAAAATGTCTTTATCAGTG+AGG | 0.650976 | 1_4:+7363296 | None:intergenic |
| GAGATCGCTTCGCAGTAATG+CGG | 0.651058 | 1_4:-7363855 | Msa0147380:CDS |
| GTGCTAAGGCAAAATTCCAA+CGG | 0.652675 | 1_4:+7359221 | None:intergenic |
| GCATCAAGTATTCATCAACT+GGG | 0.657313 | 1_4:+7360069 | None:intergenic |
| CCTTTGTCATACCAATACCT+CGG | 0.658172 | 1_4:+7362855 | None:intergenic |
| TGAAGGAAACGACTTACGAG+TGG | 0.661856 | 1_4:-7361399 | Msa0147380:CDS |
| GTTCCAAAATGTGTCCAAGG+AGG | 0.663752 | 1_4:-7360018 | Msa0147380:CDS |
| GAAGGAAACGACTTACGAGT+GGG | 0.669364 | 1_4:-7361398 | Msa0147380:CDS |
| GGATAACACTCCTTGTGTAG+TGG | 0.678484 | 1_4:-7359871 | Msa0147380:CDS |
| GCAAAGTGTCAGAATCAACA+AGG | 0.678755 | 1_4:+7360864 | None:intergenic |
| AGGTATTGGTATGACAAAGG+AGG | 0.684577 | 1_4:-7362852 | Msa0147380:CDS |
| GGAGGGTCTGAAACTCGGGA+AGG | 0.685274 | 1_4:-7360000 | Msa0147380:CDS |
| GATACATGGAATGAACCACT+AGG | 0.687380 | 1_4:-7362418 | Msa0147380:CDS |
| TAACTCTCGTACAAGTCCTG+AGG | 0.691370 | 1_4:+7361083 | None:intergenic |
| ATCAGCTGAAAGCCCCAAGG+AGG | 0.696234 | 1_4:-7361485 | Msa0147380:intron |
| TGAAGTAGTAGATCCACCAA+AGG | 0.698044 | 1_4:-7364054 | Msa0147380:CDS |
| ATGGCTGAGGAATCCAAAGG+AGG | 0.701467 | 1_4:-7361350 | Msa0147380:CDS |
| TTTGCACTGTCATTGCAATG+AGG | 0.716182 | 1_4:-7364295 | Msa0147380:CDS |
| GAATCGGTTGAAAGTCCATG+AGG | 0.719230 | 1_4:+7364008 | None:intergenic |
| TATATGGCTGAGGAATCCAA+AGG | 0.735087 | 1_4:-7361353 | Msa0147380:CDS |
| GCTGATGAGGTAAATGACGA+TGG | 0.743848 | 1_4:-7359371 | Msa0147380:CDS |
| GAGAGTAGTTAAGAACCCTG+AGG | 0.757743 | 1_4:-7359703 | Msa0147380:intron |
| GTCGTCCTACCAACACACGT+TGG | 0.762237 | 1_4:-7364832 | Msa0147380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTTATCTAAAAA+AGG | - | chr1_4:7360676-7360695 | Msa0147380:intron | 10.0% |
| !!! | TTTTTTGTTACAAAAAGTTT+AGG | + | chr1_4:7358985-7359004 | None:intergenic | 15.0% |
| !!! | TTGATTAGTTAAATTGATTA+TGG | - | chr1_4:7359991-7360010 | Msa0147380:CDS | 15.0% |
| !! | TATAATTAAAGTGATAGTTT+GGG | + | chr1_4:7361306-7361325 | None:intergenic | 15.0% |
| !! | TTATAATTAAAGTGATAGTT+TGG | + | chr1_4:7361307-7361326 | None:intergenic | 15.0% |
| !! | ATACAATATACATAATAAGT+AGG | - | chr1_4:7361620-7361639 | Msa0147380:intron | 15.0% |
| !! | TACAATATACATAATAAGTA+GGG | - | chr1_4:7361621-7361640 | Msa0147380:intron | 15.0% |
| !!! | ATCTATTTTCAATATACAAT+TGG | - | chr1_4:7361830-7361849 | Msa0147380:intron | 15.0% |
| !! | ATACAAGTATGTATAATTTA+AGG | - | chr1_4:7362009-7362028 | Msa0147380:intron | 15.0% |
| !!! | TTGATAATACTTATAATGTT+GGG | - | chr1_4:7362407-7362426 | Msa0147380:CDS | 15.0% |
| !! | CAATAAAAAAGAAACTTATT+AGG | - | chr1_4:7362829-7362848 | Msa0147380:CDS | 15.0% |
| !!! | ACTATTTTTGACAAAAATTA+AGG | + | chr1_4:7364477-7364496 | None:intergenic | 15.0% |
| !! | AAACTGATCATTTATAAAAT+GGG | + | chr1_4:7364515-7364534 | None:intergenic | 15.0% |
| !! | AAAACTGATCATTTATAAAA+TGG | + | chr1_4:7364516-7364535 | None:intergenic | 15.0% |
| !!! | TAATAAGGATATTTTCCTTA+GGG | - | chr1_4:7359854-7359873 | Msa0147380:CDS | 20.0% |
| !! | ATGTACAAATTATAAATGCA+AGG | + | chr1_4:7360237-7360256 | None:intergenic | 20.0% |
| !!! | CTGTAAGTTTTTTAATGATA+AGG | - | chr1_4:7360436-7360455 | Msa0147380:intron | 20.0% |
| !!! | TGTTTTAATGCTGTTTTAAT+GGG | - | chr1_4:7360474-7360493 | Msa0147380:CDS | 20.0% |
| !!! | TGTTTTAATGGGTTTATTTT+TGG | - | chr1_4:7360485-7360504 | Msa0147380:CDS | 20.0% |
| !!! | CTTAACTTGTAAAACTATTT+GGG | - | chr1_4:7360535-7360554 | Msa0147380:CDS | 20.0% |
| !!! | TTCAGGTATGTATATATTTT+TGG | - | chr1_4:7360833-7360852 | Msa0147380:CDS | 20.0% |
| !!! | TCAGGTATGTATATATTTTT+GGG | - | chr1_4:7360834-7360853 | Msa0147380:CDS | 20.0% |
| !! | ATAATTAAAGTGATAGTTTG+GGG | + | chr1_4:7361305-7361324 | None:intergenic | 20.0% |
| !! | ACTATCACTTTAATTATAAC+CGG | - | chr1_4:7361308-7361327 | Msa0147380:CDS | 20.0% |
| !! | AAGGTTATAAATCAAATTTG+TGG | - | chr1_4:7361505-7361524 | Msa0147380:intron | 20.0% |
| !! | ACAATATACATAATAAGTAG+GGG | - | chr1_4:7361622-7361641 | Msa0147380:intron | 20.0% |
| !! | GGTTAAATTAAATTATCACA+GGG | - | chr1_4:7361692-7361711 | Msa0147380:CDS | 20.0% |
| !! | ATATCTATATATGTTCAGTT+GGG | + | chr1_4:7362371-7362390 | None:intergenic | 20.0% |
| !!! | CTTGATAATACTTATAATGT+TGG | - | chr1_4:7362406-7362425 | Msa0147380:CDS | 20.0% |
| !! | TGATAATACTTATAATGTTG+GGG | - | chr1_4:7362408-7362427 | Msa0147380:CDS | 20.0% |
| !!! | TTCTTAACAAATGTTCTTTT+TGG | - | chr1_4:7362721-7362740 | Msa0147380:intron | 20.0% |
| !!! | TTTTTTTCAATATATGCTAC+AGG | - | chr1_4:7363514-7363533 | Msa0147380:intron | 20.0% |
| !! | ATGTTGAAGACATAAAATAA+GGG | + | chr1_4:7363975-7363994 | None:intergenic | 20.0% |
| !! | TATGTTGAAGACATAAAATA+AGG | + | chr1_4:7363976-7363995 | None:intergenic | 20.0% |
| !!! | GATCAGTTTTTTTTTTTTAG+AGG | - | chr1_4:7364526-7364545 | Msa0147380:intron | 20.0% |
| !! | AACACAATGTTTATCAAATT+TGG | + | chr1_4:7364611-7364630 | None:intergenic | 20.0% |
| ! | TTGTTACAAAAAGTTTAGGT+GGG | + | chr1_4:7358981-7359000 | None:intergenic | 25.0% |
| ! | TTTGTTACAAAAAGTTTAGG+TGG | + | chr1_4:7358982-7359001 | None:intergenic | 25.0% |
| !! | TAAGTGAAAATTTGTTCGTT+AGG | - | chr1_4:7359509-7359528 | Msa0147380:CDS | 25.0% |
| !! | GTAATAAGGATATTTTCCTT+AGG | - | chr1_4:7359853-7359872 | Msa0147380:CDS | 25.0% |
| !!! | CAAGTTAGAATTGATTTTGA+AGG | - | chr1_4:7360101-7360120 | Msa0147380:intron | 25.0% |
| !!! | AATTGTTTTACATGTTTGGT+TGG | + | chr1_4:7360152-7360171 | None:intergenic | 25.0% |
| !!! | GTAGAATTGTTTTACATGTT+TGG | + | chr1_4:7360156-7360175 | None:intergenic | 25.0% |
| !! | TAAAACAATTCTACGCTTTT+AGG | - | chr1_4:7360162-7360181 | Msa0147380:intron | 25.0% |
| !! | GGATTTTCAAAGTATATGTT+TGG | + | chr1_4:7360216-7360235 | None:intergenic | 25.0% |
| ! | ACAAATGAGTTCTATATTGT+AGG | - | chr1_4:7360278-7360297 | Msa0147380:CDS | 25.0% |
| ! | ACAATTAAAGTATACAAACC+TGG | + | chr1_4:7360380-7360399 | None:intergenic | 25.0% |
| ! | ATTAAAACACCATCATTCTT+TGG | + | chr1_4:7360463-7360482 | None:intergenic | 25.0% |
| !!! | GTGTTTTAATGCTGTTTTAA+TGG | - | chr1_4:7360473-7360492 | Msa0147380:CDS | 25.0% |
| ! | GCTTATATGAACTTATCTAT+TGG | - | chr1_4:7360512-7360531 | Msa0147380:CDS | 25.0% |
| !!! | GCTTAACTTGTAAAACTATT+TGG | - | chr1_4:7360534-7360553 | Msa0147380:CDS | 25.0% |
| ! | ACAAGCTAAAAACATATAAG+CGG | + | chr1_4:7360575-7360594 | None:intergenic | 25.0% |
| ! | GAGGATTTAGTAAAGAATTT+GGG | - | chr1_4:7360789-7360808 | Msa0147380:CDS | 25.0% |
| !!! | CAGGTATGTATATATTTTTG+GGG | - | chr1_4:7360835-7360854 | Msa0147380:CDS | 25.0% |
| !!! | CTTGAAATTGCTTTTTTGAT+TGG | - | chr1_4:7361069-7361088 | Msa0147380:CDS | 25.0% |
| ! | AGATCATTTCCAAAATCAAT+AGG | + | chr1_4:7361129-7361148 | None:intergenic | 25.0% |
| !!! | TGATTTTAAAATCAAGCAAC+CGG | + | chr1_4:7361330-7361349 | None:intergenic | 25.0% |
| ! | TTGTTCATGCTTAAGAATAT+AGG | - | chr1_4:7361474-7361493 | Msa0147380:CDS | 25.0% |
| ! | CAATATACATAATAAGTAGG+GGG | - | chr1_4:7361623-7361642 | Msa0147380:intron | 25.0% |
| ! | GGGTTAAATTAAATTATCAC+AGG | - | chr1_4:7361691-7361710 | Msa0147380:CDS | 25.0% |
| ! | AAACTTCAAGAAACATAGTT+AGG | + | chr1_4:7361744-7361763 | None:intergenic | 25.0% |
| ! | GTTTCTTGAAGTTTAAAAGA+TGG | - | chr1_4:7361750-7361769 | Msa0147380:intron | 25.0% |
| !!! | TAATAACTTCTGTTTTTCAC+AGG | - | chr1_4:7361872-7361891 | Msa0147380:intron | 25.0% |
| ! | GTATAATTTAAGGATTCAGT+TGG | - | chr1_4:7362019-7362038 | Msa0147380:intron | 25.0% |
| ! | GATATCTATATATGTTCAGT+TGG | + | chr1_4:7362372-7362391 | None:intergenic | 25.0% |
| !!! | ATATAGATATCCACTTTTCT+CGG | - | chr1_4:7362381-7362400 | Msa0147380:CDS | 25.0% |
| ! | TTCTGCATCAAAAGTTAAAT+TGG | + | chr1_4:7363046-7363065 | None:intergenic | 25.0% |
| ! | TTTGGAAAATCCATTAAACT+TGG | - | chr1_4:7363123-7363142 | Msa0147380:intron | 25.0% |
| !! | TTTTGATAAACGATTTCTGT+TGG | + | chr1_4:7363166-7363185 | None:intergenic | 25.0% |
| ! | CCTATAAGAGTTAAATAACA+AGG | + | chr1_4:7363219-7363238 | None:intergenic | 25.0% |
| !!! | CCTTGTTATTTAACTCTTAT+AGG | - | chr1_4:7363216-7363235 | Msa0147380:intron | 25.0% |
| ! | ACATTGTTAACTGATGAAAT+GGG | + | chr1_4:7363253-7363272 | None:intergenic | 25.0% |
| ! | TACATTGTTAACTGATGAAA+TGG | + | chr1_4:7363254-7363273 | None:intergenic | 25.0% |
| !! | AAGGATATCTTTTACATAAC+TGG | - | chr1_4:7363363-7363382 | Msa0147380:intron | 25.0% |
| !! | TTTTATGTCTTCAACATAGT+TGG | - | chr1_4:7363978-7363997 | Msa0147380:intron | 25.0% |
| ! | TTTATGTCTTCAACATAGTT+GGG | - | chr1_4:7363979-7363998 | Msa0147380:intron | 25.0% |
| !! | ATTCTAGAAGCAAAATCTTT+GGG | + | chr1_4:7364113-7364132 | None:intergenic | 25.0% |
| !! | AATTCTAGAAGCAAAATCTT+TGG | + | chr1_4:7364114-7364133 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTCGTAAGTTAA+AGG | - | chr1_4:7364372-7364391 | Msa0147380:intron | 25.0% |
| !! | TTGCAATGCATTTTAAATGT+TGG | + | chr1_4:7364586-7364605 | None:intergenic | 25.0% |
| !! | ATGATAGATGTTTTATAGCT+GGG | + | chr1_4:7364640-7364659 | None:intergenic | 25.0% |
| !! | ATAAGCAGAAGTATCACAAA+CGG | - | chr1_4:7359007-7359026 | Msa0147380:three_prime_UTR | 30.0% |
| ATATACTCTCTCTTTGTTAC+TGG | + | chr1_4:7359237-7359256 | None:intergenic | 30.0% | |
| ACGAAATTGAAGAATGAAGA+AGG | + | chr1_4:7359421-7359440 | None:intergenic | 30.0% | |
| TCAAAAATTTCAAGCGAATG+CGG | - | chr1_4:7359532-7359551 | Msa0147380:CDS | 30.0% | |
| ATTGCAATTTGTGTGAATGA+AGG | - | chr1_4:7359724-7359743 | Msa0147380:CDS | 30.0% | |
| TTGCAATTTGTGTGAATGAA+GGG | - | chr1_4:7359725-7359744 | Msa0147380:CDS | 30.0% | |
| CAATTCGCTTTACAGTAATA+AGG | - | chr1_4:7359839-7359858 | Msa0147380:CDS | 30.0% | |
| !!! | GTACGTTTTGAGTTTTGAAT+CGG | - | chr1_4:7359940-7359959 | Msa0147380:CDS | 30.0% |
| GAAGTTAGAATGAAAAGCTT+TGG | + | chr1_4:7360082-7360101 | None:intergenic | 30.0% | |
| CAAAATGTCTTTATCAGTGA+GGG | + | chr1_4:7360328-7360347 | None:intergenic | 30.0% | |
| ! | CTCACTGATAAAGACATTTT+GGG | - | chr1_4:7360327-7360346 | Msa0147380:intron | 30.0% |
| !!! | TAATGGGTTTATTTTTGGAC+TGG | - | chr1_4:7360490-7360509 | Msa0147380:CDS | 30.0% |
| AAGCTATCATGGAAAACTTA+TGG | + | chr1_4:7360600-7360619 | None:intergenic | 30.0% | |
| ! | GTTTTCACATAAGCTATAAG+TGG | + | chr1_4:7360630-7360649 | None:intergenic | 30.0% |
| GATGCAGATTAAGTTAGATA+AGG | - | chr1_4:7360719-7360738 | Msa0147380:intron | 30.0% | |
| GGAGGATTTAGTAAAGAATT+TGG | - | chr1_4:7360788-7360807 | Msa0147380:CDS | 30.0% | |
| TTGCAATTTCAGAAGATACA+TGG | - | chr1_4:7361190-7361209 | Msa0147380:intron | 30.0% | |
| TAAAATACACCTCAAAGAAG+AGG | - | chr1_4:7361242-7361261 | Msa0147380:intron | 30.0% | |
| !!! | AGTTCTTATTTTTCTCTCCA+TGG | - | chr1_4:7361380-7361399 | Msa0147380:CDS | 30.0% |
| !!! | GTTCTTATTTTTCTCTCCAT+GGG | - | chr1_4:7361381-7361400 | Msa0147380:CDS | 30.0% |
| AAGAATATAGGTGTTCTTGA+AGG | - | chr1_4:7361486-7361505 | Msa0147380:intron | 30.0% | |
| TTATAGCTTCTTTAACTCTC+TGG | - | chr1_4:7361532-7361551 | Msa0147380:intron | 30.0% | |
| CTTAGAAGGTAAACTCTTAT+GGG | - | chr1_4:7361671-7361690 | Msa0147380:CDS | 30.0% | |
| TTAAATTATCACAGGGTGAT+TGG | - | chr1_4:7361699-7361718 | Msa0147380:CDS | 30.0% | |
| ! | AATTGGTCTATTGCTAAATC+TGG | - | chr1_4:7361847-7361866 | Msa0147380:intron | 30.0% |
| TTAACTTCCCTATCTATATC+TGG | - | chr1_4:7361922-7361941 | Msa0147380:intron | 30.0% | |
| TAACTTCCCTATCTATATCT+GGG | - | chr1_4:7361923-7361942 | Msa0147380:intron | 30.0% | |
| GCTGATTGAAGAGTAAAATA+TGG | + | chr1_4:7362123-7362142 | None:intergenic | 30.0% | |
| TAAATGATGTGAAGGCTATA+TGG | - | chr1_4:7362253-7362272 | Msa0147380:intron | 30.0% | |
| CTCAAAAAGCTCAAATACTT+GGG | + | chr1_4:7362641-7362660 | None:intergenic | 30.0% | |
| ACTCAAAAAGCTCAAATACT+TGG | + | chr1_4:7362642-7362661 | None:intergenic | 30.0% | |
| !! | ACAAATGTTCTTTTTGGCAT+TGG | - | chr1_4:7362727-7362746 | Msa0147380:intron | 30.0% |
| !! | CAAATGTTCTTTTTGGCATT+GGG | - | chr1_4:7362728-7362747 | Msa0147380:intron | 30.0% |
| ATTTCTCGTGATACATTCAA+TGG | + | chr1_4:7362783-7362802 | None:intergenic | 30.0% | |
| TGACAAAGAAAAGAAAGGTA+TGG | - | chr1_4:7362905-7362924 | Msa0147380:intron | 30.0% | |
| CAAGAATCCTAATTCTCTTA+TGG | - | chr1_4:7362953-7362972 | Msa0147380:intron | 30.0% | |
| TGAGAAACCATAAGAGAATT+AGG | + | chr1_4:7362963-7362982 | None:intergenic | 30.0% | |
| CTCAATGATACCAAGTTTAA+TGG | + | chr1_4:7363136-7363155 | None:intergenic | 30.0% | |
| CATTAAACTTGGTATCATTG+AGG | - | chr1_4:7363134-7363153 | Msa0147380:intron | 30.0% | |
| CATTGTTAACTGATGAAATG+GGG | + | chr1_4:7363252-7363271 | None:intergenic | 30.0% | |
| ! | TTAACAATGTAGCTGATTCT+TGG | - | chr1_4:7363263-7363282 | Msa0147380:intron | 30.0% |
| ! | TACATATCTAGAATGAAAGC+TGG | - | chr1_4:7363336-7363355 | Msa0147380:intron | 30.0% |
| TCTGAAGAAGAAAAACTTTG+AGG | - | chr1_4:7363428-7363447 | Msa0147380:intron | 30.0% | |
| TCTTATCTTCATAATCCATC+AGG | + | chr1_4:7363583-7363602 | None:intergenic | 30.0% | |
| ! | TTCTAAAGACAAGGAACTAA+AGG | - | chr1_4:7363646-7363665 | Msa0147380:intron | 30.0% |
| ! | CAAATTTAGAATGTACCTCA+GGG | + | chr1_4:7363937-7363956 | None:intergenic | 30.0% |
| ! | TCAAATTTAGAATGTACCTC+AGG | + | chr1_4:7363938-7363957 | None:intergenic | 30.0% |
| !!! | TTTTTTACTCATGTTGCTGT+CGG | - | chr1_4:7364310-7364329 | Msa0147380:CDS | 30.0% |
| CTGATCATTTATAAAATGGG+TGG | + | chr1_4:7364512-7364531 | None:intergenic | 30.0% | |
| ! | CATGATAGATGTTTTATAGC+TGG | + | chr1_4:7364641-7364660 | None:intergenic | 30.0% |
| ! | AATTTCTTGAAGTCTTATGC+GGG | + | chr1_4:7364786-7364805 | None:intergenic | 30.0% |
| ! | CAATTTCTTGAAGTCTTATG+CGG | + | chr1_4:7364787-7364806 | None:intergenic | 30.0% |
| CTTCAAGAAATTGTTTAGTG+TGG | - | chr1_4:7364794-7364813 | Msa0147380:CDS | 30.0% | |
| ! | ACAAAAAGTTTAGGTGGGTT+CGG | + | chr1_4:7358976-7358995 | None:intergenic | 35.0% |
| ! | AAGTGTCACTATGTAATGGA+TGG | + | chr1_4:7359072-7359091 | None:intergenic | 35.0% |
| ! | GGTTAAGTGTCACTATGTAA+TGG | + | chr1_4:7359076-7359095 | None:intergenic | 35.0% |
| ! | TTACTGGAATTTTCCTTGCT+GGG | + | chr1_4:7359221-7359240 | None:intergenic | 35.0% |
| AAGAGAGAGAATAAGAAGAG+TGG | + | chr1_4:7359369-7359388 | None:intergenic | 35.0% | |
| TTTGTGTGAATGAAGGGAAT+CGG | - | chr1_4:7359731-7359750 | Msa0147380:CDS | 35.0% | |
| AGTTTCAAGCTGAAGTTTCA+AGG | - | chr1_4:7359799-7359818 | Msa0147380:CDS | 35.0% | |
| ! | CATTTGAAATCAGTTCCCTA+AGG | + | chr1_4:7359872-7359891 | None:intergenic | 35.0% |
| ! | TATATGTTTGGTTCCACTTC+GGG | + | chr1_4:7360204-7360223 | None:intergenic | 35.0% |
| ! | GTATATGTTTGGTTCCACTT+CGG | + | chr1_4:7360205-7360224 | None:intergenic | 35.0% |
| GAGTTCTATATTGTAGGCAT+TGG | - | chr1_4:7360284-7360303 | Msa0147380:CDS | 35.0% | |
| CCAAAATGTCTTTATCAGTG+AGG | + | chr1_4:7360329-7360348 | None:intergenic | 35.0% | |
| ! | CCTCACTGATAAAGACATTT+TGG | - | chr1_4:7360326-7360345 | Msa0147380:CDS | 35.0% |
| !! | GATAAAGACATTTTGGGTGA+AGG | - | chr1_4:7360333-7360352 | Msa0147380:intron | 35.0% |
| TGATAAGGACCAAAGAATGA+TGG | - | chr1_4:7360451-7360470 | Msa0147380:CDS | 35.0% | |
| ! | GTGGTTTTCATAAGCTATCA+TGG | + | chr1_4:7360611-7360630 | None:intergenic | 35.0% |
| ! | TGAAGTTCCAGATTTTGCTA+TGG | + | chr1_4:7360817-7360836 | None:intergenic | 35.0% |
| ! | ATAGCAAAATCTGGAACTTC+AGG | - | chr1_4:7360816-7360835 | Msa0147380:CDS | 35.0% |
| !! | CTGGTGTGAAGGATTTTAAT+TGG | - | chr1_4:7360887-7360906 | Msa0147380:intron | 35.0% |
| AGTGGTGATCTCAATCTAAT+TGG | - | chr1_4:7360951-7360970 | Msa0147380:intron | 35.0% | |
| GTGGTGATCTCAATCTAATT+GGG | - | chr1_4:7360952-7360971 | Msa0147380:intron | 35.0% | |
| CTCAATCTAATTGGGCAATT+TGG | - | chr1_4:7360960-7360979 | Msa0147380:intron | 35.0% | |
| !!! | CTTTTTTGATTGGTATGTCG+CGG | - | chr1_4:7361079-7361098 | Msa0147380:CDS | 35.0% |
| !!! | TTATGCCAGCCTATTGATTT+TGG | - | chr1_4:7361117-7361136 | Msa0147380:CDS | 35.0% |
| CATTTCCAAAATCAATAGGC+TGG | + | chr1_4:7361125-7361144 | None:intergenic | 35.0% | |
| TTGGAAATGATCTGACTTTC+AGG | - | chr1_4:7361136-7361155 | Msa0147380:CDS | 35.0% | |
| ! | ATCTGACTTTCAGGTATGTA+TGG | - | chr1_4:7361145-7361164 | Msa0147380:CDS | 35.0% |
| ! | TCTGACTTTCAGGTATGTAT+GGG | - | chr1_4:7361146-7361165 | Msa0147380:CDS | 35.0% |
| GTTAAACTAAACGATACCCA+TGG | + | chr1_4:7361400-7361419 | None:intergenic | 35.0% | |
| AGTGCAAATTGTTGACATCT+AGG | + | chr1_4:7361422-7361441 | None:intergenic | 35.0% | |
| CTTAAGCATGAACAAAGTGT+AGG | + | chr1_4:7361469-7361488 | None:intergenic | 35.0% | |
| CCATAAGAGTTTACCTTCTA+AGG | + | chr1_4:7361673-7361692 | None:intergenic | 35.0% | |
| CCTTAGAAGGTAAACTCTTA+TGG | - | chr1_4:7361670-7361689 | Msa0147380:CDS | 35.0% | |
| !! | CTTCTGTTTTTCACAGGAAT+TGG | - | chr1_4:7361878-7361897 | Msa0147380:intron | 35.0% |
| AACTTCCCTATCTATATCTG+GGG | - | chr1_4:7361924-7361943 | Msa0147380:intron | 35.0% | |
| !!! | TCCTTCACTGTCTTTGTTTT+AGG | + | chr1_4:7362210-7362229 | None:intergenic | 35.0% |
| GGAACTCTTAAATGATGTGA+AGG | - | chr1_4:7362245-7362264 | Msa0147380:intron | 35.0% | |
| TAGTGATGGCAATATTACCT+TGG | + | chr1_4:7362337-7362356 | None:intergenic | 35.0% | |
| GGGTATCACATAAATAGTGA+TGG | + | chr1_4:7362351-7362370 | None:intergenic | 35.0% | |
| TCTAACATACAACTTCAGGT+TGG | + | chr1_4:7362582-7362601 | None:intergenic | 35.0% | |
| AAGCTTACGGATCATATCAA+GGG | + | chr1_4:7362859-7362878 | None:intergenic | 35.0% | |
| TCCACTGACAAAGAAAAGAA+AGG | - | chr1_4:7362900-7362919 | Msa0147380:intron | 35.0% | |
| ! | ACCTTTCTTTTCTTTGTCAG+TGG | + | chr1_4:7362904-7362923 | None:intergenic | 35.0% |
| TGATAAACGATTTCTGTTGG+TGG | + | chr1_4:7363163-7363182 | None:intergenic | 35.0% | |
| ! | ATTTTCCAGTTGTTCTTTGC+TGG | + | chr1_4:7363391-7363410 | None:intergenic | 35.0% |
| GCATCAAGTATTCATCAACT+GGG | + | chr1_4:7363556-7363575 | None:intergenic | 35.0% | |
| TGCATCAAGTATTCATCAAC+TGG | + | chr1_4:7363557-7363576 | None:intergenic | 35.0% | |
| ATACTTGATGCAATACCTGA+TGG | - | chr1_4:7363565-7363584 | Msa0147380:intron | 35.0% | |
| ! | ATCGACATTGTCATTTGCAA+GGG | + | chr1_4:7363708-7363727 | None:intergenic | 35.0% |
| TGGTGACATCAAAATTTGGT+TGG | - | chr1_4:7363771-7363790 | Msa0147380:CDS | 35.0% | |
| ! | TTCAACATAGTTGGGCTTTT+TGG | - | chr1_4:7363987-7364006 | Msa0147380:intron | 35.0% |
| !!! | GGCTTTTTGGTTTACTCAAT+TGG | - | chr1_4:7364000-7364019 | Msa0147380:CDS | 35.0% |
| !! | ACTCAATTGGCTTACTTTTC+AGG | - | chr1_4:7364013-7364032 | Msa0147380:CDS | 35.0% |
| TAAGACTAATGACTGTGCTA+AGG | + | chr1_4:7364418-7364437 | None:intergenic | 35.0% | |
| ! | TAAATGTTGGTTACCATTCG+AGG | + | chr1_4:7364573-7364592 | None:intergenic | 35.0% |
| !! | CAATATTGCTTTTCGTACTG+CGG | + | chr1_4:7364684-7364703 | None:intergenic | 35.0% |
| ! | ACTACTACTGTCCTCAATTT+TGG | - | chr1_4:7364718-7364737 | Msa0147380:intron | 35.0% |
| GAGAAATTCTGCCAAAATTG+AGG | + | chr1_4:7364732-7364751 | None:intergenic | 35.0% | |
| TACCTCTATAAGTGCCCTTT+GGG | - | chr1_4:7358914-7358933 | Msa0147380:three_prime_UTR | 40.0% | |
| !! | AGAAGTATCACAAACGGCAA+TGG | - | chr1_4:7359013-7359032 | Msa0147380:three_prime_UTR | 40.0% |
| AAATTCTGAGTCGTCCATGT+GGG | - | chr1_4:7359045-7359064 | Msa0147380:three_prime_UTR | 40.0% | |
| ! | GTTACTGGAATTTTCCTTGC+TGG | + | chr1_4:7359222-7359241 | None:intergenic | 40.0% |
| ! | GAAGGTTCTAACAGAACGTT+TGG | + | chr1_4:7359298-7359317 | None:intergenic | 40.0% |
| CAGTGCAAACAATTTCGAGA+AGG | + | chr1_4:7359316-7359335 | None:intergenic | 40.0% | |
| TTTGCACTGTCATTGCAATG+AGG | - | chr1_4:7359327-7359346 | Msa0147380:three_prime_UTR | 40.0% | |
| GAGAGAATAAGAAGAGTGGA+AGG | + | chr1_4:7359365-7359384 | None:intergenic | 40.0% | |
| AAATTTCAAGCGAATGCGGA+AGG | - | chr1_4:7359536-7359555 | Msa0147380:CDS | 40.0% | |
| TGAAGTAGTAGATCCACCAA+AGG | - | chr1_4:7359568-7359587 | Msa0147380:CDS | 40.0% | |
| ! | AGTTTTTCTTCCACCTTTGG+TGG | + | chr1_4:7359584-7359603 | None:intergenic | 40.0% |
| CCAAAGGTGGAAGAAAAACT+CGG | - | chr1_4:7359584-7359603 | Msa0147380:CDS | 40.0% | |
| CCTCTTAACGACATCTGAAT+CGG | + | chr1_4:7359633-7359652 | None:intergenic | 40.0% | |
| AGCTGAAGTTTCAAGGCTTA+TGG | - | chr1_4:7359806-7359825 | Msa0147380:CDS | 40.0% | |
| !! | TCGGTTTGTGTTTAGTTCTG+TGG | - | chr1_4:7359959-7359978 | Msa0147380:CDS | 40.0% |
| !! | TGTAGGCATTGGACAAGATT+AGG | - | chr1_4:7360295-7360314 | Msa0147380:CDS | 40.0% |
| TGTCTTTATCAGTGAGGGAT+AGG | + | chr1_4:7360323-7360342 | None:intergenic | 40.0% | |
| ACAAACCTGGATTTCAAGCT+TGG | + | chr1_4:7360367-7360386 | None:intergenic | 40.0% | |
| ATCCTATCTATTAGAGACCG+AGG | - | chr1_4:7360750-7360769 | Msa0147380:CDS | 40.0% | |
| TACCTCGGTCTCTAATAGAT+AGG | + | chr1_4:7360755-7360774 | None:intergenic | 40.0% | |
| TCTATTAGAGACCGAGGTAT+TGG | - | chr1_4:7360756-7360775 | Msa0147380:CDS | 40.0% | |
| CCTTTGTCATACCAATACCT+CGG | + | chr1_4:7360770-7360789 | None:intergenic | 40.0% | |
| !! | AGGTATTGGTATGACAAAGG+AGG | - | chr1_4:7360770-7360789 | Msa0147380:CDS | 40.0% |
| TTGGGTACCATAGCAAAATC+TGG | - | chr1_4:7360807-7360826 | Msa0147380:CDS | 40.0% | |
| GTTGAGAAAATGCAGACAAG+TGG | - | chr1_4:7360933-7360952 | Msa0147380:intron | 40.0% | |
| ! | CTAATTGGGCAATTTGGAGT+TGG | - | chr1_4:7360966-7360985 | Msa0147380:intron | 40.0% |
| ! | GTATGGGAATCTAAAGCTGA+TGG | - | chr1_4:7361162-7361181 | Msa0147380:CDS | 40.0% |
| GATACATGGAATGAACCACT+AGG | - | chr1_4:7361204-7361223 | Msa0147380:intron | 40.0% | |
| TGGAGTATGCATACCTTAGA+AGG | - | chr1_4:7361657-7361676 | Msa0147380:CDS | 40.0% | |
| TGCTTCCCCAGATATAGATA+GGG | + | chr1_4:7361932-7361951 | None:intergenic | 40.0% | |
| TTGCTTCCCCAGATATAGAT+AGG | + | chr1_4:7361933-7361952 | None:intergenic | 40.0% | |
| TCATCTTCACTTTCCTCCTT+GGG | + | chr1_4:7362153-7362172 | None:intergenic | 40.0% | |
| TTCATCTTCACTTTCCTCCT+TGG | + | chr1_4:7362154-7362173 | None:intergenic | 40.0% | |
| GCCTAAAACAAAGACAGTGA+AGG | - | chr1_4:7362206-7362225 | Msa0147380:intron | 40.0% | |
| TATATGGCTGAGGAATCCAA+AGG | - | chr1_4:7362269-7362288 | Msa0147380:intron | 40.0% | |
| ATATTACCTTGGCAAGAGAG+TGG | + | chr1_4:7362326-7362345 | None:intergenic | 40.0% | |
| TTATCAAGCTCCGAGAAAAG+TGG | + | chr1_4:7362394-7362413 | None:intergenic | 40.0% | |
| GCGATGACAAACCTTTATCA+TGG | - | chr1_4:7362453-7362472 | Msa0147380:CDS | 40.0% | |
| GTAAAGTGGCTCCATGATAA+AGG | + | chr1_4:7362467-7362486 | None:intergenic | 40.0% | |
| CTCGTCTAACATACAACTTC+AGG | + | chr1_4:7362586-7362605 | None:intergenic | 40.0% | |
| !! | TTCTTTTTGGCATTGGGAAC+AGG | - | chr1_4:7362734-7362753 | Msa0147380:intron | 40.0% |
| !! | TCTTTTTGGCATTGGGAACA+GGG | - | chr1_4:7362735-7362754 | Msa0147380:intron | 40.0% |
| ! | GCAAAGTGTCAGAATCAACA+AGG | + | chr1_4:7362761-7362780 | None:intergenic | 40.0% |
| CAAGCTTACGGATCATATCA+AGG | + | chr1_4:7362860-7362879 | None:intergenic | 40.0% | |
| AGGTATGGTGTAATGACTGT+TGG | - | chr1_4:7362920-7362939 | Msa0147380:intron | 40.0% | |
| GGTATGGTGTAATGACTGTT+GGG | - | chr1_4:7362921-7362940 | Msa0147380:intron | 40.0% | |
| CGCTCGCTTACATTTGAAAA+GGG | + | chr1_4:7362987-7363006 | None:intergenic | 40.0% | |
| ! | CCTTTTCAAATGTAAGCGAG+CGG | - | chr1_4:7362985-7363004 | Msa0147380:intron | 40.0% |
| AAAGTCAGTGAAGGGAATTC+AGG | + | chr1_4:7363014-7363033 | None:intergenic | 40.0% | |
| AGAAGCGAAAAGTCAGTGAA+GGG | + | chr1_4:7363022-7363041 | None:intergenic | 40.0% | |
| TAGAAGCGAAAAGTCAGTGA+AGG | + | chr1_4:7363023-7363042 | None:intergenic | 40.0% | |
| TCTCTTCTCATCAACATCAG+AGG | + | chr1_4:7363076-7363095 | None:intergenic | 40.0% | |
| ! | TCTGATGTTGATGAGAAGAG+AGG | - | chr1_4:7363075-7363094 | Msa0147380:intron | 40.0% |
| !! | ACCAAGTTCTGGAATGAGTT+TGG | - | chr1_4:7363105-7363124 | Msa0147380:intron | 40.0% |
| TCCAAACTCATTCCAGAACT+TGG | + | chr1_4:7363109-7363128 | None:intergenic | 40.0% | |
| TATTTACAGCACCAAGTCTG+AGG | - | chr1_4:7363290-7363309 | Msa0147380:CDS | 40.0% | |
| ATTTACAGCACCAAGTCTGA+GGG | - | chr1_4:7363291-7363310 | Msa0147380:CDS | 40.0% | |
| TGTCAATTTACCCTCAGACT+TGG | + | chr1_4:7363304-7363323 | None:intergenic | 40.0% | |
| TAGAATGAAAGCTGGACAGA+AGG | - | chr1_4:7363344-7363363 | Msa0147380:intron | 40.0% | |
| ! | TTTTCTTCTTCAGACGCTCA+AGG | + | chr1_4:7363422-7363441 | None:intergenic | 40.0% |
| GAAGTTCCAAAATGTGTCCA+AGG | - | chr1_4:7363601-7363620 | Msa0147380:intron | 40.0% | |
| TTCCAAAATGTGTCCAAGGA+GGG | - | chr1_4:7363605-7363624 | Msa0147380:intron | 40.0% | |
| GGAACTAAAGGAATCCTTCA+AGG | - | chr1_4:7363658-7363677 | Msa0147380:intron | 40.0% | |
| CCACTTAGTTAGATCCTTGA+AGG | + | chr1_4:7363675-7363694 | None:intergenic | 40.0% | |
| CCTTCAAGGATCTAACTAAG+TGG | - | chr1_4:7363672-7363691 | Msa0147380:intron | 40.0% | |
| TCAAGGATCTAACTAAGTGG+TGG | - | chr1_4:7363675-7363694 | Msa0147380:intron | 40.0% | |
| ! | CATCGACATTGTCATTTGCA+AGG | + | chr1_4:7363709-7363728 | None:intergenic | 40.0% |
| TGTGAAGATATCCAACCGAT+TGG | - | chr1_4:7363730-7363749 | Msa0147380:intron | 40.0% | |
| !! | CACAAGGAGTGTTATCCAAT+CGG | + | chr1_4:7363748-7363767 | None:intergenic | 40.0% |
| ATTTGGTTGGAGTGCAAACA+TGG | - | chr1_4:7363784-7363803 | Msa0147380:CDS | 40.0% | |
| AAAAAGCAAGCATACATGCG+CGG | - | chr1_4:7363842-7363861 | Msa0147380:CDS | 40.0% | |
| ! | TCATCAGCTTCATTTGAAGC+AGG | + | chr1_4:7364239-7364258 | None:intergenic | 40.0% |
| TGCTTCAAATGAAGCTGATG+AGG | - | chr1_4:7364238-7364257 | Msa0147380:CDS | 40.0% | |
| ! | AAATGACGATGGTGATGTCA+AGG | - | chr1_4:7364262-7364281 | Msa0147380:CDS | 40.0% |
| !! | TGTCGGTTGCAGTTATTTCT+TGG | - | chr1_4:7364327-7364346 | Msa0147380:intron | 40.0% |
| AAGGCAAAATTCCAACGGAT+GGG | + | chr1_4:7364399-7364418 | None:intergenic | 40.0% | |
| TAAGGCAAAATTCCAACGGA+TGG | + | chr1_4:7364400-7364419 | None:intergenic | 40.0% | |
| GTGCTAAGGCAAAATTCCAA+CGG | + | chr1_4:7364404-7364423 | None:intergenic | 40.0% | |
| ! | TCAGCTTTTATTGCCTCGAA+TGG | - | chr1_4:7364557-7364576 | Msa0147380:intron | 40.0% |
| CGCAGTACGAAAAGCAATAT+TGG | - | chr1_4:7364682-7364701 | Msa0147380:intron | 40.0% | |
| GTACCTCTATAAGTGCCCTT+TGG | - | chr1_4:7358913-7358932 | Msa0147380:three_prime_UTR | 45.0% | |
| AGTATCACAAACGGCAATGG+TGG | - | chr1_4:7359016-7359035 | Msa0147380:three_prime_UTR | 45.0% | |
| GAAATTCTGAGTCGTCCATG+TGG | - | chr1_4:7359044-7359063 | Msa0147380:three_prime_UTR | 45.0% | |
| !! | ATGTAATGGATGGACCCACA+TGG | + | chr1_4:7359062-7359081 | None:intergenic | 45.0% |
| TTCGACGTGGAGATGTTAAG+TGG | + | chr1_4:7359097-7359116 | None:intergenic | 45.0% | |
| TTGATCTAGTTGCTTCGACG+TGG | + | chr1_4:7359110-7359129 | None:intergenic | 45.0% | |
| !! | GCAACGTGGCGTTGATTAAT+TGG | + | chr1_4:7359134-7359153 | None:intergenic | 45.0% |
| ATGATCTGACGGTGAAGGAT+GGG | + | chr1_4:7359163-7359182 | None:intergenic | 45.0% | |
| CTGTCATTGCAATGAGGAAG+TGG | - | chr1_4:7359333-7359352 | Msa0147380:exon | 45.0% | |
| CTTCTTCTTCTCGCAGATCA+AGG | - | chr1_4:7359389-7359408 | Msa0147380:CDS | 45.0% | |
| AGTAGTAGATCCACCAAAGG+TGG | - | chr1_4:7359571-7359590 | Msa0147380:CDS | 45.0% | |
| ! | CCGAGTTTTTCTTCCACCTT+TGG | + | chr1_4:7359587-7359606 | None:intergenic | 45.0% |
| GAATCGGTTGAAAGTCCATG+AGG | + | chr1_4:7359617-7359636 | None:intergenic | 45.0% | |
| CCGATTCAGATGTCGTTAAG+AGG | - | chr1_4:7359630-7359649 | Msa0147380:intron | 45.0% | |
| !!! | AATTTTGACTCCTCCCGAAG+TGG | - | chr1_4:7360188-7360207 | Msa0147380:intron | 45.0% |
| !! | CCGAGGTATTGGTATGACAA+AGG | - | chr1_4:7360767-7360786 | Msa0147380:CDS | 45.0% |
| ! | AATGTTTGCCGCTTGTGATC+TGG | - | chr1_4:7360868-7360887 | Msa0147380:CDS | 45.0% |
| ! | TGGTATGTCGCGGATGTTTT+CGG | - | chr1_4:7361089-7361108 | Msa0147380:CDS | 45.0% |
| ! | AGTAGGGGGTAGTGTTTCTA+TGG | - | chr1_4:7361637-7361656 | Msa0147380:CDS | 45.0% |
| AAACATAGTTAGGCGAGTGC+TGG | + | chr1_4:7361734-7361753 | None:intergenic | 45.0% | |
| CTATATCTGGGGAAGCAAAG+AGG | - | chr1_4:7361935-7361954 | Msa0147380:intron | 45.0% | |
| !! | AAGCAAAGAGGTTGATGTGG+AGG | - | chr1_4:7361947-7361966 | Msa0147380:intron | 45.0% |
| CATCTTCACTTTCCTCCTTG+GGG | + | chr1_4:7362152-7362171 | None:intergenic | 45.0% | |
| TGAAGGAAACGACTTACGAG+TGG | - | chr1_4:7362223-7362242 | Msa0147380:intron | 45.0% | |
| GAAGGAAACGACTTACGAGT+GGG | - | chr1_4:7362224-7362243 | Msa0147380:intron | 45.0% | |
| ATGTGAAGGCTATATGGCTG+AGG | - | chr1_4:7362259-7362278 | Msa0147380:intron | 45.0% | |
| GAATCCAAAGGAGGTTACAG+AGG | - | chr1_4:7362281-7362300 | Msa0147380:intron | 45.0% | |
| TCTTCCTCTGTAACCTCCTT+TGG | + | chr1_4:7362288-7362307 | None:intergenic | 45.0% | |
| ATTCTACCACTCTCTTGCCA+AGG | - | chr1_4:7362317-7362336 | Msa0147380:intron | 45.0% | |
| ! | GTTGGGGATTTGTGTTTTGC+AGG | - | chr1_4:7362424-7362443 | Msa0147380:CDS | 45.0% |
| CATCACCTTCAGCAGTAAAG+TGG | + | chr1_4:7362481-7362500 | None:intergenic | 45.0% | |
| ! | GTGCTTTAGGTGGCACATAA+AGG | + | chr1_4:7362520-7362539 | None:intergenic | 45.0% |
| ! | TACAAGTCCTGAGGTGCTTT+AGG | + | chr1_4:7362533-7362552 | None:intergenic | 45.0% |
| TAACTCTCGTACAAGTCCTG+AGG | + | chr1_4:7362542-7362561 | None:intergenic | 45.0% | |
| CCGCTCGCTTACATTTGAAA+AGG | + | chr1_4:7362988-7363007 | None:intergenic | 45.0% | |
| GAGGTCAATACACCAAGTTC+TGG | - | chr1_4:7363094-7363113 | Msa0147380:intron | 45.0% | |
| TGGAACCAGCAAAGAACAAC+TGG | - | chr1_4:7363383-7363402 | Msa0147380:intron | 45.0% | |
| TTCTTCAGACGCTCAAGGAA+TGG | + | chr1_4:7363417-7363436 | None:intergenic | 45.0% | |
| GTTCCAAAATGTGTCCAAGG+AGG | - | chr1_4:7363604-7363623 | Msa0147380:intron | 45.0% | |
| ! | CGGGAAGGATTCTAAAGACA+AGG | - | chr1_4:7363637-7363656 | Msa0147380:intron | 45.0% |
| !! | AGGAGTGTTATCCAATCGGT+TGG | + | chr1_4:7363744-7363763 | None:intergenic | 45.0% |
| TCCTAGACACCCTATCATCA+AGG | - | chr1_4:7363886-7363905 | Msa0147380:intron | 45.0% | |
| ! | TCCTTGATGATAGGGTGTCT+AGG | + | chr1_4:7363890-7363909 | None:intergenic | 45.0% |
| ACCCTATCATCAAGGAACTC+CGG | - | chr1_4:7363894-7363913 | Msa0147380:intron | 45.0% | |
| GGTTCTTAACTACTCTCTCC+CGG | + | chr1_4:7363916-7363935 | None:intergenic | 45.0% | |
| GAGAGTAGTTAAGAACCCTG+AGG | - | chr1_4:7363919-7363938 | Msa0147380:intron | 45.0% | |
| ! | GGATGAGAGTGTGAAGCAAA+CGG | - | chr1_4:7364034-7364053 | Msa0147380:CDS | 45.0% |
| ! | CACTTTCGAAAAGTGCAGTC+TGG | + | chr1_4:7364073-7364092 | None:intergenic | 45.0% |
| ! | CAGACTGCACTTTTCGAAAG+TGG | - | chr1_4:7364071-7364090 | Msa0147380:CDS | 45.0% |
| GGAAGATGAGACTGAAGTTG+AGG | - | chr1_4:7364187-7364206 | Msa0147380:intron | 45.0% | |
| GCTGATGAGGTAAATGACGA+TGG | - | chr1_4:7364251-7364270 | Msa0147380:CDS | 45.0% | |
| AAGTTAAAGGACCCATCCGT+TGG | - | chr1_4:7364385-7364404 | Msa0147380:intron | 45.0% | |
| TTGGCTCAGTTGGCAAGGAA+TGG | - | chr1_4:7358809-7358828 | Msa0147380:three_prime_UTR | 50.0% | |
| TGGCTCAGTTGGCAAGGAAT+GGG | - | chr1_4:7358810-7358829 | Msa0147380:three_prime_UTR | 50.0% | |
| CAGTTGGCAAGGAATGGGAA+CGG | - | chr1_4:7358815-7358834 | Msa0147380:three_prime_UTR | 50.0% | |
| AGTTGGCAAGGAATGGGAAC+GGG | - | chr1_4:7358816-7358835 | Msa0147380:three_prime_UTR | 50.0% | |
| CACAACCTTCTGCAAGGAAG+TGG | + | chr1_4:7358842-7358861 | None:intergenic | 50.0% | |
| CGAACACACAACCTTCTGCA+AGG | + | chr1_4:7358848-7358867 | None:intergenic | 50.0% | |
| GATTTCCTCTGCCGATGTGA+GGG | - | chr1_4:7358867-7358886 | Msa0147380:three_prime_UTR | 50.0% | |
| !! | ACAAACGGCAATGGTGGACT+TGG | - | chr1_4:7359022-7359041 | Msa0147380:three_prime_UTR | 50.0% |
| ! | AGGATGGGTTTAGTGCAACG+TGG | + | chr1_4:7359148-7359167 | None:intergenic | 50.0% |
| GATGATCTGACGGTGAAGGA+TGG | + | chr1_4:7359164-7359183 | None:intergenic | 50.0% | |
| CATGGATGATCTGACGGTGA+AGG | + | chr1_4:7359168-7359187 | None:intergenic | 50.0% | |
| TGCCAGCATGGATGATCTGA+CGG | + | chr1_4:7359174-7359193 | None:intergenic | 50.0% | |
| TCCTTGCTGGGACGAAGAAT+GGG | + | chr1_4:7359209-7359228 | None:intergenic | 50.0% | |
| TTCCTTGCTGGGACGAAGAA+TGG | + | chr1_4:7359210-7359229 | None:intergenic | 50.0% | |
| !! | AAACTCGGTGCTGTTCCTCA+TGG | - | chr1_4:7359599-7359618 | Msa0147380:intron | 50.0% |
| GAGATCGCTTCGCAGTAATG+CGG | - | chr1_4:7359767-7359786 | Msa0147380:CDS | 50.0% | |
| ! | ATGTTTGGTTCCACTTCGGG+AGG | + | chr1_4:7360201-7360220 | None:intergenic | 50.0% |
| CAACGCCAAGCTTGAAATCC+AGG | - | chr1_4:7360359-7360378 | Msa0147380:intron | 50.0% | |
| CCTTCACACCAGATCACAAG+CGG | + | chr1_4:7360879-7360898 | None:intergenic | 50.0% | |
| TGGAATGAACCACTAGGACG+TGG | - | chr1_4:7361210-7361229 | Msa0147380:intron | 50.0% | |
| ATCTCTGTTCCACGTCCTAG+TGG | + | chr1_4:7361222-7361241 | None:intergenic | 50.0% | |
| ATACTCTTCCACGTACTCGC+TGG | + | chr1_4:7361268-7361287 | None:intergenic | 50.0% | |
| !! | GGGAAGCAAAGAGGTTGATG+TGG | - | chr1_4:7361944-7361963 | Msa0147380:intron | 50.0% |
| AGACTCGTCGTCTTCATCAG+CGG | + | chr1_4:7361976-7361995 | None:intergenic | 50.0% | |
| TGAAGACGACGAGTCTTCTG+AGG | - | chr1_4:7361980-7361999 | Msa0147380:intron | 50.0% | |
| TCAATCAGCTGAAAGCCCCA+AGG | - | chr1_4:7362134-7362153 | Msa0147380:intron | 50.0% | |
| ATGGCTGAGGAATCCAAAGG+AGG | - | chr1_4:7362272-7362291 | Msa0147380:intron | 50.0% | |
| ! | TGGAGCCACTTTACTGCTGA+AGG | - | chr1_4:7362473-7362492 | Msa0147380:intron | 50.0% |
| ! | AAGTCCTGAGGTGCTTTAGG+TGG | + | chr1_4:7362530-7362549 | None:intergenic | 50.0% |
| ! | CTTTGTCAGTGGACTCGTCA+GGG | + | chr1_4:7362893-7362912 | None:intergenic | 50.0% |
| ! | TCTTTGTCAGTGGACTCGTC+AGG | + | chr1_4:7362894-7362913 | None:intergenic | 50.0% |
| ! | GACCCTCCTTGGACACATTT+TGG | + | chr1_4:7363610-7363629 | None:intergenic | 50.0% |
| ! | TCCAAGGAGGGTCTGAAACT+CGG | - | chr1_4:7363617-7363636 | Msa0147380:intron | 50.0% |
| ! | CCCGGAGTTCCTTGATGATA+GGG | + | chr1_4:7363898-7363917 | None:intergenic | 50.0% |
| CCCTATCATCAAGGAACTCC+GGG | - | chr1_4:7363895-7363914 | Msa0147380:intron | 50.0% | |
| ! | TCCCGGAGTTCCTTGATGAT+AGG | + | chr1_4:7363899-7363918 | None:intergenic | 50.0% |
| TCCTGACGCAACAGTTGAAG+AGG | - | chr1_4:7364166-7364185 | Msa0147380:intron | 50.0% | |
| TCCTCTTCAACTGTTGCGTC+AGG | + | chr1_4:7364170-7364189 | None:intergenic | 50.0% | |
| GTCGTCCTACCAACACACGT+TGG | - | chr1_4:7358790-7358809 | Msa0147380:three_prime_UTR | 55.0% | |
| ! | CTGAGCCAACGTGTGTTGGT+AGG | + | chr1_4:7358798-7358817 | None:intergenic | 55.0% |
| CCAACTGAGCCAACGTGTGT+TGG | + | chr1_4:7358802-7358821 | None:intergenic | 55.0% | |
| !! | CCAACACACGTTGGCTCAGT+TGG | - | chr1_4:7358799-7358818 | Msa0147380:three_prime_UTR | 55.0% |
| !! | ACACGTTGGCTCAGTTGGCA+AGG | - | chr1_4:7358804-7358823 | Msa0147380:three_prime_UTR | 55.0% |
| CGATTTCCTCTGCCGATGTG+AGG | - | chr1_4:7358866-7358885 | Msa0147380:three_prime_UTR | 55.0% | |
| CACCAACACTGCCCTCACAT+CGG | + | chr1_4:7358881-7358900 | None:intergenic | 55.0% | |
| !! | GATGTGAGGGCAGTGTTGGT+GGG | - | chr1_4:7358880-7358899 | Msa0147380:three_prime_UTR | 55.0% |
| !! | GGCCCAAAGGGCACTTATAG+AGG | + | chr1_4:7358919-7358938 | None:intergenic | 55.0% |
| CTATAAGTGCCCTTTGGGCC+CGG | - | chr1_4:7358919-7358938 | Msa0147380:three_prime_UTR | 55.0% | |
| CACCGTCAGATCATCCATGC+TGG | - | chr1_4:7359169-7359188 | Msa0147380:three_prime_UTR | 55.0% | |
| AGCGGTTGGATTTGCCAGCA+TGG | + | chr1_4:7359186-7359205 | None:intergenic | 55.0% | |
| TCCCATTCTTCGTCCCAGCA+AGG | - | chr1_4:7359205-7359224 | Msa0147380:three_prime_UTR | 55.0% | |
| CCGCTTGTGATCTGGTGTGA+AGG | - | chr1_4:7360876-7360895 | Msa0147380:intron | 55.0% | |
| ! | ACTCGCTGGCCTCTTCTTTG+AGG | + | chr1_4:7361254-7361273 | None:intergenic | 55.0% |
| GACTCGTCGTCTTCATCAGC+GGG | + | chr1_4:7361975-7361994 | None:intergenic | 55.0% | |
| ! | CGACGAGTCTTCTGAGGAAG+AGG | - | chr1_4:7361986-7362005 | Msa0147380:intron | 55.0% |
| ATCAGCTGAAAGCCCCAAGG+AGG | - | chr1_4:7362137-7362156 | Msa0147380:intron | 55.0% | |
| ! | TGTGCCACCTAAAGCACCTC+AGG | - | chr1_4:7362523-7362542 | Msa0147380:intron | 55.0% |
| GATCCGTAAGCTTGCCGAAG+AGG | - | chr1_4:7362866-7362885 | Msa0147380:CDS | 55.0% | |
| GGTCCTCTTCGGCAAGCTTA+CGG | + | chr1_4:7362872-7362891 | None:intergenic | 55.0% | |
| ! | CCAAGGAGGGTCTGAAACTC+GGG | - | chr1_4:7363618-7363637 | Msa0147380:intron | 55.0% |
| AAGCATACATGCGCGGCAAG+AGG | - | chr1_4:7363849-7363868 | Msa0147380:CDS | 55.0% | |
| AGCATACATGCGCGGCAAGA+GGG | - | chr1_4:7363850-7363869 | Msa0147380:CDS | 55.0% | |
| ACGGGCCACTTCCTTGCAGA+AGG | - | chr1_4:7358834-7358853 | Msa0147380:three_prime_UTR | 60.0% | |
| TGCCGATGTGAGGGCAGTGT+TGG | - | chr1_4:7358876-7358895 | Msa0147380:three_prime_UTR | 60.0% | |
| ! | CGATGTGAGGGCAGTGTTGG+TGG | - | chr1_4:7358879-7358898 | Msa0147380:three_prime_UTR | 60.0% |
| TCCAGTCACCACCAGGGTCA+GGG | + | chr1_4:7358952-7358971 | None:intergenic | 60.0% | |
| TTCGGCTCCAGTCACCACCA+GGG | + | chr1_4:7358958-7358977 | None:intergenic | 60.0% | |
| GGACGAAGAATGGGAGCGGT+TGG | + | chr1_4:7359200-7359219 | None:intergenic | 60.0% | |
| GCTGGGACGAAGAATGGGAG+CGG | + | chr1_4:7359204-7359223 | None:intergenic | 60.0% | |
| AGAAGAGGCCAGCGAGTACG+TGG | - | chr1_4:7361257-7361276 | Msa0147380:intron | 60.0% | |
| CTCTCTGGCGTGCGTGCATA+AGG | - | chr1_4:7361547-7361566 | Msa0147380:intron | 60.0% | |
| GGACTCGTCAGGGTCCTCTT+CGG | + | chr1_4:7362883-7362902 | None:intergenic | 60.0% | |
| CCCGAGTTTCAGACCCTCCT+TGG | + | chr1_4:7363621-7363640 | None:intergenic | 60.0% | |
| ! | GGAGGGTCTGAAACTCGGGA+AGG | - | chr1_4:7363622-7363641 | Msa0147380:intron | 60.0% |
| CACTGCCCTCACATCGGCAG+AGG | + | chr1_4:7358875-7358894 | None:intergenic | 65.0% | |
| TAAGTGCCCTTTGGGCCCGG+AGG | - | chr1_4:7358922-7358941 | Msa0147380:three_prime_UTR | 65.0% | |
| CTCCAGTCACCACCAGGGTC+AGG | + | chr1_4:7358953-7358972 | None:intergenic | 65.0% | |
| GTTCGGCTCCAGTCACCACC+AGG | + | chr1_4:7358959-7358978 | None:intergenic | 65.0% | |
| ! | GCCCTGACCCTGGTGGTGAC+TGG | - | chr1_4:7358948-7358967 | Msa0147380:three_prime_UTR | 70.0% |
| GGCACGCCTCCGGGCCCAAA+GGG | + | chr1_4:7358931-7358950 | None:intergenic | 75.0% | |
| CAGGGTCAGGGCACGCCTCC+GGG | + | chr1_4:7358940-7358959 | None:intergenic | 75.0% | |
| CCAGGGTCAGGGCACGCCTC+CGG | + | chr1_4:7358941-7358960 | None:intergenic | 75.0% | |
| GAGGCGTGCCCTGACCCTGG+TGG | - | chr1_4:7358941-7358960 | Msa0147380:three_prime_UTR | 75.0% | |
| ! | GGGCACGCCTCCGGGCCCAA+AGG | + | chr1_4:7358932-7358951 | None:intergenic | 80.0% |
| !! | CCGGAGGCGTGCCCTGACCC+TGG | - | chr1_4:7358938-7358957 | Msa0147380:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 7358768 | 7364876 | 7358768 | ID=Msa0147380;Name=Msa0147380 |
| chr1_4 | mRNA | 7358768 | 7364876 | 7358768 | ID=Msa0147380-mRNA-1;Parent=Msa0147380;Name=Msa0147380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.93|0.87|0.93|1|1|16|581|871 |
| chr1_4 | exon | 7358768 | 7359609 | 7358768 | ID=Msa0147380-mRNA-1:exon:3206;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7359704 | 7360108 | 7359704 | ID=Msa0147380-mRNA-1:exon:3205;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7360195 | 7360345 | 7360195 | ID=Msa0147380-mRNA-1:exon:3204;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7360442 | 7360580 | 7360442 | ID=Msa0147380-mRNA-1:exon:3203;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7360723 | 7360888 | 7360723 | ID=Msa0147380-mRNA-1:exon:3202;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7360983 | 7361198 | 7360983 | ID=Msa0147380-mRNA-1:exon:3201;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7361306 | 7361502 | 7361306 | ID=Msa0147380-mRNA-1:exon:3200;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7361630 | 7361750 | 7361630 | ID=Msa0147380-mRNA-1:exon:3199;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7362348 | 7362486 | 7362348 | ID=Msa0147380-mRNA-1:exon:3198;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7362590 | 7362716 | 7362590 | ID=Msa0147380-mRNA-1:exon:3197;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7362807 | 7362918 | 7362807 | ID=Msa0147380-mRNA-1:exon:3196;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7363264 | 7363344 | 7363264 | ID=Msa0147380-mRNA-1:exon:3195;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7363745 | 7363898 | 7363745 | ID=Msa0147380-mRNA-1:exon:3194;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7363993 | 7364113 | 7363993 | ID=Msa0147380-mRNA-1:exon:3193;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7364234 | 7364333 | 7364234 | ID=Msa0147380-mRNA-1:exon:3192;Parent=Msa0147380-mRNA-1 |
| chr1_4 | exon | 7364751 | 7364876 | 7364751 | ID=Msa0147380-mRNA-1:exon:3191;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7364751 | 7364876 | 7364751 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7364234 | 7364333 | 7364234 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7363993 | 7364113 | 7363993 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7363745 | 7363898 | 7363745 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7363264 | 7363344 | 7363264 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7362807 | 7362918 | 7362807 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7362590 | 7362716 | 7362590 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7362348 | 7362486 | 7362348 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7361630 | 7361750 | 7361630 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7361306 | 7361502 | 7361306 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7360983 | 7361198 | 7360983 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7360723 | 7360888 | 7360723 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7360442 | 7360580 | 7360442 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7360195 | 7360345 | 7360195 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7359704 | 7360108 | 7359704 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | CDS | 7359349 | 7359609 | 7359349 | ID=Msa0147380-mRNA-1:cds;Parent=Msa0147380-mRNA-1 |
| chr1_4 | three_prime_UTR | 7358768 | 7359348 | 7358768 | ID=Msa0147380-mRNA-1:three_prime_utr;Parent=Msa0147380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
