Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127190 | AFK35292.1 | 96.721 | 122 | 4 | 0 | 1 | 122 | 6 | 127 | 6.17e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127190 | sp|B9FHF3|DJB6_ORYSJ | 76.860 | 121 | 28 | 0 | 1 | 121 | 226 | 346 | 2.64e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127190 | I3S4V0 | 96.721 | 122 | 4 | 0 | 1 | 122 | 6 | 127 | 2.95e-79 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa1127190 | 0.874386 | 7.036066e-68 | -8.615850e-47 |
| Msa0006880 | Msa1127190 | 0.806466 | 8.115523e-50 | -8.615850e-47 |
| Msa0033880 | Msa1127190 | 0.804755 | 1.854844e-49 | -8.615850e-47 |
| Msa0055150 | Msa1127190 | 0.812961 | 3.258068e-51 | -8.615850e-47 |
| Msa0057890 | Msa1127190 | 0.844437 | 7.565064e-59 | -8.615850e-47 |
| Msa0074320 | Msa1127190 | 0.800896 | 1.162216e-48 | -8.615850e-47 |
| Msa0082680 | Msa1127190 | -0.825437 | 4.690682e-54 | -8.615850e-47 |
| Msa0100800 | Msa1127190 | 0.824200 | 9.180810e-54 | -8.615850e-47 |
| Msa0102600 | Msa1127190 | 0.857616 | 1.445850e-62 | -8.615850e-47 |
| Msa0603670 | Msa1127190 | 0.803746 | 3.009201e-49 | -8.615850e-47 |
| Msa0620620 | Msa1127190 | 0.837011 | 6.683844e-57 | -8.615850e-47 |
| Msa0629650 | Msa1127190 | 0.813405 | 2.602471e-51 | -8.615850e-47 |
| Msa0661710 | Msa1127190 | 0.815469 | 9.096990e-52 | -8.615850e-47 |
| Msa0696450 | Msa1127190 | 0.818116 | 2.317900e-52 | -8.615850e-47 |
| Msa0745200 | Msa1127190 | 0.824069 | 9.855389e-54 | -8.615850e-47 |
| Msa0790440 | Msa1127190 | -0.820772 | 5.749342e-53 | -8.615850e-47 |
| Msa0819540 | Msa1127190 | 0.818137 | 2.293222e-52 | -8.615850e-47 |
| Msa0826760 | Msa1127190 | 0.830050 | 3.652484e-55 | -8.615850e-47 |
| Msa0827280 | Msa1127190 | 0.827355 | 1.637887e-54 | -8.615850e-47 |
| Msa0127850 | Msa1127190 | 0.803617 | 3.200967e-49 | -8.615850e-47 |
| Msa0131450 | Msa1127190 | 0.812279 | 4.591933e-51 | -8.615850e-47 |
| Msa0147380 | Msa1127190 | 0.852084 | 5.820065e-61 | -8.615850e-47 |
| Msa0166750 | Msa1127190 | 0.802074 | 6.667013e-49 | -8.615850e-47 |
| Msa0174000 | Msa1127190 | 0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa0185350 | Msa1127190 | 0.829530 | 4.889325e-55 | -8.615850e-47 |
| Msa0186310 | Msa1127190 | 0.821521 | 3.863032e-53 | -8.615850e-47 |
| Msa0188730 | Msa1127190 | -0.802554 | 5.310396e-49 | -8.615850e-47 |
| Msa0194540 | Msa1127190 | 0.801120 | 1.045838e-48 | -8.615850e-47 |
| Msa0197520 | Msa1127190 | 0.803012 | 4.269966e-49 | -8.615850e-47 |
| Msa0197660 | Msa1127190 | 0.830583 | 2.706113e-55 | -8.615850e-47 |
| Msa0208300 | Msa1127190 | 0.809284 | 2.041951e-50 | -8.615850e-47 |
| Msa0208310 | Msa1127190 | 0.845205 | 4.694597e-59 | -8.615850e-47 |
| Msa0215590 | Msa1127190 | 0.806904 | 6.558613e-50 | -8.615850e-47 |
| Msa0229360 | Msa1127190 | 0.807812 | 4.210073e-50 | -8.615850e-47 |
| Msa0372420 | Msa1127190 | 0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa0382400 | Msa1127190 | 0.857965 | 1.139315e-62 | -8.615850e-47 |
| Msa0384880 | Msa1127190 | 0.802430 | 5.630761e-49 | -8.615850e-47 |
| Msa0386040 | Msa1127190 | 0.842970 | 1.867922e-58 | -8.615850e-47 |
| Msa0391400 | Msa1127190 | 0.812236 | 4.693689e-51 | -8.615850e-47 |
| Msa0408300 | Msa1127190 | 0.836321 | 1.002371e-56 | -8.615850e-47 |
| Msa0460930 | Msa1127190 | 0.807713 | 4.417784e-50 | -8.615850e-47 |
| Msa0474590 | Msa1127190 | 0.800245 | 1.577621e-48 | -8.615850e-47 |
| Msa0980020 | Msa1127190 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
| Msa0994390 | Msa1127190 | 0.806100 | 9.689941e-50 | -8.615850e-47 |
| Msa1001080 | Msa1127190 | 0.818095 | 2.343396e-52 | -8.615850e-47 |
| Msa1041140 | Msa1127190 | 0.913500 | 5.723075e-84 | -8.615850e-47 |
| Msa1041520 | Msa1127190 | 0.809934 | 1.480648e-50 | -8.615850e-47 |
| Msa1079190 | Msa1127190 | 0.812418 | 4.282939e-51 | -8.615850e-47 |
| Msa1082290 | Msa1127190 | 0.820548 | 6.473263e-53 | -8.615850e-47 |
| Msa1082300 | Msa1127190 | 0.836864 | 7.288738e-57 | -8.615850e-47 |
| Msa1083750 | Msa1127190 | 0.833099 | 6.476761e-56 | -8.615850e-47 |
| Msa1089320 | Msa1127190 | 0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa1103660 | Msa1127190 | -0.803188 | 3.926506e-49 | -8.615850e-47 |
| Msa0239800 | Msa1127190 | 0.843466 | 1.377460e-58 | -8.615850e-47 |
| Msa0257520 | Msa1127190 | 0.810241 | 1.271250e-50 | -8.615850e-47 |
| Msa0270170 | Msa1127190 | -0.847805 | 9.167187e-60 | -8.615850e-47 |
| Msa0317510 | Msa1127190 | 0.832750 | 7.911464e-56 | -8.615850e-47 |
| Msa0333650 | Msa1127190 | 0.808672 | 2.760356e-50 | -8.615850e-47 |
| Msa1115240 | Msa1127190 | 0.801692 | 7.985726e-49 | -8.615850e-47 |
| Msa1124070 | Msa1127190 | 0.860130 | 2.560007e-63 | -8.615850e-47 |
| Msa1127190 | Msa1127830 | 0.826201 | 3.088785e-54 | -8.615850e-47 |
| Msa1127190 | Msa1128660 | 0.833104 | 6.458090e-56 | -8.615850e-47 |
| Msa1127190 | Msa1131170 | 0.843796 | 1.124133e-58 | -8.615850e-47 |
| Msa1127190 | Msa1169080 | 0.827718 | 1.340416e-54 | -8.615850e-47 |
| Msa1127190 | Msa1173500 | 0.805316 | 1.416057e-49 | -8.615850e-47 |
| Msa1127190 | Msa1218580 | 0.802227 | 6.199747e-49 | -8.615850e-47 |
| Msa1127190 | Msa1235380 | 0.802835 | 4.646415e-49 | -8.615850e-47 |
| Msa1127190 | Msa1282240 | 0.811860 | 5.667985e-51 | -8.615850e-47 |
| Msa1127190 | Msa1358670 | 0.801895 | 7.254955e-49 | -8.615850e-47 |
| Msa1127190 | Msa1362020 | 0.931309 | 4.567572e-94 | -8.615850e-47 |
| Msa1127190 | Msa1363330 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa1127190 | Msa1364210 | 0.806215 | 9.166257e-50 | -8.615850e-47 |
| Msa1127190 | Msa1386600 | 0.810166 | 1.319507e-50 | -8.615850e-47 |
| Msa1127190 | Msa1391550 | 0.805373 | 1.377331e-49 | -8.615850e-47 |
| Msa1127190 | Msa1403530 | -0.832603 | 8.602918e-56 | -8.615850e-47 |
| Msa1127190 | Msa1418280 | 0.805675 | 1.190700e-49 | -8.615850e-47 |
| Msa1127190 | Msa1421460 | 0.803156 | 3.988248e-49 | -8.615850e-47 |
| Msa1127190 | Msa1436600 | 0.807531 | 4.830861e-50 | -8.615850e-47 |
| Msa1127190 | Msa1450550 | -0.840973 | 6.295061e-58 | -8.615850e-47 |
| Msa0519130 | Msa1127190 | 0.801553 | 8.529714e-49 | -8.615850e-47 |
| Msa0526540 | Msa1127190 | 0.810447 | 1.147682e-50 | -8.615850e-47 |
| Msa0532980 | Msa1127190 | 0.805426 | 1.342313e-49 | -8.615850e-47 |
| Msa0541040 | Msa1127190 | 0.826346 | 2.853062e-54 | -8.615850e-47 |
| Msa0576940 | Msa1127190 | 0.806366 | 8.518220e-50 | -8.615850e-47 |
| Msa0596800 | Msa1127190 | 0.809408 | 1.920767e-50 | -8.615850e-47 |
| Msa0597000 | Msa1127190 | 0.846760 | 1.773589e-59 | -8.615850e-47 |
| Msa0865330 | Msa1127190 | 0.808396 | 3.160989e-50 | -8.615850e-47 |
| Msa0865570 | Msa1127190 | 0.821894 | 3.167503e-53 | -8.615850e-47 |
| Msa0932100 | Msa1127190 | 0.813171 | 2.929101e-51 | -8.615850e-47 |
| Msa0932190 | Msa1127190 | 0.805070 | 1.593868e-49 | -8.615850e-47 |
| Msa0970230 | Msa1127190 | 0.813563 | 2.403188e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127190 | MtrunA17_Chr7g0269841 | 97.541 | 122 | 3 | 0 | 1 | 122 | 223 | 344 | 1.13e-82 | 245 |
| Msa1127190 | MtrunA17_Chr1g0194941 | 71.875 | 64 | 18 | 0 | 1 | 64 | 39 | 102 | 5.16e-29 | 101 |
| Msa1127190 | MtrunA17_Chr4g0006391 | 44.340 | 106 | 58 | 1 | 17 | 121 | 233 | 338 | 4.46e-20 | 83.6 |
| Msa1127190 | MtrunA17_Chr3g0138471 | 37.398 | 123 | 76 | 1 | 1 | 122 | 204 | 326 | 9.41e-19 | 79.7 |
| Msa1127190 | MtrunA17_Chr4g0040501 | 36.585 | 123 | 77 | 1 | 1 | 122 | 222 | 344 | 1.05e-17 | 77.0 |
| Msa1127190 | MtrunA17_Chr5g0415751 | 35.849 | 106 | 67 | 1 | 18 | 122 | 56 | 161 | 3.04e-16 | 70.5 |
| Msa1127190 | MtrunA17_Chr2g0282741 | 34.146 | 123 | 80 | 1 | 1 | 122 | 217 | 339 | 4.43e-16 | 72.4 |
| Msa1127190 | MtrunA17_Chr2g0324921 | 34.959 | 123 | 79 | 1 | 1 | 122 | 213 | 335 | 1.02e-15 | 71.6 |
| Msa1127190 | MtrunA17_Chr2g0322181 | 33.333 | 123 | 79 | 2 | 2 | 121 | 236 | 358 | 1.83e-14 | 68.2 |
| Msa1127190 | MtrunA17_Chr8g0334811 | 34.921 | 126 | 77 | 3 | 1 | 121 | 237 | 362 | 5.88e-14 | 66.6 |
| Msa1127190 | MtrunA17_Chr3g0124801 | 37.383 | 107 | 66 | 1 | 16 | 121 | 185 | 291 | 1.19e-13 | 65.5 |
| Msa1127190 | MtrunA17_Chr4g0025401 | 30.894 | 123 | 82 | 2 | 2 | 121 | 234 | 356 | 5.99e-13 | 63.9 |
| Msa1127190 | MtrunA17_Chr3g0093111 | 30.894 | 123 | 84 | 1 | 1 | 122 | 189 | 311 | 6.86e-12 | 60.8 |
| Msa1127190 | MtrunA17_Chr2g0277721 | 33.645 | 107 | 69 | 2 | 17 | 121 | 153 | 259 | 1.48e-11 | 59.3 |
| Msa1127190 | MtrunA17_Chr5g0426951 | 32.353 | 102 | 67 | 2 | 14 | 114 | 316 | 416 | 2.46e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127190 | AT3G62600.1 | 73.770 | 122 | 32 | 0 | 1 | 122 | 225 | 346 | 2.76e-63 | 196 |
| Msa1127190 | AT1G10350.1 | 42.453 | 106 | 61 | 0 | 17 | 122 | 242 | 347 | 7.45e-20 | 83.2 |
| Msa1127190 | AT2G20560.1 | 42.056 | 107 | 61 | 1 | 17 | 122 | 231 | 337 | 3.47e-19 | 81.3 |
| Msa1127190 | AT2G20550.1 | 40.187 | 107 | 63 | 1 | 17 | 122 | 178 | 284 | 6.76e-19 | 80.1 |
| Msa1127190 | AT2G20550.2 | 40.187 | 107 | 63 | 1 | 17 | 122 | 178 | 284 | 6.76e-19 | 80.1 |
| Msa1127190 | AT3G08910.1 | 41.905 | 105 | 60 | 1 | 18 | 121 | 216 | 320 | 8.16e-19 | 80.1 |
| Msa1127190 | AT1G59725.1 | 39.252 | 107 | 64 | 1 | 17 | 122 | 223 | 329 | 3.49e-18 | 78.6 |
| Msa1127190 | AT1G44160.1 | 38.525 | 122 | 74 | 1 | 1 | 121 | 232 | 353 | 9.67e-18 | 77.4 |
| Msa1127190 | AT5G01390.2 | 39.048 | 105 | 63 | 1 | 18 | 121 | 171 | 275 | 1.55e-17 | 76.3 |
| Msa1127190 | AT5G01390.1 | 39.048 | 105 | 63 | 1 | 18 | 121 | 229 | 333 | 1.95e-17 | 76.6 |
| Msa1127190 | AT4G28480.2 | 38.318 | 107 | 65 | 1 | 17 | 122 | 184 | 290 | 2.65e-17 | 75.9 |
| Msa1127190 | AT4G28480.1 | 38.318 | 107 | 65 | 1 | 17 | 122 | 242 | 348 | 4.22e-17 | 75.9 |
| Msa1127190 | AT5G25530.2 | 34.959 | 123 | 79 | 1 | 1 | 122 | 216 | 338 | 6.40e-17 | 75.1 |
| Msa1127190 | AT5G25530.1 | 34.959 | 123 | 79 | 1 | 1 | 122 | 224 | 346 | 6.72e-17 | 75.1 |
| Msa1127190 | AT5G22060.1 | 36.290 | 124 | 76 | 2 | 1 | 121 | 236 | 359 | 1.61e-16 | 74.3 |
| Msa1127190 | AT3G44110.1 | 33.065 | 124 | 80 | 2 | 1 | 121 | 235 | 358 | 2.24e-14 | 68.6 |
| Msa1127190 | AT3G47940.1 | 34.579 | 107 | 69 | 1 | 17 | 122 | 241 | 347 | 2.89e-12 | 62.4 |
| Msa1127190 | AT1G11040.1 | 37.143 | 105 | 65 | 1 | 18 | 121 | 328 | 432 | 4.25e-12 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGAATCTGGAGATTTA+AGG | 0.175844 | 7_3:-78702862 | Msa1127190:CDS |
| TCCAGATTCTCCATCAATTA+TGG | 0.185165 | 7_3:+78702871 | None:intergenic |
| TTGAACTTCCTTACTTGCTT+TGG | 0.294218 | 7_3:+78702261 | None:intergenic |
| CCCATAATTGATGGAGAATC+TGG | 0.346187 | 7_3:-78702872 | Msa1127190:CDS |
| CTTTAGGTTCAAGCTCTTGT+TGG | 0.355874 | 7_3:-78702449 | Msa1127190:intron |
| CCAGATTCTCCATCAATTAT+GGG | 0.369755 | 7_3:+78702872 | None:intergenic |
| TGGAGAATCTGGAGATTTAA+GGG | 0.381629 | 7_3:-78702861 | Msa1127190:intron |
| ATCAAAATAGCACCACAATA+AGG | 0.397206 | 7_3:+78701927 | None:intergenic |
| CATTTCTTTCTTCAATTGCT+AGG | 0.406440 | 7_3:+78701788 | None:intergenic |
| TAAACACCTTGATGAACATT+TGG | 0.407639 | 7_3:-78702411 | Msa1127190:CDS |
| TTCTTGGTTAGAATACATTC+AGG | 0.416876 | 7_3:-78702125 | Msa1127190:exon |
| AGCAAGTAAGGAAGTTCAAA+GGG | 0.426789 | 7_3:-78702257 | Msa1127190:CDS |
| GTCCTCAATGTAACATGATT+AGG | 0.428431 | 7_3:-78702079 | Msa1127190:three_prime_UTR |
| ATGTTCATCAAGGTGTTTAA+CGG | 0.438073 | 7_3:+78702415 | None:intergenic |
| TCACAAATCCAAAGCAAGTA+AGG | 0.443028 | 7_3:-78702269 | Msa1127190:CDS |
| GACGGCGAGCCCATAATTGA+TGG | 0.455291 | 7_3:-78702881 | Msa1127190:CDS |
| TTCTTTGTGCTCATATGCAA+TGG | 0.465194 | 7_3:+78702225 | None:intergenic |
| GCATCTACTGTGATCCTTGT+CGG | 0.469809 | 7_3:-78701960 | Msa1127190:three_prime_UTR |
| ATTTCTTTCTTCAATTGCTA+GGG | 0.482619 | 7_3:+78701789 | None:intergenic |
| TTTAAAATGTAATTTACCAT+AGG | 0.484246 | 7_3:+78701736 | None:intergenic |
| AGTATAAATTGTCAATCCTA+TGG | 0.486240 | 7_3:-78701752 | Msa1127190:three_prime_UTR |
| AGCTTGCTTTGTGTCTGCAA+TGG | 0.486629 | 7_3:-78701859 | Msa1127190:three_prime_UTR |
| TTACAACAAATACACGCCTT+AGG | 0.499816 | 7_3:-78702046 | Msa1127190:three_prime_UTR |
| CTGTTCCTCCGATAGTGAGG+TGG | 0.511479 | 7_3:+78702167 | None:intergenic |
| TGTTCCTCCGATAGTGAGGT+GGG | 0.527665 | 7_3:+78702168 | None:intergenic |
| CATCTTGTGAGCAAGGTGAA+AGG | 0.531664 | 7_3:-78701832 | Msa1127190:three_prime_UTR |
| TCTGTTCCCCACCTCACTAT+CGG | 0.540991 | 7_3:-78702175 | Msa1127190:CDS |
| TTGCATATGAGCACAAAGAA+AGG | 0.546751 | 7_3:-78702222 | Msa1127190:CDS |
| AAGCAAGTAAGGAAGTTCAA+AGG | 0.564203 | 7_3:-78702258 | Msa1127190:CDS |
| TGTCTACCAAATGTTCATCA+AGG | 0.574433 | 7_3:+78702405 | None:intergenic |
| GTAAGGAAGTTCAAAGGGGA+GGG | 0.585483 | 7_3:-78702252 | Msa1127190:CDS |
| CACCTAATCATGTTACATTG+AGG | 0.596632 | 7_3:+78702077 | None:intergenic |
| AGTAAGGAAGTTCAAAGGGG+AGG | 0.612915 | 7_3:-78702253 | Msa1127190:CDS |
| GGCACATGAGTGCCTTATTG+TGG | 0.615842 | 7_3:-78701939 | Msa1127190:three_prime_UTR |
| AAGGCACTCATGTGCCGACA+AGG | 0.617284 | 7_3:+78701946 | None:intergenic |
| TTTCTGTTCCTCCGATAGTG+AGG | 0.622344 | 7_3:+78702164 | None:intergenic |
| CACGACTGTCACTATCACGC+TGG | 0.651681 | 7_3:-78702690 | Msa1127190:intron |
| GTTCCTCCGATAGTGAGGTG+GGG | 0.652557 | 7_3:+78702169 | None:intergenic |
| TTTGGTAGACATAAGCTCGA+AGG | 0.653250 | 7_3:-78702393 | Msa1127190:intron |
| CTCAATGTAACATGATTAGG+TGG | 0.663853 | 7_3:-78702076 | Msa1127190:three_prime_UTR |
| GTTCCCCACCTCACTATCGG+AGG | 0.706891 | 7_3:-78702172 | Msa1127190:CDS |
| GCAAGTAAGGAAGTTCAAAG+GGG | 0.733693 | 7_3:-78702256 | Msa1127190:CDS |
| AAAGTTCATGAGGTGCTGTG+CGG | 0.790333 | 7_3:+78702738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATAAAGTATCTAT+TGG | + | chr7_3:78702644-78702663 | None:intergenic | 10.0% |
| !!! | AATAAAAATAAAGTATCTAT+TGG | + | chr7_3:78702644-78702663 | None:intergenic | 10.0% |
| !! | ACAAAAATAAAATCAATTCT+TGG | - | chr7_3:78702495-78702514 | Msa1127190:intron | 15.0% |
| !! | ACAAAAATAAAATCAATTCT+TGG | - | chr7_3:78702495-78702514 | Msa1127190:intron | 15.0% |
| !! | TTGGTTAACTAACAAAAAAT+GGG | + | chr7_3:78702625-78702644 | None:intergenic | 20.0% |
| !! | ATTGGTTAACTAACAAAAAA+TGG | + | chr7_3:78702626-78702645 | None:intergenic | 20.0% |
| !! | TTGGTTAACTAACAAAAAAT+GGG | + | chr7_3:78702625-78702644 | None:intergenic | 20.0% |
| !! | ATTGGTTAACTAACAAAAAA+TGG | + | chr7_3:78702626-78702645 | None:intergenic | 20.0% |
| !! | CATTTGCTAACAAAAATGAA+AGG | + | chr7_3:78701811-78701830 | None:intergenic | 25.0% |
| ! | AAACTGTTCATATTAGCATA+TGG | + | chr7_3:78701873-78701892 | None:intergenic | 25.0% |
| ! | TTTAATACTTACTACAACAG+TGG | + | chr7_3:78702055-78702074 | None:intergenic | 25.0% |
| ! | TGGTTAACTAACAAAAAATG+GGG | + | chr7_3:78702624-78702643 | None:intergenic | 25.0% |
| !!! | CTAGGGATATTTTGTTTAAT+TGG | + | chr7_3:78702833-78702852 | None:intergenic | 25.0% |
| ! | ATTTCTTTCTTCAATTGCTA+GGG | + | chr7_3:78702850-78702869 | None:intergenic | 25.0% |
| ! | AGTATAAATTGTCAATCCTA+TGG | - | chr7_3:78702884-78702903 | Msa1127190:CDS | 25.0% |
| !! | CATTTGCTAACAAAAATGAA+AGG | + | chr7_3:78701811-78701830 | None:intergenic | 25.0% |
| ! | AAACTGTTCATATTAGCATA+TGG | + | chr7_3:78701873-78701892 | None:intergenic | 25.0% |
| ! | TTTAATACTTACTACAACAG+TGG | + | chr7_3:78702055-78702074 | None:intergenic | 25.0% |
| ! | TGGTTAACTAACAAAAAATG+GGG | + | chr7_3:78702624-78702643 | None:intergenic | 25.0% |
| !!! | CTAGGGATATTTTGTTTAAT+TGG | + | chr7_3:78702833-78702852 | None:intergenic | 25.0% |
| ! | ATTTCTTTCTTCAATTGCTA+GGG | + | chr7_3:78702850-78702869 | None:intergenic | 25.0% |
| ! | AGTATAAATTGTCAATCCTA+TGG | - | chr7_3:78702884-78702903 | Msa1127190:CDS | 25.0% |
| ! | ACCTCATGAACTTTTCAAAA+GGG | - | chr7_3:78701907-78701926 | Msa1127190:three_prime_UTR | 30.0% |
| TTTAGTTGTACCTTACCTTT+CGG | - | chr7_3:78701990-78702009 | Msa1127190:three_prime_UTR | 30.0% | |
| GTATTAAACAGTAACTAGCA+TGG | - | chr7_3:78702067-78702086 | Msa1127190:three_prime_UTR | 30.0% | |
| ! | ATGTTCATCAAGGTGTTTAA+CGG | + | chr7_3:78702224-78702243 | None:intergenic | 30.0% |
| TAAACACCTTGATGAACATT+TGG | - | chr7_3:78702225-78702244 | Msa1127190:CDS | 30.0% | |
| ! | AGGTGTGTTTCAATGTTTTT+GGG | + | chr7_3:78702320-78702339 | None:intergenic | 30.0% |
| ! | TAGGTGTGTTTCAATGTTTT+TGG | + | chr7_3:78702321-78702340 | None:intergenic | 30.0% |
| AGGGACAAAAGAAATATGTT+AGG | + | chr7_3:78702340-78702359 | None:intergenic | 30.0% | |
| TTCTTGGTTAGAATACATTC+AGG | - | chr7_3:78702511-78702530 | Msa1127190:intron | 30.0% | |
| GGTTAACTAACAAAAAATGG+GGG | + | chr7_3:78702623-78702642 | None:intergenic | 30.0% | |
| ATCAAAATAGCACCACAATA+AGG | + | chr7_3:78702712-78702731 | None:intergenic | 30.0% | |
| CATTTCTTTCTTCAATTGCT+AGG | + | chr7_3:78702851-78702870 | None:intergenic | 30.0% | |
| ! | ACCTCATGAACTTTTCAAAA+GGG | - | chr7_3:78701907-78701926 | Msa1127190:three_prime_UTR | 30.0% |
| TTTAGTTGTACCTTACCTTT+CGG | - | chr7_3:78701990-78702009 | Msa1127190:three_prime_UTR | 30.0% | |
| GTATTAAACAGTAACTAGCA+TGG | - | chr7_3:78702067-78702086 | Msa1127190:three_prime_UTR | 30.0% | |
| ! | ATGTTCATCAAGGTGTTTAA+CGG | + | chr7_3:78702224-78702243 | None:intergenic | 30.0% |
| TAAACACCTTGATGAACATT+TGG | - | chr7_3:78702225-78702244 | Msa1127190:CDS | 30.0% | |
| ! | AGGTGTGTTTCAATGTTTTT+GGG | + | chr7_3:78702320-78702339 | None:intergenic | 30.0% |
| ! | TAGGTGTGTTTCAATGTTTT+TGG | + | chr7_3:78702321-78702340 | None:intergenic | 30.0% |
| AGGGACAAAAGAAATATGTT+AGG | + | chr7_3:78702340-78702359 | None:intergenic | 30.0% | |
| TTCTTGGTTAGAATACATTC+AGG | - | chr7_3:78702511-78702530 | Msa1127190:intron | 30.0% | |
| GGTTAACTAACAAAAAATGG+GGG | + | chr7_3:78702623-78702642 | None:intergenic | 30.0% | |
| ATCAAAATAGCACCACAATA+AGG | + | chr7_3:78702712-78702731 | None:intergenic | 30.0% | |
| CATTTCTTTCTTCAATTGCT+AGG | + | chr7_3:78702851-78702870 | None:intergenic | 30.0% | |
| CCAGATTCTCCATCAATTAT+GGG | + | chr7_3:78701767-78701786 | None:intergenic | 35.0% | |
| TCCAGATTCTCCATCAATTA+TGG | + | chr7_3:78701768-78701787 | None:intergenic | 35.0% | |
| ATGGAGAATCTGGAGATTTA+AGG | - | chr7_3:78701774-78701793 | Msa1127190:three_prime_UTR | 35.0% | |
| TGGAGAATCTGGAGATTTAA+GGG | - | chr7_3:78701775-78701794 | Msa1127190:three_prime_UTR | 35.0% | |
| ! | CACCTCATGAACTTTTCAAA+AGG | - | chr7_3:78701906-78701925 | Msa1127190:three_prime_UTR | 35.0% |
| !! | TCCCTTTTGAAAAGTTCATG+AGG | + | chr7_3:78701911-78701930 | None:intergenic | 35.0% |
| ! | CATGAACTTTTCAAAAGGGA+AGG | - | chr7_3:78701911-78701930 | Msa1127190:three_prime_UTR | 35.0% |
| TATCCAAAATCCGAAAGGTA+AGG | + | chr7_3:78702003-78702022 | None:intergenic | 35.0% | |
| AGTGTTATCCAAAATCCGAA+AGG | + | chr7_3:78702008-78702027 | None:intergenic | 35.0% | |
| ! | ACACTTGTTGATTGTGCAAA+CGG | - | chr7_3:78702105-78702124 | Msa1127190:three_prime_UTR | 35.0% |
| TGTCTACCAAATGTTCATCA+AGG | + | chr7_3:78702234-78702253 | None:intergenic | 35.0% | |
| TCTTCTTTGCTGCTCTTAAT+TGG | - | chr7_3:78702279-78702298 | Msa1127190:intron | 35.0% | |
| !!! | TGTTTCAATGTTTTTGGGGT+GGG | + | chr7_3:78702315-78702334 | None:intergenic | 35.0% |
| !! | GGTGTGTTTCAATGTTTTTG+GGG | + | chr7_3:78702319-78702338 | None:intergenic | 35.0% |
| ! | ACATATTTCTTTTGTCCCTC+AGG | - | chr7_3:78702341-78702360 | Msa1127190:intron | 35.0% |
| ! | CATATTTCTTTTGTCCCTCA+GGG | - | chr7_3:78702342-78702361 | Msa1127190:intron | 35.0% |
| TCACAAATCCAAAGCAAGTA+AGG | - | chr7_3:78702367-78702386 | Msa1127190:intron | 35.0% | |
| TTGAACTTCCTTACTTGCTT+TGG | + | chr7_3:78702378-78702397 | None:intergenic | 35.0% | |
| AAGCAAGTAAGGAAGTTCAA+AGG | - | chr7_3:78702378-78702397 | Msa1127190:intron | 35.0% | |
| AGCAAGTAAGGAAGTTCAAA+GGG | - | chr7_3:78702379-78702398 | Msa1127190:intron | 35.0% | |
| TTCTTTGTGCTCATATGCAA+TGG | + | chr7_3:78702414-78702433 | None:intergenic | 35.0% | |
| TTGCATATGAGCACAAAGAA+AGG | - | chr7_3:78702414-78702433 | Msa1127190:CDS | 35.0% | |
| !!! | AGATCTTTACGTCACTTTTG+AGG | - | chr7_3:78702437-78702456 | Msa1127190:CDS | 35.0% |
| GTCCTCAATGTAACATGATT+AGG | - | chr7_3:78702557-78702576 | Msa1127190:intron | 35.0% | |
| CACCTAATCATGTTACATTG+AGG | + | chr7_3:78702562-78702581 | None:intergenic | 35.0% | |
| CTCAATGTAACATGATTAGG+TGG | - | chr7_3:78702560-78702579 | Msa1127190:intron | 35.0% | |
| TTACAACAAATACACGCCTT+AGG | - | chr7_3:78702590-78702609 | Msa1127190:intron | 35.0% | |
| !!! | TGTGGTGCTATTTTGATACA+AGG | - | chr7_3:78702715-78702734 | Msa1127190:CDS | 35.0% |
| CCAGATTCTCCATCAATTAT+GGG | + | chr7_3:78701767-78701786 | None:intergenic | 35.0% | |
| TCCAGATTCTCCATCAATTA+TGG | + | chr7_3:78701768-78701787 | None:intergenic | 35.0% | |
| ATGGAGAATCTGGAGATTTA+AGG | - | chr7_3:78701774-78701793 | Msa1127190:three_prime_UTR | 35.0% | |
| TGGAGAATCTGGAGATTTAA+GGG | - | chr7_3:78701775-78701794 | Msa1127190:three_prime_UTR | 35.0% | |
| ! | CACCTCATGAACTTTTCAAA+AGG | - | chr7_3:78701906-78701925 | Msa1127190:three_prime_UTR | 35.0% |
| !! | TCCCTTTTGAAAAGTTCATG+AGG | + | chr7_3:78701911-78701930 | None:intergenic | 35.0% |
| ! | CATGAACTTTTCAAAAGGGA+AGG | - | chr7_3:78701911-78701930 | Msa1127190:three_prime_UTR | 35.0% |
| TATCCAAAATCCGAAAGGTA+AGG | + | chr7_3:78702003-78702022 | None:intergenic | 35.0% | |
| AGTGTTATCCAAAATCCGAA+AGG | + | chr7_3:78702008-78702027 | None:intergenic | 35.0% | |
| ! | ACACTTGTTGATTGTGCAAA+CGG | - | chr7_3:78702105-78702124 | Msa1127190:three_prime_UTR | 35.0% |
| TGTCTACCAAATGTTCATCA+AGG | + | chr7_3:78702234-78702253 | None:intergenic | 35.0% | |
| TCTTCTTTGCTGCTCTTAAT+TGG | - | chr7_3:78702279-78702298 | Msa1127190:intron | 35.0% | |
| !!! | TGTTTCAATGTTTTTGGGGT+GGG | + | chr7_3:78702315-78702334 | None:intergenic | 35.0% |
| !! | GGTGTGTTTCAATGTTTTTG+GGG | + | chr7_3:78702319-78702338 | None:intergenic | 35.0% |
| ! | ACATATTTCTTTTGTCCCTC+AGG | - | chr7_3:78702341-78702360 | Msa1127190:intron | 35.0% |
| ! | CATATTTCTTTTGTCCCTCA+GGG | - | chr7_3:78702342-78702361 | Msa1127190:intron | 35.0% |
| TCACAAATCCAAAGCAAGTA+AGG | - | chr7_3:78702367-78702386 | Msa1127190:intron | 35.0% | |
| TTGAACTTCCTTACTTGCTT+TGG | + | chr7_3:78702378-78702397 | None:intergenic | 35.0% | |
| AAGCAAGTAAGGAAGTTCAA+AGG | - | chr7_3:78702378-78702397 | Msa1127190:intron | 35.0% | |
| AGCAAGTAAGGAAGTTCAAA+GGG | - | chr7_3:78702379-78702398 | Msa1127190:intron | 35.0% | |
| TTCTTTGTGCTCATATGCAA+TGG | + | chr7_3:78702414-78702433 | None:intergenic | 35.0% | |
| TTGCATATGAGCACAAAGAA+AGG | - | chr7_3:78702414-78702433 | Msa1127190:CDS | 35.0% | |
| !!! | AGATCTTTACGTCACTTTTG+AGG | - | chr7_3:78702437-78702456 | Msa1127190:CDS | 35.0% |
| GTCCTCAATGTAACATGATT+AGG | - | chr7_3:78702557-78702576 | Msa1127190:intron | 35.0% | |
| CACCTAATCATGTTACATTG+AGG | + | chr7_3:78702562-78702581 | None:intergenic | 35.0% | |
| CTCAATGTAACATGATTAGG+TGG | - | chr7_3:78702560-78702579 | Msa1127190:intron | 35.0% | |
| TTACAACAAATACACGCCTT+AGG | - | chr7_3:78702590-78702609 | Msa1127190:intron | 35.0% | |
| !!! | TGTGGTGCTATTTTGATACA+AGG | - | chr7_3:78702715-78702734 | Msa1127190:CDS | 35.0% |
| !!! | GAGGTGCTATTTTATGAGGA+CGG | - | chr7_3:78701737-78701756 | Msa1127190:three_prime_UTR | 40.0% |
| CCCATAATTGATGGAGAATC+TGG | - | chr7_3:78701764-78701783 | Msa1127190:three_prime_UTR | 40.0% | |
| CACGCTGGTAAGTATAATCA+TGG | - | chr7_3:78701961-78701980 | Msa1127190:three_prime_UTR | 40.0% | |
| ! | GTACCTTACCTTTCGGATTT+TGG | - | chr7_3:78701997-78702016 | Msa1127190:three_prime_UTR | 40.0% |
| AGTAACTAGCATGGAAGAGT+TGG | - | chr7_3:78702076-78702095 | Msa1127190:three_prime_UTR | 40.0% | |
| GTGTAACCTTGATCTCCTTT+AGG | - | chr7_3:78702171-78702190 | Msa1127190:CDS | 40.0% | |
| CTTGAACCTAAAGGAGATCA+AGG | + | chr7_3:78702180-78702199 | None:intergenic | 40.0% | |
| CAACAAGAGCTTGAACCTAA+AGG | + | chr7_3:78702189-78702208 | None:intergenic | 40.0% | |
| ! | CTTTAGGTTCAAGCTCTTGT+TGG | - | chr7_3:78702187-78702206 | Msa1127190:CDS | 40.0% |
| TTTGGTAGACATAAGCTCGA+AGG | - | chr7_3:78702243-78702262 | Msa1127190:CDS | 40.0% | |
| !!! | GTGTTTCAATGTTTTTGGGG+TGG | + | chr7_3:78702316-78702335 | None:intergenic | 40.0% |
| TTGGATTTGTGATTCCCTGA+GGG | + | chr7_3:78702359-78702378 | None:intergenic | 40.0% | |
| TTTGGATTTGTGATTCCCTG+AGG | + | chr7_3:78702360-78702379 | None:intergenic | 40.0% | |
| GCAAGTAAGGAAGTTCAAAG+GGG | - | chr7_3:78702380-78702399 | Msa1127190:intron | 40.0% | |
| ! | TGGTTTTCATCTTGTGAGCA+AGG | - | chr7_3:78702797-78702816 | Msa1127190:intron | 40.0% |
| !!! | GAGGTGCTATTTTATGAGGA+CGG | - | chr7_3:78701737-78701756 | Msa1127190:three_prime_UTR | 40.0% |
| CCCATAATTGATGGAGAATC+TGG | - | chr7_3:78701764-78701783 | Msa1127190:three_prime_UTR | 40.0% | |
| CACGCTGGTAAGTATAATCA+TGG | - | chr7_3:78701961-78701980 | Msa1127190:three_prime_UTR | 40.0% | |
| ! | GTACCTTACCTTTCGGATTT+TGG | - | chr7_3:78701997-78702016 | Msa1127190:three_prime_UTR | 40.0% |
| AGTAACTAGCATGGAAGAGT+TGG | - | chr7_3:78702076-78702095 | Msa1127190:three_prime_UTR | 40.0% | |
| GTGTAACCTTGATCTCCTTT+AGG | - | chr7_3:78702171-78702190 | Msa1127190:CDS | 40.0% | |
| CTTGAACCTAAAGGAGATCA+AGG | + | chr7_3:78702180-78702199 | None:intergenic | 40.0% | |
| CAACAAGAGCTTGAACCTAA+AGG | + | chr7_3:78702189-78702208 | None:intergenic | 40.0% | |
| ! | CTTTAGGTTCAAGCTCTTGT+TGG | - | chr7_3:78702187-78702206 | Msa1127190:CDS | 40.0% |
| TTTGGTAGACATAAGCTCGA+AGG | - | chr7_3:78702243-78702262 | Msa1127190:CDS | 40.0% | |
| !!! | GTGTTTCAATGTTTTTGGGG+TGG | + | chr7_3:78702316-78702335 | None:intergenic | 40.0% |
| TTGGATTTGTGATTCCCTGA+GGG | + | chr7_3:78702359-78702378 | None:intergenic | 40.0% | |
| TTTGGATTTGTGATTCCCTG+AGG | + | chr7_3:78702360-78702379 | None:intergenic | 40.0% | |
| GCAAGTAAGGAAGTTCAAAG+GGG | - | chr7_3:78702380-78702399 | Msa1127190:intron | 40.0% | |
| ! | TGGTTTTCATCTTGTGAGCA+AGG | - | chr7_3:78702797-78702816 | Msa1127190:intron | 40.0% |
| !! | AAAGTTCATGAGGTGCTGTG+CGG | + | chr7_3:78701901-78701920 | None:intergenic | 45.0% |
| AGTAAGGAAGTTCAAAGGGG+AGG | - | chr7_3:78702383-78702402 | Msa1127190:intron | 45.0% | |
| GTAAGGAAGTTCAAAGGGGA+GGG | - | chr7_3:78702384-78702403 | Msa1127190:intron | 45.0% | |
| TTTCTGTTCCTCCGATAGTG+AGG | + | chr7_3:78702475-78702494 | None:intergenic | 45.0% | |
| GCATCTACTGTGATCCTTGT+CGG | - | chr7_3:78702676-78702695 | Msa1127190:intron | 45.0% | |
| ! | AGCTTGCTTTGTGTCTGCAA+TGG | - | chr7_3:78702777-78702796 | Msa1127190:intron | 45.0% |
| CATCTTGTGAGCAAGGTGAA+AGG | - | chr7_3:78702804-78702823 | Msa1127190:intron | 45.0% | |
| !! | AAAGTTCATGAGGTGCTGTG+CGG | + | chr7_3:78701901-78701920 | None:intergenic | 45.0% |
| AGTAAGGAAGTTCAAAGGGG+AGG | - | chr7_3:78702383-78702402 | Msa1127190:intron | 45.0% | |
| GTAAGGAAGTTCAAAGGGGA+GGG | - | chr7_3:78702384-78702403 | Msa1127190:intron | 45.0% | |
| TTTCTGTTCCTCCGATAGTG+AGG | + | chr7_3:78702475-78702494 | None:intergenic | 45.0% | |
| GCATCTACTGTGATCCTTGT+CGG | - | chr7_3:78702676-78702695 | Msa1127190:intron | 45.0% | |
| ! | AGCTTGCTTTGTGTCTGCAA+TGG | - | chr7_3:78702777-78702796 | Msa1127190:intron | 45.0% |
| CATCTTGTGAGCAAGGTGAA+AGG | - | chr7_3:78702804-78702823 | Msa1127190:intron | 45.0% | |
| TCTGTTCCCCACCTCACTAT+CGG | - | chr7_3:78702461-78702480 | Msa1127190:intron | 50.0% | |
| TGTTCCTCCGATAGTGAGGT+GGG | + | chr7_3:78702471-78702490 | None:intergenic | 50.0% | |
| ! | GGCACATGAGTGCCTTATTG+TGG | - | chr7_3:78702697-78702716 | Msa1127190:CDS | 50.0% |
| TCTGTTCCCCACCTCACTAT+CGG | - | chr7_3:78702461-78702480 | Msa1127190:intron | 50.0% | |
| TGTTCCTCCGATAGTGAGGT+GGG | + | chr7_3:78702471-78702490 | None:intergenic | 50.0% | |
| ! | GGCACATGAGTGCCTTATTG+TGG | - | chr7_3:78702697-78702716 | Msa1127190:CDS | 50.0% |
| GACGGCGAGCCCATAATTGA+TGG | - | chr7_3:78701755-78701774 | Msa1127190:three_prime_UTR | 55.0% | |
| CACGACTGTCACTATCACGC+TGG | - | chr7_3:78701946-78701965 | Msa1127190:three_prime_UTR | 55.0% | |
| GTTCCTCCGATAGTGAGGTG+GGG | + | chr7_3:78702470-78702489 | None:intergenic | 55.0% | |
| CTGTTCCTCCGATAGTGAGG+TGG | + | chr7_3:78702472-78702491 | None:intergenic | 55.0% | |
| AAATGGGGGCGAGAAGCCTA+AGG | + | chr7_3:78702609-78702628 | None:intergenic | 55.0% | |
| ! | AAGGCACTCATGTGCCGACA+AGG | + | chr7_3:78702693-78702712 | None:intergenic | 55.0% |
| GACGGCGAGCCCATAATTGA+TGG | - | chr7_3:78701755-78701774 | Msa1127190:three_prime_UTR | 55.0% | |
| CACGACTGTCACTATCACGC+TGG | - | chr7_3:78701946-78701965 | Msa1127190:three_prime_UTR | 55.0% | |
| GTTCCTCCGATAGTGAGGTG+GGG | + | chr7_3:78702470-78702489 | None:intergenic | 55.0% | |
| CTGTTCCTCCGATAGTGAGG+TGG | + | chr7_3:78702472-78702491 | None:intergenic | 55.0% | |
| AAATGGGGGCGAGAAGCCTA+AGG | + | chr7_3:78702609-78702628 | None:intergenic | 55.0% | |
| ! | AAGGCACTCATGTGCCGACA+AGG | + | chr7_3:78702693-78702712 | None:intergenic | 55.0% |
| GTTCCCCACCTCACTATCGG+AGG | - | chr7_3:78702464-78702483 | Msa1127190:intron | 60.0% | |
| GTTCCCCACCTCACTATCGG+AGG | - | chr7_3:78702464-78702483 | Msa1127190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78701737 | 78702921 | 78701737 | ID=Msa1127190;Name=Msa1127190 |
| chr7_3 | mRNA | 78701737 | 78702921 | 78701737 | ID=Msa1127190-mRNA-1;Parent=Msa1127190;Name=Msa1127190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.75|1|1|1|4|400|122 |
| chr7_3 | exon | 78701737 | 78702295 | 78701737 | ID=Msa1127190-mRNA-1:exon:22120;Parent=Msa1127190-mRNA-1 |
| chr7_3 | exon | 78702394 | 78702465 | 78702394 | ID=Msa1127190-mRNA-1:exon:22119;Parent=Msa1127190-mRNA-1 |
| chr7_3 | exon | 78702691 | 78702768 | 78702691 | ID=Msa1127190-mRNA-1:exon:22118;Parent=Msa1127190-mRNA-1 |
| chr7_3 | exon | 78702862 | 78702921 | 78702862 | ID=Msa1127190-mRNA-1:exon:22117;Parent=Msa1127190-mRNA-1 |
| chr7_3 | CDS | 78702862 | 78702921 | 78702862 | ID=Msa1127190-mRNA-1:cds;Parent=Msa1127190-mRNA-1 |
| chr7_3 | CDS | 78702691 | 78702768 | 78702691 | ID=Msa1127190-mRNA-1:cds;Parent=Msa1127190-mRNA-1 |
| chr7_3 | CDS | 78702394 | 78702465 | 78702394 | ID=Msa1127190-mRNA-1:cds;Parent=Msa1127190-mRNA-1 |
| chr7_3 | CDS | 78702137 | 78702295 | 78702137 | ID=Msa1127190-mRNA-1:cds;Parent=Msa1127190-mRNA-1 |
| chr7_3 | three_prime_UTR | 78701737 | 78702136 | 78701737 | ID=Msa1127190-mRNA-1:three_prime_utr;Parent=Msa1127190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
